Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101350 | A0A072VE42 | 73.333 | 120 | 22 | 1 | 1 | 120 | 94 | 203 | 5.13e-55 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050940 | Msa0101350 | 0.853201 | 2.795114e-61 | -8.615850e-47 |
| Msa0054640 | Msa0101350 | 0.847898 | 8.638992e-60 | -8.615850e-47 |
| Msa0101350 | Msa0145670 | 0.861659 | 8.784744e-64 | -8.615850e-47 |
| Msa0101350 | Msa0298940 | 0.805947 | 1.043543e-49 | -8.615850e-47 |
| Msa0101350 | Msa0715310 | 0.800668 | 1.293867e-48 | -8.615850e-47 |
| Msa0101350 | Msa0725480 | -0.803962 | 2.714382e-49 | -8.615850e-47 |
| Msa0101350 | Msa0766100 | -0.800929 | 1.144511e-48 | -8.615850e-47 |
| Msa0101350 | Msa0792510 | 0.802592 | 5.213789e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101350 | MtrunA17_Chr8g0341541 | 64.706 | 119 | 32 | 1 | 2 | 120 | 123 | 231 | 6.71e-42 | 145 |
| Msa0101350 | MtrunA17_Chr1g0154541 | 82.857 | 70 | 12 | 0 | 1 | 70 | 24 | 93 | 3.54e-40 | 129 |
| Msa0101350 | MtrunA17_Chr8g0341561 | 51.087 | 92 | 43 | 1 | 31 | 120 | 1 | 92 | 2.44e-19 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101350 | AT1G51720.4 | 55.932 | 118 | 42 | 2 | 3 | 120 | 124 | 231 | 9.26e-35 | 125 |
| Msa0101350 | AT1G51720.2 | 55.932 | 118 | 42 | 2 | 3 | 120 | 124 | 231 | 2.46e-34 | 124 |
| Msa0101350 | AT1G51720.1 | 55.932 | 118 | 42 | 2 | 3 | 120 | 124 | 231 | 2.68e-34 | 125 |
| Msa0101350 | AT1G51720.3 | 55.932 | 118 | 42 | 2 | 3 | 120 | 124 | 231 | 2.68e-34 | 125 |
Find 169 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGATTGATTTAGAAAT+TGG | 0.182727 | 1_3:-7967746 | Msa0101350:five_prime_UTR |
| TTTCTGATCAAACATGATTT+TGG | 0.192248 | 1_3:+7965909 | None:intergenic |
| ATTCTAAAGCTACACTAAAA+AGG | 0.202720 | 1_3:-7966427 | Msa0101350:CDS |
| TGCTATGTCTGTAGAGAATT+TGG | 0.214183 | 1_3:-7967477 | Msa0101350:CDS |
| ATTGGTAATACTACAGTAAT+TGG | 0.223166 | 1_3:-7967708 | Msa0101350:five_prime_UTR |
| ATATTAATATTATCCTCTTT+TGG | 0.231847 | 1_3:+7965752 | None:intergenic |
| TTTATATTAGGTTTATATAT+TGG | 0.252291 | 1_3:+7965937 | None:intergenic |
| AATGGTTTGCCTGTTGAATC+TGG | 0.261134 | 1_3:-7965279 | Msa0101350:three_prime_UTR |
| GAGCATCTACATCTATGTTT+TGG | 0.271503 | 1_3:+7968466 | None:intergenic |
| TTGTATAATCTTTGCGCTCC+TGG | 0.276804 | 1_3:+7963027 | None:intergenic |
| CAGATTTCTGCTTTGTGCTC+TGG | 0.291560 | 1_3:+7963275 | None:intergenic |
| GTCAAGCCCGTTAACATAAA+AGG | 0.293370 | 1_3:-7967315 | Msa0101350:intron |
| TTACATATTTATTGCATGTT+TGG | 0.293744 | 1_3:+7965856 | None:intergenic |
| CAAATTTGATGTAAAACTTA+AGG | 0.294936 | 1_3:-7966204 | Msa0101350:three_prime_UTR |
| TTCACTGTGAAGCATGTATT+TGG | 0.298588 | 1_3:+7965682 | None:intergenic |
| CACTTTCTTTCAAATTCTTA+AGG | 0.298986 | 1_3:-7968417 | Msa0101350:five_prime_UTR |
| ATCTGAGGAACTCCCTAAAA+TGG | 0.323801 | 1_3:-7963132 | Msa0101350:three_prime_UTR |
| AAAATATTTAAATCTAGATT+CGG | 0.324510 | 1_3:+7965658 | None:intergenic |
| ACACAGAATTTCATACAAAA+AGG | 0.336784 | 1_3:+7965432 | None:intergenic |
| AAATACAGTTCTAAAACATT+AGG | 0.336812 | 1_3:+7966264 | None:intergenic |
| AGTATTATATTAATGATAAT+CGG | 0.346642 | 1_3:-7965634 | Msa0101350:three_prime_UTR |
| TGTATAATCTTTGCGCTCCT+GGG | 0.347101 | 1_3:+7963028 | None:intergenic |
| ACTCTTCATGGGCAGGTGTT+AGG | 0.364413 | 1_3:+7963591 | None:intergenic |
| AGTAATTGGTGTGCCATTGC+GGG | 0.367017 | 1_3:-7967694 | Msa0101350:five_prime_UTR |
| AGTATTATATTAATGATAAT+CGG | 0.372934 | 1_3:-7965591 | Msa0101350:three_prime_UTR |
| TTCTGTGTAGTTTGAAAGTC+CGG | 0.374914 | 1_3:-7965417 | Msa0101350:three_prime_UTR |
| TGGTGTTTCGGAAATCAAAA+TGG | 0.376269 | 1_3:+7968486 | None:intergenic |
| AGGTTGTGAGGAGGTGTATT+GGG | 0.378063 | 1_3:-7966069 | Msa0101350:three_prime_UTR |
| CTCCTTTCAATGTAAACCTT+GGG | 0.381244 | 1_3:+7966041 | None:intergenic |
| CAGCATCAAAGTGGTGTAGA+TGG | 0.384070 | 1_3:-7965303 | Msa0101350:three_prime_UTR |
| GCATGTTTGGATACACAATA+TGG | 0.394437 | 1_3:+7965869 | None:intergenic |
| CTCTTCCATCAGCGAGGGAT+TGG | 0.401499 | 1_3:-7963342 | Msa0101350:three_prime_UTR |
| AAATTTGATGTAAAACTTAA+GGG | 0.402139 | 1_3:-7966203 | Msa0101350:three_prime_UTR |
| CTGTTGAATCTGGGTGTGCC+TGG | 0.408185 | 1_3:-7965269 | Msa0101350:three_prime_UTR |
| TCTGATCATGAAACTCTTCA+TGG | 0.408689 | 1_3:+7963579 | None:intergenic |
| TTCAATTAGTAGCGGATTTG+CGG | 0.410105 | 1_3:-7965705 | Msa0101350:three_prime_UTR |
| AGTGATCTTACAACGTATCT+TGG | 0.410668 | 1_3:-7965241 | Msa0101350:three_prime_UTR |
| GAGGTTGTGAGGAGGTGTAT+TGG | 0.413244 | 1_3:-7966070 | Msa0101350:three_prime_UTR |
| ATTCCAGTAAAATCTCTTGA+TGG | 0.413383 | 1_3:-7963230 | Msa0101350:three_prime_UTR |
| TCGTGAGGCCGAGTTCATTC+AGG | 0.413513 | 1_3:-7966399 | Msa0101350:CDS |
| TCCCACCAGCGTCAATAATC+TGG | 0.415486 | 1_3:+7965378 | None:intergenic |
| AAATATTTAAATCTAGATTC+GGG | 0.424799 | 1_3:+7965659 | None:intergenic |
| GCCCTTCTCTTTACCGCACG+TGG | 0.428781 | 1_3:-7965791 | Msa0101350:three_prime_UTR |
| AAAATGGAAGATTTGAAGAA+TGG | 0.435371 | 1_3:+7968502 | None:intergenic |
| ATTCCAGTCGAATCGAGGTT+TGG | 0.437091 | 1_3:-7966132 | Msa0101350:three_prime_UTR |
| TCAAACAAAAGATGGTAGAT+AGG | 0.439997 | 1_3:+7965463 | None:intergenic |
| TGGACTTGGAGAACTTCAAT+TGG | 0.441003 | 1_3:-7967726 | Msa0101350:five_prime_UTR |
| AATGAGCTGTCACCTACAAA+TGG | 0.442025 | 1_3:-7967539 | Msa0101350:five_prime_UTR |
| GTGTGGCTTGAGATTGTGTT+CGG | 0.447874 | 1_3:+7965176 | None:intergenic |
| CAGGCACACCCAGATTCAAC+AGG | 0.452283 | 1_3:+7965270 | None:intergenic |
| CAAAGTGGTGTAGATGGAAA+TGG | 0.454103 | 1_3:-7965297 | Msa0101350:three_prime_UTR |
| GTTCAGATTTACATGGTTGA+GGG | 0.460325 | 1_3:-7965351 | Msa0101350:three_prime_UTR |
| TGATCAGACATTTGCTCCAC+AGG | 0.463827 | 1_3:-7963534 | Msa0101350:three_prime_UTR |
| CAGCTACCTTCATTCCCGTT+AGG | 0.464402 | 1_3:+7967435 | None:intergenic |
| AGTTCAGATTTACATGGTTG+AGG | 0.468878 | 1_3:-7965352 | Msa0101350:three_prime_UTR |
| AACCCAAGGTTTACATTGAA+AGG | 0.469453 | 1_3:-7966043 | Msa0101350:three_prime_UTR |
| ATCGACACAAGCCCATTTGT+AGG | 0.471123 | 1_3:+7967527 | None:intergenic |
| AAACCGGCTTGTAACTTGTA+AGG | 0.473647 | 1_3:+7965978 | None:intergenic |
| TCTCCTTTCAATGTAAACCT+TGG | 0.474054 | 1_3:+7966040 | None:intergenic |
| AGGCATCACTTGGTTGTGAT+TGG | 0.474545 | 1_3:-7967770 | Msa0101350:five_prime_UTR |
| TTCCATCAGCGAGGGATTGG+AGG | 0.477699 | 1_3:-7963339 | Msa0101350:three_prime_UTR |
| CTCAGATTCAGCAAGTGAAT+AGG | 0.481949 | 1_3:-7967593 | Msa0101350:five_prime_UTR |
| ATTGATTTAGAAATTGGACT+TGG | 0.482224 | 1_3:-7967740 | Msa0101350:five_prime_UTR |
| TTAACTCATCCATACAAAAC+CGG | 0.483519 | 1_3:+7965962 | None:intergenic |
| GCAGGCAGCTCCAGTGCTAG+TGG | 0.489009 | 1_3:-7963485 | Msa0101350:three_prime_UTR |
| GAGAGATATGTTGCTTATGA+TGG | 0.489533 | 1_3:-7965831 | Msa0101350:three_prime_UTR |
| CAGTAATTGGTGTGCCATTG+CGG | 0.489630 | 1_3:-7967695 | Msa0101350:five_prime_UTR |
| ATGGTTTGCCTGTTGAATCT+GGG | 0.491828 | 1_3:-7965278 | Msa0101350:three_prime_UTR |
| AGACGCTTATTGTCTTCAAT+CGG | 0.493517 | 1_3:-7967361 | Msa0101350:CDS |
| GTTTACATTGAAAGGAGATA+AGG | 0.493782 | 1_3:-7966035 | Msa0101350:three_prime_UTR |
| CCATCGCGCCACTCACTACA+TGG | 0.498663 | 1_3:-7968547 | Msa0101350:five_prime_UTR |
| TTCTCTTTACCGCACGTGGG+TGG | 0.501934 | 1_3:-7965787 | Msa0101350:three_prime_UTR |
| TGAAAACATCAAACAAAAGA+TGG | 0.505067 | 1_3:+7965455 | None:intergenic |
| CAATCCCTCGCTGATGGAAG+AGG | 0.507485 | 1_3:+7963343 | None:intergenic |
| TCTTTACCGCACGTGGGTGG+AGG | 0.511049 | 1_3:-7965784 | Msa0101350:three_prime_UTR |
| ATTATTATTGTGATCTTCGA+GGG | 0.511112 | 1_3:+7967395 | None:intergenic |
| TTGTAAGATCACTTTGCGCC+AGG | 0.512310 | 1_3:+7965251 | None:intergenic |
| CAGACATAGCAGAAAATCCT+TGG | 0.512560 | 1_3:+7967489 | None:intergenic |
| GATTATAGTGACGGTAGGGC+AGG | 0.515021 | 1_3:-7963503 | Msa0101350:three_prime_UTR |
| GTAGAAGTTCCGATGGATCA+TGG | 0.515239 | 1_3:-7963397 | Msa0101350:three_prime_UTR |
| CGCACGTGGGTGGAGGTTGG+TGG | 0.516607 | 1_3:-7965777 | Msa0101350:three_prime_UTR |
| TACCGCACGTGGGTGGAGGT+TGG | 0.518453 | 1_3:-7965780 | Msa0101350:three_prime_UTR |
| CATTAATATAATACTTGCAA+CGG | 0.520425 | 1_3:+7965599 | None:intergenic |
| GAATGAGGTTGATGAGAAGC+AGG | 0.521334 | 1_3:-7963195 | Msa0101350:three_prime_UTR |
| TCATGAAACTCTTCATGGGC+AGG | 0.521376 | 1_3:+7963584 | None:intergenic |
| ACTATCACTTCCACTAGCAC+TGG | 0.522218 | 1_3:+7963475 | None:intergenic |
| ACCCTCCAATCCCTCGCTGA+TGG | 0.524742 | 1_3:+7963337 | None:intergenic |
| AAAGTAACAAGAACATAAAG+AGG | 0.526451 | 1_3:-7966089 | Msa0101350:three_prime_UTR |
| AACATCGGAGAAATCCTAAC+GGG | 0.526867 | 1_3:-7967449 | Msa0101350:CDS |
| AGAAATCCTAACGGGAATGA+AGG | 0.527355 | 1_3:-7967441 | Msa0101350:CDS |
| GCTTGTAACTTGTAAGGCAA+GGG | 0.530784 | 1_3:+7965984 | None:intergenic |
| TGAAAATAGTTTATAAAGAG+TGG | 0.532196 | 1_3:-7966010 | Msa0101350:three_prime_UTR |
| CAAACTCTTGAGAGAGTCAT+CGG | 0.533852 | 1_3:-7966359 | Msa0101350:CDS |
| ATGAGCTGTCACCTACAAAT+GGG | 0.538116 | 1_3:-7967538 | Msa0101350:five_prime_UTR |
| GGCTTGTAACTTGTAAGGCA+AGG | 0.539244 | 1_3:+7965983 | None:intergenic |
| GAGGTTGGTGGCCCCAAAAG+AGG | 0.539544 | 1_3:-7965765 | Msa0101350:three_prime_UTR |
| AATTATTATTGTGATCTTCG+AGG | 0.540997 | 1_3:+7967394 | None:intergenic |
| ACACCAAACCTCGATTCGAC+TGG | 0.541447 | 1_3:+7966129 | None:intergenic |
| AGCAGAAGTAGAAGTTCCGA+TGG | 0.544025 | 1_3:-7963404 | Msa0101350:three_prime_UTR |
| TCTTGTCAAAATGCGGTCAC+AGG | 0.545559 | 1_3:-7965202 | Msa0101350:three_prime_UTR |
| ACACAATATGGTGTCAAATG+TGG | 0.546797 | 1_3:+7965881 | None:intergenic |
| ACAAGCACAGAGGCATCACT+TGG | 0.549638 | 1_3:-7967780 | Msa0101350:five_prime_UTR |
| CACAATATGGTGTCAAATGT+GGG | 0.551299 | 1_3:+7965882 | None:intergenic |
| ACCCACGTGCGGTAAAGAGA+AGG | 0.554176 | 1_3:+7965789 | None:intergenic |
| GAAAGTAACAGTAGCGACAG+TGG | 0.556540 | 1_3:-7963452 | Msa0101350:three_prime_UTR |
| TACCAGATTATTGACGCTGG+TGG | 0.556709 | 1_3:-7965380 | Msa0101350:three_prime_UTR |
| GATTATTGACGCTGGTGGGA+AGG | 0.559463 | 1_3:-7965375 | Msa0101350:three_prime_UTR |
| ATGTCTGTAGAGAATTTGGC+TGG | 0.559466 | 1_3:-7967473 | Msa0101350:CDS |
| GAGAATTTGGCTGGAAACAT+CGG | 0.559645 | 1_3:-7967464 | Msa0101350:CDS |
| CTGATCATGAAACTCTTCAT+GGG | 0.568087 | 1_3:+7963580 | None:intergenic |
| TTGCCTTACAAGTTACAAGC+CGG | 0.568841 | 1_3:-7965981 | Msa0101350:three_prime_UTR |
| CCATGTAGTGAGTGGCGCGA+TGG | 0.569475 | 1_3:+7968547 | None:intergenic |
| TGGAAAATCTACGCAGAATG+AGG | 0.569803 | 1_3:-7963210 | Msa0101350:three_prime_UTR |
| TGTTGTTAAAAGTTGGAGTG+AGG | 0.570100 | 1_3:-7967562 | Msa0101350:five_prime_UTR |
| GGAAGGAGTTCAGATTTACA+TGG | 0.572256 | 1_3:-7965358 | Msa0101350:three_prime_UTR |
| GCGATGGAGATTGTGTTAAG+AGG | 0.574384 | 1_3:+7968563 | None:intergenic |
| ATTATAAAGTAACCGTTGCA+TGG | 0.579176 | 1_3:-7965568 | Msa0101350:three_prime_UTR |
| CCCTTCTCTTTACCGCACGT+GGG | 0.579977 | 1_3:-7965790 | Msa0101350:three_prime_UTR |
| GGAAGATTTGAAGAATGGAA+AGG | 0.583032 | 1_3:+7968507 | None:intergenic |
| GCATGTTGAGAGCAAGCAGA+TGG | 0.584090 | 1_3:-7967655 | Msa0101350:five_prime_UTR |
| AGCGACAGTGGAAGTGACAG+TGG | 0.584113 | 1_3:-7963440 | Msa0101350:three_prime_UTR |
| CCCACGTGCGGTAAAGAGAA+GGG | 0.584382 | 1_3:+7965790 | None:intergenic |
| AATCGATTCCAGTCGAATCG+AGG | 0.587256 | 1_3:-7966137 | Msa0101350:three_prime_UTR |
| CTGTGGATTTCAATTAGTAG+CGG | 0.587969 | 1_3:-7965713 | Msa0101350:three_prime_UTR |
| AAACTCTTGAGAGAGTCATC+GGG | 0.590180 | 1_3:-7966358 | Msa0101350:CDS |
| TCCATCAGCGAGGGATTGGA+GGG | 0.593348 | 1_3:-7963338 | Msa0101350:three_prime_UTR |
| ATATGATTATCAACAGCCCC+AGG | 0.594026 | 1_3:-7963045 | Msa0101350:three_prime_UTR |
| AAAATATGCAGAAGAGACAA+AGG | 0.596330 | 1_3:-7963075 | Msa0101350:three_prime_UTR |
| ACTCTCACTCCATGATCCAT+CGG | 0.596420 | 1_3:+7963388 | None:intergenic |
| GTATAATCTTTGCGCTCCTG+GGG | 0.596744 | 1_3:+7963029 | None:intergenic |
| ATATATAAGAATACCATCGC+AGG | 0.603433 | 1_3:-7965492 | Msa0101350:three_prime_UTR |
| CAAGAGTTTGAACTACCTTG+TGG | 0.604602 | 1_3:+7966372 | None:intergenic |
| ACCAGATTATTGACGCTGGT+GGG | 0.607256 | 1_3:-7965379 | Msa0101350:three_prime_UTR |
| TGAGAGCAAGCAGATGGTGG+TGG | 0.612195 | 1_3:-7967649 | Msa0101350:five_prime_UTR |
| TGAATGAACTCGGCCTCACG+AGG | 0.613144 | 1_3:+7966401 | None:intergenic |
| CTTGTAACTTGTAAGGCAAG+GGG | 0.613780 | 1_3:+7965985 | None:intergenic |
| AGGAGCGCAAAGATTATACA+AGG | 0.614784 | 1_3:-7963025 | Msa0101350:three_prime_UTR |
| TTAGGTACTGATCTGAGTTG+TGG | 0.617162 | 1_3:-7967188 | Msa0101350:intron |
| CACCAACCTCCACCCACGTG+CGG | 0.622694 | 1_3:+7965778 | None:intergenic |
| TCTGCAAAAGATCCCCGCAA+TGG | 0.624441 | 1_3:+7967681 | None:intergenic |
| CTAAGAATCTTGTCAAAATG+CGG | 0.624992 | 1_3:-7965209 | Msa0101350:three_prime_UTR |
| ATGTGAAAGACGGAATGCCA+AGG | 0.626691 | 1_3:-7967506 | Msa0101350:exon |
| AGATAGGAACTAACCTGCGA+TGG | 0.630479 | 1_3:+7965479 | None:intergenic |
| TTCACCACACGTGCATACTG+TGG | 0.631677 | 1_3:-7965730 | Msa0101350:three_prime_UTR |
| AAGAACATAAAGAGGTTGTG+AGG | 0.633363 | 1_3:-7966081 | Msa0101350:three_prime_UTR |
| GTAATTGGTGTGCCATTGCG+GGG | 0.634642 | 1_3:-7967693 | Msa0101350:five_prime_UTR |
| GTTCATTCAGGCAGTCCACA+AGG | 0.636078 | 1_3:-7966387 | Msa0101350:CDS |
| GTGGACTGCCTGAATGAACT+CGG | 0.638172 | 1_3:+7966391 | None:intergenic |
| GGGATTGGAGGGTACTGATG+AGG | 0.640194 | 1_3:-7963327 | Msa0101350:three_prime_UTR |
| GATCAGACATTTGCTCCACA+TGG | 0.640613 | 1_3:-7963563 | Msa0101350:three_prime_UTR |
| TTTGCGGATGAATTATGCAA+TGG | 0.641682 | 1_3:-7967822 | Msa0101350:five_prime_UTR |
| CATCATCACCATGTAGTGAG+TGG | 0.643124 | 1_3:+7968539 | None:intergenic |
| AGCTTTGAACAGCATCAAAG+TGG | 0.644455 | 1_3:-7965312 | Msa0101350:three_prime_UTR |
| GATACCTCTTCCATCAGCGA+GGG | 0.647002 | 1_3:-7963347 | Msa0101350:three_prime_UTR |
| AACATAAAGAGGTTGTGAGG+AGG | 0.648063 | 1_3:-7966078 | Msa0101350:three_prime_UTR |
| TCGTACCAGATTATTGACGC+TGG | 0.652352 | 1_3:-7965383 | Msa0101350:three_prime_UTR |
| CAGACATTTGCTCCACAGGG+AGG | 0.660250 | 1_3:-7963530 | Msa0101350:three_prime_UTR |
| AAACATCGGAGAAATCCTAA+CGG | 0.661748 | 1_3:-7967450 | Msa0101350:CDS |
| TGGAGTGAGAGTAGTAGTGA+CGG | 0.666612 | 1_3:-7963377 | Msa0101350:three_prime_UTR |
| AAATTAGGTACACCATGCAA+CGG | 0.675669 | 1_3:+7965556 | None:intergenic |
| GATCAGACATTTGCTCCACA+GGG | 0.681606 | 1_3:-7963533 | Msa0101350:three_prime_UTR |
| TGTTGAGAGCAAGCAGATGG+TGG | 0.681866 | 1_3:-7967652 | Msa0101350:five_prime_UTR |
| GCTTGTGTCGATGTGAAAGA+CGG | 0.687824 | 1_3:-7967516 | Msa0101350:five_prime_UTR |
| GTCTGATCATGAAGTCCATG+TGG | 0.692214 | 1_3:+7963548 | None:intergenic |
| AAATCCACAGTATGCACGTG+TGG | 0.703677 | 1_3:+7965726 | None:intergenic |
| TGATACCTCTTCCATCAGCG+AGG | 0.704191 | 1_3:-7963348 | Msa0101350:three_prime_UTR |
| CTATAATCAAAACCTCCCTG+TGG | 0.708081 | 1_3:+7963518 | None:intergenic |
| AGTGTGTGACAATACTTGTG+TGG | 0.743585 | 1_3:+7965159 | None:intergenic |
| GTTCTATTCAACAAGCACAG+AGG | 0.768031 | 1_3:-7967790 | Msa0101350:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAATTTAATATTATTC+AGG | + | chr1_3:7964979-7964998 | None:intergenic | 10.0% |
| !! | TTTATATTAGGTTTATATAT+TGG | + | chr1_3:7965652-7965671 | None:intergenic | 10.0% |
| !!! | ATTTTGGTAAAATTTATATT+AGG | + | chr1_3:7965664-7965683 | None:intergenic | 10.0% |
| !! | AAAATATTTAAATCTAGATT+CGG | + | chr1_3:7965931-7965950 | None:intergenic | 10.0% |
| !! | AGTATTATATTAATGATAAT+CGG | - | chr1_3:7965952-7965971 | Msa0101350:three_prime_UTR | 10.0% |
| !! | AGTATTATATTAATGATAAT+CGG | - | chr1_3:7965952-7965971 | Msa0101350:three_prime_UTR | 10.0% |
| !!! | ATCTTAATATATTTTTTAGA+TGG | - | chr1_3:7966630-7966649 | Msa0101350:intron | 10.0% |
| !! | CAAATTTGATTATTATTTGT+GGG | - | chr1_3:7963233-7963252 | Msa0101350:three_prime_UTR | 15.0% |
| !! | AAATGATTGTTAATTGATAT+AGG | - | chr1_3:7963367-7963386 | Msa0101350:three_prime_UTR | 15.0% |
| !! | ATTCACATAATAATATCAAA+AGG | + | chr1_3:7963658-7963677 | None:intergenic | 15.0% |
| !!! | TTTAATATGATTTCTAAAAG+AGG | - | chr1_3:7963690-7963709 | Msa0101350:intron | 15.0% |
| !!! | ATTTTTCTAATATTTGAGTT+AGG | - | chr1_3:7964380-7964399 | Msa0101350:intron | 15.0% |
| !! | ACCAATAATTAAAATGATTT+GGG | + | chr1_3:7964446-7964465 | None:intergenic | 15.0% |
| !!! | TTTAATTTCTTGATAAAAGA+TGG | - | chr1_3:7965067-7965086 | Msa0101350:intron | 15.0% |
| !! | AAATTTGATGTAAAACTTAA+GGG | - | chr1_3:7965383-7965402 | Msa0101350:three_prime_UTR | 15.0% |
| !!! | TATTAATATTATCCTCTTTT+GGG | + | chr1_3:7965836-7965855 | None:intergenic | 15.0% |
| !!! | ATATTAATATTATCCTCTTT+TGG | + | chr1_3:7965837-7965856 | None:intergenic | 15.0% |
| !! | AAATATTTAAATCTAGATTC+GGG | + | chr1_3:7965930-7965949 | None:intergenic | 15.0% |
| !!! | TTTTTCTTGTTAATTTATCA+CGG | - | chr1_3:7966552-7966571 | Msa0101350:intron | 15.0% |
| !! | ACTTTATGTGAAAATAAAAT+CGG | + | chr1_3:7967645-7967664 | None:intergenic | 15.0% |
| !! | GCAAATTTGATTATTATTTG+TGG | - | chr1_3:7963232-7963251 | Msa0101350:three_prime_UTR | 20.0% |
| !! | TTCAAACTCAAATAAAGTAA+TGG | + | chr1_3:7963292-7963311 | None:intergenic | 20.0% |
| !! | ACATTTATGTATTTGAAAGA+AGG | - | chr1_3:7963434-7963453 | Msa0101350:three_prime_UTR | 20.0% |
| !! | AGAAAAATGTTGTTAAAAGT+TGG | - | chr1_3:7964017-7964036 | Msa0101350:intron | 20.0% |
| !! | CATTAAATCAAATATGTTCA+TGG | - | chr1_3:7964347-7964366 | Msa0101350:intron | 20.0% |
| !! | CCAATAATTAAAATGATTTG+GGG | + | chr1_3:7964445-7964464 | None:intergenic | 20.0% |
| !! | GACCAATAATTAAAATGATT+TGG | + | chr1_3:7964447-7964466 | None:intergenic | 20.0% |
| !! | TATATATTCATCATGAACAT+GGG | + | chr1_3:7964469-7964488 | None:intergenic | 20.0% |
| !! | TTATATATTCATCATGAACA+TGG | + | chr1_3:7964470-7964489 | None:intergenic | 20.0% |
| !!! | GTTGAGAACATAATTTTATT+TGG | - | chr1_3:7964591-7964610 | Msa0101350:intron | 20.0% |
| !!! | AAATACAGTTCTAAAACATT+AGG | + | chr1_3:7965325-7965344 | None:intergenic | 20.0% |
| !! | CAAATTTGATGTAAAACTTA+AGG | - | chr1_3:7965382-7965401 | Msa0101350:three_prime_UTR | 20.0% |
| !! | TGAAAATAGTTTATAAAGAG+TGG | - | chr1_3:7965576-7965595 | Msa0101350:three_prime_UTR | 20.0% |
| !! | TTACATATTTATTGCATGTT+TGG | + | chr1_3:7965733-7965752 | None:intergenic | 20.0% |
| !!! | ATTAATATTATCCTCTTTTG+GGG | + | chr1_3:7965835-7965854 | None:intergenic | 20.0% |
| !! | CATTAATATAATACTTGCAA+CGG | + | chr1_3:7965990-7966009 | None:intergenic | 20.0% |
| !!! | TTTTGGAAAACAATCAAATT+AGG | + | chr1_3:7966048-7966067 | None:intergenic | 20.0% |
| !! | AATTAACAAGAAAAAGGATA+GGG | + | chr1_3:7966547-7966566 | None:intergenic | 20.0% |
| !! | AAATTAACAAGAAAAAGGAT+AGG | + | chr1_3:7966548-7966567 | None:intergenic | 20.0% |
| !! | GTGATAAATTAACAAGAAAA+AGG | + | chr1_3:7966553-7966572 | None:intergenic | 20.0% |
| !!! | TATATTTTTTAGATGGTAAG+TGG | - | chr1_3:7966637-7966656 | Msa0101350:intron | 20.0% |
| !!! | TAATGATTTTTATTTTGCTC+AGG | - | chr1_3:7966846-7966865 | Msa0101350:intron | 20.0% |
| !! | AATGGCAGAATATAAATAAT+AGG | - | chr1_3:7967169-7967188 | Msa0101350:intron | 20.0% |
| !!! | TTTTTATTGTAACATTTCCT+AGG | - | chr1_3:7967291-7967310 | Msa0101350:intron | 20.0% |
| !! | ACAATGGAAATTAATATTGA+TGG | + | chr1_3:7967364-7967383 | None:intergenic | 20.0% |
| !! | ATCAATATTAATTTCCATTG+TGG | - | chr1_3:7967363-7967382 | Msa0101350:CDS | 20.0% |
| !!! | GTTAATTGTCTTATTGTTAT+TGG | + | chr1_3:7967455-7967474 | None:intergenic | 20.0% |
| ! | AAAATGGAAGATTTGAAGAA+TGG | + | chr1_3:7963087-7963106 | None:intergenic | 25.0% |
| ! | CACTTTCTTTCAAATTCTTA+AGG | - | chr1_3:7963169-7963188 | Msa0101350:three_prime_UTR | 25.0% |
| ! | AAAATTATGAGTTTCTGTTG+TGG | - | chr1_3:7963334-7963353 | Msa0101350:three_prime_UTR | 25.0% |
| ! | TATAGGCACTCATTAAATAT+AGG | - | chr1_3:7963384-7963403 | Msa0101350:three_prime_UTR | 25.0% |
| ! | ATAGGCACTCATTAAATATA+GGG | - | chr1_3:7963385-7963404 | Msa0101350:three_prime_UTR | 25.0% |
| ! | GTATTTGAAAGAAGGAATAT+TGG | - | chr1_3:7963442-7963461 | Msa0101350:three_prime_UTR | 25.0% |
| !! | GACAGAAAACGAATAATTTT+AGG | - | chr1_3:7963741-7963760 | Msa0101350:intron | 25.0% |
| !!! | AACGAATAATTTTAGGTTTG+CGG | - | chr1_3:7963748-7963767 | Msa0101350:intron | 25.0% |
| !! | GAAGAGATTGATTTAGAAAT+TGG | - | chr1_3:7963840-7963859 | Msa0101350:intron | 25.0% |
| !! | ATTGATTTAGAAATTGGACT+TGG | - | chr1_3:7963846-7963865 | Msa0101350:intron | 25.0% |
| !! | ATTGGTAATACTACAGTAAT+TGG | - | chr1_3:7963878-7963897 | Msa0101350:intron | 25.0% |
| ! | ATTATTATTGTGATCTTCGA+GGG | + | chr1_3:7964194-7964213 | None:intergenic | 25.0% |
| ! | AATTATTATTGTGATCTTCG+AGG | + | chr1_3:7964195-7964214 | None:intergenic | 25.0% |
| !! | AGCTGTAATTTTATATTTGG+AGG | + | chr1_3:7964251-7964270 | None:intergenic | 25.0% |
| !! | GACAGCTGTAATTTTATATT+TGG | + | chr1_3:7964254-7964273 | None:intergenic | 25.0% |
| !!! | CCCCAAATCATTTTAATTAT+TGG | - | chr1_3:7964442-7964461 | Msa0101350:intron | 25.0% |
| ! | AACTCTAAACAGAATAAACA+GGG | + | chr1_3:7964770-7964789 | None:intergenic | 25.0% |
| ! | AAACTCTAAACAGAATAAAC+AGG | + | chr1_3:7964771-7964790 | None:intergenic | 25.0% |
| !! | TATTCTGTTTAGAGTTTGTT+TGG | - | chr1_3:7964774-7964793 | Msa0101350:intron | 25.0% |
| ! | CTTCAATCATAGAAATTGTT+AGG | + | chr1_3:7965113-7965132 | None:intergenic | 25.0% |
| !!! | ATTCTAAAGCTACACTAAAA+AGG | - | chr1_3:7965159-7965178 | Msa0101350:intron | 25.0% |
| !!! | TTCTAAAGCTACACTAAAAA+GGG | - | chr1_3:7965160-7965179 | Msa0101350:intron | 25.0% |
| ! | AAAGTAACAAGAACATAAAG+AGG | - | chr1_3:7965497-7965516 | Msa0101350:three_prime_UTR | 25.0% |
| !! | TTTCTGATCAAACATGATTT+TGG | + | chr1_3:7965680-7965699 | None:intergenic | 25.0% |
| !!! | CTTATGATGGACTAAAAAAT+GGG | - | chr1_3:7965768-7965787 | Msa0101350:three_prime_UTR | 25.0% |
| !! | AAAAAAGTTTGTCACGTTTT+TGG | + | chr1_3:7966065-7966084 | None:intergenic | 25.0% |
| ! | TGAAAACATCAAACAAAAGA+TGG | + | chr1_3:7966134-7966153 | None:intergenic | 25.0% |
| ! | ACACAGAATTTCATACAAAA+AGG | + | chr1_3:7966157-7966176 | None:intergenic | 25.0% |
| !! | AGACAATATTTTCAAAGACA+TGG | + | chr1_3:7966503-7966522 | None:intergenic | 25.0% |
| ! | CTTCTAAATGAATTGATTAG+TGG | - | chr1_3:7967112-7967131 | Msa0101350:intron | 25.0% |
| ! | TAAATGAATTGATTAGTGGT+GGG | - | chr1_3:7967116-7967135 | Msa0101350:intron | 25.0% |
| !!! | ATAATAGGATTAGCTATTCT+TGG | - | chr1_3:7967184-7967203 | Msa0101350:CDS | 25.0% |
| !!! | TAATAGGATTAGCTATTCTT+GGG | - | chr1_3:7967185-7967204 | Msa0101350:CDS | 25.0% |
| ! | CTAGTGTTAAAAGTCTAAAT+AGG | - | chr1_3:7967577-7967596 | Msa0101350:five_prime_UTR | 25.0% |
| ! | GTGCACCTTAAATAAATTAT+GGG | + | chr1_3:7967708-7967727 | None:intergenic | 25.0% |
| ! | AGTGCACCTTAAATAAATTA+TGG | + | chr1_3:7967709-7967728 | None:intergenic | 25.0% |
| !! | TTTTCTAACTCTATCAGAAA+TGG | + | chr1_3:7968495-7968514 | None:intergenic | 25.0% |
| !!! | AAGGAGTTTGTTTTATGAAA+GGG | - | chr1_3:7968580-7968599 | Msa0101350:five_prime_UTR | 25.0% |
| !!! | ACATCTATGTTTTGGTGTTT+CGG | + | chr1_3:7963115-7963134 | None:intergenic | 30.0% |
| GATTATTATTTGTGGGTCAT+TGG | - | chr1_3:7963240-7963259 | Msa0101350:three_prime_UTR | 30.0% | |
| CTCATTAAATATAGGGTTGA+TGG | - | chr1_3:7963392-7963411 | Msa0101350:three_prime_UTR | 30.0% | |
| TCAAAATAGTAGCATTGTCA+AGG | + | chr1_3:7963468-7963487 | None:intergenic | 30.0% | |
| ATTGCTTGGCTTAATTTAGT+TGG | + | chr1_3:7963511-7963530 | None:intergenic | 30.0% | |
| TGAATGATACTTCAGATTGA+TGG | - | chr1_3:7963541-7963560 | Msa0101350:three_prime_UTR | 30.0% | |
| AGATGTCAAAAAGATGCATT+TGG | - | chr1_3:7964502-7964521 | Msa0101350:intron | 30.0% | |
| AGTGGTCAATAAAAATGGTA+AGG | + | chr1_3:7964679-7964698 | None:intergenic | 30.0% | |
| TGCAAAGTGGTCAATAAAAA+TGG | + | chr1_3:7964684-7964703 | None:intergenic | 30.0% | |
| ACTCTAAACAGAATAAACAG+GGG | + | chr1_3:7964769-7964788 | None:intergenic | 30.0% | |
| ATCAATCTCTGTATCTGTTA+TGG | - | chr1_3:7964903-7964922 | Msa0101350:intron | 30.0% | |
| TGCACACTGAAATTTCAAAA+TGG | + | chr1_3:7965013-7965032 | None:intergenic | 30.0% | |
| AATTAAATAGTGCGCAGTTA+AGG | + | chr1_3:7965054-7965073 | None:intergenic | 30.0% | |
| ! | AAAAGATGGTTGCATTGTTT+TGG | - | chr1_3:7965081-7965100 | Msa0101350:intron | 30.0% |
| ! | AAAGATGGTTGCATTGTTTT+GGG | - | chr1_3:7965082-7965101 | Msa0101350:intron | 30.0% |
| GTTTACATTGAAAGGAGATA+AGG | - | chr1_3:7965551-7965570 | Msa0101350:three_prime_UTR | 30.0% | |
| TTAACTCATCCATACAAAAC+CGG | + | chr1_3:7965627-7965646 | None:intergenic | 30.0% | |
| !! | GCTTATGATGGACTAAAAAA+TGG | - | chr1_3:7965767-7965786 | Msa0101350:three_prime_UTR | 30.0% |
| ATTATAAAGTAACCGTTGCA+TGG | - | chr1_3:7965975-7965994 | Msa0101350:three_prime_UTR | 30.0% | |
| ATATATAAGAATACCATCGC+AGG | - | chr1_3:7966094-7966113 | Msa0101350:three_prime_UTR | 30.0% | |
| TCAAACAAAAGATGGTAGAT+AGG | + | chr1_3:7966126-7966145 | None:intergenic | 30.0% | |
| CTAAGAATCTTGTCAAAATG+CGG | - | chr1_3:7966377-7966396 | Msa0101350:CDS | 30.0% | |
| ! | TAAGGAGTGTATAACAAGTA+AGG | + | chr1_3:7966453-7966472 | None:intergenic | 30.0% |
| ! | TAAGAGTGTGATAACAAGTA+AGG | + | chr1_3:7966471-7966490 | None:intergenic | 30.0% |
| TGTTAATGAGAACATACACA+TGG | - | chr1_3:7966590-7966609 | Msa0101350:intron | 30.0% | |
| ! | ACTCGCATTTATAACTTTTG+AGG | - | chr1_3:7966689-7966708 | Msa0101350:intron | 30.0% |
| ! | CTCGCATTTATAACTTTTGA+GGG | - | chr1_3:7966690-7966709 | Msa0101350:intron | 30.0% |
| !!! | GCTTAGTTTTAAAGTCTTGA+CGG | - | chr1_3:7966789-7966808 | Msa0101350:intron | 30.0% |
| TGATTATTGTGGAATATGGT+AGG | - | chr1_3:7967018-7967037 | Msa0101350:intron | 30.0% | |
| GATTATTGTGGAATATGGTA+GGG | - | chr1_3:7967019-7967038 | Msa0101350:intron | 30.0% | |
| ATTATTGTGGAATATGGTAG+GGG | - | chr1_3:7967020-7967039 | Msa0101350:intron | 30.0% | |
| CTAAATGAATTGATTAGTGG+TGG | - | chr1_3:7967115-7967134 | Msa0101350:intron | 30.0% | |
| ! | AAAGTCTTTTACAGGTCAAA+TGG | + | chr1_3:7967534-7967553 | None:intergenic | 30.0% |
| ! | TTTTCACATAAAGTTAACCG+TGG | - | chr1_3:7967651-7967670 | Msa0101350:five_prime_UTR | 30.0% |
| TTGGGCCCATAATTTATTTA+AGG | - | chr1_3:7967700-7967719 | Msa0101350:five_prime_UTR | 30.0% | |
| TAACGAAAAAAAAGGGTTCT+AGG | + | chr1_3:7967786-7967805 | None:intergenic | 30.0% | |
| TGCACTGTAACGAAAAAAAA+GGG | + | chr1_3:7967793-7967812 | None:intergenic | 30.0% | |
| ACTAGTTGTAAATAGCTACA+TGG | - | chr1_3:7967852-7967871 | Msa0101350:intron | 30.0% | |
| TTGAATTTAAAGAGAACGAG+AGG | + | chr1_3:7967941-7967960 | None:intergenic | 30.0% | |
| !! | TTTTGATTATAGTGACGGTA+GGG | - | chr1_3:7968079-7968098 | Msa0101350:intron | 30.0% |
| ! | TCAAGAGATTTTACTGGAAT+GGG | + | chr1_3:7968356-7968375 | None:intergenic | 30.0% |
| ! | ATCAAGAGATTTTACTGGAA+TGG | + | chr1_3:7968357-7968376 | None:intergenic | 30.0% |
| ATTCCAGTAAAATCTCTTGA+TGG | - | chr1_3:7968356-7968375 | Msa0101350:intron | 30.0% | |
| ! | TTTCCATCAAGAGATTTTAC+TGG | + | chr1_3:7968362-7968381 | None:intergenic | 30.0% |
| TATTGAAAAAGACTCATCTG+AGG | - | chr1_3:7968439-7968458 | Msa0101350:five_prime_UTR | 30.0% | |
| AAAATATGCAGAAGAGACAA+AGG | - | chr1_3:7968511-7968530 | Msa0101350:five_prime_UTR | 30.0% | |
| !!! | CAAGGAGTTTGTTTTATGAA+AGG | - | chr1_3:7968579-7968598 | Msa0101350:five_prime_UTR | 30.0% |
| !!! | AGGAGTTTGTTTTATGAAAG+GGG | - | chr1_3:7968581-7968600 | Msa0101350:five_prime_UTR | 30.0% |
| ! | TGTTCGTGTTGCATTTTGTA+TGG | + | chr1_3:7963003-7963022 | None:intergenic | 35.0% |
| GGAAGATTTGAAGAATGGAA+AGG | + | chr1_3:7963082-7963101 | None:intergenic | 35.0% | |
| TGGTGTTTCGGAAATCAAAA+TGG | + | chr1_3:7963103-7963122 | None:intergenic | 35.0% | |
| ! | GAGCATCTACATCTATGTTT+TGG | + | chr1_3:7963123-7963142 | None:intergenic | 35.0% |
| ACAGAAGCTTGATTTCATCA+TGG | + | chr1_3:7963205-7963224 | None:intergenic | 35.0% | |
| ! | ATGAGTTTCTGTTGTGGTTT+TGG | - | chr1_3:7963340-7963359 | Msa0101350:three_prime_UTR | 35.0% |
| ! | TGAGTTTCTGTTGTGGTTTT+GGG | - | chr1_3:7963341-7963360 | Msa0101350:three_prime_UTR | 35.0% |
| ! | TTCAGCTTTATAGCATTGCT+TGG | + | chr1_3:7963525-7963544 | None:intergenic | 35.0% |
| GTGCTTCATAGTTTCTGTTT+AGG | - | chr1_3:7963619-7963638 | Msa0101350:intron | 35.0% | |
| TTTGCGGATGAATTATGCAA+TGG | - | chr1_3:7963764-7963783 | Msa0101350:intron | 35.0% | |
| TGTTGTTAAAAGTTGGAGTG+AGG | - | chr1_3:7964024-7964043 | Msa0101350:intron | 35.0% | |
| TGCTATGTCTGTAGAGAATT+TGG | - | chr1_3:7964109-7964128 | Msa0101350:intron | 35.0% | |
| AAACATCGGAGAAATCCTAA+CGG | - | chr1_3:7964136-7964155 | Msa0101350:intron | 35.0% | |
| AGACGCTTATTGTCTTCAAT+CGG | - | chr1_3:7964225-7964244 | Msa0101350:intron | 35.0% | |
| ! | TGGCCAACCTTTTATGTTAA+CGG | + | chr1_3:7964281-7964300 | None:intergenic | 35.0% |
| TGATCAAATGTTGAATGCTG+CGG | + | chr1_3:7964564-7964583 | None:intergenic | 35.0% | |
| GGTGTTTCCAGATAATTCTA+TGG | - | chr1_3:7964612-7964631 | Msa0101350:intron | 35.0% | |
| TCGTATGCCATAGAATTATC+TGG | + | chr1_3:7964622-7964641 | None:intergenic | 35.0% | |
| TAAGAGGGAACAAGGAAAAA+TGG | + | chr1_3:7964645-7964664 | None:intergenic | 35.0% | |
| !! | TCAGTGACAGAATCTAGTTT+TGG | - | chr1_3:7964708-7964727 | Msa0101350:intron | 35.0% |
| !!! | CAGTGACAGAATCTAGTTTT+GGG | - | chr1_3:7964709-7964728 | Msa0101350:intron | 35.0% |
| ACAGATACAGAGATTGATAG+AGG | + | chr1_3:7964901-7964920 | None:intergenic | 35.0% | |
| AGCTGTAATGTCAAAAACAG+TGG | - | chr1_3:7965131-7965150 | Msa0101350:intron | 35.0% | |
| GCTGTAATGTCAAAAACAGT+GGG | - | chr1_3:7965132-7965151 | Msa0101350:intron | 35.0% | |
| !!! | CTCAGTGAGTTTTGTTCAAA+TGG | - | chr1_3:7965258-7965277 | Msa0101350:three_prime_UTR | 35.0% |
| AAGAACATAAAGAGGTTGTG+AGG | - | chr1_3:7965505-7965524 | Msa0101350:three_prime_UTR | 35.0% | |
| AACCCAAGGTTTACATTGAA+AGG | - | chr1_3:7965543-7965562 | Msa0101350:three_prime_UTR | 35.0% | |
| CTCCTTTCAATGTAAACCTT+GGG | + | chr1_3:7965548-7965567 | None:intergenic | 35.0% | |
| TCTCCTTTCAATGTAAACCT+TGG | + | chr1_3:7965549-7965568 | None:intergenic | 35.0% | |
| ! | CACAATATGGTGTCAAATGT+GGG | + | chr1_3:7965707-7965726 | None:intergenic | 35.0% |
| ! | ACACAATATGGTGTCAAATG+TGG | + | chr1_3:7965708-7965727 | None:intergenic | 35.0% |
| GCATGTTTGGATACACAATA+TGG | + | chr1_3:7965720-7965739 | None:intergenic | 35.0% | |
| ! | GAGAGATATGTTGCTTATGA+TGG | - | chr1_3:7965755-7965774 | Msa0101350:three_prime_UTR | 35.0% |
| !! | GATGGACTAAAAAATGGGTT+CGG | - | chr1_3:7965773-7965792 | Msa0101350:three_prime_UTR | 35.0% |
| CTGTGGATTTCAATTAGTAG+CGG | - | chr1_3:7965873-7965892 | Msa0101350:three_prime_UTR | 35.0% | |
| !! | TTCAATTAGTAGCGGATTTG+CGG | - | chr1_3:7965881-7965900 | Msa0101350:three_prime_UTR | 35.0% |
| TTCACTGTGAAGCATGTATT+TGG | + | chr1_3:7965907-7965926 | None:intergenic | 35.0% | |
| AAATTAGGTACACCATGCAA+CGG | + | chr1_3:7966033-7966052 | None:intergenic | 35.0% | |
| TTCTGTGTAGTTTGAAAGTC+CGG | - | chr1_3:7966169-7966188 | Msa0101350:three_prime_UTR | 35.0% | |
| TGGTACGAAGAAAAAACAAC+CGG | + | chr1_3:7966191-7966210 | None:intergenic | 35.0% | |
| AGTTCAGATTTACATGGTTG+AGG | - | chr1_3:7966234-7966253 | Msa0101350:three_prime_UTR | 35.0% | |
| GTTCAGATTTACATGGTTGA+GGG | - | chr1_3:7966235-7966254 | Msa0101350:three_prime_UTR | 35.0% | |
| AGTGATCTTACAACGTATCT+TGG | - | chr1_3:7966345-7966364 | Msa0101350:CDS | 35.0% | |
| AATTTATCACGGCTTGCATT+TGG | - | chr1_3:7966563-7966582 | Msa0101350:intron | 35.0% | |
| GTGTTAAATTACTCGTGTCT+AGG | - | chr1_3:7966909-7966928 | Msa0101350:intron | 35.0% | |
| TAAATTACTCGTGTCTAGGT+TGG | - | chr1_3:7966913-7966932 | Msa0101350:intron | 35.0% | |
| !!! | TTTTGAAGGGGGTTTGTTAA+CGG | + | chr1_3:7966973-7966992 | None:intergenic | 35.0% |
| !! | TAGTATGCACGTTTTTGAAG+GGG | + | chr1_3:7966985-7967004 | None:intergenic | 35.0% |
| ! | CTAGTATGCACGTTTTTGAA+GGG | + | chr1_3:7966986-7967005 | None:intergenic | 35.0% |
| TGAAATTGGGGTGATTATTG+TGG | - | chr1_3:7967007-7967026 | Msa0101350:intron | 35.0% | |
| TTATTGTGGAATATGGTAGG+GGG | - | chr1_3:7967021-7967040 | Msa0101350:intron | 35.0% | |
| !! | CTTGGGTGTAGATTGATTTT+AGG | - | chr1_3:7967202-7967221 | Msa0101350:intron | 35.0% |
| !!! | GTGTAGATTGATTTTAGGAC+TGG | - | chr1_3:7967207-7967226 | Msa0101350:intron | 35.0% |
| CAGATCTTCTCTAAATTCCA+AGG | + | chr1_3:7967262-7967281 | None:intergenic | 35.0% | |
| TATAGAACAGTACAGTAGAG+CGG | + | chr1_3:7967398-7967417 | None:intergenic | 35.0% | |
| TGACCTGTAAAAGACTTTCT+TGG | - | chr1_3:7967536-7967555 | Msa0101350:five_prime_UTR | 35.0% | |
| ! | GAACCAAGAAAGTCTTTTAC+AGG | + | chr1_3:7967542-7967561 | None:intergenic | 35.0% |
| !!! | TACTGCAAGTGTGTCTTTTT+TGG | - | chr1_3:7967681-7967700 | Msa0101350:five_prime_UTR | 35.0% |
| !!! | ACTGCAAGTGTGTCTTTTTT+GGG | - | chr1_3:7967682-7967701 | Msa0101350:five_prime_UTR | 35.0% |
| GTGCACTGTAACGAAAAAAA+AGG | + | chr1_3:7967794-7967813 | None:intergenic | 35.0% | |
| ! | TTTTCGTTACAGTGCACATA+AGG | - | chr1_3:7967797-7967816 | Msa0101350:five_prime_UTR | 35.0% |
| ! | CACATAAGGTTTTCTGTGAA+TGG | - | chr1_3:7967811-7967830 | Msa0101350:five_prime_UTR | 35.0% |
| CTGATCATGAAACTCTTCAT+GGG | + | chr1_3:7968009-7968028 | None:intergenic | 35.0% | |
| TCTGATCATGAAACTCTTCA+TGG | + | chr1_3:7968010-7968029 | None:intergenic | 35.0% | |
| !!! | GGAGGTTTTGATTATAGTGA+CGG | - | chr1_3:7968074-7968093 | Msa0101350:intron | 35.0% |
| !!! | GTTTTGATTATAGTGACGGT+AGG | - | chr1_3:7968078-7968097 | Msa0101350:intron | 35.0% |
| ! | AGATTTTACTGGAATGGGTA+AGG | + | chr1_3:7968351-7968370 | None:intergenic | 35.0% |
| GTCATATCCAGTGTTTGTGT+CGG | - | chr1_3:7963597-7963616 | Msa0101350:three_prime_UTR | 40.0% | |
| GTTCTATTCAACAAGCACAG+AGG | - | chr1_3:7963796-7963815 | Msa0101350:intron | 40.0% | |
| TGGACTTGGAGAACTTCAAT+TGG | - | chr1_3:7963860-7963879 | Msa0101350:intron | 40.0% | |
| CTCAGATTCAGCAAGTGAAT+AGG | - | chr1_3:7963993-7964012 | Msa0101350:intron | 40.0% | |
| AATGAGCTGTCACCTACAAA+TGG | - | chr1_3:7964047-7964066 | Msa0101350:intron | 40.0% | |
| ATGAGCTGTCACCTACAAAT+GGG | - | chr1_3:7964048-7964067 | Msa0101350:intron | 40.0% | |
| CAGACATAGCAGAAAATCCT+TGG | + | chr1_3:7964100-7964119 | None:intergenic | 40.0% | |
| ATGTCTGTAGAGAATTTGGC+TGG | - | chr1_3:7964113-7964132 | Msa0101350:intron | 40.0% | |
| GAGAATTTGGCTGGAAACAT+CGG | - | chr1_3:7964122-7964141 | Msa0101350:intron | 40.0% | |
| AACATCGGAGAAATCCTAAC+GGG | - | chr1_3:7964137-7964156 | Msa0101350:intron | 40.0% | |
| AGAAATCCTAACGGGAATGA+AGG | - | chr1_3:7964145-7964164 | Msa0101350:intron | 40.0% | |
| GTCAAGCCCGTTAACATAAA+AGG | - | chr1_3:7964271-7964290 | Msa0101350:intron | 40.0% | |
| AGCCCGTTAACATAAAAGGT+TGG | - | chr1_3:7964275-7964294 | Msa0101350:intron | 40.0% | |
| ! | GGCCAACCTTTTATGTTAAC+GGG | + | chr1_3:7964280-7964299 | None:intergenic | 40.0% |
| GCTATTATAGCATGCTGAGA+TGG | + | chr1_3:7964301-7964320 | None:intergenic | 40.0% | |
| !! | TTAGGTACTGATCTGAGTTG+TGG | - | chr1_3:7964398-7964417 | Msa0101350:intron | 40.0% |
| AAGGAACAACGAGAGTAAGA+GGG | + | chr1_3:7964660-7964679 | None:intergenic | 40.0% | |
| TAAGGAACAACGAGAGTAAG+AGG | + | chr1_3:7964661-7964680 | None:intergenic | 40.0% | |
| TGTCACTGACATATGCAAAG+TGG | + | chr1_3:7964697-7964716 | None:intergenic | 40.0% | |
| GGAAAGAAGCAGAAAGCTTT+CGG | + | chr1_3:7964958-7964977 | None:intergenic | 40.0% | |
| CAAGAGTTTGAACTACCTTG+TGG | + | chr1_3:7965217-7965236 | None:intergenic | 40.0% | |
| CAAACTCTTGAGAGAGTCAT+CGG | - | chr1_3:7965227-7965246 | Msa0101350:three_prime_UTR | 40.0% | |
| AAACTCTTGAGAGAGTCATC+GGG | - | chr1_3:7965228-7965247 | Msa0101350:three_prime_UTR | 40.0% | |
| AACATAAAGAGGTTGTGAGG+AGG | - | chr1_3:7965508-7965527 | Msa0101350:three_prime_UTR | 40.0% | |
| ! | CTTGTAACTTGTAAGGCAAG+GGG | + | chr1_3:7965604-7965623 | None:intergenic | 40.0% |
| ! | GCTTGTAACTTGTAAGGCAA+GGG | + | chr1_3:7965605-7965624 | None:intergenic | 40.0% |
| TTGCCTTACAAGTTACAAGC+CGG | - | chr1_3:7965605-7965624 | Msa0101350:three_prime_UTR | 40.0% | |
| !! | AAACCGGCTTGTAACTTGTA+AGG | + | chr1_3:7965611-7965630 | None:intergenic | 40.0% |
| !! | AGTTACAAGCCGGTTTTGTA+TGG | - | chr1_3:7965615-7965634 | Msa0101350:three_prime_UTR | 40.0% |
| GGAAGGAGTTCAGATTTACA+TGG | - | chr1_3:7966228-7966247 | Msa0101350:three_prime_UTR | 40.0% | |
| !! | AGCTTTGAACAGCATCAAAG+TGG | - | chr1_3:7966274-7966293 | Msa0101350:three_prime_UTR | 40.0% |
| CAAAGTGGTGTAGATGGAAA+TGG | - | chr1_3:7966289-7966308 | Msa0101350:three_prime_UTR | 40.0% | |
| ! | AATGGTTTGCCTGTTGAATC+TGG | - | chr1_3:7966307-7966326 | Msa0101350:three_prime_UTR | 40.0% |
| ! | ATGGTTTGCCTGTTGAATCT+GGG | - | chr1_3:7966308-7966327 | Msa0101350:three_prime_UTR | 40.0% |
| AGTGTGTGACAATACTTGTG+TGG | + | chr1_3:7966430-7966449 | None:intergenic | 40.0% | |
| AGATGGTAAGTGGTAACTAG+TGG | - | chr1_3:7966647-7966666 | Msa0101350:intron | 40.0% | |
| ATAAATGCCAAGCAACTGCT+AGG | - | chr1_3:7966752-7966771 | Msa0101350:intron | 40.0% | |
| TAAATGCCAAGCAACTGCTA+GGG | - | chr1_3:7966753-7966772 | Msa0101350:intron | 40.0% | |
| !! | AGTATGCACGTTTTTGAAGG+GGG | + | chr1_3:7966984-7967003 | None:intergenic | 40.0% |
| ! | CCTAGTATGCACGTTTTTGA+AGG | + | chr1_3:7966987-7967006 | None:intergenic | 40.0% |
| CCTTCAAAAACGTGCATACT+AGG | - | chr1_3:7966984-7967003 | Msa0101350:intron | 40.0% | |
| ACGTGCATACTAGGTGAAAT+TGG | - | chr1_3:7966993-7967012 | Msa0101350:intron | 40.0% | |
| CGTGCATACTAGGTGAAATT+GGG | - | chr1_3:7966994-7967013 | Msa0101350:intron | 40.0% | |
| GTGCATACTAGGTGAAATTG+GGG | - | chr1_3:7966995-7967014 | Msa0101350:intron | 40.0% | |
| GGGGTGATTATTGTGGAATA+TGG | - | chr1_3:7967014-7967033 | Msa0101350:intron | 40.0% | |
| TAGGACAACTGTCAATTGCT+GGG | + | chr1_3:7967074-7967093 | None:intergenic | 40.0% | |
| TGTCCTAGCACTTAGTTAGT+TGG | - | chr1_3:7967087-7967106 | Msa0101350:intron | 40.0% | |
| AATAGAATCAGGGACAAGCA+AGG | - | chr1_3:7967144-7967163 | Msa0101350:intron | 40.0% | |
| ATAGAATCAGGGACAAGCAA+GGG | - | chr1_3:7967145-7967164 | Msa0101350:intron | 40.0% | |
| !!! | GATTTTAGGACTGGAGTAAG+TGG | - | chr1_3:7967216-7967235 | Msa0101350:intron | 40.0% |
| TCAAGAAGATTGCAGAACCT+AGG | + | chr1_3:7967311-7967330 | None:intergenic | 40.0% | |
| TGATGGTTACTCACATCCTT+CGG | + | chr1_3:7967347-7967366 | None:intergenic | 40.0% | |
| ACTTGCAGTACTAGTATCCA+CGG | + | chr1_3:7967671-7967690 | None:intergenic | 40.0% | |
| CTATAATCAAAACCTCCCTG+TGG | + | chr1_3:7968071-7968090 | None:intergenic | 40.0% | |
| TGGAAAATCTACGCAGAATG+AGG | - | chr1_3:7968376-7968395 | Msa0101350:intron | 40.0% | |
| ATCTGAGGAACTCCCTAAAA+TGG | - | chr1_3:7968454-7968473 | Msa0101350:five_prime_UTR | 40.0% | |
| !! | TTGTAGTCAGCGCCATTTTA+GGG | + | chr1_3:7968469-7968488 | None:intergenic | 40.0% |
| !! | TTTGTAGTCAGCGCCATTTT+AGG | + | chr1_3:7968470-7968489 | None:intergenic | 40.0% |
| ATATGATTATCAACAGCCCC+AGG | - | chr1_3:7968541-7968560 | Msa0101350:five_prime_UTR | 40.0% | |
| TGTATAATCTTTGCGCTCCT+GGG | + | chr1_3:7968561-7968580 | None:intergenic | 40.0% | |
| TTGTATAATCTTTGCGCTCC+TGG | + | chr1_3:7968562-7968581 | None:intergenic | 40.0% | |
| ! | AGGAGCGCAAAGATTATACA+AGG | - | chr1_3:7968561-7968580 | Msa0101350:five_prime_UTR | 40.0% |
| GCGATGGAGATTGTGTTAAG+AGG | + | chr1_3:7963026-7963045 | None:intergenic | 45.0% | |
| CATCATCACCATGTAGTGAG+TGG | + | chr1_3:7963050-7963069 | None:intergenic | 45.0% | |
| TGCATCAACACACGTGACAT+CGG | + | chr1_3:7963572-7963591 | None:intergenic | 45.0% | |
| AGGCATCACTTGGTTGTGAT+TGG | - | chr1_3:7963816-7963835 | Msa0101350:intron | 45.0% | |
| ! | CAGTAATTGGTGTGCCATTG+CGG | - | chr1_3:7963891-7963910 | Msa0101350:intron | 45.0% |
| ! | AGTAATTGGTGTGCCATTGC+GGG | - | chr1_3:7963892-7963911 | Msa0101350:intron | 45.0% |
| ATCGACACAAGCCCATTTGT+AGG | + | chr1_3:7964062-7964081 | None:intergenic | 45.0% | |
| ! | GCTTGTGTCGATGTGAAAGA+CGG | - | chr1_3:7964070-7964089 | Msa0101350:intron | 45.0% |
| ATGTGAAAGACGGAATGCCA+AGG | - | chr1_3:7964080-7964099 | Msa0101350:intron | 45.0% | |
| AACGAGAGTAAGAGGGAACA+AGG | + | chr1_3:7964653-7964672 | None:intergenic | 45.0% | |
| !!! | TCTAGTTTTGGGCAAAGCCT+TGG | - | chr1_3:7964720-7964739 | Msa0101350:intron | 45.0% |
| !!! | CTAGTTTTGGGCAAAGCCTT+GGG | - | chr1_3:7964721-7964740 | Msa0101350:intron | 45.0% |
| ! | GCTTCAGTGGGCTTTAGTTT+GGG | - | chr1_3:7964743-7964762 | Msa0101350:intron | 45.0% |
| ACTAAAAAGGGATCCTCGTG+AGG | - | chr1_3:7965172-7965191 | Msa0101350:intron | 45.0% | |
| ! | AATCGATTCCAGTCGAATCG+AGG | - | chr1_3:7965449-7965468 | Msa0101350:three_prime_UTR | 45.0% |
| ATTCCAGTCGAATCGAGGTT+TGG | - | chr1_3:7965454-7965473 | Msa0101350:three_prime_UTR | 45.0% | |
| ! | AGGTTGTGAGGAGGTGTATT+GGG | - | chr1_3:7965517-7965536 | Msa0101350:three_prime_UTR | 45.0% |
| GGTGTATTGGGAAAAACCCA+AGG | - | chr1_3:7965529-7965548 | Msa0101350:three_prime_UTR | 45.0% | |
| ! | GGCTTGTAACTTGTAAGGCA+AGG | + | chr1_3:7965606-7965625 | None:intergenic | 45.0% |
| AAATCCACAGTATGCACGTG+TGG | + | chr1_3:7965863-7965882 | None:intergenic | 45.0% | |
| AGATAGGAACTAACCTGCGA+TGG | + | chr1_3:7966110-7966129 | None:intergenic | 45.0% | |
| TCGTACCAGATTATTGACGC+TGG | - | chr1_3:7966203-7966222 | Msa0101350:three_prime_UTR | 45.0% | |
| TACCAGATTATTGACGCTGG+TGG | - | chr1_3:7966206-7966225 | Msa0101350:three_prime_UTR | 45.0% | |
| ACCAGATTATTGACGCTGGT+GGG | - | chr1_3:7966207-7966226 | Msa0101350:three_prime_UTR | 45.0% | |
| CAGCATCAAAGTGGTGTAGA+TGG | - | chr1_3:7966283-7966302 | Msa0101350:three_prime_UTR | 45.0% | |
| TTGTAAGATCACTTTGCGCC+AGG | + | chr1_3:7966338-7966357 | None:intergenic | 45.0% | |
| TCTTGTCAAAATGCGGTCAC+AGG | - | chr1_3:7966384-7966403 | Msa0101350:CDS | 45.0% | |
| GTGTGGCTTGAGATTGTGTT+CGG | + | chr1_3:7966413-7966432 | None:intergenic | 45.0% | |
| GTCAATTGCTGGGTTGTTAC+TGG | + | chr1_3:7967064-7967083 | None:intergenic | 45.0% | |
| CTAGGACAACTGTCAATTGC+TGG | + | chr1_3:7967075-7967094 | None:intergenic | 45.0% | |
| GCTCCAACTAACTAAGTGCT+AGG | + | chr1_3:7967093-7967112 | None:intergenic | 45.0% | |
| GTGGGAGCTCAATAGAATCA+GGG | - | chr1_3:7967134-7967153 | Msa0101350:intron | 45.0% | |
| TTAGGACTGGAGTAAGTGGA+AGG | - | chr1_3:7967220-7967239 | Msa0101350:intron | 45.0% | |
| TAGGACTGGAGTAAGTGGAA+GGG | - | chr1_3:7967221-7967240 | Msa0101350:intron | 45.0% | |
| !! | TTCCAAGGACTCTAGAATCC+AGG | + | chr1_3:7967247-7967266 | None:intergenic | 45.0% |
| TGATTCAGAGTTCAGACCGA+AGG | - | chr1_3:7967328-7967347 | Msa0101350:CDS | 45.0% | |
| TCATGAAACTCTTCATGGGC+AGG | + | chr1_3:7968005-7968024 | None:intergenic | 45.0% | |
| GATCAGACATTTGCTCCACA+TGG | - | chr1_3:7968023-7968042 | Msa0101350:intron | 45.0% | |
| GTCTGATCATGAAGTCCATG+TGG | + | chr1_3:7968041-7968060 | None:intergenic | 45.0% | |
| TGATCAGACATTTGCTCCAC+AGG | - | chr1_3:7968022-7968041 | Msa0101350:intron | 45.0% | |
| GATCAGACATTTGCTCCACA+GGG | - | chr1_3:7968023-7968042 | Msa0101350:intron | 45.0% | |
| ACTATCACTTCCACTAGCAC+TGG | + | chr1_3:7968114-7968133 | None:intergenic | 45.0% | |
| GAAAGTAACAGTAGCGACAG+TGG | - | chr1_3:7968134-7968153 | Msa0101350:intron | 45.0% | |
| AGCAGAAGTAGAAGTTCCGA+TGG | - | chr1_3:7968182-7968201 | Msa0101350:intron | 45.0% | |
| GTAGAAGTTCCGATGGATCA+TGG | - | chr1_3:7968189-7968208 | Msa0101350:intron | 45.0% | |
| ACTCTCACTCCATGATCCAT+CGG | + | chr1_3:7968201-7968220 | None:intergenic | 45.0% | |
| TGGAGTGAGAGTAGTAGTGA+CGG | - | chr1_3:7968209-7968228 | Msa0101350:intron | 45.0% | |
| CAGATTTCTGCTTTGTGCTC+TGG | + | chr1_3:7968314-7968333 | None:intergenic | 45.0% | |
| !! | GAATGAGGTTGATGAGAAGC+AGG | - | chr1_3:7968391-7968410 | Msa0101350:intron | 45.0% |
| GTATAATCTTTGCGCTCCTG+GGG | + | chr1_3:7968560-7968579 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTAATTTACATT+AGG | + | chr1_3:7965422-7965441 | None:intergenic | 5.0% |
| !! | TGAAGCACCGACACAAACAC+TGG | + | chr1_3:7963607-7963626 | None:intergenic | 50.0% |
| !! | ACAAGCACAGAGGCATCACT+TGG | - | chr1_3:7963806-7963825 | Msa0101350:intron | 50.0% |
| ! | GTAATTGGTGTGCCATTGCG+GGG | - | chr1_3:7963893-7963912 | Msa0101350:intron | 50.0% |
| TCTGCAAAAGATCCCCGCAA+TGG | + | chr1_3:7963908-7963927 | None:intergenic | 50.0% | |
| ! | ATTGCGGGGATCTTTTGCAG+AGG | - | chr1_3:7963907-7963926 | Msa0101350:intron | 50.0% |
| GCATGTTGAGAGCAAGCAGA+TGG | - | chr1_3:7963931-7963950 | Msa0101350:intron | 50.0% | |
| TGTTGAGAGCAAGCAGATGG+TGG | - | chr1_3:7963934-7963953 | Msa0101350:intron | 50.0% | |
| CAGCTACCTTCATTCCCGTT+AGG | + | chr1_3:7964154-7964173 | None:intergenic | 50.0% | |
| ! | GGCTTCAGTGGGCTTTAGTT+TGG | - | chr1_3:7964742-7964761 | Msa0101350:intron | 50.0% |
| GTGCGCAGTTAAGGTGTATC+AGG | + | chr1_3:7965045-7965064 | None:intergenic | 50.0% | |
| ! | GTGGACTGCCTGAATGAACT+CGG | + | chr1_3:7965198-7965217 | None:intergenic | 50.0% |
| GTTCATTCAGGCAGTCCACA+AGG | - | chr1_3:7965199-7965218 | Msa0101350:three_prime_UTR | 50.0% | |
| ! | ACACCAAACCTCGATTCGAC+TGG | + | chr1_3:7965460-7965479 | None:intergenic | 50.0% |
| ! | GAGGTTGTGAGGAGGTGTAT+TGG | - | chr1_3:7965516-7965535 | Msa0101350:three_prime_UTR | 50.0% |
| TTCACCACACGTGCATACTG+TGG | - | chr1_3:7965856-7965875 | Msa0101350:three_prime_UTR | 50.0% | |
| TCCCACCAGCGTCAATAATC+TGG | + | chr1_3:7966211-7966230 | None:intergenic | 50.0% | |
| GATTATTGACGCTGGTGGGA+AGG | - | chr1_3:7966211-7966230 | Msa0101350:three_prime_UTR | 50.0% | |
| TCATTGCCCTAGCAGTTGCT+TGG | + | chr1_3:7966762-7966781 | None:intergenic | 50.0% | |
| GGTGGGAGCTCAATAGAATC+AGG | - | chr1_3:7967133-7967152 | Msa0101350:intron | 50.0% | |
| TCAGGGACAAGCAAGGGAAA+TGG | - | chr1_3:7967151-7967170 | Msa0101350:intron | 50.0% | |
| GTACAGTAGAGCGGAGCAAA+GGG | + | chr1_3:7967389-7967408 | None:intergenic | 50.0% | |
| AGTACAGTAGAGCGGAGCAA+AGG | + | chr1_3:7967390-7967409 | None:intergenic | 50.0% | |
| ACTCTTCATGGGCAGGTGTT+AGG | + | chr1_3:7967998-7968017 | None:intergenic | 50.0% | |
| GATTATAGTGACGGTAGGGC+AGG | - | chr1_3:7968083-7968102 | Msa0101350:intron | 50.0% | |
| TGATACCTCTTCCATCAGCG+AGG | - | chr1_3:7968238-7968257 | Msa0101350:intron | 50.0% | |
| GATACCTCTTCCATCAGCGA+GGG | - | chr1_3:7968239-7968258 | Msa0101350:intron | 50.0% | |
| ! | TGAGAGCAAGCAGATGGTGG+TGG | - | chr1_3:7963937-7963956 | Msa0101350:intron | 55.0% |
| GCAAAGCCTTGGGCTTCAGT+GGG | - | chr1_3:7964731-7964750 | Msa0101350:intron | 55.0% | |
| CTAAAGCCCACTGAAGCCCA+AGG | + | chr1_3:7964740-7964759 | None:intergenic | 55.0% | |
| TGAATGAACTCGGCCTCACG+AGG | + | chr1_3:7965188-7965207 | None:intergenic | 55.0% | |
| TCGTGAGGCCGAGTTCATTC+AGG | - | chr1_3:7965187-7965206 | Msa0101350:three_prime_UTR | 55.0% | |
| CCCACGTGCGGTAAAGAGAA+GGG | + | chr1_3:7965799-7965818 | None:intergenic | 55.0% | |
| CCCTTCTCTTTACCGCACGT+GGG | - | chr1_3:7965796-7965815 | Msa0101350:three_prime_UTR | 55.0% | |
| ACCCACGTGCGGTAAAGAGA+AGG | + | chr1_3:7965800-7965819 | None:intergenic | 55.0% | |
| TTCTCTTTACCGCACGTGGG+TGG | - | chr1_3:7965799-7965818 | Msa0101350:three_prime_UTR | 55.0% | |
| CAGGCACACCCAGATTCAAC+AGG | + | chr1_3:7966319-7966338 | None:intergenic | 55.0% | |
| CTGTTGAATCTGGGTGTGCC+TGG | - | chr1_3:7966317-7966336 | Msa0101350:three_prime_UTR | 55.0% | |
| !! | GGCCTGGATTCTAGAGTCCT+TGG | - | chr1_3:7967242-7967261 | Msa0101350:intron | 55.0% |
| CAGACATTTGCTCCACAGGG+AGG | - | chr1_3:7968056-7968075 | Msa0101350:intron | 55.0% | |
| AGCGACAGTGGAAGTGACAG+TGG | - | chr1_3:7968146-7968165 | Msa0101350:intron | 55.0% | |
| CAATCCCTCGCTGATGGAAG+AGG | + | chr1_3:7968246-7968265 | None:intergenic | 55.0% | |
| CTCTTCCATCAGCGAGGGAT+TGG | - | chr1_3:7968244-7968263 | Msa0101350:intron | 55.0% | |
| TTCCATCAGCGAGGGATTGG+AGG | - | chr1_3:7968247-7968266 | Msa0101350:intron | 55.0% | |
| TCCATCAGCGAGGGATTGGA+GGG | - | chr1_3:7968248-7968267 | Msa0101350:intron | 55.0% | |
| !! | GGGATTGGAGGGTACTGATG+AGG | - | chr1_3:7968259-7968278 | Msa0101350:intron | 55.0% |
| CCATGTAGTGAGTGGCGCGA+TGG | + | chr1_3:7963042-7963061 | None:intergenic | 60.0% | |
| CCATCGCGCCACTCACTACA+TGG | - | chr1_3:7963039-7963058 | Msa0101350:three_prime_UTR | 60.0% | |
| GGCAAAGCCTTGGGCTTCAG+TGG | - | chr1_3:7964730-7964749 | Msa0101350:intron | 60.0% | |
| GCCCTTCTCTTTACCGCACG+TGG | - | chr1_3:7965795-7965814 | Msa0101350:three_prime_UTR | 60.0% | |
| TCTTTACCGCACGTGGGTGG+AGG | - | chr1_3:7965802-7965821 | Msa0101350:three_prime_UTR | 60.0% | |
| !! | GAGGTTGGTGGCCCCAAAAG+AGG | - | chr1_3:7965821-7965840 | Msa0101350:three_prime_UTR | 60.0% |
| CTGGAGTAAGTGGAAGGGCC+TGG | - | chr1_3:7967226-7967245 | Msa0101350:intron | 60.0% | |
| AGCGGAGCAAAGGGCCACAA+TGG | + | chr1_3:7967380-7967399 | None:intergenic | 60.0% | |
| ACCCTCCAATCCCTCGCTGA+TGG | + | chr1_3:7968252-7968271 | None:intergenic | 60.0% | |
| TACCGCACGTGGGTGGAGGT+TGG | - | chr1_3:7965806-7965825 | Msa0101350:three_prime_UTR | 65.0% | |
| CACCAACCTCCACCCACGTG+CGG | + | chr1_3:7965811-7965830 | None:intergenic | 65.0% | |
| GCAGGCAGCTCCAGTGCTAG+TGG | - | chr1_3:7968101-7968120 | Msa0101350:intron | 65.0% | |
| CGCACGTGGGTGGAGGTTGG+TGG | - | chr1_3:7965809-7965828 | Msa0101350:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7962988 | 7968620 | 7962988 | ID=Msa0101350;Name=Msa0101350 |
| chr1_3 | mRNA | 7962988 | 7968620 | 7962988 | ID=Msa0101350-mRNA-1;Parent=Msa0101350;Name=Msa0101350-mRNA-1;_AED=0.24;_eAED=0.24;_QI=550|0.5|0.8|1|0.25|0|5|1816|120 |
| chr1_3 | exon | 7962988 | 7963634 | 7962988 | ID=Msa0101350-mRNA-1:exon:3163;Parent=Msa0101350-mRNA-1 |
| chr1_3 | exon | 7965174 | 7966475 | 7965174 | ID=Msa0101350-mRNA-1:exon:3162;Parent=Msa0101350-mRNA-1 |
| chr1_3 | exon | 7967176 | 7967206 | 7967176 | ID=Msa0101350-mRNA-1:exon:3161;Parent=Msa0101350-mRNA-1 |
| chr1_3 | exon | 7967316 | 7967845 | 7967316 | ID=Msa0101350-mRNA-1:exon:3160;Parent=Msa0101350-mRNA-1 |
| chr1_3 | exon | 7968402 | 7968620 | 7968402 | ID=Msa0101350-mRNA-1:exon:3159;Parent=Msa0101350-mRNA-1 |
| chr1_3 | five_prime_UTR | 7968402 | 7968620 | 7968402 | ID=Msa0101350-mRNA-1:five_prime_utr;Parent=Msa0101350-mRNA-1 |
| chr1_3 | five_prime_UTR | 7967515 | 7967845 | 7967515 | ID=Msa0101350-mRNA-1:five_prime_utr;Parent=Msa0101350-mRNA-1 |
| chr1_3 | CDS | 7967316 | 7967514 | 7967316 | ID=Msa0101350-mRNA-1:cds;Parent=Msa0101350-mRNA-1 |
| chr1_3 | CDS | 7967176 | 7967206 | 7967176 | ID=Msa0101350-mRNA-1:cds;Parent=Msa0101350-mRNA-1 |
| chr1_3 | CDS | 7966343 | 7966475 | 7966343 | ID=Msa0101350-mRNA-1:cds;Parent=Msa0101350-mRNA-1 |
| chr1_3 | three_prime_UTR | 7965174 | 7966342 | 7965174 | ID=Msa0101350-mRNA-1:three_prime_utr;Parent=Msa0101350-mRNA-1 |
| chr1_3 | three_prime_UTR | 7962988 | 7963634 | 7962988 | ID=Msa0101350-mRNA-1:three_prime_utr;Parent=Msa0101350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
