AlfalfaGEDB | Msa0457650

M. sativa cultivar zhongmu-4 / Msa0457650

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457650	XP_013459118.1	83.270	263	22	2	1	252	1	252	3.69e-115	340

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457650	sp\|Q9LXB8\|PLPK1_ARATH	53.901	282	66	7	26	246	30	308	6.57e-54	181
Msa0457650	sp\|Q9LXB8\|PLPK1_ARATH	60.163	246	58	8	35	245	100	340	9.58e-51	172
Msa0457650	sp\|Q9LXB8\|PLPK1_ARATH	60.440	91	28	2	35	119	282	370	3.92e-14	74.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457650	I3S1U4	83.270	263	22	2	1	252	1	252	1.76e-115	340

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0087080	Msa0457650	0.812014	5.246152e-51	-8.615850e-47
Msa0088080	Msa0457650	0.820629	6.199025e-53	-8.615850e-47
Msa0398920	Msa0457650	0.853813	1.864732e-61	-8.615850e-47
Msa0446170	Msa0457650	0.888236	7.061572e-73	-8.615850e-47
Msa0457650	Msa0457680	0.841757	3.915547e-58	-8.615850e-47
Msa0457650	Msa0493500	0.801921	7.166953e-49	-8.615850e-47
Msa0457650	Msa0560060	0.860476	2.010957e-63	-8.615850e-47
Msa0457650	Msa0737690	0.804874	1.751932e-49	-8.615850e-47
Msa0457650	Msa0810330	0.815796	7.693821e-52	-8.615850e-47
Msa0457650	Msa0850640	0.802008	6.879255e-49	-8.615850e-47
Msa0457650	Msa1378730	0.841983	3.412777e-58	-8.615850e-47
Msa0351870	Msa0457650	0.872124	4.047205e-67	-8.615850e-47
Msa0351890	Msa0457650	0.892548	1.434531e-74	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457650	MtrunA17_Chr3g0087151	83.270	263	22	2	1	252	1	252	3.39e-119	340
Msa0457650	MtrunA17_Chr3g0087231	61.017	295	63	5	1	245	1	293	8.94e-84	253
Msa0457650	MtrunA17_Chr3g0087231	57.576	198	38	3	40	199	148	337	3.70e-39	139
Msa0457650	MtrunA17_Chr3g0087231	70.833	96	22	3	36	128	242	334	1.87e-19	85.9
Msa0457650	MtrunA17_Chr3g0087211	59.136	301	66	5	1	246	1	299	9.24e-81	246
Msa0457650	MtrunA17_Chr3g0087041	86.034	179	21	2	1	177	1	177	9.37e-81	240
Msa0457650	MtrunA17_Chr3g0087041	69.939	163	33	3	91	252	37	184	3.25e-46	152
Msa0457650	MtrunA17_Chr3g0087041	62.500	80	24	1	166	245	35	108	2.71e-14	69.3
Msa0457650	MtrunA17_Chr3g0087161	53.271	107	45	2	1	107	1	102	2.06e-25	97.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457650	AT5G09530.1	53.901	282	66	7	26	246	30	308	6.68e-55	181
Msa0457650	AT5G09530.1	60.163	246	58	8	35	245	100	340	9.74e-52	172
Msa0457650	AT5G09530.1	60.440	91	28	2	35	119	282	370	3.99e-15	74.3
Msa0457650	AT5G09520.1	45.695	151	47	4	8	155	10	128	6.69e-24	93.6
Msa0457650	AT5G09520.1	53.211	109	39	3	136	244	34	130	2.95e-17	76.3
Msa0457650	AT5G09520.1	56.701	97	35	3	110	206	41	130	2.98e-15	70.9
Msa0457650	AT5G09520.1	52.326	86	37	1	171	252	34	119	2.21e-13	65.9
Msa0457650	AT5G09520.1	53.684	95	32	3	104	193	41	128	9.44e-13	63.9

Find 86 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAGGCATCTTTGGAATTTC+TGG	0.076688	3_3:+52688417	None:intergenic
TCAGGTACCTTTGGTATTTC+TGG	0.077856	3_3:+52688213	None:intergenic
AGCTCAGGTTTGGGCAATTC+AGG	0.197717	3_3:+52688465	None:intergenic
GGAACATCTTTAGGAGTTTC+AGG	0.202854	3_3:+52688090	None:intergenic
TCAGGTACCTTAGGCAATTC+TGG	0.231204	3_3:+52688624	None:intergenic
TCAGGTACCTTAGGTAATTC+TGG	0.242157	3_3:+52688591	None:intergenic
TTAGGAGTTTCAGGGAATTT+AGG	0.242346	3_3:+52688099	None:intergenic
AACTCTAGCTTTGGTAATTC+AGG	0.247874	3_3:+52688195	None:intergenic
AACTCAGGCTTTGGCAATTC+AGG	0.251117	3_3:+52688399	None:intergenic
AATTCAGGGGCAATAAATTT+AGG	0.255231	3_3:+52688375	None:intergenic
AATTCTGGCTTTGGCAATTC+AGG	0.265103	3_3:+52688606	None:intergenic
GACTTTAGGTAGCTCAGGTT+TGG	0.265600	3_3:+52688455	None:intergenic
AGTTGAGGCTTTGTCAATTC+AGG	0.281138	3_3:+52688162	None:intergenic
TCAGGTACCTTAGGGATATC+TGG	0.288152	3_3:+52688279	None:intergenic
TTTGGCAATTCAGGCATCTT+TGG	0.301619	3_3:+52688408	None:intergenic
TTAGGTAATTCAGGAATCTT+AGG	0.302765	3_3:+52688648	None:intergenic
ATAGACAATTCGGGGACTTT+AGG	0.311738	3_3:+52688441	None:intergenic
ACTTTAAGTTGCTCGGGTTT+TGG	0.318630	3_3:+52688351	None:intergenic
TACCTTTGGTATTTCTGGCT+TGG	0.319635	3_3:+52688218	None:intergenic
AGCTCAGGCTTTGGAAGTTC+AGG	0.319717	3_3:+52688573	None:intergenic
AATTTAGGTAACTCGGGTTT+TGG	0.322053	3_3:+52688114	None:intergenic
ACCTTTGGTATTTCTGGCTT+GGG	0.325986	3_3:+52688219	None:intergenic
ACCTTAGGTAGTTCATGTTT+TGG	0.327549	3_3:+52688318	None:intergenic
GTATTGGTTGGAACATCTTT+AGG	0.328990	3_3:+52688081	None:intergenic
TTAGGCAACTCGGGAACTTT+AGG	0.329308	3_3:+52688492	None:intergenic
TACCTTAGGGATATCTGGTT+TGG	0.332667	3_3:+52688284	None:intergenic
TTTGGTAATTCAGGTACCTT+AGG	0.339853	3_3:+52688270	None:intergenic
AGTATAGCTAGAATCATTAA+TGG	0.349622	3_3:+52688777	None:intergenic
ATAGGTGGAAAATCAAGTTT+TGG	0.353325	3_3:+52688687	None:intergenic
ACTTTGGGAAACTCGGGTTT+TGG	0.357337	3_3:+52688525	None:intergenic
TTAGGCAACTCAGGAACTTT+GGG	0.358876	3_3:+52688510	None:intergenic
ACTTTAGGTAGCTCAGGTTT+GGG	0.365399	3_3:+52688456	None:intergenic
AATTTCTGGCATAGACAATT+CGG	0.365865	3_3:+52688431	None:intergenic
ACCTTAGGTAATTCTGGCTT+TGG	0.366886	3_3:+52688597	None:intergenic
TTGGGCAACTCAGAGACTTT+TGG	0.369313	3_3:+52688237	None:intergenic
GGAAGCTCAGGCTTTGGTAT+AGG	0.376080	3_3:+52688669	None:intergenic
AATTCTGGCTTAGGTAATTC+AGG	0.380278	3_3:+52688639	None:intergenic
AGTTCAGGGACATTAACTTT+AGG	0.387475	3_3:+52688138	None:intergenic
AATTTAGGTAACTCAGGCTT+TGG	0.388803	3_3:+52688390	None:intergenic
CTCAGGAACTTTGGGAAACT+CGG	0.389158	3_3:+52688518	None:intergenic
TTTAGGCAACTCAGGAACTT+TGG	0.393082	3_3:+52688509	None:intergenic
ATCTTAGGAAGCTCAGGCTT+TGG	0.394512	3_3:+52688663	None:intergenic
ATTTCTGGCATAGACAATTC+GGG	0.397522	3_3:+52688432	None:intergenic
TTTGGTAATTCAGGTACCTT+TGG	0.399783	3_3:+52688204	None:intergenic
AACTTAGGTAGCTCAGGCTT+TGG	0.406351	3_3:+52688564	None:intergenic
TTCAGGTACTTTAAGTTGCT+CGG	0.407254	3_3:+52688344	None:intergenic
TTTGGAAGTTCAGGTACCTT+AGG	0.422522	3_3:+52688582	None:intergenic
ACCTTAGGGATATCTGGTTT+GGG	0.423518	3_3:+52688285	None:intergenic
AGTTCCAACTTAAGGAGTAT+TGG	0.438613	3_3:+52688065	None:intergenic
AGAGTATTACAATGGTTGTC+GGG	0.440611	3_3:-52688746	Msa0457650:CDS
TTTGGCAATTCAGGTACCTT+AGG	0.442441	3_3:+52688615	None:intergenic
TCAGGAATCTTAGGAAGCTC+AGG	0.453881	3_3:+52688657	None:intergenic
ATCTGAGGTAACTCTAGCTT+TGG	0.462724	3_3:+52688186	None:intergenic
ACCTTAGGCAATTCTGGCTT+AGG	0.463421	3_3:+52688630	None:intergenic
ACATTAAACTTAGGTAGCTC+AGG	0.466667	3_3:+52688558	None:intergenic
TCGGGGACTTTAGGTAGCTC+AGG	0.467048	3_3:+52688450	None:intergenic
TTGGGCAATTCAGGGAACTT+AGG	0.475381	3_3:+52688474	None:intergenic
TTCAGGGAATTTAGGTAACT+CGG	0.478958	3_3:+52688107	None:intergenic
TTGGGCAACTCAGAGACCTT+AGG	0.486272	3_3:+52688303	None:intergenic
GACAACCATTGTAATACTCT+TGG	0.489157	3_3:+52688749	None:intergenic
AATTCAGGAACATTAAACTT+AGG	0.490699	3_3:+52688549	None:intergenic
TTGGTAATTCAGGTACCTTA+GGG	0.494321	3_3:+52688271	None:intergenic
GAACATCTTTAGGAGTTTCA+GGG	0.495266	3_3:+52688091	None:intergenic
TCAGGTACTTTAAGTTGCTC+GGG	0.495702	3_3:+52688345	None:intergenic
TTCAGGGAACTTAGGCAACT+CGG	0.499436	3_3:+52688482	None:intergenic
AACCATTGTAATACTCTTGG+CGG	0.510875	3_3:+52688752	None:intergenic
GCAATAAATTTAGGTAACTC+AGG	0.518136	3_3:+52688384	None:intergenic
GCTCAGGTTTGGGCAATTCA+GGG	0.523757	3_3:+52688466	None:intergenic
CCAACTTAAGGAGTATTGGT+TGG	0.525013	3_3:+52688069	None:intergenic
AAGAGTATTACAATGGTTGT+CGG	0.526376	3_3:-52688747	Msa0457650:CDS
GCCAAAACATGAACTACCTA+AGG	0.527245	3_3:-52688319	Msa0457650:CDS
TCAGGAACTTTGGGAAACTC+GGG	0.528389	3_3:+52688519	None:intergenic
AGCTCAGGCTTTGGTATAGG+TGG	0.530445	3_3:+52688672	None:intergenic
TCAGGGAATTTAGGTAACTC+GGG	0.549724	3_3:+52688108	None:intergenic
ACATTAACTTTAGGTAGTTG+AGG	0.564253	3_3:+52688147	None:intergenic
TCGGGAACTTTAGGCAACTC+AGG	0.569614	3_3:+52688501	None:intergenic
TCAGGGAACTTAGGCAACTC+GGG	0.582113	3_3:+52688483	None:intergenic
GCCAAAGCCAGAATTACCTA+AGG	0.599842	3_3:-52688598	Msa0457650:CDS
ACCTAAGCCAGAATTGCCTA+AGG	0.603337	3_3:-52688631	Msa0457650:CDS
TTTGTCAATTCAGGTATCTG+AGG	0.606516	3_3:+52688171	None:intergenic
TTTCTGGCATAGACAATTCG+GGG	0.611978	3_3:+52688433	None:intergenic
GAGTATTACAATGGTTGTCG+GGG	0.633099	3_3:-52688745	Msa0457650:CDS
GCCCAAACCAGATATCCCTA+AGG	0.649847	3_3:-52688286	Msa0457650:CDS
ATCCGCCAAGAGTATTACAA+TGG	0.672419	3_3:-52688754	Msa0457650:CDS
GCCCAAGCCAGAAATACCAA+AGG	0.675655	3_3:-52688220	Msa0457650:CDS
TCTAGAGTCGAACATACCTG+AGG	0.701502	3_3:-52688712	Msa0457650:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAATGGAAAAATAATTTT+TGG	+	chr3_3:52688095-52688114	None:intergenic	10.0%
!!!	ATTAATGGAAAAATAATTTT+TGG	+	chr3_3:52688095-52688114	None:intergenic	10.0%
!	AGTATAGCTAGAATCATTAA+TGG	+	chr3_3:52688110-52688129	None:intergenic	25.0%
!	AATTCAGGAACATTAAACTT+AGG	+	chr3_3:52688338-52688357	None:intergenic	25.0%
!	AGTATAGCTAGAATCATTAA+TGG	+	chr3_3:52688110-52688129	None:intergenic	25.0%
!	AATTCAGGAACATTAAACTT+AGG	+	chr3_3:52688338-52688357	None:intergenic	25.0%
!!	AAGAGTATTACAATGGTTGT+CGG	-	chr3_3:52688137-52688156	Msa0457650:CDS	30.0%
!	ATAGGTGGAAAATCAAGTTT+TGG	+	chr3_3:52688200-52688219	None:intergenic	30.0%
	TTAGGTAATTCAGGAATCTT+AGG	+	chr3_3:52688239-52688258	None:intergenic	30.0%
!!	AATTTCTGGCATAGACAATT+CGG	+	chr3_3:52688456-52688475	None:intergenic	30.0%
	GCAATAAATTTAGGTAACTC+AGG	+	chr3_3:52688503-52688522	None:intergenic	30.0%
	AATTCAGGGGCAATAAATTT+AGG	+	chr3_3:52688512-52688531	None:intergenic	30.0%
	ACATTAACTTTAGGTAGTTG+AGG	+	chr3_3:52688740-52688759	None:intergenic	30.0%
!!	AAGAGTATTACAATGGTTGT+CGG	-	chr3_3:52688137-52688156	Msa0457650:CDS	30.0%
!	ATAGGTGGAAAATCAAGTTT+TGG	+	chr3_3:52688200-52688219	None:intergenic	30.0%
	TTAGGTAATTCAGGAATCTT+AGG	+	chr3_3:52688239-52688258	None:intergenic	30.0%
!!	AATTTCTGGCATAGACAATT+CGG	+	chr3_3:52688456-52688475	None:intergenic	30.0%
	GCAATAAATTTAGGTAACTC+AGG	+	chr3_3:52688503-52688522	None:intergenic	30.0%
	AATTCAGGGGCAATAAATTT+AGG	+	chr3_3:52688512-52688531	None:intergenic	30.0%
	ACATTAACTTTAGGTAGTTG+AGG	+	chr3_3:52688740-52688759	None:intergenic	30.0%
	AACCATTGTAATACTCTTGG+CGG	+	chr3_3:52688135-52688154	None:intergenic	35.0%
	GACAACCATTGTAATACTCT+TGG	+	chr3_3:52688138-52688157	None:intergenic	35.0%
!	AGAGTATTACAATGGTTGTC+GGG	-	chr3_3:52688138-52688157	Msa0457650:CDS	35.0%
!!!	AAATCAAGTTTTGGAACCTC+AGG	+	chr3_3:52688191-52688210	None:intergenic	35.0%
!!	AATTCTGGCTTAGGTAATTC+AGG	+	chr3_3:52688248-52688267	None:intergenic	35.0%
	ACATTAAACTTAGGTAGCTC+AGG	+	chr3_3:52688329-52688348	None:intergenic	35.0%
!!	ATTTCTGGCATAGACAATTC+GGG	+	chr3_3:52688455-52688474	None:intergenic	35.0%
	AATTTAGGTAACTCAGGCTT+TGG	+	chr3_3:52688497-52688516	None:intergenic	35.0%
!!	TTCAGGTACTTTAAGTTGCT+CGG	+	chr3_3:52688543-52688562	None:intergenic	35.0%
!!!	AGTTCATGTTTTGGCAATTC+AGG	+	chr3_3:52688560-52688579	None:intergenic	35.0%
!	ACCTTAGGTAGTTCATGTTT+TGG	+	chr3_3:52688569-52688588	None:intergenic	35.0%
!	TTGGTAATTCAGGTACCTTA+GGG	+	chr3_3:52688616-52688635	None:intergenic	35.0%
!	TTTGGTAATTCAGGTACCTT+AGG	+	chr3_3:52688617-52688636	None:intergenic	35.0%
!	TTTGGTAATTCAGGTACCTT+TGG	+	chr3_3:52688617-52688636	None:intergenic	35.0%
!!	AACTCTAGCTTTGGTAATTC+AGG	+	chr3_3:52688692-52688711	None:intergenic	35.0%
	TTTGTCAATTCAGGTATCTG+AGG	+	chr3_3:52688716-52688735	None:intergenic	35.0%
	AGTTCAGGGACATTAACTTT+AGG	+	chr3_3:52688749-52688768	None:intergenic	35.0%
!	AATTTAGGTAACTCGGGTTT+TGG	+	chr3_3:52688773-52688792	None:intergenic	35.0%
	TTCAGGGAATTTAGGTAACT+CGG	+	chr3_3:52688780-52688799	None:intergenic	35.0%
	TTAGGAGTTTCAGGGAATTT+AGG	+	chr3_3:52688788-52688807	None:intergenic	35.0%
!	GAACATCTTTAGGAGTTTCA+GGG	+	chr3_3:52688796-52688815	None:intergenic	35.0%
!!	GTATTGGTTGGAACATCTTT+AGG	+	chr3_3:52688806-52688825	None:intergenic	35.0%
	AACCATTGTAATACTCTTGG+CGG	+	chr3_3:52688135-52688154	None:intergenic	35.0%
	GACAACCATTGTAATACTCT+TGG	+	chr3_3:52688138-52688157	None:intergenic	35.0%
!	AGAGTATTACAATGGTTGTC+GGG	-	chr3_3:52688138-52688157	Msa0457650:CDS	35.0%
!!!	AAATCAAGTTTTGGAACCTC+AGG	+	chr3_3:52688191-52688210	None:intergenic	35.0%
!!	AATTCTGGCTTAGGTAATTC+AGG	+	chr3_3:52688248-52688267	None:intergenic	35.0%
	ACATTAAACTTAGGTAGCTC+AGG	+	chr3_3:52688329-52688348	None:intergenic	35.0%
!!	ATTTCTGGCATAGACAATTC+GGG	+	chr3_3:52688455-52688474	None:intergenic	35.0%
	AATTTAGGTAACTCAGGCTT+TGG	+	chr3_3:52688497-52688516	None:intergenic	35.0%
!!	TTCAGGTACTTTAAGTTGCT+CGG	+	chr3_3:52688543-52688562	None:intergenic	35.0%
!!!	AGTTCATGTTTTGGCAATTC+AGG	+	chr3_3:52688560-52688579	None:intergenic	35.0%
!	ACCTTAGGTAGTTCATGTTT+TGG	+	chr3_3:52688569-52688588	None:intergenic	35.0%
!	TTGGTAATTCAGGTACCTTA+GGG	+	chr3_3:52688616-52688635	None:intergenic	35.0%
!	TTTGGTAATTCAGGTACCTT+AGG	+	chr3_3:52688617-52688636	None:intergenic	35.0%
!	TTTGGTAATTCAGGTACCTT+TGG	+	chr3_3:52688617-52688636	None:intergenic	35.0%
!!	AACTCTAGCTTTGGTAATTC+AGG	+	chr3_3:52688692-52688711	None:intergenic	35.0%
	TTTGTCAATTCAGGTATCTG+AGG	+	chr3_3:52688716-52688735	None:intergenic	35.0%
	AGTTCAGGGACATTAACTTT+AGG	+	chr3_3:52688749-52688768	None:intergenic	35.0%
!	AATTTAGGTAACTCGGGTTT+TGG	+	chr3_3:52688773-52688792	None:intergenic	35.0%
	TTCAGGGAATTTAGGTAACT+CGG	+	chr3_3:52688780-52688799	None:intergenic	35.0%
	TTAGGAGTTTCAGGGAATTT+AGG	+	chr3_3:52688788-52688807	None:intergenic	35.0%
!	GAACATCTTTAGGAGTTTCA+GGG	+	chr3_3:52688796-52688815	None:intergenic	35.0%
!!	GTATTGGTTGGAACATCTTT+AGG	+	chr3_3:52688806-52688825	None:intergenic	35.0%
!!	ATCCGCCAAGAGTATTACAA+TGG	-	chr3_3:52688130-52688149	Msa0457650:CDS	40.0%
	GAGTATTACAATGGTTGTCG+GGG	-	chr3_3:52688139-52688158	Msa0457650:CDS	40.0%
	TTTGGCAATTCAGGTACCTT+AGG	+	chr3_3:52688272-52688291	None:intergenic	40.0%
!!	AATTCTGGCTTTGGCAATTC+AGG	+	chr3_3:52688281-52688300	None:intergenic	40.0%
!!	ACCTTAGGTAATTCTGGCTT+TGG	+	chr3_3:52688290-52688309	None:intergenic	40.0%
	TCAGGTACCTTAGGTAATTC+TGG	+	chr3_3:52688296-52688315	None:intergenic	40.0%
	TTTGGAAGTTCAGGTACCTT+AGG	+	chr3_3:52688305-52688324	None:intergenic	40.0%
	TTAGGCAACTCAGGAACTTT+GGG	+	chr3_3:52688377-52688396	None:intergenic	40.0%
	TTTAGGCAACTCAGGAACTT+TGG	+	chr3_3:52688378-52688397	None:intergenic	40.0%
	ACTTTAGGTAGCTCAGGTTT+GGG	+	chr3_3:52688431-52688450	None:intergenic	40.0%
	ATAGACAATTCGGGGACTTT+AGG	+	chr3_3:52688446-52688465	None:intergenic	40.0%
!	TTTCTGGCATAGACAATTCG+GGG	+	chr3_3:52688454-52688473	None:intergenic	40.0%
!!	TCAGGCATCTTTGGAATTTC+TGG	+	chr3_3:52688470-52688489	None:intergenic	40.0%
	TTTGGCAATTCAGGCATCTT+TGG	+	chr3_3:52688479-52688498	None:intergenic	40.0%
!!!	ACTTTAAGTTGCTCGGGTTT+TGG	+	chr3_3:52688536-52688555	None:intergenic	40.0%
!!	TCAGGTACTTTAAGTTGCTC+GGG	+	chr3_3:52688542-52688561	None:intergenic	40.0%
	GCCAAAACATGAACTACCTA+AGG	-	chr3_3:52688565-52688584	Msa0457650:CDS	40.0%
!	ACCTTAGGGATATCTGGTTT+GGG	+	chr3_3:52688602-52688621	None:intergenic	40.0%
	TACCTTAGGGATATCTGGTT+TGG	+	chr3_3:52688603-52688622	None:intergenic	40.0%
!!	ACCTTTGGTATTTCTGGCTT+GGG	+	chr3_3:52688668-52688687	None:intergenic	40.0%
!!	TACCTTTGGTATTTCTGGCT+TGG	+	chr3_3:52688669-52688688	None:intergenic	40.0%
	TCAGGTACCTTTGGTATTTC+TGG	+	chr3_3:52688674-52688693	None:intergenic	40.0%
!	ATCTGAGGTAACTCTAGCTT+TGG	+	chr3_3:52688701-52688720	None:intergenic	40.0%
!	AGTTGAGGCTTTGTCAATTC+AGG	+	chr3_3:52688725-52688744	None:intergenic	40.0%
	TCAGGGAATTTAGGTAACTC+GGG	+	chr3_3:52688779-52688798	None:intergenic	40.0%
!	GGAACATCTTTAGGAGTTTC+AGG	+	chr3_3:52688797-52688816	None:intergenic	40.0%
!!	ATCCGCCAAGAGTATTACAA+TGG	-	chr3_3:52688130-52688149	Msa0457650:CDS	40.0%
	GAGTATTACAATGGTTGTCG+GGG	-	chr3_3:52688139-52688158	Msa0457650:CDS	40.0%
	TTTGGCAATTCAGGTACCTT+AGG	+	chr3_3:52688272-52688291	None:intergenic	40.0%
!!	AATTCTGGCTTTGGCAATTC+AGG	+	chr3_3:52688281-52688300	None:intergenic	40.0%
!!	ACCTTAGGTAATTCTGGCTT+TGG	+	chr3_3:52688290-52688309	None:intergenic	40.0%
	TCAGGTACCTTAGGTAATTC+TGG	+	chr3_3:52688296-52688315	None:intergenic	40.0%
	TTTGGAAGTTCAGGTACCTT+AGG	+	chr3_3:52688305-52688324	None:intergenic	40.0%
	TTAGGCAACTCAGGAACTTT+GGG	+	chr3_3:52688377-52688396	None:intergenic	40.0%
	TTTAGGCAACTCAGGAACTT+TGG	+	chr3_3:52688378-52688397	None:intergenic	40.0%
	ACTTTAGGTAGCTCAGGTTT+GGG	+	chr3_3:52688431-52688450	None:intergenic	40.0%
	ATAGACAATTCGGGGACTTT+AGG	+	chr3_3:52688446-52688465	None:intergenic	40.0%
!	TTTCTGGCATAGACAATTCG+GGG	+	chr3_3:52688454-52688473	None:intergenic	40.0%
!!	TCAGGCATCTTTGGAATTTC+TGG	+	chr3_3:52688470-52688489	None:intergenic	40.0%
	TTTGGCAATTCAGGCATCTT+TGG	+	chr3_3:52688479-52688498	None:intergenic	40.0%
!!!	ACTTTAAGTTGCTCGGGTTT+TGG	+	chr3_3:52688536-52688555	None:intergenic	40.0%
!!	TCAGGTACTTTAAGTTGCTC+GGG	+	chr3_3:52688542-52688561	None:intergenic	40.0%
	GCCAAAACATGAACTACCTA+AGG	-	chr3_3:52688565-52688584	Msa0457650:CDS	40.0%
!	ACCTTAGGGATATCTGGTTT+GGG	+	chr3_3:52688602-52688621	None:intergenic	40.0%
	TACCTTAGGGATATCTGGTT+TGG	+	chr3_3:52688603-52688622	None:intergenic	40.0%
!!	ACCTTTGGTATTTCTGGCTT+GGG	+	chr3_3:52688668-52688687	None:intergenic	40.0%
!!	TACCTTTGGTATTTCTGGCT+TGG	+	chr3_3:52688669-52688688	None:intergenic	40.0%
	TCAGGTACCTTTGGTATTTC+TGG	+	chr3_3:52688674-52688693	None:intergenic	40.0%
!	ATCTGAGGTAACTCTAGCTT+TGG	+	chr3_3:52688701-52688720	None:intergenic	40.0%
!	AGTTGAGGCTTTGTCAATTC+AGG	+	chr3_3:52688725-52688744	None:intergenic	40.0%
	TCAGGGAATTTAGGTAACTC+GGG	+	chr3_3:52688779-52688798	None:intergenic	40.0%
!	GGAACATCTTTAGGAGTTTC+AGG	+	chr3_3:52688797-52688816	None:intergenic	40.0%
!	TCTAGAGTCGAACATACCTG+AGG	-	chr3_3:52688172-52688191	Msa0457650:CDS	45.0%
	ATCTTAGGAAGCTCAGGCTT+TGG	+	chr3_3:52688224-52688243	None:intergenic	45.0%
	TCAGGAATCTTAGGAAGCTC+AGG	+	chr3_3:52688230-52688249	None:intergenic	45.0%
	ACCTAAGCCAGAATTGCCTA+AGG	-	chr3_3:52688253-52688272	Msa0457650:CDS	45.0%
!!	ACCTTAGGCAATTCTGGCTT+AGG	+	chr3_3:52688257-52688276	None:intergenic	45.0%
	TCAGGTACCTTAGGCAATTC+TGG	+	chr3_3:52688263-52688282	None:intergenic	45.0%
	GCCAAAGCCAGAATTACCTA+AGG	-	chr3_3:52688286-52688305	Msa0457650:CDS	45.0%
	AACTTAGGTAGCTCAGGCTT+TGG	+	chr3_3:52688323-52688342	None:intergenic	45.0%
!!	AACTCGGGTTTTGGCAATTC+AGG	+	chr3_3:52688353-52688372	None:intergenic	45.0%
!!	ACTTTGGGAAACTCGGGTTT+TGG	+	chr3_3:52688362-52688381	None:intergenic	45.0%
!	TCAGGAACTTTGGGAAACTC+GGG	+	chr3_3:52688368-52688387	None:intergenic	45.0%
!	CTCAGGAACTTTGGGAAACT+CGG	+	chr3_3:52688369-52688388	None:intergenic	45.0%
	TTAGGCAACTCGGGAACTTT+AGG	+	chr3_3:52688395-52688414	None:intergenic	45.0%
	TTCAGGGAACTTAGGCAACT+CGG	+	chr3_3:52688405-52688424	None:intergenic	45.0%
	TTGGGCAATTCAGGGAACTT+AGG	+	chr3_3:52688413-52688432	None:intergenic	45.0%
	GACTTTAGGTAGCTCAGGTT+TGG	+	chr3_3:52688432-52688451	None:intergenic	45.0%
!	AACTCAGGCTTTGGCAATTC+AGG	+	chr3_3:52688488-52688507	None:intergenic	45.0%
!!	CTCGGGTTTTGGTAATTCAG+GGG	+	chr3_3:52688525-52688544	None:intergenic	45.0%
!!	GCTCGGGTTTTGGTAATTCA+GGG	+	chr3_3:52688526-52688545	None:intergenic	45.0%
!!	TGCTCGGGTTTTGGTAATTC+AGG	+	chr3_3:52688527-52688546	None:intergenic	45.0%
	TCAGGTACCTTAGGGATATC+TGG	+	chr3_3:52688608-52688627	None:intergenic	45.0%
!!	AGCTCGGGTTTTGGTAATTC+AGG	+	chr3_3:52688626-52688645	None:intergenic	45.0%
!!	ACTTTTGGTAGCTCGGGTTT+TGG	+	chr3_3:52688635-52688654	None:intergenic	45.0%
!!	TCAGAGACTTTTGGTAGCTC+GGG	+	chr3_3:52688641-52688660	None:intergenic	45.0%
!!	CTCAGAGACTTTTGGTAGCT+CGG	+	chr3_3:52688642-52688661	None:intergenic	45.0%
!	TTGGGCAACTCAGAGACTTT+TGG	+	chr3_3:52688650-52688669	None:intergenic	45.0%
!	TCTAGAGTCGAACATACCTG+AGG	-	chr3_3:52688172-52688191	Msa0457650:CDS	45.0%
	ATCTTAGGAAGCTCAGGCTT+TGG	+	chr3_3:52688224-52688243	None:intergenic	45.0%
	TCAGGAATCTTAGGAAGCTC+AGG	+	chr3_3:52688230-52688249	None:intergenic	45.0%
	ACCTAAGCCAGAATTGCCTA+AGG	-	chr3_3:52688253-52688272	Msa0457650:CDS	45.0%
!!	ACCTTAGGCAATTCTGGCTT+AGG	+	chr3_3:52688257-52688276	None:intergenic	45.0%
	TCAGGTACCTTAGGCAATTC+TGG	+	chr3_3:52688263-52688282	None:intergenic	45.0%
	GCCAAAGCCAGAATTACCTA+AGG	-	chr3_3:52688286-52688305	Msa0457650:CDS	45.0%
	AACTTAGGTAGCTCAGGCTT+TGG	+	chr3_3:52688323-52688342	None:intergenic	45.0%
!!	AACTCGGGTTTTGGCAATTC+AGG	+	chr3_3:52688353-52688372	None:intergenic	45.0%
!!	ACTTTGGGAAACTCGGGTTT+TGG	+	chr3_3:52688362-52688381	None:intergenic	45.0%
!	TCAGGAACTTTGGGAAACTC+GGG	+	chr3_3:52688368-52688387	None:intergenic	45.0%
!	CTCAGGAACTTTGGGAAACT+CGG	+	chr3_3:52688369-52688388	None:intergenic	45.0%
	TTAGGCAACTCGGGAACTTT+AGG	+	chr3_3:52688395-52688414	None:intergenic	45.0%
	TTCAGGGAACTTAGGCAACT+CGG	+	chr3_3:52688405-52688424	None:intergenic	45.0%
	TTGGGCAATTCAGGGAACTT+AGG	+	chr3_3:52688413-52688432	None:intergenic	45.0%
	GACTTTAGGTAGCTCAGGTT+TGG	+	chr3_3:52688432-52688451	None:intergenic	45.0%
!	AACTCAGGCTTTGGCAATTC+AGG	+	chr3_3:52688488-52688507	None:intergenic	45.0%
!!	CTCGGGTTTTGGTAATTCAG+GGG	+	chr3_3:52688525-52688544	None:intergenic	45.0%
!!	GCTCGGGTTTTGGTAATTCA+GGG	+	chr3_3:52688526-52688545	None:intergenic	45.0%
!!	TGCTCGGGTTTTGGTAATTC+AGG	+	chr3_3:52688527-52688546	None:intergenic	45.0%
	TCAGGTACCTTAGGGATATC+TGG	+	chr3_3:52688608-52688627	None:intergenic	45.0%
!!	AGCTCGGGTTTTGGTAATTC+AGG	+	chr3_3:52688626-52688645	None:intergenic	45.0%
!!	ACTTTTGGTAGCTCGGGTTT+TGG	+	chr3_3:52688635-52688654	None:intergenic	45.0%
!!	TCAGAGACTTTTGGTAGCTC+GGG	+	chr3_3:52688641-52688660	None:intergenic	45.0%
!!	CTCAGAGACTTTTGGTAGCT+CGG	+	chr3_3:52688642-52688661	None:intergenic	45.0%
!	TTGGGCAACTCAGAGACTTT+TGG	+	chr3_3:52688650-52688669	None:intergenic	45.0%
!	AGCTCAGGCTTTGGTATAGG+TGG	+	chr3_3:52688215-52688234	None:intergenic	50.0%
!	GGAAGCTCAGGCTTTGGTAT+AGG	+	chr3_3:52688218-52688237	None:intergenic	50.0%
!!	AGCTCAGGCTTTGGAAGTTC+AGG	+	chr3_3:52688314-52688333	None:intergenic	50.0%
	TCGGGAACTTTAGGCAACTC+AGG	+	chr3_3:52688386-52688405	None:intergenic	50.0%
	TCAGGGAACTTAGGCAACTC+GGG	+	chr3_3:52688404-52688423	None:intergenic	50.0%
	GCTCAGGTTTGGGCAATTCA+GGG	+	chr3_3:52688421-52688440	None:intergenic	50.0%
	AGCTCAGGTTTGGGCAATTC+AGG	+	chr3_3:52688422-52688441	None:intergenic	50.0%
	TTGGGCAACTCAGAGACCTT+AGG	+	chr3_3:52688584-52688603	None:intergenic	50.0%
	GCCCAAACCAGATATCCCTA+AGG	-	chr3_3:52688598-52688617	Msa0457650:CDS	50.0%
	GCCCAAGCCAGAAATACCAA+AGG	-	chr3_3:52688664-52688683	Msa0457650:CDS	50.0%
!!	ACTCGGGTTTTGGCAGTTCA+GGG	+	chr3_3:52688763-52688782	None:intergenic	50.0%
!!	AACTCGGGTTTTGGCAGTTC+AGG	+	chr3_3:52688764-52688783	None:intergenic	50.0%
!	AGCTCAGGCTTTGGTATAGG+TGG	+	chr3_3:52688215-52688234	None:intergenic	50.0%
!	GGAAGCTCAGGCTTTGGTAT+AGG	+	chr3_3:52688218-52688237	None:intergenic	50.0%
!!	AGCTCAGGCTTTGGAAGTTC+AGG	+	chr3_3:52688314-52688333	None:intergenic	50.0%
	TCGGGAACTTTAGGCAACTC+AGG	+	chr3_3:52688386-52688405	None:intergenic	50.0%
	TCAGGGAACTTAGGCAACTC+GGG	+	chr3_3:52688404-52688423	None:intergenic	50.0%
	GCTCAGGTTTGGGCAATTCA+GGG	+	chr3_3:52688421-52688440	None:intergenic	50.0%
	AGCTCAGGTTTGGGCAATTC+AGG	+	chr3_3:52688422-52688441	None:intergenic	50.0%
	TTGGGCAACTCAGAGACCTT+AGG	+	chr3_3:52688584-52688603	None:intergenic	50.0%
	GCCCAAACCAGATATCCCTA+AGG	-	chr3_3:52688598-52688617	Msa0457650:CDS	50.0%
	GCCCAAGCCAGAAATACCAA+AGG	-	chr3_3:52688664-52688683	Msa0457650:CDS	50.0%
!!	ACTCGGGTTTTGGCAGTTCA+GGG	+	chr3_3:52688763-52688782	None:intergenic	50.0%
!!	AACTCGGGTTTTGGCAGTTC+AGG	+	chr3_3:52688764-52688783	None:intergenic	50.0%
	TCGGGGACTTTAGGTAGCTC+AGG	+	chr3_3:52688437-52688456	None:intergenic	55.0%
	TCGGGGACTTTAGGTAGCTC+AGG	+	chr3_3:52688437-52688456	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	52688074	52688832	52688074	ID=Msa0457650;Name=Msa0457650
chr3_3	mRNA	52688074	52688832	52688074	ID=Msa0457650-mRNA-1;Parent=Msa0457650;Name=Msa0457650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|252
chr3_3	exon	52688074	52688832	52688074	ID=Msa0457650-mRNA-1:exon:10153;Parent=Msa0457650-mRNA-1
chr3_3	CDS	52688074	52688832	52688074	ID=Msa0457650-mRNA-1:cds;Parent=Msa0457650-mRNA-1

Gene Sequence

>Msa0457650

ATGGCTTACATCAATTTGCCAAAAATTATTTTTCCATTAATGATTCTAGCTATACTATCCGCCAAGAGTATTACAATGGTTGTCGGGGCACGCAATCTTCTAGAGTCGAACATACCTGAGGTTCCAAAACTTGATTTTCCACCTATACCAAAGCCTGAGCTTCCTAAGATTCCTGAATTACCTAAGCCAGAATTGCCTAAGGTACCTGAATTGCCAAAGCCAGAATTACCTAAGGTACCTGAACTTCCAAAGCCTGAGCTACCTAAGTTTAATGTTCCTGAATTGCCAAAACCCGAGTTTCCCAAAGTTCCTGAGTTGCCTAAAGTTCCCGAGTTGCCTAAGTTCCCTGAATTGCCCAAACCTGAGCTACCTAAAGTCCCCGAATTGTCTATGCCAGAAATTCCAAAGATGCCTGAATTGCCAAAGCCTGAGTTACCTAAATTTATTGCCCCTGAATTACCAAAACCCGAGCAACTTAAAGTACCTGAATTGCCAAAACATGAACTACCTAAGGTCTCTGAGTTGCCCAAACCAGATATCCCTAAGGTACCTGAATTACCAAAACCCGAGCTACCAAAAGTCTCTGAGTTGCCCAAGCCAGAAATACCAAAGGTACCTGAATTACCAAAGCTAGAGTTACCTCAGATACCTGAATTGACAAAGCCTCAACTACCTAAAGTTAATGTCCCTGAACTGCCAAAACCCGAGTTACCTAAATTCCCTGAAACTCCTAAAGATGTTCCAACCAATACTCCTTAA

Protein sequence

>Msa0457650

MAYINLPKIIFPLMILAILSAKSITMVVGARNLLESNIPEVPKLDFPPIPKPELPKIPELPKPELPKVPELPKPELPKVPELPKPELPKFNVPELPKPEFPKVPELPKVPELPKFPELPKPELPKVPELSMPEIPKMPELPKPELPKFIAPELPKPEQLKVPELPKHELPKVSELPKPDIPKVPELPKPELPKVSELPKPEIPKVPELPKLELPQIPELTKPQLPKVNVPELPKPELPKFPETPKDVPTNTP*