AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341690 MtrunA17_Chr2g0334051 95.082 366 5 1 1 353 1 366 0.0 710
Msa0341690 MtrunA17_Chr1g0209971 56.313 396 130 8 1 353 1 396 3.40e-136 393
Msa0341690 MtrunA17_Chr7g0214981 51.979 379 147 6 1 353 1 370 9.43e-120 350
Msa0341690 MtrunA17_Chr1g0146801 89.286 84 8 1 1 84 1 83 7.59e-47 155
Msa0341690 MtrunA17_Chr7g0226581 94.737 76 4 0 1 76 205 280 2.28e-44 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341690 AT1G79650.2 69.022 368 96 7 1 353 1 365 3.09e-177 496
Msa0341690 AT1G79650.1 67.828 373 98 6 1 353 1 371 6.14e-177 496
Msa0341690 AT1G79650.4 64.232 397 96 7 1 353 1 395 2.15e-173 488
Msa0341690 AT1G16190.1 62.632 380 103 9 1 353 1 368 1.05e-160 454
Msa0341690 AT1G79650.3 63.271 373 95 7 1 353 1 351 7.93e-159 449
Msa0341690 AT1G16190.2 61.064 357 100 9 24 353 1 345 1.96e-144 412
Msa0341690 AT5G38470.1 56.218 386 127 10 1 353 1 377 1.43e-132 384
Msa0341690 AT3G02540.1 49.403 419 146 9 1 353 1 419 1.18e-126 370
Msa0341690 AT3G02540.3 49.043 418 148 8 1 353 1 418 1.56e-125 367
Msa0341690 AT5G38470.2 55.077 325 105 9 1 292 1 317 8.80e-104 308
Msa0341690 AT3G02540.2 45.485 299 101 7 1 237 1 299 4.39e-72 226
Msa0341690 AT5G16090.1 46.067 89 42 1 1 83 1 89 2.02e-19 84.7
Msa0341690 AT5G16090.1 44.444 99 51 3 250 347 74 169 1.64e-17 79.7

Find 122 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCAGGAGACAATTTC+TGG 0.118069 2_4:-63531402 Msa0341690:intron
ATCTGTTACTCCTCTCCTTT+GGG 0.209254 2_4:+63529939 None:intergenic
TGGACATGGGTGGTGGCAGC+TGG 0.265592 2_4:-63531814 Msa0341690:CDS
GTCACTACCGGAGTTGTTCC+TGG 0.267181 2_4:-63531555 Msa0341690:CDS
ATCTTCCCTGATTTAGGCTT+TGG 0.268135 2_4:-63530021 Msa0341690:three_prime_UTR
CCTGTTTCAGTTGGATTACT+TGG 0.271776 2_4:+63531582 None:intergenic
GCAGACTATTCAACAACTTA+TGG 0.276186 2_4:-63531834 Msa0341690:CDS
CAAAATCATTAGTAAATAAA+TGG 0.283916 2_4:+63530078 None:intergenic
TTAGCTATCTTCCCTGATTT+AGG 0.287134 2_4:-63530027 Msa0341690:three_prime_UTR
TCTGGTGTTGGCACAGTTAT+AGG 0.298020 2_4:+63533038 None:intergenic
AATCTGTTACTCCTCTCCTT+TGG 0.307508 2_4:+63529938 None:intergenic
TCTATTGCAGCCTGTACTTC+AGG 0.312035 2_4:-63531130 Msa0341690:intron
TAGTAATGTACAGGGGAAAA+TGG 0.316082 2_4:+63529897 None:intergenic
ACAGCAATTTCTGCTGCTTC+AGG 0.324791 2_4:+63531621 None:intergenic
TCCATTATTCCATTCGATTC+CGG 0.325086 2_4:-63534924 Msa0341690:five_prime_UTR
TGGGTGGTGGCAGCTGGGAC+AGG 0.346817 2_4:-63531808 Msa0341690:CDS
CAGGAGACAATTTCTGGTGC+TGG 0.348931 2_4:-63531396 Msa0341690:CDS
CCGATTGCCTCCTGCTCAGC+TGG 0.353647 2_4:+63530490 None:intergenic
ATATTCAAGGGAGACGAGTT+AGG 0.365109 2_4:+63531528 None:intergenic
GAGGAACCAAAGCCTAAATC+AGG 0.376114 2_4:+63530015 None:intergenic
ATTGGCAGCCAACTACTTAC+TGG 0.376662 2_4:-63530263 Msa0341690:CDS
GCTGCTTCAAATTTAGTTGC+TGG 0.382013 2_4:-63531869 Msa0341690:CDS
AAACCACCCTCCTTGCAAAA+AGG 0.386993 2_4:+63530170 None:intergenic
TCTTGTTGTCATGCTTAGTA+AGG 0.396216 2_4:-63534582 Msa0341690:intron
TCACTACCGGAGTTGTTCCT+GGG 0.402891 2_4:-63531554 Msa0341690:CDS
TCCGGAATCGAATGGAATAA+TGG 0.403100 2_4:+63534923 None:intergenic
CCAAGTAATCCAACTGAAAC+AGG 0.407427 2_4:-63531582 Msa0341690:CDS
TTAGATACCTGGAGAATTTG+TGG 0.408356 2_4:+63531220 None:intergenic
ACAATTTCTGGTGCTGGAGC+TGG 0.411957 2_4:-63531390 Msa0341690:CDS
ATGTGGTAGAGTTTCTGATT+TGG 0.412768 2_4:-63530115 Msa0341690:three_prime_UTR
TCTGGTGCTGGAGCTGGAGC+TGG 0.428394 2_4:-63531384 Msa0341690:CDS
TGTACTACAGGTGTGGAATC+TGG 0.428565 2_4:+63533020 None:intergenic
AGCACGAAGAGCACGATTGA+CGG 0.441378 2_4:+63531781 None:intergenic
AGACAAAAGCCATACTTTGT+AGG 0.443079 2_4:+63532873 None:intergenic
CAGAGTTCATCCTTCTGATT+CGG 0.444243 2_4:-63534844 Msa0341690:intron
GAGTAACAGATTGTGGAGTT+AGG 0.447400 2_4:-63529927 Msa0341690:three_prime_UTR
AAGAATATTGAAGACATTCA+AGG 0.452792 2_4:-63534707 Msa0341690:CDS
TGACATGCAGCTAGAGGCTA+TGG 0.454971 2_4:-63530341 Msa0341690:intron
AGGGAAGAGAAGAGCGTGGT+GGG 0.458973 2_4:-63534990 Msa0341690:five_prime_UTR
GATGAACTCTGATTTCGAAA+TGG 0.460278 2_4:+63534856 None:intergenic
TAATGTGACGCCAGCTGAGC+AGG 0.461283 2_4:-63530500 Msa0341690:CDS
CCAGCTGAGCAGGAGGCAAT+CGG 0.461594 2_4:-63530490 Msa0341690:CDS
GACAATAAAGTCTCTGAAGA+TGG 0.470434 2_4:-63534608 Msa0341690:CDS
AGTGTTACTACAGATACTTA+TGG 0.475618 2_4:-63531896 Msa0341690:CDS
CTGTTTCAGTTGGATTACTT+GGG 0.481500 2_4:+63531583 None:intergenic
GTGACCCCACCTGTTTCAGT+TGG 0.484296 2_4:+63531573 None:intergenic
AACTACTTACTGGAAAATGC+TGG 0.492726 2_4:-63530253 Msa0341690:CDS
TCCCTTGAATATGTTTCCAC+AGG 0.499007 2_4:-63531517 Msa0341690:intron
CTTCTTGAGGAACAATCCCC+AGG 0.503164 2_4:-63531352 Msa0341690:intron
TACCTGGAGAATTTGTGGAT+TGG 0.503302 2_4:+63531225 None:intergenic
AGCAGCAGAAATTGCTGTAC+CGG 0.508726 2_4:-63531616 Msa0341690:CDS
CTCACAGTGAAGACTTTGAA+AGG 0.508732 2_4:-63534882 Msa0341690:CDS
CAACGCATCTCCTGCAGTTG+TGG 0.510395 2_4:-63532898 Msa0341690:CDS
GTAGAGTTTCTGATTTGGAT+TGG 0.510419 2_4:-63530110 Msa0341690:three_prime_UTR
GAAAGTATACGACTATTGCT+AGG 0.510851 2_4:-63534957 Msa0341690:five_prime_UTR
CTGGTTCGCTTGACTTCTTG+AGG 0.511578 2_4:-63531365 Msa0341690:CDS
ACTCACTGAGTCTGTACTAC+AGG 0.513693 2_4:+63533008 None:intergenic
TTTCCGAGCTCCTGAAGTAC+AGG 0.521041 2_4:+63531120 None:intergenic
TACCTGTGGAAACATATTCA+AGG 0.524366 2_4:+63531515 None:intergenic
GGGTGGTGGCAGCTGGGACA+GGG 0.526645 2_4:-63531807 Msa0341690:CDS
TCTTTCTAGGGAAATTTATG+TGG 0.530069 2_4:-63530132 Msa0341690:three_prime_UTR
TTTGTAGGTGCCACAACTGC+AGG 0.530119 2_4:+63532888 None:intergenic
AAGTAATCTACAGCACGCTC+TGG 0.531024 2_4:+63531746 None:intergenic
ACTACTTACTGGAAAATGCT+GGG 0.533868 2_4:-63530252 Msa0341690:CDS
AGGAGAGGAGTAACAGATTG+TGG 0.534444 2_4:-63529934 Msa0341690:three_prime_UTR
AAGGGAAGAGAAGAGCGTGG+TGG 0.534461 2_4:-63534991 Msa0341690:five_prime_UTR
CTTCATGACTGACACCGATC+CGG 0.538152 2_4:+63534905 None:intergenic
TACTACAGATACTTATGGAC+AGG 0.538234 2_4:-63531891 Msa0341690:CDS
ATCAGCAATTGTTGTCCGCA+TGG 0.538362 2_4:+63534671 None:intergenic
ACCTGTGGAAACATATTCAA+GGG 0.538673 2_4:+63531516 None:intergenic
GGACATGGGTGGTGGCAGCT+GGG 0.540658 2_4:-63531813 Msa0341690:CDS
TTACTTGGGTATTGAGCAGC+CGG 0.541551 2_4:+63531597 None:intergenic
TATTCAAGGGAGACGAGTTA+GGG 0.546347 2_4:+63531529 None:intergenic
TCACCCTTCAGTACCGTCCA+TGG 0.546504 2_4:+63531029 None:intergenic
ATCCAATCCACAAATTCTCC+AGG 0.549169 2_4:-63531227 Msa0341690:intron
GAACCCATGGACGGTACTGA+AGG 0.549758 2_4:-63531033 Msa0341690:CDS
CAACTTATGGACATGGGTGG+TGG 0.550778 2_4:-63531821 Msa0341690:CDS
ATGTGACCGTGATGAGCAAT+TGG 0.553039 2_4:-63530281 Msa0341690:CDS
GAGCTCGGAAAGCAAAATCC+AGG 0.561167 2_4:-63531108 Msa0341690:CDS
GAAACAGGTGGGGTCACTAC+CGG 0.561305 2_4:-63531567 Msa0341690:CDS
CACCCTTCAGTACCGTCCAT+GGG 0.562359 2_4:+63531030 None:intergenic
TCAGCAATTGTTGTCCGCAT+GGG 0.565758 2_4:+63534672 None:intergenic
GGGAAGGGAAGAGAAGAGCG+TGG 0.566820 2_4:-63534994 Msa0341690:five_prime_UTR
TCACAGTGAAGACTTTGAAA+GGG 0.581575 2_4:-63534881 Msa0341690:CDS
AGGAACCAAAGCCTAAATCA+GGG 0.583656 2_4:+63530016 None:intergenic
AAAGTATACGACTATTGCTA+GGG 0.584949 2_4:-63534956 Msa0341690:five_prime_UTR
GTTTCAAGCATTGCGGACAA+TGG 0.588792 2_4:-63531254 Msa0341690:CDS
TATTCAACAACTTATGGACA+TGG 0.590819 2_4:-63531828 Msa0341690:CDS
CAACAATTGCTGATTCACAA+TGG 0.594059 2_4:-63534662 Msa0341690:CDS
GACACCGATCCGGAATCGAA+TGG 0.594283 2_4:+63534915 None:intergenic
TCAGTTGATAAATGAACCCA+TGG 0.600530 2_4:-63531046 Msa0341690:CDS
TATTCCATTCGATTCCGGAT+CGG 0.601383 2_4:-63534919 Msa0341690:five_prime_UTR
CTGAGCAGGAGGCAATCGGA+AGG 0.602554 2_4:-63530486 Msa0341690:CDS
TCAATAAGTCTCAAGAGACC+TGG 0.604931 2_4:+63531090 None:intergenic
CAGCCTGTACTTCAGGAGCT+CGG 0.605573 2_4:-63531123 Msa0341690:CDS
GGTGTTGGCACAGTTATAGG+TGG 0.606530 2_4:+63533041 None:intergenic
CTGAGTCTGTACTACAGGTG+TGG 0.617878 2_4:+63533013 None:intergenic
TGATAGAGCCTCTGTCATAG+AGG 0.619305 2_4:-63530314 Msa0341690:CDS
GACATGCAGCTAGAGGCTAT+GGG 0.619380 2_4:-63530340 Msa0341690:intron
AACCCATGGACGGTACTGAA+GGG 0.627966 2_4:-63531032 Msa0341690:intron
GGAGACGAGTTAGGGACCCC+AGG 0.628070 2_4:+63531537 None:intergenic
TGTGACGCCAGCTGAGCAGG+AGG 0.630237 2_4:-63530497 Msa0341690:CDS
AGTTATAGGTGGATTGCTAA+CGG 0.630709 2_4:+63533052 None:intergenic
CTACTTACTGGAAAATGCTG+GGG 0.630947 2_4:-63530251 Msa0341690:CDS
GGCGTCACATTAACAGCATG+AGG 0.631358 2_4:+63530511 None:intergenic
GTAATCCAACTGAAACAGGT+GGG 0.636270 2_4:-63531578 Msa0341690:CDS
AGTAATCCAACTGAAACAGG+TGG 0.636970 2_4:-63531579 Msa0341690:CDS
TTGATAAATGAACCCATGGA+CGG 0.638539 2_4:-63531042 Msa0341690:CDS
AACATACATACCGAATCAGA+AGG 0.642123 2_4:+63534834 None:intergenic
AGGGACCCCAGGAACAACTC+CGG 0.643664 2_4:+63531548 None:intergenic
TGGCTGCCAATTGCTCATCA+CGG 0.645634 2_4:+63530275 None:intergenic
TCTGTTACTCCTCTCCTTTG+GGG 0.647741 2_4:+63529940 None:intergenic
ATTCAACAACTTATGGACAT+GGG 0.649122 2_4:-63531827 Msa0341690:CDS
ATGTACAGGGGAAAATGGAG+AGG 0.652561 2_4:+63529902 None:intergenic
TGAGCAGGAGGCAATCGGAA+GGG 0.655930 2_4:-63530485 Msa0341690:intron
TAATCCAACTGAAACAGGTG+GGG 0.656148 2_4:-63531577 Msa0341690:CDS
ATATTTAGTTTCAAGCATTG+CGG 0.659936 2_4:-63531261 Msa0341690:intron
ACAGGTGTGGAATCTGGTGT+TGG 0.666566 2_4:+63533026 None:intergenic
CAACAACTTATGGACATGGG+TGG 0.667629 2_4:-63531824 Msa0341690:CDS
CACTACCGGAGTTGTTCCTG+GGG 0.671383 2_4:-63531553 Msa0341690:CDS
GGAAAAGATAATTACCCATG+CGG 0.704659 2_4:-63534686 Msa0341690:CDS
AAAACTATAGTAATGTACAG+GGG 0.734808 2_4:+63529890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+TGG - chr2_4:63530347-63530366 Msa0341690:intron 0.0%
!! AAAAAAATTGAATGAATATT+GGG + chr2_4:63530142-63530161 None:intergenic 10.0%
!! TTAGAATGTTATATATAATT+AGG + chr2_4:63530516-63530535 None:intergenic 10.0%
!!! TTTTTGTAACTTATTTTATT+TGG - chr2_4:63531965-63531984 Msa0341690:intron 10.0%
!! AAGAATGTTAATAAAAAAAG+AGG + chr2_4:63530101-63530120 None:intergenic 15.0%
!! AAAAAATTGAATGAATATTG+GGG + chr2_4:63530141-63530160 None:intergenic 15.0%
!! CAAAAAAATTGAATGAATAT+TGG + chr2_4:63530143-63530162 None:intergenic 15.0%
!! ATCTAAATTACTTTCAATTT+AGG - chr2_4:63530388-63530407 Msa0341690:intron 15.0%
!! TCTAAATTACTTTCAATTTA+GGG - chr2_4:63530389-63530408 Msa0341690:intron 15.0%
!! AATAATAAACATACAATACA+AGG - chr2_4:63530649-63530668 Msa0341690:intron 15.0%
!!! CTCATTTTTTAATATCTTTT+TGG - chr2_4:63531778-63531797 Msa0341690:CDS 15.0%
!! TACAAAAAAACATAAGTTTA+TGG + chr2_4:63531953-63531972 None:intergenic 15.0%
!! ATTAATTATAATATTAGACC+AGG + chr2_4:63532216-63532235 None:intergenic 15.0%
!!! ATGAACACTATTTTAATTTA+GGG + chr2_4:63532888-63532907 None:intergenic 15.0%
!!! TATGAACACTATTTTAATTT+AGG + chr2_4:63532889-63532908 None:intergenic 15.0%
!! TTTAACAATTATTTATATGC+AGG - chr2_4:63533257-63533276 Msa0341690:intron 15.0%
!! TTAACAATTATTTATATGCA+GGG - chr2_4:63533258-63533277 Msa0341690:intron 15.0%
!! GGTAAAAATAATAATTTGAA+TGG - chr2_4:63533410-63533429 Msa0341690:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG - chr2_4:63534181-63534200 Msa0341690:intron 15.0%
!!! TCTCCATTTATTTTTATAAA+TGG + chr2_4:63534187-63534206 None:intergenic 15.0%
!! ATTTATAAAAATAAATGGAG+AGG - chr2_4:63534186-63534205 Msa0341690:intron 15.0%
!! CAAAATCATTAGTAAATAAA+TGG + chr2_4:63534831-63534850 None:intergenic 15.0%
!!! ATTTACTAATGATTTTGTAT+TGG - chr2_4:63534834-63534853 Msa0341690:intron 15.0%
!! AAAAATTGAATGAATATTGG+GGG + chr2_4:63530140-63530159 None:intergenic 20.0%
!!! GTTTTGTTATTATCAGATAA+TGG - chr2_4:63530168-63530187 Msa0341690:three_prime_UTR 20.0%
!! CTAAATTACTTTCAATTTAG+GGG - chr2_4:63530390-63530409 Msa0341690:intron 20.0%
!! TCTTTAATTATTGAGTATGA+TGG - chr2_4:63531066-63531085 Msa0341690:CDS 20.0%
!! TCGTAGAATATAAATTTAGT+TGG - chr2_4:63531645-63531664 Msa0341690:intron 20.0%
!!! TGTATTACTGATTATAAGAA+TGG + chr2_4:63532154-63532173 None:intergenic 20.0%
!! TTATGGTTGTAATTTGAATT+TGG - chr2_4:63532190-63532209 Msa0341690:intron 20.0%
!! ATTATTATTGAACAGAACTT+TGG + chr2_4:63532653-63532672 None:intergenic 20.0%
!! ATCAAATAAGATAAATCACA+AGG + chr2_4:63533233-63533252 None:intergenic 20.0%
!!! CAAATTATTATTTTTACCTG+TGG + chr2_4:63533408-63533427 None:intergenic 20.0%
!! CAAAATAAAGTACAAAGTAA+CGG + chr2_4:63533476-63533495 None:intergenic 20.0%
!! TATAATAGAAACATGACTAT+GGG + chr2_4:63533975-63533994 None:intergenic 20.0%
!! TTATAATAGAAACATGACTA+TGG + chr2_4:63533976-63533995 None:intergenic 20.0%
!! TTGAAACTAATTAATGATGT+TGG - chr2_4:63534098-63534117 Msa0341690:intron 20.0%
!! TGAAACTAATTAATGATGTT+GGG - chr2_4:63534099-63534118 Msa0341690:intron 20.0%
!!! TATTAGAGATAATTTTGATC+AGG - chr2_4:63534358-63534377 Msa0341690:intron 20.0%
!!! TCAATTTCATTTTTTTGCAA+AGG + chr2_4:63534514-63534533 None:intergenic 20.0%
!! AAAAACTATAGTAATGTACA+GGG + chr2_4:63535020-63535039 None:intergenic 20.0%
! AGAAGAAAAGAAAAAAGAGA+AGG - chr2_4:63529891-63529910 Msa0341690:three_prime_UTR 25.0%
! GAAGAAAAGAAAAAAGAGAA+GGG - chr2_4:63529892-63529911 Msa0341690:three_prime_UTR 25.0%
! AAGAATATTGAAGACATTCA+AGG - chr2_4:63530199-63530218 Msa0341690:three_prime_UTR 25.0%
! TCCACTTATAAGTTGTTTAA+CGG - chr2_4:63530439-63530458 Msa0341690:intron 25.0%
! TATAAGAATTTAATGCAGCA+TGG - chr2_4:63530611-63530630 Msa0341690:intron 25.0%
!!! TCCTTAAATCCTTTTTTTGA+AGG - chr2_4:63530821-63530840 Msa0341690:intron 25.0%
!!! CCTTAAATCCTTTTTTTGAA+GGG - chr2_4:63530822-63530841 Msa0341690:intron 25.0%
!! AATTCGAATCCTTTTTCTAA+AGG - chr2_4:63530855-63530874 Msa0341690:intron 25.0%
!! ATTCGAATCCTTTTTCTAAA+GGG - chr2_4:63530856-63530875 Msa0341690:intron 25.0%
!! AATTCAAATCCTCTTTTTGA+AGG - chr2_4:63530889-63530908 Msa0341690:intron 25.0%
!! ATTCAAATCCTCTTTTTGAA+GGG - chr2_4:63530890-63530909 Msa0341690:intron 25.0%
! AACTGAACATTACTCTTAAA+AGG + chr2_4:63530935-63530954 None:intergenic 25.0%
! TAACAACATTGAAGTAAAGT+AGG + chr2_4:63531006-63531025 None:intergenic 25.0%
!!! GTTTTATTGCTATGTACTTT+AGG - chr2_4:63531042-63531061 Msa0341690:CDS 25.0%
!! TATACCACTATAGCATTTTA+GGG - chr2_4:63531178-63531197 Msa0341690:intron 25.0%
!!! AGAGATTATTTTTTCCTTCA+GGG + chr2_4:63531541-63531560 None:intergenic 25.0%
!!! TAGAGATTATTTTTTCCTTC+AGG + chr2_4:63531542-63531561 None:intergenic 25.0%
!!! TGTTTTTTGGGATCTAATTT+AGG + chr2_4:63531593-63531612 None:intergenic 25.0%
! TTATATTCTACGACCTAAAT+TGG + chr2_4:63531638-63531657 None:intergenic 25.0%
! AGACAAAATCTACATAAAGA+TGG + chr2_4:63532113-63532132 None:intergenic 25.0%
! ATTCTTGATGCTAAAAGTTA+TGG - chr2_4:63532173-63532192 Msa0341690:intron 25.0%
! GAGAGAAATAATTGAATAGA+TGG + chr2_4:63532256-63532275 None:intergenic 25.0%
!!! AATTTAATTTTACCATGACC+TGG + chr2_4:63532308-63532327 None:intergenic 25.0%
! AGGTCATGGTAAAATTAAAT+TGG - chr2_4:63532307-63532326 Msa0341690:intron 25.0%
! GGTCATGGTAAAATTAAATT+GGG - chr2_4:63532308-63532327 Msa0341690:intron 25.0%
!! TCTATTCTTCATTTTAGACT+AGG + chr2_4:63532772-63532791 None:intergenic 25.0%
!! TTTAGGGTGTAACTATAATT+AGG + chr2_4:63532872-63532891 None:intergenic 25.0%
! ACATTGAAATGTATTTCAGA+AGG + chr2_4:63532981-63533000 None:intergenic 25.0%
! GAAACTAAATATGCAGAATA+TGG + chr2_4:63533637-63533656 None:intergenic 25.0%
!! ATATTTAGTTTCAAGCATTG+CGG - chr2_4:63533645-63533664 Msa0341690:intron 25.0%
! AAAATAGATAGTTAGATACC+TGG + chr2_4:63533700-63533719 None:intergenic 25.0%
! ATGATTGTAAAATGCAAAGA+TGG + chr2_4:63533944-63533963 None:intergenic 25.0%
! TACACACAAAATATAGATGT+GGG + chr2_4:63534143-63534162 None:intergenic 25.0%
! ATACACACAAAATATAGATG+TGG + chr2_4:63534144-63534163 None:intergenic 25.0%
! TAAAAATGAATCAGCACATA+TGG + chr2_4:63534541-63534560 None:intergenic 25.0%
! CAAAAACTATGAATCATTGT+AGG + chr2_4:63534703-63534722 None:intergenic 25.0%
!! ATGATTCATAGTTTTTGTTC+AGG - chr2_4:63534706-63534725 Msa0341690:CDS 25.0%
!! AATTTTTCTTCTGTCTTTCT+AGG - chr2_4:63534761-63534780 Msa0341690:intron 25.0%
!! ATTTTTCTTCTGTCTTTCTA+GGG - chr2_4:63534762-63534781 Msa0341690:intron 25.0%
! AAAACTATAGTAATGTACAG+GGG + chr2_4:63535019-63535038 None:intergenic 25.0%
! GAAAAACTATAGTAATGTAC+AGG + chr2_4:63535021-63535040 None:intergenic 25.0%
AAAAGAAAAAAGAGAAGGGA+AGG - chr2_4:63529896-63529915 Msa0341690:three_prime_UTR 30.0%
AAAGAAAAAAGAGAAGGGAA+GGG - chr2_4:63529897-63529916 Msa0341690:three_prime_UTR 30.0%
AAAGTATACGACTATTGCTA+GGG - chr2_4:63529950-63529969 Msa0341690:three_prime_UTR 30.0%
GTTAAACAACTTATAAGTGG+AGG + chr2_4:63530440-63530459 None:intergenic 30.0%
CCCTTCAAAAAAAGGATTTA+AGG + chr2_4:63530825-63530844 None:intergenic 30.0%
CATTTACACCCTTCAAAAAA+AGG + chr2_4:63530833-63530852 None:intergenic 30.0%
! CATTTACACCCTTTAGAAAA+AGG + chr2_4:63530867-63530886 None:intergenic 30.0%
AAAATGCTATAGTGGTATAG+CGG + chr2_4:63531177-63531196 None:intergenic 30.0%
! CTATACCACTATAGCATTTT+AGG - chr2_4:63531177-63531196 Msa0341690:intron 30.0%
! ATACCACTATAGCATTTTAG+GGG - chr2_4:63531179-63531198 Msa0341690:intron 30.0%
ATACCTCTAGCAAAACTATA+GGG - chr2_4:63531249-63531268 Msa0341690:CDS 30.0%
! TTCTCAACAGATTAGGTTTT+AGG - chr2_4:63531300-63531319 Msa0341690:intron 30.0%
AACAGTAAAATGGTAGATTG+TGG + chr2_4:63531697-63531716 None:intergenic 30.0%
CTGCAAATAGAACAGTAAAA+TGG + chr2_4:63531707-63531726 None:intergenic 30.0%
AAGTTTATGGAAAAGCTACA+CGG + chr2_4:63531940-63531959 None:intergenic 30.0%
! ATGTAGATTTTGTCTGATGA+AGG - chr2_4:63532118-63532137 Msa0341690:intron 30.0%
TTCTCTCTCTCAAAACTATA+AGG - chr2_4:63532269-63532288 Msa0341690:intron 30.0%
TCTCTCTCTCAAAACTATAA+GGG - chr2_4:63532270-63532289 Msa0341690:intron 30.0%
! ACAAGACTTGTTCAAGTATA+AGG + chr2_4:63532704-63532723 None:intergenic 30.0%
! TATACTTGAACAAGTCTTGT+AGG - chr2_4:63532704-63532723 Msa0341690:intron 30.0%
! ATTTTCTCAGCCTAAAGTTT+GGG + chr2_4:63532749-63532768 None:intergenic 30.0%
GAAACTTGAGTTAGTATGTA+GGG + chr2_4:63532850-63532869 None:intergenic 30.0%
! AATTTGTTTATTGCAGCAAG+AGG + chr2_4:63532922-63532941 None:intergenic 30.0%
! AGTGTTACTACAGATACTTA+TGG - chr2_4:63533010-63533029 Msa0341690:intron 30.0%
TATTCAACAACTTATGGACA+TGG - chr2_4:63533078-63533097 Msa0341690:intron 30.0%
ATTCAACAACTTATGGACAT+GGG - chr2_4:63533079-63533098 Msa0341690:intron 30.0%
!!! TTTTGAGTTGAAACTCTTTC+AGG - chr2_4:63533491-63533510 Msa0341690:intron 30.0%
! ATCATCTAATACCTGTCTTT+TGG - chr2_4:63533724-63533743 Msa0341690:intron 30.0%
TGTTTCTTTATCTCTCCAAA+TGG + chr2_4:63534071-63534090 None:intergenic 30.0%
TGTGTGTATCTCTTTCTAAA+TGG - chr2_4:63534155-63534174 Msa0341690:intron 30.0%
!! TAGAGATAATTTTGATCAGG+CGG - chr2_4:63534361-63534380 Msa0341690:intron 30.0%
!!! CATTTTTTTGCAAAGGCATA+AGG + chr2_4:63534507-63534526 None:intergenic 30.0%
! TCTTTCTAGGGAAATTTATG+TGG - chr2_4:63534774-63534793 Msa0341690:intron 30.0%
!! TTTCGTTTTTCTCTAGTAAG+AGG + chr2_4:63534913-63534932 None:intergenic 30.0%
! GAAAGTATACGACTATTGCT+AGG - chr2_4:63529949-63529968 Msa0341690:three_prime_UTR 35.0%
TCCATTATTCCATTCGATTC+CGG - chr2_4:63529982-63530001 Msa0341690:three_prime_UTR 35.0%
! TCACAGTGAAGACTTTGAAA+GGG - chr2_4:63530025-63530044 Msa0341690:three_prime_UTR 35.0%
GATGAACTCTGATTTCGAAA+TGG + chr2_4:63530053-63530072 None:intergenic 35.0%
AACATACATACCGAATCAGA+AGG + chr2_4:63530075-63530094 None:intergenic 35.0%
GGAAAAGATAATTACCCATG+CGG - chr2_4:63530220-63530239 Msa0341690:exon 35.0%
!! CAACAATTGCTGATTCACAA+TGG - chr2_4:63530244-63530263 Msa0341690:CDS 35.0%
! GACAATAAAGTCTCTGAAGA+TGG - chr2_4:63530298-63530317 Msa0341690:CDS 35.0%
! TCTTGTTGTCATGCTTAGTA+AGG - chr2_4:63530324-63530343 Msa0341690:CDS 35.0%
GCCGTTAAACAACTTATAAG+TGG + chr2_4:63530443-63530462 None:intergenic 35.0%
ATACACCGAAATCCTAATAG+CGG + chr2_4:63530798-63530817 None:intergenic 35.0%
CATTAACACCCTTCAAAAAG+AGG + chr2_4:63530901-63530920 None:intergenic 35.0%
!!! TTTTGCTAGAGGTATCTTGT+AGG + chr2_4:63531244-63531263 None:intergenic 35.0%
GATACCTCTAGCAAAACTAT+AGG - chr2_4:63531248-63531267 Msa0341690:CDS 35.0%
TGTAGAGTTCTCAACAGATT+AGG - chr2_4:63531293-63531312 Msa0341690:intron 35.0%
TATTTGCAGAGTAAAGCCTT+GGG - chr2_4:63531718-63531737 Msa0341690:intron 35.0%
!! AGTTATAGGTGGATTGCTAA+CGG + chr2_4:63531857-63531876 None:intergenic 35.0%
AGACAAAAGCCATACTTTGT+AGG + chr2_4:63532036-63532055 None:intergenic 35.0%
! CTTTTGTCTCTATGTTTCTC+TGG - chr2_4:63532047-63532066 Msa0341690:intron 35.0%
GTTGTAATTTGAATTTGGCC+TGG - chr2_4:63532195-63532214 Msa0341690:intron 35.0%
TCAGATCACAGAAAATCATC+AGG + chr2_4:63532338-63532357 None:intergenic 35.0%
ATTTGTACAACCCCAACTTA+GGG + chr2_4:63532411-63532430 None:intergenic 35.0%
! TGGGGTTGTACAAATGTTTT+TGG - chr2_4:63532416-63532435 Msa0341690:intron 35.0%
! GGGGTTGTACAAATGTTTTT+GGG - chr2_4:63532417-63532436 Msa0341690:intron 35.0%
!!! TTGTACAAATGTTTTTGGGC+TGG - chr2_4:63532421-63532440 Msa0341690:intron 35.0%
AATGAAGTTGTACACAAGTC+TGG + chr2_4:63532491-63532510 None:intergenic 35.0%
! AAAGTTTGGGTTACTCACAA+TGG + chr2_4:63532736-63532755 None:intergenic 35.0%
TTGTGAGTAACCCAAACTTT+AGG - chr2_4:63532736-63532755 Msa0341690:intron 35.0%
! GATTTTCTCAGCCTAAAGTT+TGG + chr2_4:63532750-63532769 None:intergenic 35.0%
! GTAGGGATTTAGGTTTACTT+AGG + chr2_4:63532833-63532852 None:intergenic 35.0%
GAGTTAGTATGTAGGGATTT+AGG + chr2_4:63532843-63532862 None:intergenic 35.0%
GGAAACTTGAGTTAGTATGT+AGG + chr2_4:63532851-63532870 None:intergenic 35.0%
TACTACAGATACTTATGGAC+AGG - chr2_4:63533015-63533034 Msa0341690:CDS 35.0%
GCAGACTATTCAACAACTTA+TGG - chr2_4:63533072-63533091 Msa0341690:intron 35.0%
GAATCAACAATGAGCAGTTT+AGG + chr2_4:63533198-63533217 None:intergenic 35.0%
CTGTTTCAGTTGGATTACTT+GGG + chr2_4:63533326-63533345 None:intergenic 35.0%
ACCTGTGGAAACATATTCAA+GGG + chr2_4:63533393-63533412 None:intergenic 35.0%
TACCTGTGGAAACATATTCA+AGG + chr2_4:63533394-63533413 None:intergenic 35.0%
GGCAAAAGATGTAAATGACA+AGG + chr2_4:63533455-63533474 None:intergenic 35.0%
ATGAAACAAAATGCCTACCT+GGG + chr2_4:63533574-63533593 None:intergenic 35.0%
TTAGATACCTGGAGAATTTG+TGG + chr2_4:63533689-63533708 None:intergenic 35.0%
CAAACAAATGACCAAAAGAC+AGG + chr2_4:63533738-63533757 None:intergenic 35.0%
!! TCAGTTGATAAATGAACCCA+TGG - chr2_4:63533860-63533879 Msa0341690:intron 35.0%
TTGATAAATGAACCCATGGA+CGG - chr2_4:63533864-63533883 Msa0341690:intron 35.0%
AGTATACTGCTTTCCATGTA+TGG - chr2_4:63533899-63533918 Msa0341690:intron 35.0%
AAACTATCACAGACCATACA+TGG + chr2_4:63533915-63533934 None:intergenic 35.0%
! AATGGAGATCTAAAATGGAG+AGG + chr2_4:63534044-63534063 None:intergenic 35.0%
GTAGGAATGGAGATCTAAAA+TGG + chr2_4:63534049-63534068 None:intergenic 35.0%
TCTTTATCTCTCCAAATGGT+AGG + chr2_4:63534067-63534086 None:intergenic 35.0%
TTACCTTCATGTCACAAACA+TGG + chr2_4:63534229-63534248 None:intergenic 35.0%
! AGCATTTTCCAGTAAGTAGT+TGG + chr2_4:63534654-63534673 None:intergenic 35.0%
AACTACTTACTGGAAAATGC+TGG - chr2_4:63534653-63534672 Msa0341690:CDS 35.0%
ACTACTTACTGGAAAATGCT+GGG - chr2_4:63534654-63534673 Msa0341690:CDS 35.0%
! TTTTCTCCTTTTTGCAAGGA+GGG - chr2_4:63534730-63534749 Msa0341690:intron 35.0%
ATGTGGTAGAGTTTCTGATT+TGG - chr2_4:63534791-63534810 Msa0341690:intron 35.0%
!! GTAGAGTTTCTGATTTGGAT+TGG - chr2_4:63534796-63534815 Msa0341690:intron 35.0%
TTAGCTATCTTCCCTGATTT+AGG - chr2_4:63534879-63534898 Msa0341690:CDS 35.0%
!!! CTATTTTTTTCTCTCCCCAA+AGG - chr2_4:63534952-63534971 Msa0341690:five_prime_UTR 35.0%
TAGTAATGTACAGGGGAAAA+TGG + chr2_4:63535012-63535031 None:intergenic 35.0%
TCCGGAATCGAATGGAATAA+TGG + chr2_4:63529986-63530005 None:intergenic 40.0%
TATTCCATTCGATTCCGGAT+CGG - chr2_4:63529987-63530006 Msa0341690:three_prime_UTR 40.0%
CTCACAGTGAAGACTTTGAA+AGG - chr2_4:63530024-63530043 Msa0341690:three_prime_UTR 40.0%
CAGAGTTCATCCTTCTGATT+CGG - chr2_4:63530062-63530081 Msa0341690:three_prime_UTR 40.0%
! GGCTGAATTTTGCACTATCA+GGG - chr2_4:63530411-63530430 Msa0341690:intron 40.0%
TTCTGCTAGAGTGACACTAT+TGG + chr2_4:63530682-63530701 None:intergenic 40.0%
!! TATAGTGGTATAGCGGATAG+CGG + chr2_4:63531170-63531189 None:intergenic 40.0%
!! CTACCCTATAGTTTTGCTAG+AGG + chr2_4:63531255-63531274 None:intergenic 40.0%
!! AATGCAGGCTAGTTCTATCT+TGG + chr2_4:63531417-63531436 None:intergenic 40.0%
! AGATAGAACTAGCCTGCATT+TGG - chr2_4:63531417-63531436 Msa0341690:intron 40.0%
! CGTACTCGGAAATCTTGTTT+AGG + chr2_4:63531489-63531508 None:intergenic 40.0%
GGTTAATCTTAGCACGTACT+CGG + chr2_4:63531503-63531522 None:intergenic 40.0%
TCAGGGACTTTATACTCTTC+TGG + chr2_4:63531524-63531543 None:intergenic 40.0%
! GAAGAGTATAAAGTCCCTGA+AGG - chr2_4:63531524-63531543 Msa0341690:CDS 40.0%
!!! AGGGTGACGTAGTGTTTTTT+GGG + chr2_4:63531605-63531624 None:intergenic 40.0%
CTATTTGCAGAGTAAAGCCT+TGG - chr2_4:63531717-63531736 Msa0341690:intron 40.0%
CAGTCACTAACTCATACAAG+AGG + chr2_4:63531819-63531838 None:intergenic 40.0%
TTTACCATGACCTGGTCTAT+TGG + chr2_4:63532300-63532319 None:intergenic 40.0%
! TGTTTCGTTCAAAGCTCTGA+AGG - chr2_4:63532366-63532385 Msa0341690:intron 40.0%
!! GTTTCGTTCAAAGCTCTGAA+GGG - chr2_4:63532367-63532386 Msa0341690:intron 40.0%
CATTTGTACAACCCCAACTT+AGG + chr2_4:63532412-63532431 None:intergenic 40.0%
TAGAATCCTAATCGAACCAC+AGG - chr2_4:63532788-63532807 Msa0341690:intron 40.0%
AGAATCCTAATCGAACCACA+GGG - chr2_4:63532789-63532808 Msa0341690:intron 40.0%
ATTTCAGAAGGTTTGACGAC+AGG + chr2_4:63532969-63532988 None:intergenic 40.0%
GCTGCTTCAAATTTAGTTGC+TGG - chr2_4:63533037-63533056 Msa0341690:CDS 40.0%
CCTGTTTCAGTTGGATTACT+TGG + chr2_4:63533327-63533346 None:intergenic 40.0%
CCAAGTAATCCAACTGAAAC+AGG - chr2_4:63533324-63533343 Msa0341690:intron 40.0%
AGTAATCCAACTGAAACAGG+TGG - chr2_4:63533327-63533346 Msa0341690:intron 40.0%
GTAATCCAACTGAAACAGGT+GGG - chr2_4:63533328-63533347 Msa0341690:intron 40.0%
TAATCCAACTGAAACAGGTG+GGG - chr2_4:63533329-63533348 Msa0341690:intron 40.0%
TATTCAAGGGAGACGAGTTA+GGG + chr2_4:63533380-63533399 None:intergenic 40.0%
ATATTCAAGGGAGACGAGTT+AGG + chr2_4:63533381-63533400 None:intergenic 40.0%
TCCCTTGAATATGTTTCCAC+AGG - chr2_4:63533389-63533408 Msa0341690:intron 40.0%
CTCTTTCAGGAGACAATTTC+TGG - chr2_4:63533504-63533523 Msa0341690:intron 40.0%
TGAAACAAAATGCCTACCTG+GGG + chr2_4:63533573-63533592 None:intergenic 40.0%
GATGAAACAAAATGCCTACC+TGG + chr2_4:63533575-63533594 None:intergenic 40.0%
ATCCAATCCACAAATTCTCC+AGG - chr2_4:63533679-63533698 Msa0341690:intron 40.0%
TACCTGGAGAATTTGTGGAT+TGG + chr2_4:63533684-63533703 None:intergenic 40.0%
TCAATAAGTCTCAAGAGACC+TGG + chr2_4:63533819-63533838 None:intergenic 40.0%
AAATGGAGAGGATCTTGACT+CGG + chr2_4:63534032-63534051 None:intergenic 40.0%
AGATCTCCATTCCTACCATT+TGG - chr2_4:63534053-63534072 Msa0341690:intron 40.0%
ATCTCTCCAAATGGTAGGAA+TGG + chr2_4:63534062-63534081 None:intergenic 40.0%
AAACATGGCAAAGACGAGTT+AGG + chr2_4:63534214-63534233 None:intergenic 40.0%
TTGCCATGTTTGTGACATGA+AGG - chr2_4:63534223-63534242 Msa0341690:intron 40.0%
!!! GGTAATGTTTTGACCTGTTG+TGG - chr2_4:63534244-63534263 Msa0341690:intron 40.0%
TAAATGCTACAGATGCTTCC+TGG + chr2_4:63534278-63534297 None:intergenic 40.0%
CAAAAATGCCTCTATGACAG+AGG + chr2_4:63534603-63534622 None:intergenic 40.0%
!!! CTCTGTCATAGAGGCATTTT+TGG - chr2_4:63534601-63534620 Msa0341690:CDS 40.0%
CTACTTACTGGAAAATGCTG+GGG - chr2_4:63534655-63534674 Msa0341690:CDS 40.0%
! AGGCTTTTCTCCTTTTTGCA+AGG - chr2_4:63534726-63534745 Msa0341690:intron 40.0%
! CTTTTCTCCTTTTTGCAAGG+AGG - chr2_4:63534729-63534748 Msa0341690:intron 40.0%
ATCTTCCCTGATTTAGGCTT+TGG - chr2_4:63534885-63534904 Msa0341690:CDS 40.0%
AGGAACCAAAGCCTAAATCA+GGG + chr2_4:63534893-63534912 None:intergenic 40.0%
ATCTGTTACTCCTCTCCTTT+GGG + chr2_4:63534970-63534989 None:intergenic 40.0%
AATCTGTTACTCCTCTCCTT+TGG + chr2_4:63534971-63534990 None:intergenic 40.0%
GAGTAACAGATTGTGGAGTT+AGG - chr2_4:63534979-63534998 Msa0341690:five_prime_UTR 40.0%
TCAGCAATTGTTGTCCGCAT+GGG + chr2_4:63530237-63530256 None:intergenic 45.0%
ATCAGCAATTGTTGTCCGCA+TGG + chr2_4:63530238-63530257 None:intergenic 45.0%
! GGGCTGAATTTTGCACTATC+AGG - chr2_4:63530410-63530429 Msa0341690:intron 45.0%
CGACAGAGGAATAGAGTGAA+AGG + chr2_4:63530465-63530484 None:intergenic 45.0%
GTGATGAATGTTGTCGACAG+AGG + chr2_4:63530479-63530498 None:intergenic 45.0%
TCGAAAAAGAGCTGTAGCGA+TGG - chr2_4:63530562-63530581 Msa0341690:intron 45.0%
TGTGTGAGCAAGAACACAAC+AGG + chr2_4:63530964-63530983 None:intergenic 45.0%
GAGCCCCTAAAATGCTATAG+TGG + chr2_4:63531185-63531204 None:intergenic 45.0%
AAGCAACATGTGAGAGAAGC+GGG + chr2_4:63531445-63531464 None:intergenic 45.0%
GAAGCAACATGTGAGAGAAG+CGG + chr2_4:63531446-63531465 None:intergenic 45.0%
!!! GAGGGTGACGTAGTGTTTTT+TGG + chr2_4:63531606-63531625 None:intergenic 45.0%
TGCTGGAACTTCATCTACTC+AGG - chr2_4:63531744-63531763 Msa0341690:CDS 45.0%
!! TCTGGTGTTGGCACAGTTAT+AGG + chr2_4:63531871-63531890 None:intergenic 45.0%
TGTACTACAGGTGTGGAATC+TGG + chr2_4:63531889-63531908 None:intergenic 45.0%
ACTCACTGAGTCTGTACTAC+AGG + chr2_4:63531901-63531920 None:intergenic 45.0%
GTTGTGGCACCTACAAAGTA+TGG - chr2_4:63532024-63532043 Msa0341690:intron 45.0%
AACTTAGGGTTGGGCAGAAT+TGG + chr2_4:63532397-63532416 None:intergenic 45.0%
AATTCTGCCCAACCCTAAGT+TGG - chr2_4:63532396-63532415 Msa0341690:intron 45.0%
ATTCTGCCCAACCCTAAGTT+GGG - chr2_4:63532397-63532416 Msa0341690:intron 45.0%
TACAACCCCAACTTAGGGTT+GGG + chr2_4:63532406-63532425 None:intergenic 45.0%
CTGTCTCATTGCCATGAGAA+AGG - chr2_4:63532465-63532484 Msa0341690:intron 45.0%
GTGATGTCTGAATGCAGTCA+GGG + chr2_4:63532516-63532535 None:intergenic 45.0%
AGTGATGTCTGAATGCAGTC+AGG + chr2_4:63532517-63532536 None:intergenic 45.0%
ATCTAGTACAGCATTCCCTG+TGG + chr2_4:63532807-63532826 None:intergenic 45.0%
GACGACAGGATAGAGGTAAA+TGG + chr2_4:63532955-63532974 None:intergenic 45.0%
AAGGTTTGACGACAGGATAG+AGG + chr2_4:63532962-63532981 None:intergenic 45.0%
CAACAACTTATGGACATGGG+TGG - chr2_4:63533082-63533101 Msa0341690:intron 45.0%
AAGTAATCTACAGCACGCTC+TGG + chr2_4:63533163-63533182 None:intergenic 45.0%
! ACAGCAATTTCTGCTGCTTC+AGG + chr2_4:63533288-63533307 None:intergenic 45.0%
AGCAGCAGAAATTGCTGTAC+CGG - chr2_4:63533290-63533309 Msa0341690:intron 45.0%
!! TTACTTGGGTATTGAGCAGC+CGG + chr2_4:63533312-63533331 None:intergenic 45.0%
! GTTTCAAGCATTGCGGACAA+TGG - chr2_4:63533652-63533671 Msa0341690:intron 45.0%
TCTATTGCAGCCTGTACTTC+AGG - chr2_4:63533776-63533795 Msa0341690:intron 45.0%
! CCTGGATTAGATACCACAAC+AGG + chr2_4:63534260-63534279 None:intergenic 45.0%
CCTGTTGTGGTATCTAATCC+AGG - chr2_4:63534257-63534276 Msa0341690:intron 45.0%
TACCTATGACATGCAGCTAG+AGG - chr2_4:63534559-63534578 Msa0341690:intron 45.0%
TGATAGAGCCTCTGTCATAG+AGG - chr2_4:63534592-63534611 Msa0341690:CDS 45.0%
ATGTGACCGTGATGAGCAAT+TGG - chr2_4:63534625-63534644 Msa0341690:CDS 45.0%
ATTGGCAGCCAACTACTTAC+TGG - chr2_4:63534643-63534662 Msa0341690:CDS 45.0%
! GGAAAATGCTGGGGATTTTG+AGG - chr2_4:63534664-63534683 Msa0341690:CDS 45.0%
AAACCACCCTCCTTGCAAAA+AGG + chr2_4:63534739-63534758 None:intergenic 45.0%
GAGGAACCAAAGCCTAAATC+AGG + chr2_4:63534894-63534913 None:intergenic 45.0%
! TTTTTCTCTCCCCAAAGGAG+AGG - chr2_4:63534957-63534976 Msa0341690:five_prime_UTR 45.0%
TCTGTTACTCCTCTCCTTTG+GGG + chr2_4:63534969-63534988 None:intergenic 45.0%
AGGAGAGGAGTAACAGATTG+TGG - chr2_4:63534972-63534991 Msa0341690:five_prime_UTR 45.0%
ATGTACAGGGGAAAATGGAG+AGG + chr2_4:63535007-63535026 None:intergenic 45.0%
!!! TTCTATTATAAATAATTTTT+CGG - chr2_4:63533985-63534004 Msa0341690:intron 5.0%
CTTCATGACTGACACCGATC+CGG + chr2_4:63530004-63530023 None:intergenic 50.0%
CTAGCAGAATAGTGTAGCCG+TGG - chr2_4:63530693-63530712 Msa0341690:intron 50.0%
!!! GGAGTTTGGTGCAACGCTTT+TGG - chr2_4:63530717-63530736 Msa0341690:intron 50.0%
TATTGCTGACAGCGGTTTGC+AGG + chr2_4:63530743-63530762 None:intergenic 50.0%
CAAACCGCTGTCAGCAATAC+CGG - chr2_4:63530744-63530763 Msa0341690:intron 50.0%
ACAACCGGTATTGCTGACAG+CGG + chr2_4:63530751-63530770 None:intergenic 50.0%
! GTCAGCAATACCGGTTGTTG+CGG - chr2_4:63530753-63530772 Msa0341690:intron 50.0%
!! TCCTAATAGCGGACGCGATA+GGG + chr2_4:63530787-63530806 None:intergenic 50.0%
!! ATCCTAATAGCGGACGCGAT+AGG + chr2_4:63530788-63530807 None:intergenic 50.0%
CGCGTCCGCTATTAGGATTT+CGG - chr2_4:63530790-63530809 Msa0341690:intron 50.0%
TAATCCCAGACAGTGTCACG+TGG + chr2_4:63531212-63531231 None:intergenic 50.0%
CTAAATTGGCCCCAGAGAGA+GGG + chr2_4:63531624-63531643 None:intergenic 50.0%
AGTAAAGCCTTGGGATCTGC+TGG - chr2_4:63531727-63531746 Msa0341690:intron 50.0%
TGAAGTTCCAGCAGATCCCA+AGG + chr2_4:63531737-63531756 None:intergenic 50.0%
!! GGTGTTGGCACAGTTATAGG+TGG + chr2_4:63531868-63531887 None:intergenic 50.0%
ACAGGTGTGGAATCTGGTGT+TGG + chr2_4:63531883-63531902 None:intergenic 50.0%
CTGAGTCTGTACTACAGGTG+TGG + chr2_4:63531896-63531915 None:intergenic 50.0%
! TTTGTAGGTGCCACAACTGC+AGG + chr2_4:63532021-63532040 None:intergenic 50.0%
TAAGGGCAAGCCAATAGACC+AGG - chr2_4:63532287-63532306 Msa0341690:intron 50.0%
CAAGCCAATAGACCAGGTCA+TGG - chr2_4:63532293-63532312 Msa0341690:intron 50.0%
!! CGTTCAAAGCTCTGAAGGGA+AGG - chr2_4:63532371-63532390 Msa0341690:intron 50.0%
TTCTGCCCAACCCTAAGTTG+GGG - chr2_4:63532398-63532417 Msa0341690:intron 50.0%
GTACAACCCCAACTTAGGGT+TGG + chr2_4:63532407-63532426 None:intergenic 50.0%
! CACAAGTCTGGCCTTTCTCA+TGG + chr2_4:63532479-63532498 None:intergenic 50.0%
GCATTCCCTGTGGTTCGATT+AGG + chr2_4:63532797-63532816 None:intergenic 50.0%
CAACTTATGGACATGGGTGG+TGG - chr2_4:63533085-63533104 Msa0341690:intron 50.0%
! AGCACGAAGAGCACGATTGA+CGG + chr2_4:63533128-63533147 None:intergenic 50.0%
TCACTACCGGAGTTGTTCCT+GGG - chr2_4:63533352-63533371 Msa0341690:intron 50.0%
!! CAGGAGACAATTTCTGGTGC+TGG - chr2_4:63533510-63533529 Msa0341690:intron 50.0%
!! ACAATTTCTGGTGCTGGAGC+TGG - chr2_4:63533516-63533535 Msa0341690:intron 50.0%
! CTGGTTCGCTTGACTTCTTG+AGG - chr2_4:63533541-63533560 Msa0341690:intron 50.0%
CTTCTTGAGGAACAATCCCC+AGG - chr2_4:63533554-63533573 Msa0341690:intron 50.0%
TTGAGGAACAATCCCCAGGT+AGG - chr2_4:63533558-63533577 Msa0341690:intron 50.0%
TTTCCGAGCTCCTGAAGTAC+AGG + chr2_4:63533789-63533808 None:intergenic 50.0%
GAGCTCGGAAAGCAAAATCC+AGG - chr2_4:63533798-63533817 Msa0341690:intron 50.0%
! AACCCATGGACGGTACTGAA+GGG - chr2_4:63533874-63533893 Msa0341690:intron 50.0%
TGATGTTGGGACCCACTTGT+TGG - chr2_4:63534112-63534131 Msa0341690:intron 50.0%
TGTGGGTCCTACCAACAAGT+GGG + chr2_4:63534126-63534145 None:intergenic 50.0%
ATGTGGGTCCTACCAACAAG+TGG + chr2_4:63534127-63534146 None:intergenic 50.0%
GGCGTCACATTAACAGCATG+AGG + chr2_4:63534398-63534417 None:intergenic 50.0%
AGCCTCTAGCTGCATGTCAT+AGG + chr2_4:63534564-63534583 None:intergenic 50.0%
TGACATGCAGCTAGAGGCTA+TGG - chr2_4:63534565-63534584 Msa0341690:intron 50.0%
GACATGCAGCTAGAGGCTAT+GGG - chr2_4:63534566-63534585 Msa0341690:intron 50.0%
TGGCTGCCAATTGCTCATCA+CGG + chr2_4:63534634-63534653 None:intergenic 50.0%
! TCTCCTTTTTGCAAGGAGGG+TGG - chr2_4:63534733-63534752 Msa0341690:intron 50.0%
! AAGGGAAGAGAAGAGCGTGG+TGG - chr2_4:63529915-63529934 Msa0341690:three_prime_UTR 55.0%
! AGGGAAGAGAAGAGCGTGGT+GGG - chr2_4:63529916-63529935 Msa0341690:three_prime_UTR 55.0%
!! GAGCGTGGTGGGTGAAAAAG+AGG - chr2_4:63529927-63529946 Msa0341690:three_prime_UTR 55.0%
GACACCGATCCGGAATCGAA+TGG + chr2_4:63529994-63530013 None:intergenic 55.0%
GCAGAATAGTGTAGCCGTGG+TGG - chr2_4:63530696-63530715 Msa0341690:intron 55.0%
! AGTGTAGCCGTGGTGGAGTT+TGG - chr2_4:63530703-63530722 Msa0341690:intron 55.0%
CGTTGCACCAAACTCCACCA+CGG + chr2_4:63530713-63530732 None:intergenic 55.0%
AGCACCACGTGACACTGTCT+GGG - chr2_4:63531205-63531224 Msa0341690:intron 55.0%
ACACTACGTCACCCTCTCTC+TGG - chr2_4:63531610-63531629 Msa0341690:CDS 55.0%
CACTACGTCACCCTCTCTCT+GGG - chr2_4:63531611-63531630 Msa0341690:CDS 55.0%
ACTACGTCACCCTCTCTCTG+GGG - chr2_4:63531612-63531631 Msa0341690:CDS 55.0%
CCTAAATTGGCCCCAGAGAG+AGG + chr2_4:63531625-63531644 None:intergenic 55.0%
!! CCTCTCTCTGGGGCCAATTT+AGG - chr2_4:63531622-63531641 Msa0341690:CDS 55.0%
CAACGCATCTCCTGCAGTTG+TGG - chr2_4:63532008-63532027 Msa0341690:intron 55.0%
GTGACCCCACCTGTTTCAGT+TGG + chr2_4:63533336-63533355 None:intergenic 55.0%
GAAACAGGTGGGGTCACTAC+CGG - chr2_4:63533339-63533358 Msa0341690:intron 55.0%
GTCACTACCGGAGTTGTTCC+TGG - chr2_4:63533351-63533370 Msa0341690:intron 55.0%
CACTACCGGAGTTGTTCCTG+GGG - chr2_4:63533353-63533372 Msa0341690:intron 55.0%
CAGCCTGTACTTCAGGAGCT+CGG - chr2_4:63533783-63533802 Msa0341690:intron 55.0%
! GAACCCATGGACGGTACTGA+AGG - chr2_4:63533873-63533892 Msa0341690:intron 55.0%
CACCCTTCAGTACCGTCCAT+GGG + chr2_4:63533879-63533898 None:intergenic 55.0%
TCACCCTTCAGTACCGTCCA+TGG + chr2_4:63533880-63533899 None:intergenic 55.0%
! GTTGGGACCCACTTGTTGGT+AGG - chr2_4:63534116-63534135 Msa0341690:intron 55.0%
TAATGTGACGCCAGCTGAGC+AGG - chr2_4:63534406-63534425 Msa0341690:intron 55.0%
TGAGCAGGAGGCAATCGGAA+GGG - chr2_4:63534421-63534440 Msa0341690:intron 55.0%
GGGAAGGGAAGAGAAGAGCG+TGG - chr2_4:63529912-63529931 Msa0341690:three_prime_UTR 60.0%
GGCATTAGGGCCGCAACAAC+CGG + chr2_4:63530766-63530785 None:intergenic 60.0%
! GCGGACGCGATAGGGCATTA+GGG + chr2_4:63530779-63530798 None:intergenic 60.0%
! AGCGGACGCGATAGGGCATT+AGG + chr2_4:63530780-63530799 None:intergenic 60.0%
GCCCTATCGCGTCCGCTATT+AGG - chr2_4:63530783-63530802 Msa0341690:intron 60.0%
CAGCACCACGTGACACTGTC+TGG - chr2_4:63531204-63531223 Msa0341690:intron 60.0%
! GAGAAGCGGGCTCCAAATGC+AGG + chr2_4:63531432-63531451 None:intergenic 60.0%
AGGGACCCCAGGAACAACTC+CGG + chr2_4:63533361-63533380 None:intergenic 60.0%
CCAGCTGAGCAGGAGGCAAT+CGG - chr2_4:63534416-63534435 Msa0341690:intron 60.0%
CTGAGCAGGAGGCAATCGGA+AGG - chr2_4:63534420-63534439 Msa0341690:intron 60.0%
! TGGACATGGGTGGTGGCAGC+TGG - chr2_4:63533092-63533111 Msa0341690:intron 65.0%
! GGACATGGGTGGTGGCAGCT+GGG - chr2_4:63533093-63533112 Msa0341690:intron 65.0%
GGAGACGAGTTAGGGACCCC+AGG + chr2_4:63533372-63533391 None:intergenic 65.0%
! TCTGGTGCTGGAGCTGGAGC+TGG - chr2_4:63533522-63533541 Msa0341690:intron 65.0%
TGTGACGCCAGCTGAGCAGG+AGG - chr2_4:63534409-63534428 Msa0341690:intron 65.0%
CCGATTGCCTCCTGCTCAGC+TGG + chr2_4:63534419-63534438 None:intergenic 65.0%
! TGGGTGGTGGCAGCTGGGAC+AGG - chr2_4:63533098-63533117 Msa0341690:intron 70.0%
! GGGTGGTGGCAGCTGGGACA+GGG - chr2_4:63533099-63533118 Msa0341690:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63529886 63535042 63529886 ID=Msa0341690;Name=Msa0341690
chr2_4 mRNA 63529886 63535042 63529886 ID=Msa0341690-mRNA-1;Parent=Msa0341690;Name=Msa0341690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=132|0.9|1|1|1|1|11|351|353
chr2_4 exon 63529886 63530353 63529886 ID=Msa0341690-mRNA-1:exon:20311;Parent=Msa0341690-mRNA-1
chr2_4 exon 63530486 63530564 63530486 ID=Msa0341690-mRNA-1:exon:20310;Parent=Msa0341690-mRNA-1
chr2_4 exon 63531033 63531142 63531033 ID=Msa0341690-mRNA-1:exon:20309;Parent=Msa0341690-mRNA-1
chr2_4 exon 63531228 63531275 63531228 ID=Msa0341690-mRNA-1:exon:20308;Parent=Msa0341690-mRNA-1
chr2_4 exon 63531353 63531415 63531353 ID=Msa0341690-mRNA-1:exon:20307;Parent=Msa0341690-mRNA-1
chr2_4 exon 63531518 63531649 63531518 ID=Msa0341690-mRNA-1:exon:20306;Parent=Msa0341690-mRNA-1
chr2_4 exon 63531739 63531916 63531739 ID=Msa0341690-mRNA-1:exon:20305;Parent=Msa0341690-mRNA-1
chr2_4 exon 63532888 63532932 63532888 ID=Msa0341690-mRNA-1:exon:20304;Parent=Msa0341690-mRNA-1
chr2_4 exon 63533014 63533075 63533014 ID=Msa0341690-mRNA-1:exon:20303;Parent=Msa0341690-mRNA-1
chr2_4 exon 63534583 63534744 63534583 ID=Msa0341690-mRNA-1:exon:20302;Parent=Msa0341690-mRNA-1
chr2_4 exon 63534845 63535042 63534845 ID=Msa0341690-mRNA-1:exon:20301;Parent=Msa0341690-mRNA-1
chr2_4 five_prime_UTR 63534911 63535042 63534911 ID=Msa0341690-mRNA-1:five_prime_utr;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63534845 63534910 63534845 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63534583 63534744 63534583 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63533014 63533075 63533014 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63532888 63532932 63532888 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63531739 63531916 63531739 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63531518 63531649 63531518 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63531353 63531415 63531353 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63531228 63531275 63531228 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63531033 63531142 63531033 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63530486 63530564 63530486 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 CDS 63530237 63530353 63530237 ID=Msa0341690-mRNA-1:cds;Parent=Msa0341690-mRNA-1
chr2_4 three_prime_UTR 63529886 63530236 63529886 ID=Msa0341690-mRNA-1:three_prime_utr;Parent=Msa0341690-mRNA-1
Gene Sequence

>Msa0341690

ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGACCGTTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGTAGTACAGACTCAATCTGCAAACAACAACGCATCTCCTGCAGTTGTGGCACCTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCTGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTTATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTTAATGTGACGCCAGCTGAGCAGGAGGCAATCGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA

Protein sequence

>Msa0341690

MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKTVSNPPITVPTPDSTPVVQTQSANNNASPAVVAPTNVTTDTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEIAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*