AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792510 MtrunA17_Chr7g0260731 95.307 277 2 1 91 367 1 266 0.0 539
Msa0792510 MtrunA17_Chr1g0187901 69.231 403 100 8 1 392 1 390 5.51e-169 478
Msa0792510 MtrunA17_Chr1g0165841 55.733 375 133 6 25 392 19 367 1.12e-133 387
Msa0792510 MtrunA17_Chr8g0380621 43.627 408 195 7 1 392 34 422 5.02e-104 313
Msa0792510 MtrunA17_Chr2g0333971 44.254 409 165 10 17 379 43 434 2.50e-97 297
Msa0792510 MtrunA17_Chr1g0165861 59.825 229 76 2 164 392 3 215 2.50e-93 279
Msa0792510 MtrunA17_Chr5g0393831 41.667 432 174 11 12 384 23 435 2.33e-92 284
Msa0792510 MtrunA17_Chr5g0419611 37.065 402 189 9 17 387 32 400 6.50e-77 243
Msa0792510 MtrunA17_Chr8g0384941 37.965 403 205 6 18 386 28 419 3.26e-76 242
Msa0792510 MtrunA17_Chr1g0206981 35.934 423 207 11 18 389 14 423 2.19e-72 232
Msa0792510 MtrunA17_Chr7g0260721 97.368 76 2 0 1 76 1 76 1.15e-44 149
Msa0792510 MtrunA17_Chr1g0187911 49.701 167 33 3 199 365 37 152 2.11e-43 148
Msa0792510 MtrunA17_Chr8g0385861 34.884 215 111 3 17 202 26 240 1.40e-35 130
Msa0792510 MtrunA17_Chr1g0165871 50.000 126 48 2 18 128 6 131 1.75e-28 109
Msa0792510 MtrunA17_Chr2g0307921 61.842 76 22 1 17 85 9 84 1.11e-20 86.3
Msa0792510 MtrunA17_Chr8g0385851 36.792 106 67 0 285 390 5 110 5.76e-18 79.0
Msa0792510 MtrunA17_Chr2g0307931 63.492 63 16 1 30 85 20 82 1.16e-16 75.1
Msa0792510 MtrunA17_Chr1g0176551 48.864 88 44 1 135 222 57 143 8.99e-16 77.0
Msa0792510 MtrunA17_Chr2g0320641 23.140 363 218 7 32 383 123 435 3.87e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792510 AT5G64560.1 69.767 387 94 6 18 392 19 394 3.66e-165 468
Msa0792510 AT5G09690.2 62.916 391 116 5 12 392 26 397 1.37e-163 464
Msa0792510 AT5G09690.1 62.916 391 116 5 12 392 15 386 1.78e-163 464
Msa0792510 AT5G64560.2 70.278 360 84 6 18 365 19 367 5.75e-153 437
Msa0792510 AT5G09690.12 63.462 364 104 5 12 365 26 370 3.00e-151 432
Msa0792510 AT5G09690.4 57.841 389 124 4 12 392 15 371 5.24e-143 411
Msa0792510 AT5G09690.9 62.577 326 93 5 12 327 15 321 8.26e-125 363
Msa0792510 AT5G09690.13 62.848 323 91 5 12 324 26 329 1.24e-124 363
Msa0792510 AT5G09690.7 62.654 324 92 5 12 325 15 319 1.25e-124 363
Msa0792510 AT5G09690.8 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa0792510 AT5G09690.11 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa0792510 AT5G09690.3 62.848 323 91 5 12 324 15 318 2.04e-124 362
Msa0792510 AT1G16010.3 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa0792510 AT1G16010.1 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa0792510 AT1G16010.2 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa0792510 AT3G58970.1 43.970 398 184 8 17 392 56 436 4.66e-101 306
Msa0792510 AT5G09690.5 61.091 275 89 4 12 276 15 281 1.07e-98 295
Msa0792510 AT5G09690.14 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa0792510 AT5G09690.10 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa0792510 AT5G09690.6 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa0792510 AT1G80900.2 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa0792510 AT1G80900.1 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa0792510 AT5G09720.1 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa0792510 AT5G09720.2 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa0792510 AT3G19640.1 38.274 452 179 11 25 390 46 483 3.69e-84 265
Msa0792510 AT2G03620.1 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa0792510 AT2G03620.2 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa0792510 AT4G28580.1 35.092 379 206 8 26 390 55 407 1.69e-67 219

Find 92 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACGCATATGTATTTAAA+TGG 0.188180 5_3:+3763591 Msa0792510:CDS
CTTTAGGTGGTGATTCTTAC+TGG 0.220365 5_3:+3763741 Msa0792510:intron
TCATTGGTAGCTGCAATATT+TGG 0.220816 5_3:+3763539 Msa0792510:CDS
TGACCTTCTTTCCATGTATA+TGG 0.239696 5_3:-3763572 None:intergenic
AAAAGATTTGATTACCTTAG+AGG 0.251185 5_3:-3761603 None:intergenic
GGCAATAGCTTGATTTATAA+TGG 0.283237 5_3:+3764113 Msa0792510:three_prime_UTR
TCATATCCTTCCACCATTCT+TGG 0.294400 5_3:+3760714 Msa0792510:CDS
ACAGATCAGCAGTCGTAATT+TGG 0.309187 5_3:+3762192 Msa0792510:intron
TCCATCAATTTGTATGAAAT+AGG 0.322286 5_3:-3763005 None:intergenic
CTCAAAGATCTTCTATATCT+TGG 0.328184 5_3:-3764043 None:intergenic
TCCATTTGAGTTTCGAGCTT+TGG 0.329463 5_3:+3761493 Msa0792510:CDS
TCACCGAAATCAACTGATTC+AGG 0.331607 5_3:+3763390 Msa0792510:CDS
GACTGCTGCTTATCCAGCTT+TGG 0.351888 5_3:+3761571 Msa0792510:CDS
ATACCTGAATCAGTTGATTT+CGG 0.353513 5_3:-3763393 None:intergenic
TGCAAGAGATCTTCGAATAA+TGG 0.360463 5_3:+3760680 Msa0792510:CDS
CCACTCAAGGTAAGTGTTGC+TGG 0.361150 5_3:+3761093 Msa0792510:CDS
GCCTATTTCATACAAATTGA+TGG 0.369964 5_3:+3763004 Msa0792510:CDS
CACATAACTCTTCTTCTACT+TGG 0.378469 5_3:-3761122 None:intergenic
GGTGAAGGTGGAGAAGAAAA+TGG 0.378750 5_3:+3761153 Msa0792510:CDS
AGCAATACTTGCAAAATAAC+AGG 0.385725 5_3:+3764070 Msa0792510:three_prime_UTR
GACTTTCTCTCTTCCAAGAA+TGG 0.389828 5_3:-3760727 None:intergenic
GCTCGACGCAAAGGTCTTGT+TGG 0.403901 5_3:+3763804 Msa0792510:CDS
TTTGGATGAACTAACCTCTA+AGG 0.407168 5_3:+3761589 Msa0792510:CDS
CTAGAGCTATTCCTAAGTTC+CGG 0.407596 5_3:+3763494 Msa0792510:CDS
TAGAGCTATTCCTAAGTTCC+GGG 0.413834 5_3:+3763495 Msa0792510:CDS
AAACTACTATTTCAAGAAGC+TGG 0.423267 5_3:+3760580 Msa0792510:CDS
TCGAGCTTTGGAAGTTGTAT+TGG 0.424295 5_3:+3761505 Msa0792510:CDS
GAAGATCGATGCACCTTGTT+GGG 0.427911 5_3:+3763841 Msa0792510:three_prime_UTR
TAAGTATGCTATTATGCGTT+TGG 0.428253 5_3:+3760647 Msa0792510:CDS
GGAAGTGCAGCAACACTTCA+AGG 0.431204 5_3:+3762694 Msa0792510:CDS
CTGTATGTTAATGTAATCTT+CGG 0.434923 5_3:-3763154 None:intergenic
TCCAAAGCTCGAAACTCAAA+TGG 0.437377 5_3:-3761494 None:intergenic
ATTCTTACTGGAATGGTTTG+TGG 0.437976 5_3:+3763753 Msa0792510:CDS
TTGTTTATCAATATATTCAT+TGG 0.442759 5_3:+3763523 Msa0792510:CDS
CTTCGTAGCTCTTCAACAAC+AGG 0.444279 5_3:-3761063 None:intergenic
GGTGGTGATTCTTACTGGAA+TGG 0.450291 5_3:+3763746 Msa0792510:intron
ATATGGACTGTGATGCCAAT+TGG 0.456144 5_3:-3762641 None:intergenic
GGAGTTGCAATCAATTTATG+TGG 0.463588 5_3:+3764091 Msa0792510:three_prime_UTR
CTCGACGCAAAGGTCTTGTT+GGG 0.467590 5_3:+3763805 Msa0792510:CDS
TCACGCATATGTATTTAAAT+GGG 0.487791 5_3:+3763592 Msa0792510:CDS
GTATGAACATTCCATATACA+TGG 0.489016 5_3:+3763561 Msa0792510:CDS
AGCTTTGGAAGTTGTATTGG+AGG 0.492401 5_3:+3761508 Msa0792510:CDS
GTAGCTCTGACGGTCCCAAT+TGG 0.492514 5_3:+3762626 Msa0792510:CDS
AACAAACAGTCCCGGAACTT+AGG 0.497975 5_3:-3763505 None:intergenic
TATGGACTGTGATGCCAATT+GGG 0.507694 5_3:-3762640 None:intergenic
TGAAGATCGATGCACCTTGT+TGG 0.509800 5_3:+3763840 Msa0792510:three_prime_UTR
ACTTTATTTATCAAGAAAGA+TGG 0.511194 5_3:+3762582 Msa0792510:CDS
CGAAGATTACATTAACATAC+AGG 0.512088 5_3:+3763155 Msa0792510:CDS
ATTCCATATACATGGAAAGA+AGG 0.515189 5_3:+3763569 Msa0792510:CDS
GAGGTTAGTTCATCCAAAGC+TGG 0.516706 5_3:-3761584 None:intergenic
GGCACAACATCATCATCCAT+TGG 0.518806 5_3:-3761042 None:intergenic
GAAGAGTTATGTGTTCAAGA+AGG 0.534356 5_3:+3761132 Msa0792510:CDS
ATATCGTATGCTCGACGCAA+AGG 0.536903 5_3:+3763795 Msa0792510:CDS
GAAGTGCAGCAACACTTCAA+GGG 0.539485 5_3:+3762695 Msa0792510:CDS
GCACAACATCATCATCCATT+GGG 0.541642 5_3:-3761041 None:intergenic
GTCAGAGCTACTTGAGGGAG+AGG 0.543567 5_3:-3762614 None:intergenic
GGACCGTCAGAGCTACTTGA+GGG 0.544992 5_3:-3762619 None:intergenic
TAGAGATATAGTATTGGATG+TGG 0.546858 5_3:+3760623 Msa0792510:CDS
AAGGTAAGTGTTGCTGGTCA+AGG 0.546948 5_3:+3761099 Msa0792510:CDS
CCAGCAACACTTACCTTGAG+TGG 0.551535 5_3:-3761093 None:intergenic
TGATGCACGGACAAGAGAGT+TGG 0.552309 5_3:+3761547 Msa0792510:CDS
GGCTCTTGCTAGTTCTGAAG+TGG 0.556724 5_3:+3760527 Msa0792510:CDS
ACTCTCTTGTCCGTGCATCA+AGG 0.560525 5_3:-3761544 None:intergenic
TGTGTTCAAGAAGGTGAAGG+TGG 0.562146 5_3:+3761141 Msa0792510:CDS
TTTAGTTGCAAAATACAAAG+TGG 0.566853 5_3:+3764223 Msa0792510:three_prime_UTR
TGGCATCACAGTCCATATCA+AGG 0.568722 5_3:+3762646 Msa0792510:CDS
AGCTATAATCACTGCTGAAG+AGG 0.569524 5_3:+3760870 Msa0792510:CDS
TTTCTCTCTTCCAAGAATGG+TGG 0.573424 5_3:-3760724 None:intergenic
TTGTTGAAGAGCTACGAAGA+AGG 0.575051 5_3:+3761067 Msa0792510:CDS
TTTGTAGTTTCCTTGATGCA+CGG 0.575385 5_3:+3761534 Msa0792510:CDS
ACGAAGAAGGTTACCACTCA+AGG 0.578939 5_3:+3761080 Msa0792510:CDS
GGTATTGGTTAGAGACCCAA+TGG 0.587484 5_3:+3761026 Msa0792510:intron
TGAAGTTGTCTGATCAAGAT+CGG 0.589745 5_3:+3762870 Msa0792510:CDS
TCTCCCTCAAGTAGCTCTGA+CGG 0.594034 5_3:+3762616 Msa0792510:CDS
TAATTTCTTGTAGATAAGAG+AGG 0.596735 5_3:+3762519 Msa0792510:intron
TATTGATAAACAAACAGTCC+CGG 0.596765 5_3:-3763513 None:intergenic
TTATGTGTTCAAGAAGGTGA+AGG 0.608709 5_3:+3761138 Msa0792510:CDS
GTGGAAGGATATGAAAGAAG+AGG 0.608726 5_3:-3760705 None:intergenic
GTTGTCTGATCAAGATCGGA+CGG 0.610101 5_3:+3762874 Msa0792510:CDS
TCTCTTCCAAGAATGGTGGA+AGG 0.610885 5_3:-3760720 None:intergenic
TGATGGTAGAGATATAGTAT+TGG 0.611654 5_3:+3760617 Msa0792510:CDS
GAGTTGCAATCAATTTATGT+GGG 0.621368 5_3:+3764092 Msa0792510:three_prime_UTR
AAGTGCAGCAACACTTCAAG+GGG 0.628244 5_3:+3762696 Msa0792510:CDS
AGAGCTTGAGATGTTACTAG+AGG 0.632089 5_3:+3762732 Msa0792510:CDS
GATCGATGCACCTTGTTGGG+AGG 0.635193 5_3:+3763844 Msa0792510:three_prime_UTR
GTTGACAAATCGTGTTCACA+AGG 0.641613 5_3:+3762249 Msa0792510:CDS
TAGGTGATGAGATGATGTCT+CGG 0.644102 5_3:+3764019 Msa0792510:intron
TATTCTGGTACCTCCCAACA+AGG 0.647291 5_3:-3763854 None:intergenic
AACATTAAATAAATTGACCA+CGG 0.651405 5_3:+3763027 Msa0792510:CDS
ATACTATATCTCTACCATCA+CGG 0.653488 5_3:-3760614 None:intergenic
GGGACCGTCAGAGCTACTTG+AGG 0.654969 5_3:-3762620 None:intergenic
AAAATACACAGATCAAGCAG+AGG 0.682981 5_3:+3762673 Msa0792510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTATTATCAT+TGG + chr5_3:3761363-3761382 Msa0792510:intron 10.0%
!! TATATAATATGAATATAGTA+AGG + chr5_3:3761997-3762016 Msa0792510:intron 10.0%
!!! AAATAACAAATAGATATTTT+AGG + chr5_3:3762279-3762298 Msa0792510:intron 10.0%
!! AAATTATTAATCAAAGTAAT+TGG - chr5_3:3762500-3762519 None:intergenic 10.0%
!!! ATTCTGATTTTTATAATTTT+TGG + chr5_3:3763705-3763724 Msa0792510:intron 10.0%
!!! TTCTGATTTTTATAATTTTT+GGG + chr5_3:3763706-3763725 Msa0792510:intron 10.0%
!!! AATTATACTATTGTTAATTT+TGG - chr5_3:3763935-3763954 None:intergenic 10.0%
!! ATAAAAAAGTCATAATTGTT+AGG - chr5_3:3761278-3761297 None:intergenic 15.0%
!!! TGTGTTGTTTTTAATAATAA+TGG + chr5_3:3761440-3761459 Msa0792510:intron 15.0%
!!! GTGTTGTTTTTAATAATAAT+GGG + chr5_3:3761441-3761460 Msa0792510:intron 15.0%
!! ATTAAACTAAAATTCAGTTA+AGG - chr5_3:3761733-3761752 None:intergenic 15.0%
!! TATACTAATAATAACAACAT+TGG + chr5_3:3761948-3761967 Msa0792510:intron 15.0%
!!! AATTAATCAGTATTTTTTTC+AGG - chr5_3:3762065-3762084 None:intergenic 15.0%
!!! AATACTGATTAATTAATGTT+TGG + chr5_3:3762071-3762090 Msa0792510:intron 15.0%
!! ATATTTGAATACATGAATTA+TGG - chr5_3:3763425-3763444 None:intergenic 15.0%
!! TTGTTTATCAATATATTCAT+TGG + chr5_3:3763523-3763542 Msa0792510:CDS 15.0%
!! CAAGTTATGGTTATATATAT+TGG - chr5_3:3760795-3760814 None:intergenic 20.0%
!! TAAAAATGATGAAGTGAAAA+TGG + chr5_3:3760971-3760990 Msa0792510:intron 20.0%
!!! GTTTGTTGTTGTTTTATTAT+AGG + chr5_3:3761005-3761024 Msa0792510:intron 20.0%
!!! TGTTGTTTTATTATAGGTAT+TGG + chr5_3:3761011-3761030 Msa0792510:intron 20.0%
!!! AAATGGTAAGCTTTTTTTTT+TGG + chr5_3:3761170-3761189 Msa0792510:intron 20.0%
!!! TTTTTATTAGATAGAACTTG+TGG + chr5_3:3761291-3761310 Msa0792510:intron 20.0%
!!! ACAATTATTTGTTAGACTTT+AGG - chr5_3:3761672-3761691 None:intergenic 20.0%
!! TTGTTAGTTAGAAATATACT+CGG + chr5_3:3761688-3761707 Msa0792510:intron 20.0%
!! AAACACAAAAAAATATCTCA+TGG - chr5_3:3761849-3761868 None:intergenic 20.0%
!!! TTTTTGTGTTTATATCCAAA+TGG + chr5_3:3761858-3761877 Msa0792510:intron 20.0%
!!! TATAGTAAGGTTTTTATCAT+TGG + chr5_3:3762010-3762029 Msa0792510:intron 20.0%
!! ACAACATGCATATATATTAT+AGG - chr5_3:3762102-3762121 None:intergenic 20.0%
!!! GGTAATTTTTTCTTTTCAAA+AGG + chr5_3:3762300-3762319 Msa0792510:intron 20.0%
!!! GTTTCTTAGTACATTTTATA+TGG - chr5_3:3762394-3762413 None:intergenic 20.0%
!! ATTGGATATAAATATGTTGA+AGG - chr5_3:3762482-3762501 None:intergenic 20.0%
!!! ACTTTATTTATCAAGAAAGA+TGG + chr5_3:3762582-3762601 Msa0792510:CDS 20.0%
!! TAATAGTCTCTAATTTCTAT+TGG - chr5_3:3762812-3762831 None:intergenic 20.0%
!! ATAAATGAAAATCTCTCATT+TGG + chr5_3:3762834-3762853 Msa0792510:intron 20.0%
!! AACATTAAATAAATTGACCA+CGG + chr5_3:3763027-3763046 Msa0792510:CDS 20.0%
!! CTTACAAATTATTTACTACT+AGG + chr5_3:3763241-3763260 Msa0792510:intron 20.0%
!! ATATATCATGCACAATAATA+AGG - chr5_3:3763468-3763487 None:intergenic 20.0%
!!! AGTTGCAAAATTCATTTTTT+AGG + chr5_3:3764163-3764182 Msa0792510:three_prime_UTR 20.0%
!!! TCATTTTTTAGGTTTTATGA+AGG + chr5_3:3764174-3764193 Msa0792510:three_prime_UTR 20.0%
!! CAAAAACAGAATTCAAGTTA+TGG - chr5_3:3760808-3760827 None:intergenic 25.0%
! GTATAGAAACGAAATTACAA+TGG + chr5_3:3761192-3761211 Msa0792510:intron 25.0%
! TTGTGAGAAATACATTGTAT+CGG + chr5_3:3761331-3761350 Msa0792510:intron 25.0%
! AAAAGATTTGATTACCTTAG+AGG - chr5_3:3761606-3761625 None:intergenic 25.0%
! ATAAAGAAGATGTGATATGT+CGG - chr5_3:3761791-3761810 None:intergenic 25.0%
!! TAAGGTTTTTATCATTGGAA+AGG + chr5_3:3762015-3762034 Msa0792510:intron 25.0%
!! AAGGTTTTTATCATTGGAAA+GGG + chr5_3:3762016-3762035 Msa0792510:intron 25.0%
!! AATTAAAAAGTGCAATGACT+AGG + chr5_3:3762227-3762246 Msa0792510:CDS 25.0%
! TAATTTCTTGTAGATAAGAG+AGG + chr5_3:3762519-3762538 Msa0792510:intron 25.0%
!!! TGTATTTTTGAACCTTGATA+TGG - chr5_3:3762661-3762680 None:intergenic 25.0%
!!! CTAATTTCTATTGGTTTTTC+TGG - chr5_3:3762803-3762822 None:intergenic 25.0%
! ATACATCATAAGCTAATTCA+TGG - chr5_3:3762957-3762976 None:intergenic 25.0%
! TCCATCAATTTGTATGAAAT+AGG - chr5_3:3763008-3763027 None:intergenic 25.0%
!! TGATTTCTGTTTTACACTTT+AGG + chr5_3:3763110-3763129 Msa0792510:intron 25.0%
! CTGTATGTTAATGTAATCTT+CGG - chr5_3:3763157-3763176 None:intergenic 25.0%
! TTAACATACAGGTAAGTTTA+AGG + chr5_3:3763166-3763185 Msa0792510:intron 25.0%
! TAACATACAGGTAAGTTTAA+GGG + chr5_3:3763167-3763186 Msa0792510:intron 25.0%
! TCAAATTTGCACACATATAT+TGG + chr5_3:3763299-3763318 Msa0792510:intron 25.0%
! TCACGCATATGTATTTAAAT+GGG + chr5_3:3763592-3763611 Msa0792510:CDS 25.0%
! ATTAGACAGAAAAAGAGAAT+CGG + chr5_3:3763669-3763688 Msa0792510:intron 25.0%
! TTTAGTTGCAAAATACAAAG+TGG + chr5_3:3764223-3764242 Msa0792510:three_prime_UTR 25.0%
AAACTACTATTTCAAGAAGC+TGG + chr5_3:3760580-3760599 Msa0792510:CDS 30.0%
ATACTATATCTCTACCATCA+CGG - chr5_3:3760617-3760636 None:intergenic 30.0%
TGATGGTAGAGATATAGTAT+TGG + chr5_3:3760617-3760636 Msa0792510:CDS 30.0%
! TAGAGATATAGTATTGGATG+TGG + chr5_3:3760623-3760642 Msa0792510:CDS 30.0%
TAAGTATGCTATTATGCGTT+TGG + chr5_3:3760647-3760666 Msa0792510:CDS 30.0%
TCTAGTGTTGTATAGTTTCA+TGG + chr5_3:3761391-3761410 Msa0792510:intron 30.0%
TCAGTTAAGGTTAGATTGTT+TGG - chr5_3:3761720-3761739 None:intergenic 30.0%
GTGTTTATATCCAAATGGTT+AGG + chr5_3:3761863-3761882 Msa0792510:intron 30.0%
TTATATCCAAATGGTTAGGA+TGG + chr5_3:3761867-3761886 Msa0792510:intron 30.0%
! AGGTTTTTATCATTGGAAAG+GGG + chr5_3:3762017-3762036 Msa0792510:intron 30.0%
TGCATGTTGTCACAAAATTA+TGG + chr5_3:3762112-3762131 Msa0792510:intron 30.0%
CGATTATTAAGGAGTAGAAA+GGG - chr5_3:3762146-3762165 None:intergenic 30.0%
ACGATTATTAAGGAGTAGAA+AGG - chr5_3:3762147-3762166 None:intergenic 30.0%
AACCAAAGTGACGATTATTA+AGG - chr5_3:3762157-3762176 None:intergenic 30.0%
!! AGACATTTAATTTGACGACT+AGG - chr5_3:3762326-3762345 None:intergenic 30.0%
CGTCAAATTAAATGTCTCAA+CGG + chr5_3:3762329-3762348 Msa0792510:intron 30.0%
! CTAATTCATGGAAATGGATT+AGG - chr5_3:3762945-3762964 None:intergenic 30.0%
CATAAGCTAATTCATGGAAA+TGG - chr5_3:3762951-3762970 None:intergenic 30.0%
GCCTATTTCATACAAATTGA+TGG + chr5_3:3763004-3763023 Msa0792510:CDS 30.0%
CGAAGATTACATTAACATAC+AGG + chr5_3:3763155-3763174 Msa0792510:CDS 30.0%
! CCATTTAAGTTAACTACTTC+CGG + chr5_3:3763275-3763294 Msa0792510:intron 30.0%
ATATGTGTGCAAATTTGAAC+CGG - chr5_3:3763297-3763316 None:intergenic 30.0%
! ATACCTGAATCAGTTGATTT+CGG - chr5_3:3763396-3763415 None:intergenic 30.0%
TATTGATAAACAAACAGTCC+CGG - chr5_3:3763516-3763535 None:intergenic 30.0%
GTATGAACATTCCATATACA+TGG + chr5_3:3763561-3763580 Msa0792510:CDS 30.0%
ATTCCATATACATGGAAAGA+AGG + chr5_3:3763569-3763588 Msa0792510:CDS 30.0%
GTCACGCATATGTATTTAAA+TGG + chr5_3:3763591-3763610 Msa0792510:CDS 30.0%
CGATATTATGGACAAAAAGA+AGG - chr5_3:3763781-3763800 None:intergenic 30.0%
ACACTTTCGACTTAATATTC+TGG - chr5_3:3763872-3763891 None:intergenic 30.0%
!! TTGGTGCTATATATCGAAAT+TGG - chr5_3:3763916-3763935 None:intergenic 30.0%
CTCAAAGATCTTCTATATCT+TGG - chr5_3:3764046-3764065 None:intergenic 30.0%
AGCAATACTTGCAAAATAAC+AGG + chr5_3:3764070-3764089 Msa0792510:three_prime_UTR 30.0%
GAGTTGCAATCAATTTATGT+GGG + chr5_3:3764092-3764111 Msa0792510:three_prime_UTR 30.0%
GGCAATAGCTTGATTTATAA+TGG + chr5_3:3764113-3764132 Msa0792510:three_prime_UTR 30.0%
TGCAAGAGATCTTCGAATAA+TGG + chr5_3:3760680-3760699 Msa0792510:CDS 35.0%
AGTCATTGTTCTCAATCTAG+AGG + chr5_3:3760746-3760765 Msa0792510:intron 35.0%
CACATAACTCTTCTTCTACT+TGG - chr5_3:3761125-3761144 None:intergenic 35.0%
GAAGAGTTATGTGTTCAAGA+AGG + chr5_3:3761132-3761151 Msa0792510:CDS 35.0%
TTATGTGTTCAAGAAGGTGA+AGG + chr5_3:3761138-3761157 Msa0792510:CDS 35.0%
!! AATGGGAAATTGACTTGTGT+TGG + chr5_3:3761458-3761477 Msa0792510:intron 35.0%
TTTGTAGTTTCCTTGATGCA+CGG + chr5_3:3761534-3761553 Msa0792510:CDS 35.0%
TTTGGATGAACTAACCTCTA+AGG + chr5_3:3761589-3761608 Msa0792510:CDS 35.0%
CTCCTTAATAATCGTCACTT+TGG + chr5_3:3762152-3762171 Msa0792510:intron 35.0%
!!! TCTCAACGGTTTTTTACCAT+TGG + chr5_3:3762343-3762362 Msa0792510:intron 35.0%
ACCATTGGTACTGTATTACA+AGG + chr5_3:3762358-3762377 Msa0792510:intron 35.0%
ACCTTGTAATACAGTACCAA+TGG - chr5_3:3762362-3762381 None:intergenic 35.0%
TGTCATCATCATCATCAAGT+AGG - chr5_3:3762555-3762574 None:intergenic 35.0%
!! ACTTGATGATGATGATGACA+TGG + chr5_3:3762555-3762574 Msa0792510:CDS 35.0%
AAAATACACAGATCAAGCAG+AGG + chr5_3:3762673-3762692 Msa0792510:CDS 35.0%
TGAAGTTGTCTGATCAAGAT+CGG + chr5_3:3762870-3762889 Msa0792510:CDS 35.0%
TGAATAATGTCGTTCTTTGC+AGG + chr5_3:3762982-3763001 Msa0792510:intron 35.0%
TTAGTTCACTGTTATTACCG+TGG - chr5_3:3763047-3763066 None:intergenic 35.0%
CCGGAAGTAGTTAACTTAAA+TGG - chr5_3:3763278-3763297 None:intergenic 35.0%
! TCATTGGTAGCTGCAATATT+TGG + chr5_3:3763539-3763558 Msa0792510:CDS 35.0%
TGACCTTCTTTCCATGTATA+TGG - chr5_3:3763575-3763594 None:intergenic 35.0%
TGGGTTCAAATTGCATCTTT+AGG + chr5_3:3763725-3763744 Msa0792510:intron 35.0%
GTTCAAATTGCATCTTTAGG+TGG + chr5_3:3763728-3763747 Msa0792510:intron 35.0%
ATTCTTACTGGAATGGTTTG+TGG + chr5_3:3763753-3763772 Msa0792510:CDS 35.0%
! CTATATATCGAAATTGGCCT+TGG - chr5_3:3763910-3763929 None:intergenic 35.0%
GGAGTTGCAATCAATTTATG+TGG + chr5_3:3764091-3764110 Msa0792510:three_prime_UTR 35.0%
GTGGAAGGATATGAAAGAAG+AGG - chr5_3:3760708-3760727 None:intergenic 40.0%
TCATATCCTTCCACCATTCT+TGG + chr5_3:3760714-3760733 Msa0792510:CDS 40.0%
TTTCTCTCTTCCAAGAATGG+TGG - chr5_3:3760727-3760746 None:intergenic 40.0%
GACTTTCTCTCTTCCAAGAA+TGG - chr5_3:3760730-3760749 None:intergenic 40.0%
AGCTATAATCACTGCTGAAG+AGG + chr5_3:3760870-3760889 Msa0792510:CDS 40.0%
GCACAACATCATCATCCATT+GGG - chr5_3:3761044-3761063 None:intergenic 40.0%
TTGTTGAAGAGCTACGAAGA+AGG + chr5_3:3761067-3761086 Msa0792510:CDS 40.0%
!! TTAGGTTGAATGCCGTAATC+AGG - chr5_3:3761260-3761279 None:intergenic 40.0%
! TCCATTTGAGTTTCGAGCTT+TGG + chr5_3:3761493-3761512 Msa0792510:CDS 40.0%
TCCAAAGCTCGAAACTCAAA+TGG - chr5_3:3761497-3761516 None:intergenic 40.0%
!! TCGAGCTTTGGAAGTTGTAT+TGG + chr5_3:3761505-3761524 Msa0792510:CDS 40.0%
!! AGCTTTGGAAGTTGTATTGG+AGG + chr5_3:3761508-3761527 Msa0792510:CDS 40.0%
TATCCAAATGGTTAGGATGG+CGG + chr5_3:3761870-3761889 Msa0792510:intron 40.0%
ACAGATCAGCAGTCGTAATT+TGG + chr5_3:3762192-3762211 Msa0792510:intron 40.0%
GTTGACAAATCGTGTTCACA+AGG + chr5_3:3762249-3762268 Msa0792510:CDS 40.0%
! TATGGACTGTGATGCCAATT+GGG - chr5_3:3762643-3762662 None:intergenic 40.0%
! ATATGGACTGTGATGCCAAT+TGG - chr5_3:3762644-3762663 None:intergenic 40.0%
AGAGCTTGAGATGTTACTAG+AGG + chr5_3:3762732-3762751 Msa0792510:CDS 40.0%
! TCACCGAAATCAACTGATTC+AGG + chr5_3:3763390-3763409 Msa0792510:CDS 40.0%
CTAGAGCTATTCCTAAGTTC+CGG + chr5_3:3763494-3763513 Msa0792510:CDS 40.0%
TAGAGCTATTCCTAAGTTCC+GGG + chr5_3:3763495-3763514 Msa0792510:CDS 40.0%
AGACAGAAAAAGAGAATCGG+TGG + chr5_3:3763672-3763691 Msa0792510:intron 40.0%
GACAGAAAAAGAGAATCGGT+GGG + chr5_3:3763673-3763692 Msa0792510:intron 40.0%
CTTTAGGTGGTGATTCTTAC+TGG + chr5_3:3763741-3763760 Msa0792510:intron 40.0%
! AGTCGAAAGTGTACATAACG+TGG + chr5_3:3763880-3763899 Msa0792510:intron 40.0%
GTACATAACGTGGAAATCCA+AGG + chr5_3:3763890-3763909 Msa0792510:intron 40.0%
TAGGTGATGAGATGATGTCT+CGG + chr5_3:3764019-3764038 Msa0792510:intron 40.0%
! TGGATTTTGCTAGACCGTGA+TGG + chr5_3:3760600-3760619 Msa0792510:CDS 45.0%
! TCTCTTCCAAGAATGGTGGA+AGG - chr5_3:3760723-3760742 None:intergenic 45.0%
!! GGTATTGGTTAGAGACCCAA+TGG + chr5_3:3761026-3761045 Msa0792510:intron 45.0%
GGCACAACATCATCATCCAT+TGG - chr5_3:3761045-3761064 None:intergenic 45.0%
CTTCGTAGCTCTTCAACAAC+AGG - chr5_3:3761066-3761085 None:intergenic 45.0%
ACGAAGAAGGTTACCACTCA+AGG + chr5_3:3761080-3761099 Msa0792510:CDS 45.0%
! AAGGTAAGTGTTGCTGGTCA+AGG + chr5_3:3761099-3761118 Msa0792510:CDS 45.0%
TGTGTTCAAGAAGGTGAAGG+TGG + chr5_3:3761141-3761160 Msa0792510:CDS 45.0%
GGTGAAGGTGGAGAAGAAAA+TGG + chr5_3:3761153-3761172 Msa0792510:CDS 45.0%
AGAAACTCACACACGAGTAG+AGG + chr5_3:3761220-3761239 Msa0792510:intron 45.0%
! GAGGTTAGTTCATCCAAAGC+TGG - chr5_3:3761587-3761606 None:intergenic 45.0%
TAAGGAGTAGAAAGGGACGA+GGG - chr5_3:3762139-3762158 None:intergenic 45.0%
TTAAGGAGTAGAAAGGGACG+AGG - chr5_3:3762140-3762159 None:intergenic 45.0%
TGGCATCACAGTCCATATCA+AGG + chr5_3:3762646-3762665 Msa0792510:CDS 45.0%
GAAGTGCAGCAACACTTCAA+GGG + chr5_3:3762695-3762714 Msa0792510:CDS 45.0%
AAGTGCAGCAACACTTCAAG+GGG + chr5_3:3762696-3762715 Msa0792510:CDS 45.0%
ATCTCTCATTTGGCGACAGT+CGG + chr5_3:3762844-3762863 Msa0792510:intron 45.0%
GTTGTCTGATCAAGATCGGA+CGG + chr5_3:3762874-3762893 Msa0792510:CDS 45.0%
AACAAACAGTCCCGGAACTT+AGG - chr5_3:3763508-3763527 None:intergenic 45.0%
GGTGGTGATTCTTACTGGAA+TGG + chr5_3:3763746-3763765 Msa0792510:intron 45.0%
GCGTCGAGCATACGATATTA+TGG - chr5_3:3763793-3763812 None:intergenic 45.0%
ATATCGTATGCTCGACGCAA+AGG + chr5_3:3763795-3763814 Msa0792510:CDS 45.0%
TGAAGATCGATGCACCTTGT+TGG + chr5_3:3763840-3763859 Msa0792510:three_prime_UTR 45.0%
GAAGATCGATGCACCTTGTT+GGG + chr5_3:3763841-3763860 Msa0792510:three_prime_UTR 45.0%
TATTCTGGTACCTCCCAACA+AGG - chr5_3:3763857-3763876 None:intergenic 45.0%
!!! TTTTTTCTTAAAAAAAAAAT+AGG + chr5_3:3764000-3764019 Msa0792510:intron 5.0%
!! GGCTCTTGCTAGTTCTGAAG+TGG + chr5_3:3760527-3760546 Msa0792510:CDS 50.0%
CCAGCAACACTTACCTTGAG+TGG - chr5_3:3761096-3761115 None:intergenic 50.0%
! CCACTCAAGGTAAGTGTTGC+TGG + chr5_3:3761093-3761112 Msa0792510:CDS 50.0%
TCACACACGAGTAGAGGAAC+CGG + chr5_3:3761226-3761245 Msa0792510:intron 50.0%
ACTCTCTTGTCCGTGCATCA+AGG - chr5_3:3761547-3761566 None:intergenic 50.0%
TGATGCACGGACAAGAGAGT+TGG + chr5_3:3761547-3761566 Msa0792510:CDS 50.0%
! GACTGCTGCTTATCCAGCTT+TGG + chr5_3:3761571-3761590 Msa0792510:CDS 50.0%
GTCGGTGATGTGATGAGAAG+AGG - chr5_3:3761773-3761792 None:intergenic 50.0%
TAGCCGCCATCCTAACCATT+TGG - chr5_3:3761876-3761895 None:intergenic 50.0%
!! TCTCCCTCAAGTAGCTCTGA+CGG + chr5_3:3762616-3762635 Msa0792510:CDS 50.0%
! GGAAGTGCAGCAACACTTCA+AGG + chr5_3:3762694-3762713 Msa0792510:CDS 50.0%
!! CTCGACGCAAAGGTCTTGTT+GGG + chr5_3:3763805-3763824 Msa0792510:CDS 50.0%
CACACACGAGTAGAGGAACC+GGG + chr5_3:3761227-3761246 Msa0792510:intron 55.0%
CCGTAATCAGGTTCGAGTCC+CGG - chr5_3:3761248-3761267 None:intergenic 55.0%
CCGGGACTCGAACCTGATTA+CGG + chr5_3:3761245-3761264 Msa0792510:intron 55.0%
GTCAGAGCTACTTGAGGGAG+AGG - chr5_3:3762617-3762636 None:intergenic 55.0%
GGACCGTCAGAGCTACTTGA+GGG - chr5_3:3762622-3762641 None:intergenic 55.0%
!! GTAGCTCTGACGGTCCCAAT+TGG + chr5_3:3762626-3762645 Msa0792510:CDS 55.0%
! GCTCGACGCAAAGGTCTTGT+TGG + chr5_3:3763804-3763823 Msa0792510:CDS 55.0%
GATCGATGCACCTTGTTGGG+AGG + chr5_3:3763844-3763863 Msa0792510:three_prime_UTR 55.0%
GGGACCGTCAGAGCTACTTG+AGG - chr5_3:3762623-3762642 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3760525 3764258 3760525 ID=Msa0792510;Name=Msa0792510
chr5_3 mRNA 3760525 3764258 3760525 ID=Msa0792510-mRNA-1;Parent=Msa0792510;Name=Msa0792510-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.75|0.84|0.92|0.91|0.84|13|269|392
chr5_3 exon 3760525 3760746 3760525 ID=Msa0792510-mRNA-1:exon:1620;Parent=Msa0792510-mRNA-1
chr5_3 exon 3760862 3760891 3760862 ID=Msa0792510-mRNA-1:exon:1621;Parent=Msa0792510-mRNA-1
chr5_3 exon 3761027 3761174 3761027 ID=Msa0792510-mRNA-1:exon:1622;Parent=Msa0792510-mRNA-1
chr5_3 exon 3761489 3761610 3761489 ID=Msa0792510-mRNA-1:exon:1623;Parent=Msa0792510-mRNA-1
chr5_3 exon 3762196 3762270 3762196 ID=Msa0792510-mRNA-1:exon:1624;Parent=Msa0792510-mRNA-1
chr5_3 exon 3762532 3762753 3762532 ID=Msa0792510-mRNA-1:exon:1625;Parent=Msa0792510-mRNA-1
chr5_3 exon 3762863 3762895 3762863 ID=Msa0792510-mRNA-1:exon:1626;Parent=Msa0792510-mRNA-1
chr5_3 exon 3763004 3763048 3763004 ID=Msa0792510-mRNA-1:exon:1627;Parent=Msa0792510-mRNA-1
chr5_3 exon 3763132 3763176 3763132 ID=Msa0792510-mRNA-1:exon:1628;Parent=Msa0792510-mRNA-1
chr5_3 exon 3763382 3763411 3763382 ID=Msa0792510-mRNA-1:exon:1629;Parent=Msa0792510-mRNA-1
chr5_3 exon 3763494 3763613 3763494 ID=Msa0792510-mRNA-1:exon:1630;Parent=Msa0792510-mRNA-1
chr5_3 exon 3763747 3763865 3763747 ID=Msa0792510-mRNA-1:exon:1631;Parent=Msa0792510-mRNA-1
chr5_3 exon 3764022 3764258 3764022 ID=Msa0792510-mRNA-1:exon:1632;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3760525 3760746 3760525 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3760862 3760891 3760862 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3761027 3761174 3761027 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3761489 3761610 3761489 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3762196 3762270 3762196 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3762532 3762753 3762532 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3762863 3762895 3762863 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3763004 3763048 3763004 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3763132 3763176 3763132 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3763382 3763411 3763382 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3763494 3763613 3763494 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 CDS 3763747 3763833 3763747 ID=Msa0792510-mRNA-1:cds;Parent=Msa0792510-mRNA-1
chr5_3 three_prime_UTR 3763834 3763865 3763834 ID=Msa0792510-mRNA-1:three_prime_utr;Parent=Msa0792510-mRNA-1
chr5_3 three_prime_UTR 3764022 3764258 3764022 ID=Msa0792510-mRNA-1:three_prime_utr;Parent=Msa0792510-mRNA-1
Gene Sequence

>Msa0792510

ATGGCTCTTGCTAGTTCTGAAGTGGAGCTTAAAGTTCAAGCTATGAATAAGAAGAAAACTACTATTTCAAGAAGCTGGATTTTGCTAGACCGTGATGGTAGAGATATAGTATTGGATGTGGATAAGTATGCTATTATGCGTTTGGTTGAAATTCATGCAAGAGATCTTCGAATAATGGATCCTCTTCTTTCATATCCTTCCACCATTCTTGGAAGAGAGAAACACATAAAAGCTATAATCACTGCTGAAGAGGTATTGGTTAGAGACCCAATGGATGATGATGTTGTGCCTGTTGTTGAAGAGCTACGAAGAAGGTTACCACTCAAGGTAAGTGTTGCTGGTCAAGGCCAAGTAGAAGAAGAGTTATGTGTTCAAGAAGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGTTTCGAGCTTTGGAAGTTGTATTGGAGGCAATTTGTAGTTTCCTTGATGCACGGACAAGAGAGTTGGAGACTGCTGCTTATCCAGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATAAAGTGCGAAAATTAAAAAGTGCAATGACTAGGTTGACAAATCGTGTTCACAAGATAAGAGAGGAACTAGAAAACCTACTTGATGATGATGATGACATGGCTGAACTTTATTTATCAAGAAAGATGGCTGTTTCATCCTCTCCCTCAAGTAGCTCTGACGGTCCCAATTGGCATCACAGTCCATATCAAGGTTCAAAAATACACAGATCAAGCAGAGGAAGTGCAGCAACACTTCAAGGGGAGAATGATGTTGAAGAGCTTGAGATGTTACTAGAGTCGGCGTTGAAGTTGTCTGATCAAGATCGGACGGCCTATTTCATACAAATTGATGGAACATTAAATAAATTGACCACGGTGCGAGAGTATATTGATGACACCGAAGATTACATTAACATACAGCTTGATAATCACCGAAATCAACTGATTCAGCTAGAGCTATTCCTAAGTTCCGGGACTGTTTGTTTATCAATATATTCATTGGTAGCTGCAATATTTGGTATGAACATTCCATATACATGGAAAGAAGGTCACGCATATGTATTTAAATGGGTGGTGATTCTTACTGGAATGGTTTGTGGAACCTTCTTTTTGTCCATAATATCGTATGCTCGACGCAAAGGTCTTGTTGGGTCTTGA

Protein sequence

>Msa0792510

MALASSEVELKVQAMNKKKTTISRSWILLDRDGRDIVLDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKHIKAIITAEEVLVRDPMDDDVVPVVEELRRRLPLKVSVAGQGQVEEELCVQEGEGGEENEFPFEFRALEVVLEAICSFLDARTRELETAAYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDDDMAELYLSRKMAVSSSPSSSSDGPNWHHSPYQGSKIHRSSRGSAATLQGENDVEELEMLLESALKLSDQDRTAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWKEGHAYVFKWVVILTGMVCGTFFLSIISYARRKGLVGS*