AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398920 MtrunA17_Chr3g0087151 84.307 274 21 2 1 274 1 252 5.91e-125 356
Msa0398920 MtrunA17_Chr3g0087211 57.500 360 67 7 1 274 1 360 5.37e-93 278
Msa0398920 MtrunA17_Chr3g0087231 58.671 346 69 6 1 274 1 344 3.03e-92 276
Msa0398920 MtrunA17_Chr3g0087041 78.392 199 21 2 1 199 1 177 2.20e-79 238
Msa0398920 MtrunA17_Chr3g0087041 74.342 152 32 4 128 274 35 184 3.75e-44 148
Msa0398920 MtrunA17_Chr3g0087161 51.402 107 47 2 1 107 1 102 6.91e-24 93.6
Msa0398920 MtrunA17_Chr4g0057451 19.767 258 184 7 28 267 203 455 4.01e-15 74.7
Msa0398920 MtrunA17_Chr4g0057451 18.750 256 187 6 28 267 18 268 2.34e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398920 AT5G09530.1 58.099 284 73 6 26 268 30 308 3.57e-65 208
Msa0398920 AT5G09530.1 60.223 269 68 8 35 267 100 365 2.10e-59 193
Msa0398920 AT5G09530.1 59.341 91 29 2 35 119 282 370 1.98e-14 72.8
Msa0398920 AT5G09520.1 45.390 141 56 2 7 147 9 128 1.43e-23 93.2
Msa0398920 AT5G09520.1 57.576 99 31 2 174 266 37 130 4.80e-18 78.6
Msa0398920 AT5G09520.1 56.190 105 36 3 135 239 33 127 1.77e-17 77.0
Msa0398920 AT5G09520.1 55.670 97 38 1 152 248 37 128 5.23e-17 75.9
Msa0398920 AT5G09520.1 57.732 97 34 2 110 206 41 130 6.98e-17 75.5
Msa0398920 AT5G09520.1 55.914 93 34 1 182 274 34 119 1.22e-14 69.7
Msa0398920 AT5G09520.1 51.961 102 36 3 117 215 37 128 1.02e-11 61.6

Find 95 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTACCTTTGGTATTTC+TGG 0.077856 3_2:-21048287 None:intergenic
TCAGGTATCTTTGAAATTTC+TGG 0.104685 3_2:-21048017 None:intergenic
AGCTCAGGTTTGGGCAATTC+AGG 0.197717 3_2:-21047969 None:intergenic
GGAACATCTTTAGGAGTTTC+AGG 0.202854 3_2:-21048410 None:intergenic
TCAGGTACCTTAGGCAATTC+TGG 0.231204 3_2:-21047810 None:intergenic
TCAGGTACCTTAGGTAATTC+TGG 0.242157 3_2:-21047843 None:intergenic
TTAGGAGTTTCAGGGAATTT+AGG 0.242346 3_2:-21048401 None:intergenic
AACTCTAGCTTTGGTAATTC+AGG 0.247874 3_2:-21048305 None:intergenic
AATTCAGGGGCAATAAATTT+AGG 0.255231 3_2:-21048059 None:intergenic
AATTCTGGCTTTGGCAATTC+AGG 0.265103 3_2:-21047828 None:intergenic
GACTTTAGGTAGCTCAGGTT+TGG 0.265600 3_2:-21047979 None:intergenic
AGTTCAGGCTTTGTCAATTC+AGG 0.281138 3_2:-21048338 None:intergenic
TCAGGTACCTTAGGGATATC+TGG 0.288152 3_2:-21048155 None:intergenic
AGCTTAGGCTTTGGAAGTTC+AGG 0.295887 3_2:-21047861 None:intergenic
TTAGGTAATTCAGGAATCTT+AGG 0.302765 3_2:-21047786 None:intergenic
ATAGACAATTCGGGGACTTT+AGG 0.311738 3_2:-21047993 None:intergenic
AATTTAGGTAACTCAGGTTT+TGG 0.311779 3_2:-21048044 None:intergenic
AGTATAGCTAGAATGATTAA+TGG 0.316206 3_2:-21047657 None:intergenic
TTTGTCAATTCAGGTATCTT+AGG 0.317967 3_2:-21048329 None:intergenic
TACCTTTGGTATTTCTGGCT+TGG 0.319635 3_2:-21048282 None:intergenic
AATTTAGGTAACTCGGGTTT+TGG 0.322053 3_2:-21048386 None:intergenic
TTTGGCAATTCAGGTACTTT+AGG 0.325312 3_2:-21048098 None:intergenic
ACCTTTGGTATTTCTGGCTT+GGG 0.325986 3_2:-21048281 None:intergenic
GTATTGGTTGGAACATCTTT+AGG 0.328990 3_2:-21048419 None:intergenic
TTAGGCAACTCGGGAACTTT+AGG 0.329308 3_2:-21047942 None:intergenic
ACCATAGGTAGTTCATGTTT+TGG 0.332450 3_2:-21048116 None:intergenic
TACCTTAGGGATATCTGGTT+TGG 0.332667 3_2:-21048150 None:intergenic
TTTGGTAATTCAGGTACCTT+AGG 0.339853 3_2:-21048164 None:intergenic
ACTTTAGGTAGCTCGGGTTT+TGG 0.353287 3_2:-21048083 None:intergenic
ATAGGTGGAAAATCAAGTTT+TGG 0.353325 3_2:-21047747 None:intergenic
ACCTTAGGTAGCTCGGGTTT+TGG 0.355137 3_2:-21048182 None:intergenic
ACCTTAGGTAGCTCGGGTTT+TGG 0.355137 3_2:-21048215 None:intergenic
ACTTTGGGAAACTCGGGTTT+TGG 0.357337 3_2:-21047909 None:intergenic
TTAGGCAACTCAGGAACTTT+GGG 0.358876 3_2:-21047924 None:intergenic
ACTTTAGGTAGCTCAGGTTT+GGG 0.365399 3_2:-21047978 None:intergenic
AATTTCTGGCATAGACAATT+CGG 0.365865 3_2:-21048003 None:intergenic
ACCTTAGGTAATTCTGGCTT+TGG 0.366886 3_2:-21047837 None:intergenic
TTGGGCAACTCAGAGACTTT+TGG 0.369313 3_2:-21048263 None:intergenic
ACATTAACTTTAGGTAGTTC+AGG 0.370017 3_2:-21048353 None:intergenic
GGAAGCTCAGGCTTTGGTAT+AGG 0.376080 3_2:-21047765 None:intergenic
AATTCTGGCTTAGGTAATTC+AGG 0.380278 3_2:-21047795 None:intergenic
AGTTCAGGGACATTAACTTT+AGG 0.387475 3_2:-21048362 None:intergenic
CTCAGGAACTTTGGGAAACT+CGG 0.389158 3_2:-21047916 None:intergenic
TTTAGGCAACTCAGGAACTT+TGG 0.393082 3_2:-21047925 None:intergenic
ATCTTAGGAAGCTCAGGCTT+TGG 0.394512 3_2:-21047771 None:intergenic
ATTTCTGGCATAGACAATTC+GGG 0.397522 3_2:-21048002 None:intergenic
AACTTAGGTAGCTTAGGCTT+TGG 0.398867 3_2:-21047870 None:intergenic
TTTGGTAATTCAGGTACCTT+TGG 0.399783 3_2:-21048296 None:intergenic
TTTGGAAGTTCAGGTACCTT+AGG 0.422522 3_2:-21047852 None:intergenic
ACCTTAGGGATATCTGGTTT+GGG 0.423518 3_2:-21048149 None:intergenic
TTCAGGTACTTTAGGTAGCT+CGG 0.423548 3_2:-21048090 None:intergenic
ATCTTAGGTAACTCTAGCTT+TGG 0.432161 3_2:-21048314 None:intergenic
ACATTAAACTTAGGTAGCTT+AGG 0.434908 3_2:-21047876 None:intergenic
AGTTCCAACTTAAGGAGTAT+TGG 0.438613 3_2:-21048435 None:intergenic
AGAGTATTACAATGGTTGTC+GGG 0.440611 3_2:+21047688 Msa0398920:CDS
TTTGGCAATTCAGGTACCTT+AGG 0.442441 3_2:-21047819 None:intergenic
TTTGGTAATTCAGGTACCTT+AGG 0.444525 3_2:-21048197 None:intergenic
TTTGGTAATTCAGGTACCTT+AGG 0.444525 3_2:-21048230 None:intergenic
TTCAGGTACCTTAGGTAGCT+CGG 0.444849 3_2:-21048189 None:intergenic
TTCAGGTACCTTAGGTAGCT+CGG 0.444849 3_2:-21048222 None:intergenic
TCAGGAATCTTAGGAAGCTC+AGG 0.453881 3_2:-21047777 None:intergenic
ACCTTAGGCAATTCTGGCTT+AGG 0.463421 3_2:-21047804 None:intergenic
GCCAAAACATGAACTACCTA+TGG 0.466545 3_2:+21048115 Msa0398920:CDS
TCGGGGACTTTAGGTAGCTC+AGG 0.467048 3_2:-21047984 None:intergenic
TTGGGCAATTCAGGGAACTT+AGG 0.475381 3_2:-21047960 None:intergenic
TTCAGGGAATTTAGGTAACT+CGG 0.478958 3_2:-21048393 None:intergenic
GACAACCATTGTAATACTCT+TGG 0.484545 3_2:-21047685 None:intergenic
AATTCAGGAACATTAAACTT+AGG 0.490699 3_2:-21047885 None:intergenic
TCAGGTACTTTAGGTAGCTC+GGG 0.491125 3_2:-21048089 None:intergenic
GCAATAAATTTAGGTAACTC+AGG 0.493164 3_2:-21048050 None:intergenic
TTGGTAATTCAGGTACCTTA+GGG 0.494321 3_2:-21048163 None:intergenic
GAACATCTTTAGGAGTTTCA+GGG 0.495266 3_2:-21048409 None:intergenic
TTCAGGGAACTTAGGCAACT+CGG 0.499436 3_2:-21047952 None:intergenic
TCAGGTACCTTAGGTAGCTC+GGG 0.499460 3_2:-21048188 None:intergenic
TCAGGTACCTTAGGTAGCTC+GGG 0.499460 3_2:-21048221 None:intergenic
GCTCAGGTTTGGGCAATTCA+GGG 0.523757 3_2:-21047968 None:intergenic
CCAACTTAAGGAGTATTGGT+TGG 0.525013 3_2:-21048431 None:intergenic
AAGAGTATTACAATGGTTGT+CGG 0.526376 3_2:+21047687 Msa0398920:CDS
TCAGGAACTTTGGGAAACTC+GGG 0.528389 3_2:-21047915 None:intergenic
AGCTCAGGCTTTGGTATAGG+TGG 0.530445 3_2:-21047762 None:intergenic
TCAGGGAATTTAGGTAACTC+GGG 0.549724 3_2:-21048392 None:intergenic
TGAGAAATTGATGTAAGCCA+TGG 0.552118 3_2:-21047622 None:intergenic
TCGGGAACTTTAGGCAACTC+AGG 0.569614 3_2:-21047933 None:intergenic
ACCAAAACCCGAGCTACCTA+AGG 0.574183 3_2:+21048181 Msa0398920:CDS
ACCAAAACCCGAGCTACCTA+AGG 0.574183 3_2:+21048214 Msa0398920:CDS
TCAGGGAACTTAGGCAACTC+GGG 0.582113 3_2:-21047951 None:intergenic
TTTCTGGCATAGACAATTCG+GGG 0.596116 3_2:-21048001 None:intergenic
GCCAAAGCCAGAATTACCTA+AGG 0.599842 3_2:+21047836 Msa0398920:CDS
ACCTAAGCCAGAATTGCCTA+AGG 0.603337 3_2:+21047803 Msa0398920:CDS
TTGGGCAACTCAGAGACCAT+AGG 0.618309 3_2:-21048131 None:intergenic
GAGTATTACAATGGTTGTCG+GGG 0.633099 3_2:+21047689 Msa0398920:CDS
GCCCAAACCAGATATCCCTA+AGG 0.649847 3_2:+21048148 Msa0398920:CDS
GTCAGCCAAGAGTATTACAA+TGG 0.663719 3_2:+21047680 Msa0398920:CDS
GCCCAAGCCAGAAATACCAA+AGG 0.675655 3_2:+21048280 Msa0398920:CDS
TCTAGAGTCGAACATACCTG+AGG 0.701502 3_2:+21047722 Msa0398920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATAGCTAGAATGATTAA+TGG - chr3_2:21047660-21047679 None:intergenic 25.0%
! AATTCAGGAACATTAAACTT+AGG - chr3_2:21047888-21047907 None:intergenic 25.0%
! AGTATAGCTAGAATGATTAA+TGG - chr3_2:21047660-21047679 None:intergenic 25.0%
! AATTCAGGAACATTAAACTT+AGG - chr3_2:21047888-21047907 None:intergenic 25.0%
!! AAGAGTATTACAATGGTTGT+CGG + chr3_2:21047687-21047706 Msa0398920:CDS 30.0%
! ATAGGTGGAAAATCAAGTTT+TGG - chr3_2:21047750-21047769 None:intergenic 30.0%
TTAGGTAATTCAGGAATCTT+AGG - chr3_2:21047789-21047808 None:intergenic 30.0%
ACATTAAACTTAGGTAGCTT+AGG - chr3_2:21047879-21047898 None:intergenic 30.0%
!! AATTTCTGGCATAGACAATT+CGG - chr3_2:21048006-21048025 None:intergenic 30.0%
!! TCAGGTATCTTTGAAATTTC+TGG - chr3_2:21048020-21048039 None:intergenic 30.0%
! AATTTAGGTAACTCAGGTTT+TGG - chr3_2:21048047-21048066 None:intergenic 30.0%
GCAATAAATTTAGGTAACTC+AGG - chr3_2:21048053-21048072 None:intergenic 30.0%
AATTCAGGGGCAATAAATTT+AGG - chr3_2:21048062-21048081 None:intergenic 30.0%
TTTGTCAATTCAGGTATCTT+AGG - chr3_2:21048332-21048351 None:intergenic 30.0%
ACATTAACTTTAGGTAGTTC+AGG - chr3_2:21048356-21048375 None:intergenic 30.0%
!! AAGAGTATTACAATGGTTGT+CGG + chr3_2:21047687-21047706 Msa0398920:CDS 30.0%
! ATAGGTGGAAAATCAAGTTT+TGG - chr3_2:21047750-21047769 None:intergenic 30.0%
TTAGGTAATTCAGGAATCTT+AGG - chr3_2:21047789-21047808 None:intergenic 30.0%
ACATTAAACTTAGGTAGCTT+AGG - chr3_2:21047879-21047898 None:intergenic 30.0%
!! AATTTCTGGCATAGACAATT+CGG - chr3_2:21048006-21048025 None:intergenic 30.0%
!! TCAGGTATCTTTGAAATTTC+TGG - chr3_2:21048020-21048039 None:intergenic 30.0%
! AATTTAGGTAACTCAGGTTT+TGG - chr3_2:21048047-21048066 None:intergenic 30.0%
GCAATAAATTTAGGTAACTC+AGG - chr3_2:21048053-21048072 None:intergenic 30.0%
AATTCAGGGGCAATAAATTT+AGG - chr3_2:21048062-21048081 None:intergenic 30.0%
TTTGTCAATTCAGGTATCTT+AGG - chr3_2:21048332-21048351 None:intergenic 30.0%
ACATTAACTTTAGGTAGTTC+AGG - chr3_2:21048356-21048375 None:intergenic 30.0%
GACAACCATTGTAATACTCT+TGG - chr3_2:21047688-21047707 None:intergenic 35.0%
! AGAGTATTACAATGGTTGTC+GGG + chr3_2:21047688-21047707 Msa0398920:CDS 35.0%
!!! AAATCAAGTTTTGGAACCTC+AGG - chr3_2:21047741-21047760 None:intergenic 35.0%
!! AATTCTGGCTTAGGTAATTC+AGG - chr3_2:21047798-21047817 None:intergenic 35.0%
!! ATTTCTGGCATAGACAATTC+GGG - chr3_2:21048005-21048024 None:intergenic 35.0%
TTTGGCAATTCAGGTACTTT+AGG - chr3_2:21048101-21048120 None:intergenic 35.0%
!!! AGTTCATGTTTTGGCAATTC+AGG - chr3_2:21048110-21048129 None:intergenic 35.0%
! ACCATAGGTAGTTCATGTTT+TGG - chr3_2:21048119-21048138 None:intergenic 35.0%
! TTGGTAATTCAGGTACCTTA+GGG - chr3_2:21048166-21048185 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+TGG - chr3_2:21048167-21048186 None:intergenic 35.0%
!! AACTCTAGCTTTGGTAATTC+AGG - chr3_2:21048308-21048327 None:intergenic 35.0%
! ATCTTAGGTAACTCTAGCTT+TGG - chr3_2:21048317-21048336 None:intergenic 35.0%
AGTTCAGGGACATTAACTTT+AGG - chr3_2:21048365-21048384 None:intergenic 35.0%
! AATTTAGGTAACTCGGGTTT+TGG - chr3_2:21048389-21048408 None:intergenic 35.0%
TTCAGGGAATTTAGGTAACT+CGG - chr3_2:21048396-21048415 None:intergenic 35.0%
TTAGGAGTTTCAGGGAATTT+AGG - chr3_2:21048404-21048423 None:intergenic 35.0%
! GAACATCTTTAGGAGTTTCA+GGG - chr3_2:21048412-21048431 None:intergenic 35.0%
!! GTATTGGTTGGAACATCTTT+AGG - chr3_2:21048422-21048441 None:intergenic 35.0%
GACAACCATTGTAATACTCT+TGG - chr3_2:21047688-21047707 None:intergenic 35.0%
! AGAGTATTACAATGGTTGTC+GGG + chr3_2:21047688-21047707 Msa0398920:CDS 35.0%
!!! AAATCAAGTTTTGGAACCTC+AGG - chr3_2:21047741-21047760 None:intergenic 35.0%
!! AATTCTGGCTTAGGTAATTC+AGG - chr3_2:21047798-21047817 None:intergenic 35.0%
!! ATTTCTGGCATAGACAATTC+GGG - chr3_2:21048005-21048024 None:intergenic 35.0%
TTTGGCAATTCAGGTACTTT+AGG - chr3_2:21048101-21048120 None:intergenic 35.0%
!!! AGTTCATGTTTTGGCAATTC+AGG - chr3_2:21048110-21048129 None:intergenic 35.0%
! ACCATAGGTAGTTCATGTTT+TGG - chr3_2:21048119-21048138 None:intergenic 35.0%
! TTGGTAATTCAGGTACCTTA+GGG - chr3_2:21048166-21048185 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+AGG - chr3_2:21048167-21048186 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+TGG - chr3_2:21048167-21048186 None:intergenic 35.0%
!! AACTCTAGCTTTGGTAATTC+AGG - chr3_2:21048308-21048327 None:intergenic 35.0%
! ATCTTAGGTAACTCTAGCTT+TGG - chr3_2:21048317-21048336 None:intergenic 35.0%
AGTTCAGGGACATTAACTTT+AGG - chr3_2:21048365-21048384 None:intergenic 35.0%
! AATTTAGGTAACTCGGGTTT+TGG - chr3_2:21048389-21048408 None:intergenic 35.0%
TTCAGGGAATTTAGGTAACT+CGG - chr3_2:21048396-21048415 None:intergenic 35.0%
TTAGGAGTTTCAGGGAATTT+AGG - chr3_2:21048404-21048423 None:intergenic 35.0%
! GAACATCTTTAGGAGTTTCA+GGG - chr3_2:21048412-21048431 None:intergenic 35.0%
!! GTATTGGTTGGAACATCTTT+AGG - chr3_2:21048422-21048441 None:intergenic 35.0%
!! GTCAGCCAAGAGTATTACAA+TGG + chr3_2:21047680-21047699 Msa0398920:CDS 40.0%
GAGTATTACAATGGTTGTCG+GGG + chr3_2:21047689-21047708 Msa0398920:CDS 40.0%
TTTGGCAATTCAGGTACCTT+AGG - chr3_2:21047822-21047841 None:intergenic 40.0%
!! AATTCTGGCTTTGGCAATTC+AGG - chr3_2:21047831-21047850 None:intergenic 40.0%
!! ACCTTAGGTAATTCTGGCTT+TGG - chr3_2:21047840-21047859 None:intergenic 40.0%
TCAGGTACCTTAGGTAATTC+TGG - chr3_2:21047846-21047865 None:intergenic 40.0%
TTTGGAAGTTCAGGTACCTT+AGG - chr3_2:21047855-21047874 None:intergenic 40.0%
AACTTAGGTAGCTTAGGCTT+TGG - chr3_2:21047873-21047892 None:intergenic 40.0%
TTAGGCAACTCAGGAACTTT+GGG - chr3_2:21047927-21047946 None:intergenic 40.0%
TTTAGGCAACTCAGGAACTT+TGG - chr3_2:21047928-21047947 None:intergenic 40.0%
ACTTTAGGTAGCTCAGGTTT+GGG - chr3_2:21047981-21048000 None:intergenic 40.0%
ATAGACAATTCGGGGACTTT+AGG - chr3_2:21047996-21048015 None:intergenic 40.0%
! TTTCTGGCATAGACAATTCG+GGG - chr3_2:21048004-21048023 None:intergenic 40.0%
!! AACTCAGGTTTTGGCAATTC+AGG - chr3_2:21048038-21048057 None:intergenic 40.0%
TTCAGGTACTTTAGGTAGCT+CGG - chr3_2:21048093-21048112 None:intergenic 40.0%
GCCAAAACATGAACTACCTA+TGG + chr3_2:21048115-21048134 Msa0398920:CDS 40.0%
! ACCTTAGGGATATCTGGTTT+GGG - chr3_2:21048152-21048171 None:intergenic 40.0%
TACCTTAGGGATATCTGGTT+TGG - chr3_2:21048153-21048172 None:intergenic 40.0%
!! ACCTTTGGTATTTCTGGCTT+GGG - chr3_2:21048284-21048303 None:intergenic 40.0%
!! TACCTTTGGTATTTCTGGCT+TGG - chr3_2:21048285-21048304 None:intergenic 40.0%
TCAGGTACCTTTGGTATTTC+TGG - chr3_2:21048290-21048309 None:intergenic 40.0%
! AGTTCAGGCTTTGTCAATTC+AGG - chr3_2:21048341-21048360 None:intergenic 40.0%
TCAGGGAATTTAGGTAACTC+GGG - chr3_2:21048395-21048414 None:intergenic 40.0%
! GGAACATCTTTAGGAGTTTC+AGG - chr3_2:21048413-21048432 None:intergenic 40.0%
!! GTCAGCCAAGAGTATTACAA+TGG + chr3_2:21047680-21047699 Msa0398920:CDS 40.0%
GAGTATTACAATGGTTGTCG+GGG + chr3_2:21047689-21047708 Msa0398920:CDS 40.0%
TTTGGCAATTCAGGTACCTT+AGG - chr3_2:21047822-21047841 None:intergenic 40.0%
!! AATTCTGGCTTTGGCAATTC+AGG - chr3_2:21047831-21047850 None:intergenic 40.0%
!! ACCTTAGGTAATTCTGGCTT+TGG - chr3_2:21047840-21047859 None:intergenic 40.0%
TCAGGTACCTTAGGTAATTC+TGG - chr3_2:21047846-21047865 None:intergenic 40.0%
TTTGGAAGTTCAGGTACCTT+AGG - chr3_2:21047855-21047874 None:intergenic 40.0%
AACTTAGGTAGCTTAGGCTT+TGG - chr3_2:21047873-21047892 None:intergenic 40.0%
TTAGGCAACTCAGGAACTTT+GGG - chr3_2:21047927-21047946 None:intergenic 40.0%
TTTAGGCAACTCAGGAACTT+TGG - chr3_2:21047928-21047947 None:intergenic 40.0%
ACTTTAGGTAGCTCAGGTTT+GGG - chr3_2:21047981-21048000 None:intergenic 40.0%
ATAGACAATTCGGGGACTTT+AGG - chr3_2:21047996-21048015 None:intergenic 40.0%
! TTTCTGGCATAGACAATTCG+GGG - chr3_2:21048004-21048023 None:intergenic 40.0%
!! AACTCAGGTTTTGGCAATTC+AGG - chr3_2:21048038-21048057 None:intergenic 40.0%
TTCAGGTACTTTAGGTAGCT+CGG - chr3_2:21048093-21048112 None:intergenic 40.0%
GCCAAAACATGAACTACCTA+TGG + chr3_2:21048115-21048134 Msa0398920:CDS 40.0%
! ACCTTAGGGATATCTGGTTT+GGG - chr3_2:21048152-21048171 None:intergenic 40.0%
TACCTTAGGGATATCTGGTT+TGG - chr3_2:21048153-21048172 None:intergenic 40.0%
!! ACCTTTGGTATTTCTGGCTT+GGG - chr3_2:21048284-21048303 None:intergenic 40.0%
!! TACCTTTGGTATTTCTGGCT+TGG - chr3_2:21048285-21048304 None:intergenic 40.0%
TCAGGTACCTTTGGTATTTC+TGG - chr3_2:21048290-21048309 None:intergenic 40.0%
! AGTTCAGGCTTTGTCAATTC+AGG - chr3_2:21048341-21048360 None:intergenic 40.0%
TCAGGGAATTTAGGTAACTC+GGG - chr3_2:21048395-21048414 None:intergenic 40.0%
! GGAACATCTTTAGGAGTTTC+AGG - chr3_2:21048413-21048432 None:intergenic 40.0%
! TCTAGAGTCGAACATACCTG+AGG + chr3_2:21047722-21047741 Msa0398920:CDS 45.0%
ATCTTAGGAAGCTCAGGCTT+TGG - chr3_2:21047774-21047793 None:intergenic 45.0%
TCAGGAATCTTAGGAAGCTC+AGG - chr3_2:21047780-21047799 None:intergenic 45.0%
ACCTAAGCCAGAATTGCCTA+AGG + chr3_2:21047803-21047822 Msa0398920:CDS 45.0%
!! ACCTTAGGCAATTCTGGCTT+AGG - chr3_2:21047807-21047826 None:intergenic 45.0%
TCAGGTACCTTAGGCAATTC+TGG - chr3_2:21047813-21047832 None:intergenic 45.0%
GCCAAAGCCAGAATTACCTA+AGG + chr3_2:21047836-21047855 Msa0398920:CDS 45.0%
!! AGCTTAGGCTTTGGAAGTTC+AGG - chr3_2:21047864-21047883 None:intergenic 45.0%
!! AACTCGGGTTTTGGCAATTC+AGG - chr3_2:21047903-21047922 None:intergenic 45.0%
!! ACTTTGGGAAACTCGGGTTT+TGG - chr3_2:21047912-21047931 None:intergenic 45.0%
! TCAGGAACTTTGGGAAACTC+GGG - chr3_2:21047918-21047937 None:intergenic 45.0%
! CTCAGGAACTTTGGGAAACT+CGG - chr3_2:21047919-21047938 None:intergenic 45.0%
TTAGGCAACTCGGGAACTTT+AGG - chr3_2:21047945-21047964 None:intergenic 45.0%
TTCAGGGAACTTAGGCAACT+CGG - chr3_2:21047955-21047974 None:intergenic 45.0%
TTGGGCAATTCAGGGAACTT+AGG - chr3_2:21047963-21047982 None:intergenic 45.0%
GACTTTAGGTAGCTCAGGTT+TGG - chr3_2:21047982-21048001 None:intergenic 45.0%
! ACTTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048086-21048105 None:intergenic 45.0%
TCAGGTACTTTAGGTAGCTC+GGG - chr3_2:21048092-21048111 None:intergenic 45.0%
TCAGGTACCTTAGGGATATC+TGG - chr3_2:21048158-21048177 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
TTCAGGTACCTTAGGTAGCT+CGG - chr3_2:21048192-21048211 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
TTCAGGTACCTTAGGTAGCT+CGG - chr3_2:21048192-21048211 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
!! ACTTTTGGTAGCTCGGGTTT+TGG - chr3_2:21048251-21048270 None:intergenic 45.0%
!! TCAGAGACTTTTGGTAGCTC+GGG - chr3_2:21048257-21048276 None:intergenic 45.0%
!! CTCAGAGACTTTTGGTAGCT+CGG - chr3_2:21048258-21048277 None:intergenic 45.0%
! TTGGGCAACTCAGAGACTTT+TGG - chr3_2:21048266-21048285 None:intergenic 45.0%
! TCTAGAGTCGAACATACCTG+AGG + chr3_2:21047722-21047741 Msa0398920:CDS 45.0%
ATCTTAGGAAGCTCAGGCTT+TGG - chr3_2:21047774-21047793 None:intergenic 45.0%
TCAGGAATCTTAGGAAGCTC+AGG - chr3_2:21047780-21047799 None:intergenic 45.0%
ACCTAAGCCAGAATTGCCTA+AGG + chr3_2:21047803-21047822 Msa0398920:CDS 45.0%
!! ACCTTAGGCAATTCTGGCTT+AGG - chr3_2:21047807-21047826 None:intergenic 45.0%
TCAGGTACCTTAGGCAATTC+TGG - chr3_2:21047813-21047832 None:intergenic 45.0%
GCCAAAGCCAGAATTACCTA+AGG + chr3_2:21047836-21047855 Msa0398920:CDS 45.0%
!! AGCTTAGGCTTTGGAAGTTC+AGG - chr3_2:21047864-21047883 None:intergenic 45.0%
!! AACTCGGGTTTTGGCAATTC+AGG - chr3_2:21047903-21047922 None:intergenic 45.0%
!! ACTTTGGGAAACTCGGGTTT+TGG - chr3_2:21047912-21047931 None:intergenic 45.0%
! TCAGGAACTTTGGGAAACTC+GGG - chr3_2:21047918-21047937 None:intergenic 45.0%
! CTCAGGAACTTTGGGAAACT+CGG - chr3_2:21047919-21047938 None:intergenic 45.0%
TTAGGCAACTCGGGAACTTT+AGG - chr3_2:21047945-21047964 None:intergenic 45.0%
TTCAGGGAACTTAGGCAACT+CGG - chr3_2:21047955-21047974 None:intergenic 45.0%
TTGGGCAATTCAGGGAACTT+AGG - chr3_2:21047963-21047982 None:intergenic 45.0%
GACTTTAGGTAGCTCAGGTT+TGG - chr3_2:21047982-21048001 None:intergenic 45.0%
! ACTTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048086-21048105 None:intergenic 45.0%
TCAGGTACTTTAGGTAGCTC+GGG - chr3_2:21048092-21048111 None:intergenic 45.0%
TCAGGTACCTTAGGGATATC+TGG - chr3_2:21048158-21048177 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
TTCAGGTACCTTAGGTAGCT+CGG - chr3_2:21048192-21048211 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
TTCAGGTACCTTAGGTAGCT+CGG - chr3_2:21048192-21048211 None:intergenic 45.0%
!! AGCTCGGGTTTTGGTAATTC+AGG - chr3_2:21048176-21048195 None:intergenic 45.0%
!! ACTTTTGGTAGCTCGGGTTT+TGG - chr3_2:21048251-21048270 None:intergenic 45.0%
!! TCAGAGACTTTTGGTAGCTC+GGG - chr3_2:21048257-21048276 None:intergenic 45.0%
!! CTCAGAGACTTTTGGTAGCT+CGG - chr3_2:21048258-21048277 None:intergenic 45.0%
! TTGGGCAACTCAGAGACTTT+TGG - chr3_2:21048266-21048285 None:intergenic 45.0%
! AGCTCAGGCTTTGGTATAGG+TGG - chr3_2:21047765-21047784 None:intergenic 50.0%
! GGAAGCTCAGGCTTTGGTAT+AGG - chr3_2:21047768-21047787 None:intergenic 50.0%
TCGGGAACTTTAGGCAACTC+AGG - chr3_2:21047936-21047955 None:intergenic 50.0%
TCAGGGAACTTAGGCAACTC+GGG - chr3_2:21047954-21047973 None:intergenic 50.0%
GCTCAGGTTTGGGCAATTCA+GGG - chr3_2:21047971-21047990 None:intergenic 50.0%
AGCTCAGGTTTGGGCAATTC+AGG - chr3_2:21047972-21047991 None:intergenic 50.0%
!! CTCGGGTTTTGGCAATTCAG+GGG - chr3_2:21047901-21047920 None:intergenic 50.0%
!! GCTCGGGTTTTGGCAATTCA+GGG - chr3_2:21048076-21048095 None:intergenic 50.0%
!! AGCTCGGGTTTTGGCAATTC+AGG - chr3_2:21048077-21048096 None:intergenic 50.0%
TTGGGCAACTCAGAGACCAT+AGG - chr3_2:21048134-21048153 None:intergenic 50.0%
GCCCAAACCAGATATCCCTA+AGG + chr3_2:21048148-21048167 Msa0398920:CDS 50.0%
ACCAAAACCCGAGCTACCTA+AGG + chr3_2:21048181-21048200 Msa0398920:CDS 50.0%
! ACCTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048185-21048204 None:intergenic 50.0%
TCAGGTACCTTAGGTAGCTC+GGG - chr3_2:21048191-21048210 None:intergenic 50.0%
ACCAAAACCCGAGCTACCTA+AGG + chr3_2:21048181-21048200 Msa0398920:CDS 50.0%
! ACCTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048185-21048204 None:intergenic 50.0%
TCAGGTACCTTAGGTAGCTC+GGG - chr3_2:21048191-21048210 None:intergenic 50.0%
GCCCAAGCCAGAAATACCAA+AGG + chr3_2:21048280-21048299 Msa0398920:CDS 50.0%
!! ACTCGGGTTTTGGCAGTTCA+GGG - chr3_2:21048379-21048398 None:intergenic 50.0%
!! AACTCGGGTTTTGGCAGTTC+AGG - chr3_2:21048380-21048399 None:intergenic 50.0%
! AGCTCAGGCTTTGGTATAGG+TGG - chr3_2:21047765-21047784 None:intergenic 50.0%
! GGAAGCTCAGGCTTTGGTAT+AGG - chr3_2:21047768-21047787 None:intergenic 50.0%
TCGGGAACTTTAGGCAACTC+AGG - chr3_2:21047936-21047955 None:intergenic 50.0%
TCAGGGAACTTAGGCAACTC+GGG - chr3_2:21047954-21047973 None:intergenic 50.0%
GCTCAGGTTTGGGCAATTCA+GGG - chr3_2:21047971-21047990 None:intergenic 50.0%
AGCTCAGGTTTGGGCAATTC+AGG - chr3_2:21047972-21047991 None:intergenic 50.0%
!! CTCGGGTTTTGGCAATTCAG+GGG - chr3_2:21047901-21047920 None:intergenic 50.0%
!! GCTCGGGTTTTGGCAATTCA+GGG - chr3_2:21048076-21048095 None:intergenic 50.0%
!! AGCTCGGGTTTTGGCAATTC+AGG - chr3_2:21048077-21048096 None:intergenic 50.0%
TTGGGCAACTCAGAGACCAT+AGG - chr3_2:21048134-21048153 None:intergenic 50.0%
GCCCAAACCAGATATCCCTA+AGG + chr3_2:21048148-21048167 Msa0398920:CDS 50.0%
ACCAAAACCCGAGCTACCTA+AGG + chr3_2:21048181-21048200 Msa0398920:CDS 50.0%
! ACCTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048185-21048204 None:intergenic 50.0%
TCAGGTACCTTAGGTAGCTC+GGG - chr3_2:21048191-21048210 None:intergenic 50.0%
ACCAAAACCCGAGCTACCTA+AGG + chr3_2:21048181-21048200 Msa0398920:CDS 50.0%
! ACCTTAGGTAGCTCGGGTTT+TGG - chr3_2:21048185-21048204 None:intergenic 50.0%
TCAGGTACCTTAGGTAGCTC+GGG - chr3_2:21048191-21048210 None:intergenic 50.0%
GCCCAAGCCAGAAATACCAA+AGG + chr3_2:21048280-21048299 Msa0398920:CDS 50.0%
!! ACTCGGGTTTTGGCAGTTCA+GGG - chr3_2:21048379-21048398 None:intergenic 50.0%
!! AACTCGGGTTTTGGCAGTTC+AGG - chr3_2:21048380-21048399 None:intergenic 50.0%
TCGGGGACTTTAGGTAGCTC+AGG - chr3_2:21047987-21048006 None:intergenic 55.0%
TCGGGGACTTTAGGTAGCTC+AGG - chr3_2:21047987-21048006 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 21047624 21048448 21047624 ID=Msa0398920;Name=Msa0398920
chr3_2 mRNA 21047624 21048448 21047624 ID=Msa0398920-mRNA-1;Parent=Msa0398920;Name=Msa0398920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|274
chr3_2 exon 21047624 21048448 21047624 ID=Msa0398920-mRNA-1:exon:4596;Parent=Msa0398920-mRNA-1
chr3_2 CDS 21047624 21048448 21047624 ID=Msa0398920-mRNA-1:cds;Parent=Msa0398920-mRNA-1
Gene Sequence

>Msa0398920

ATGGCTTACATCAATTTCTCAAAAATTATTTTTCCATTAATCATTCTAGCTATACTGTCAGCCAAGAGTATTACAATGGTTGTCGGGGCACGCAATCTTCTAGAGTCGAACATACCTGAGGTTCCAAAACTTGATTTTCCACCTATACCAAAGCCTGAGCTTCCTAAGATTCCTGAATTACCTAAGCCAGAATTGCCTAAGGTACCTGAATTGCCAAAGCCAGAATTACCTAAGGTACCTGAACTTCCAAAGCCTAAGCTACCTAAGTTTAATGTTCCTGAATTGCCAAAACCCGAGTTTCCCAAAGTTCCTGAGTTGCCTAAAGTTCCCGAGTTGCCTAAGTTCCCTGAATTGCCCAAACCTGAGCTACCTAAAGTCCCCGAATTGTCTATGCCAGAAATTTCAAAGATACCTGAATTGCCAAAACCTGAGTTACCTAAATTTATTGCCCCTGAATTGCCAAAACCCGAGCTACCTAAAGTACCTGAATTGCCAAAACATGAACTACCTATGGTCTCTGAGTTGCCCAAACCAGATATCCCTAAGGTACCTGAATTACCAAAACCCGAGCTACCTAAGGTACCTGAATTACCAAAACCCGAGCTACCTAAGGTACCTGAATTACCAAAACCCGAGCTACCAAAAGTCTCTGAGTTGCCCAAGCCAGAAATACCAAAGGTACCTGAATTACCAAAGCTAGAGTTACCTAAGATACCTGAATTGACAAAGCCTGAACTACCTAAAGTTAATGTCCCTGAACTGCCAAAACCCGAGTTACCTAAATTCCCTGAAACTCCTAAAGATGTTCCAACCAATACTCCTTAA
Protein sequence

>Msa0398920

MAYINFSKIIFPLIILAILSAKSITMVVGARNLLESNIPEVPKLDFPPIPKPELPKIPELPKPELPKVPELPKPELPKVPELPKPKLPKFNVPELPKPEFPKVPELPKVPELPKFPELPKPELPKVPELSMPEISKIPELPKPELPKFIAPELPKPELPKVPELPKHELPMVSELPKPDIPKVPELPKPELPKVPELPKPELPKVPELPKPELPKVSELPKPEIPKVPELPKLELPKIPELTKPELPKVNVPELPKPELPKFPETPKDVPTNTP*