Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106280 | XP_013466655.1 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106280 | sp|Q42565|ASB1_ARATH | 69.784 | 278 | 71 | 3 | 1 | 269 | 1 | 274 | 7.60e-140 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106280 | B7FJB9 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094010 | Msa0106280 | 0.808115 | 3.629012e-50 | -8.615850e-47 |
| Msa0106280 | Msa0152840 | 0.912282 | 2.327623e-83 | -8.615850e-47 |
| Msa0106280 | Msa0403190 | 0.834477 | 2.929724e-56 | -8.615850e-47 |
| Msa0106280 | Msa0578090 | 0.802447 | 5.587416e-49 | -8.615850e-47 |
| Msa0106280 | Msa0609970 | 0.819698 | 1.012941e-52 | -8.615850e-47 |
| Msa0106280 | Msa0663510 | 0.802969 | 4.359154e-49 | -8.615850e-47 |
| Msa0106280 | Msa0707390 | 0.812609 | 3.890248e-51 | -8.615850e-47 |
| Msa0106280 | Msa1246530 | -0.803123 | 4.050461e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106280 | MtrunA17_Chr1g0162011 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| Msa0106280 | MtrunA17_Chr4g0057811 | 27.225 | 191 | 126 | 5 | 81 | 270 | 243 | 421 | 2.94e-11 | 63.2 |
| Msa0106280 | MtrunA17_Chr3g0129631 | 26.738 | 187 | 124 | 5 | 81 | 266 | 244 | 418 | 5.38e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106280 | AT1G25220.1 | 69.784 | 278 | 71 | 3 | 1 | 269 | 1 | 274 | 7.72e-141 | 397 |
| Msa0106280 | AT1G25220.2 | 66.667 | 291 | 71 | 4 | 1 | 269 | 1 | 287 | 5.60e-137 | 388 |
| Msa0106280 | AT1G24909.1 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.14e-135 | 381 |
| Msa0106280 | AT1G25083.1 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.14e-135 | 381 |
| Msa0106280 | AT1G25155.1 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.14e-135 | 381 |
| Msa0106280 | AT5G57890.1 | 68.613 | 274 | 78 | 3 | 1 | 269 | 1 | 271 | 2.15e-134 | 380 |
| Msa0106280 | AT1G24807.1 | 74.892 | 231 | 45 | 1 | 52 | 269 | 3 | 233 | 1.92e-131 | 372 |
| Msa0106280 | AT2G28880.1 | 31.349 | 252 | 102 | 10 | 71 | 258 | 88 | 332 | 7.53e-23 | 98.2 |
| Msa0106280 | AT3G27740.2 | 28.191 | 188 | 122 | 5 | 82 | 268 | 182 | 357 | 1.42e-13 | 70.1 |
| Msa0106280 | AT3G27740.1 | 28.191 | 188 | 122 | 5 | 82 | 268 | 254 | 429 | 2.58e-13 | 69.7 |
Find 87 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATTCCTATAGATTTA+AGG | 0.124314 | 1_3:+15467661 | None:intergenic |
| TATCATTTGCAGTCCTTTCT+TGG | 0.192637 | 1_3:-15468785 | Msa0106280:intron |
| GTTGTGCTAAAAGCTTCTTC+TGG | 0.199693 | 1_3:-15471137 | Msa0106280:CDS |
| TGTGAAGCTTATAGAGAAAA+AGG | 0.241377 | 1_3:-15467858 | Msa0106280:CDS |
| AACAATTGGATCATTGGATT+TGG | 0.282127 | 1_3:+15471070 | None:intergenic |
| AAAATTATTCGTGCTCCTTC+TGG | 0.296696 | 1_3:-15469141 | Msa0106280:CDS |
| AACAATTCCTATAGATTTAA+GGG | 0.311033 | 1_3:+15467662 | None:intergenic |
| ACAAACCTGACAAAGATTAT+AGG | 0.326193 | 1_3:+15471022 | None:intergenic |
| AGAATTTCCCTTAAATCTAT+AGG | 0.339835 | 1_3:-15467669 | Msa0106280:three_prime_UTR |
| AATAACAACAATTGGATCAT+TGG | 0.340721 | 1_3:+15471064 | None:intergenic |
| CATTTACGTTTGAAGTATAT+GGG | 0.344378 | 1_3:-15469898 | Msa0106280:intron |
| TTGTGCTAAAAGCTTCTTCT+GGG | 0.346732 | 1_3:-15471136 | Msa0106280:CDS |
| CCACCGTTAGCTCGTCATTT+CGG | 0.362383 | 1_3:+15469848 | None:intergenic |
| CTGAATTACTGTTCGAAGTT+CGG | 0.363514 | 1_3:-15467800 | Msa0106280:three_prime_UTR |
| CGGACAATCGTCTTGCCGTC+AGG | 0.372754 | 1_3:+15467887 | None:intergenic |
| GGAGAAGATGGATTACTTGC+TGG | 0.373096 | 1_3:-15469075 | Msa0106280:CDS |
| CAGTGCATGGGAGAGGCTTT+CGG | 0.382226 | 1_3:-15469455 | Msa0106280:CDS |
| GAGATGGGTTTGGTTGAAGA+AGG | 0.394691 | 1_3:+15471322 | None:intergenic |
| GAATTCAAAGCAAGGTGTTT+CGG | 0.400742 | 1_3:-15471102 | Msa0106280:CDS |
| ACAGGAACACCTCAAGATTC+AGG | 0.404227 | 1_3:-15469545 | Msa0106280:intron |
| ATTTGCAGTCCTTTCTTGGC+TGG | 0.424817 | 1_3:-15468781 | Msa0106280:intron |
| AAAAGCTTCTTCTGGGGCAT+TGG | 0.426234 | 1_3:-15471129 | Msa0106280:CDS |
| GGACCAACTATCCCTGTGTT+TGG | 0.428815 | 1_3:-15469494 | Msa0106280:CDS |
| CTGCTCGTCACAAGAAATAT+CGG | 0.432561 | 1_3:-15468669 | Msa0106280:CDS |
| CTGGTTTATTATGATGAGAA+AGG | 0.437559 | 1_3:-15469096 | Msa0106280:CDS |
| GTTACTTCAAGTTCATCATC+AGG | 0.439615 | 1_3:+15468721 | None:intergenic |
| GGAGCTAGGATTTCACTTTG+AGG | 0.441647 | 1_3:-15469875 | Msa0106280:CDS |
| GAGGTGAAAGAGAGAGAGAT+GGG | 0.444684 | 1_3:+15471307 | None:intergenic |
| TATTGCAGATTTACGGTTTG+AGG | 0.444800 | 1_3:-15471177 | Msa0106280:intron |
| CTTTACCTATAATCTTTGTC+AGG | 0.445958 | 1_3:-15471027 | Msa0106280:intron |
| AGATGGGTTTGGTTGAAGAA+GGG | 0.451642 | 1_3:+15471323 | None:intergenic |
| TAGTTATCAATAACAACAAT+TGG | 0.455748 | 1_3:+15471056 | None:intergenic |
| TTTGAGGCCAAAAGGGGAAA+AGG | 0.455803 | 1_3:-15471161 | Msa0106280:CDS |
| CCCTGTGTTTGGCGTATGCA+TGG | 0.458028 | 1_3:-15469483 | Msa0106280:CDS |
| GCTCCTTCTGGTGTGATGCA+TGG | 0.460017 | 1_3:-15469129 | Msa0106280:CDS |
| GAAAGAGAGAGAGATGGGTT+TGG | 0.460763 | 1_3:+15471312 | None:intergenic |
| CTCCTTCTGGTGTGATGCAT+GGG | 0.464234 | 1_3:-15469128 | Msa0106280:CDS |
| TTGAGGCCAAAAGGGGAAAA+GGG | 0.467181 | 1_3:-15471160 | Msa0106280:CDS |
| TATGATGAGAAAGGAGAAGA+TGG | 0.477155 | 1_3:-15469087 | Msa0106280:CDS |
| GATGCATGGGAAAAGTTCTC+TGG | 0.479885 | 1_3:-15469115 | Msa0106280:CDS |
| TTTACGGTTTGAGGCCAAAA+GGG | 0.485215 | 1_3:-15471168 | Msa0106280:CDS |
| CGTGGCAGGGAAAAGAAACT+TGG | 0.487575 | 1_3:-15467701 | Msa0106280:three_prime_UTR |
| TCACAGCCTTGTAATTGAAA+AGG | 0.491056 | 1_3:-15468752 | Msa0106280:CDS |
| ATTTACGGTTTGAGGCCAAA+AGG | 0.492849 | 1_3:-15471169 | Msa0106280:CDS |
| GACTGAAGATGGTCTCATAA+TGG | 0.496178 | 1_3:-15468692 | Msa0106280:CDS |
| TGAGGTGAAAGAGAGAGAGA+TGG | 0.498343 | 1_3:+15471306 | None:intergenic |
| TGATATCTTCCAGCCAAGAA+AGG | 0.499322 | 1_3:+15468772 | None:intergenic |
| TCAGGGGTAATGATGCTCTC+TGG | 0.500396 | 1_3:+15467905 | None:intergenic |
| ATTCTGAATCAAATCGTGGC+AGG | 0.519585 | 1_3:-15467715 | Msa0106280:three_prime_UTR |
| GGACAATCGTCTTGCCGTCA+GGG | 0.533610 | 1_3:+15467888 | None:intergenic |
| ACGCCAAACACAGGGATAGT+TGG | 0.535785 | 1_3:+15469491 | None:intergenic |
| CAAGAAATATCGGCATATGC+AGG | 0.540602 | 1_3:-15468659 | Msa0106280:intron |
| AGAGGAGTGCTGATATCACC+TGG | 0.541959 | 1_3:-15469702 | Msa0106280:CDS |
| AGGCAATCTTTACCTGGCCC+AGG | 0.547194 | 1_3:+15469684 | None:intergenic |
| GTAACAGCATGGACTGAAGA+TGG | 0.547261 | 1_3:-15468703 | Msa0106280:CDS |
| GGGATTACAGTGCATGGGAG+AGG | 0.547779 | 1_3:-15469462 | Msa0106280:CDS |
| ATGCATGGGATTACAGTGCA+TGG | 0.551323 | 1_3:-15469468 | Msa0106280:CDS |
| CCCATGCATACGCCAAACAC+AGG | 0.560978 | 1_3:+15469482 | None:intergenic |
| GTGCTGATATCACCTGGGCC+AGG | 0.568658 | 1_3:-15469696 | Msa0106280:intron |
| CCTGTGTTTGGCGTATGCAT+GGG | 0.573126 | 1_3:-15469482 | Msa0106280:CDS |
| AAATGACGAGCTAACGGTGG+AGG | 0.577905 | 1_3:-15469845 | Msa0106280:CDS |
| TAACGGTGGAGGAGTTGAAA+AGG | 0.579632 | 1_3:-15469834 | Msa0106280:intron |
| TTCCCATGCATCACACCAGA+AGG | 0.583344 | 1_3:+15469126 | None:intergenic |
| TGCATGGGATTACAGTGCAT+GGG | 0.592618 | 1_3:-15469467 | Msa0106280:CDS |
| CTATAAGCTTCACAAAGTTG+CGG | 0.594543 | 1_3:+15467867 | None:intergenic |
| TACAATTCTGAATCAAATCG+TGG | 0.595134 | 1_3:-15467719 | Msa0106280:three_prime_UTR |
| TGAGGCCAAAAGGGGAAAAG+GGG | 0.595566 | 1_3:-15471159 | Msa0106280:CDS |
| GGTGATATCAGCACTCCTCT+CGG | 0.597752 | 1_3:+15469705 | None:intergenic |
| TTCTGAATCAAATCGTGGCA+GGG | 0.598669 | 1_3:-15467714 | Msa0106280:three_prime_UTR |
| ATTTACGTTTGAAGTATATG+GGG | 0.600393 | 1_3:-15469897 | Msa0106280:intron |
| GAGAGCATCATTACCCCTGA+CGG | 0.606613 | 1_3:-15467902 | Msa0106280:CDS |
| TTACGGTTTGAGGCCAAAAG+GGG | 0.614380 | 1_3:-15471167 | Msa0106280:CDS |
| CTACCGAAATGACGAGCTAA+CGG | 0.615964 | 1_3:-15469851 | Msa0106280:CDS |
| ACAATTACAAACAACAACAA+TGG | 0.616729 | 1_3:-15471370 | Msa0106280:exon |
| GACAATCGTCTTGCCGTCAG+GGG | 0.625626 | 1_3:+15467889 | None:intergenic |
| TTTACGTTTGAAGTATATGG+GGG | 0.628330 | 1_3:-15469896 | Msa0106280:intron |
| AGGGTACTTGAGGAAAGTTG+AGG | 0.629346 | 1_3:+15471276 | None:intergenic |
| TGTGCTAAAAGCTTCTTCTG+GGG | 0.630783 | 1_3:-15471135 | Msa0106280:CDS |
| CCATGCATACGCCAAACACA+GGG | 0.642043 | 1_3:+15469483 | None:intergenic |
| CCGAAATGACGAGCTAACGG+TGG | 0.647064 | 1_3:-15469848 | Msa0106280:CDS |
| TTGGAAGTGAATTCAAAGCA+AGG | 0.647115 | 1_3:-15471110 | Msa0106280:CDS |
| TGCATGGGAGAGGCTTTCGG+CGG | 0.661975 | 1_3:-15469452 | Msa0106280:intron |
| ATGAACTTGAAGTAACAGCA+TGG | 0.667142 | 1_3:-15468714 | Msa0106280:CDS |
| GGAGATTCGAGAAATGAATG+TGG | 0.672717 | 1_3:+15471344 | None:intergenic |
| AAAGATATGCCTGAATCTTG+AGG | 0.685103 | 1_3:+15469536 | None:intergenic |
| GAAAGTTGAGGAGATTGATG+AGG | 0.691759 | 1_3:+15471288 | None:intergenic |
| GAGGAGTGCTGATATCACCT+GGG | 0.710470 | 1_3:-15469701 | Msa0106280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCTTTCATTTAATTAA+TGG | - | chr1_3:15468034-15468053 | Msa0106280:intron | 10.0% |
| !!! | AAATTATTTGTGTTTTTTTA+CGG | - | chr1_3:15468178-15468197 | Msa0106280:intron | 10.0% |
| !!! | TTTAATTTCACATTAAATTT+AGG | + | chr1_3:15468908-15468927 | None:intergenic | 10.0% |
| !!! | AAAATTTTACATTGAATTAT+AGG | + | chr1_3:15469666-15469685 | None:intergenic | 10.0% |
| !!! | TTCTTTTTATTAATTCTATT+TGG | + | chr1_3:15471224-15471243 | None:intergenic | 10.0% |
| !! | TTAATAAAAAGAAGAATAAT+AGG | - | chr1_3:15471231-15471250 | Msa0106280:intron | 10.0% |
| !! | AAAGAACATTATTGATAAAA+GGG | + | chr1_3:15467756-15467775 | None:intergenic | 15.0% |
| !! | AAAAGAACATTATTGATAAA+AGG | + | chr1_3:15467757-15467776 | None:intergenic | 15.0% |
| !! | TTCATTTAATTAATGGTTAA+TGG | - | chr1_3:15468041-15468060 | Msa0106280:intron | 15.0% |
| !!! | GTTACAATTTTTTCTTTTTT+CGG | + | chr1_3:15469636-15469655 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAAACCTACTT+TGG | + | chr1_3:15469949-15469968 | None:intergenic | 15.0% |
| !!! | AAAGTAGGTTTTAATTTTTA+TGG | - | chr1_3:15469948-15469967 | Msa0106280:intron | 15.0% |
| !!! | ATGGTTTTAAATTACATTTA+TGG | - | chr1_3:15469967-15469986 | Msa0106280:intron | 15.0% |
| !!! | GAATTTTTATTGCAGATTTA+CGG | - | chr1_3:15467810-15467829 | Msa0106280:three_prime_UTR | 20.0% |
| !! | TAGTTATCAATAACAACAAT+TGG | + | chr1_3:15467941-15467960 | None:intergenic | 20.0% |
| !!! | GAATATGAGTACATAATTTT+TGG | - | chr1_3:15468117-15468136 | Msa0106280:intron | 20.0% |
| !!! | TTGAATTAGAAAAAGTATTG+TGG | - | chr1_3:15468285-15468304 | Msa0106280:intron | 20.0% |
| !! | TGCAAAATTCAATGTATTTA+GGG | + | chr1_3:15468482-15468501 | None:intergenic | 20.0% |
| !! | TTGCAAAATTCAATGTATTT+AGG | + | chr1_3:15468483-15468502 | None:intergenic | 20.0% |
| !!! | AATTCAAAGTCAATGTTTTA+GGG | + | chr1_3:15468558-15468577 | None:intergenic | 20.0% |
| !!! | TAATTCAAAGTCAATGTTTT+AGG | + | chr1_3:15468559-15468578 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATTGTACTTG+TGG | - | chr1_3:15469030-15469049 | Msa0106280:intron | 20.0% |
| !!! | ATCTGTTCTTTTTAGAAAAT+CGG | - | chr1_3:15469056-15469075 | Msa0106280:intron | 20.0% |
| !!! | TTATTGATGAAACTGTTTTT+GGG | - | chr1_3:15469195-15469214 | Msa0106280:intron | 20.0% |
| !!! | TCTGTTTTATTATTTTGAAC+AGG | - | chr1_3:15469260-15469279 | Msa0106280:intron | 20.0% |
| !!! | ATAATCGAAAATTTTGAAGA+AGG | + | chr1_3:15469333-15469352 | None:intergenic | 20.0% |
| !! | ATTTATATTGAGGTAAAATG+CGG | - | chr1_3:15470010-15470029 | Msa0106280:intron | 20.0% |
| !! | TCTTAACATGCATTTATATT+AGG | - | chr1_3:15470442-15470461 | Msa0106280:intron | 20.0% |
| !! | ATAATAGTAATCACATGTAA+CGG | + | chr1_3:15470578-15470597 | None:intergenic | 20.0% |
| !! | TATTAAACTAGTAGATTAAC+TGG | - | chr1_3:15470640-15470659 | Msa0106280:intron | 20.0% |
| !! | TTAACTTCATTATTCATACA+CGG | - | chr1_3:15470681-15470700 | Msa0106280:intron | 20.0% |
| !!! | TATTTTGACTATTTGAGTAA+AGG | + | chr1_3:15470771-15470790 | None:intergenic | 20.0% |
| !! | AACAATTCCTATAGATTTAA+GGG | + | chr1_3:15471335-15471354 | None:intergenic | 20.0% |
| ! | ACAATTACAAACAACAACAA+TGG | - | chr1_3:15467624-15467643 | Msa0106280:three_prime_UTR | 25.0% |
| !! | AAAAGGGTGTATGAATAAAA+GGG | + | chr1_3:15467740-15467759 | None:intergenic | 25.0% |
| !! | TAAAAGGGTGTATGAATAAA+AGG | + | chr1_3:15467741-15467760 | None:intergenic | 25.0% |
| ! | AATAACAACAATTGGATCAT+TGG | + | chr1_3:15467933-15467952 | None:intergenic | 25.0% |
| !!! | ATTCAAAGTCAATGTTTTAG+GGG | + | chr1_3:15468557-15468576 | None:intergenic | 25.0% |
| !!! | ATAAACTTGGTTCTTTTGAA+GGG | + | chr1_3:15468723-15468742 | None:intergenic | 25.0% |
| !!! | AATAAACTTGGTTCTTTTGA+AGG | + | chr1_3:15468724-15468743 | None:intergenic | 25.0% |
| ! | AAAGAACCAAGTTTATTTGT+TGG | - | chr1_3:15468727-15468746 | Msa0106280:CDS | 25.0% |
| !! | TCATTTACGTTTGAAGTATA+TGG | - | chr1_3:15469095-15469114 | Msa0106280:CDS | 25.0% |
| !! | CATTTACGTTTGAAGTATAT+GGG | - | chr1_3:15469096-15469115 | Msa0106280:CDS | 25.0% |
| !! | ATTTACGTTTGAAGTATATG+GGG | - | chr1_3:15469097-15469116 | Msa0106280:CDS | 25.0% |
| ! | CAAAAACAGTTTCATCAATA+AGG | + | chr1_3:15469196-15469215 | None:intergenic | 25.0% |
| !! | CTTATTGATGAAACTGTTTT+TGG | - | chr1_3:15469194-15469213 | Msa0106280:intron | 25.0% |
| ! | AGAAAGTTTCTTATTACATC+AGG | + | chr1_3:15469243-15469262 | None:intergenic | 25.0% |
| ! | TAGTTCATTAATCGTGTTTA+AGG | + | chr1_3:15469389-15469408 | None:intergenic | 25.0% |
| ! | AAGAAAAAATTGTAACGAAC+AGG | - | chr1_3:15469640-15469659 | Msa0106280:intron | 25.0% |
| ! | AACGGTAAAAGTTAAAATGT+AGG | + | chr1_3:15469750-15469769 | None:intergenic | 25.0% |
| ! | GGTAAAATGCATTTATATTG+AGG | - | chr1_3:15470000-15470019 | Msa0106280:intron | 25.0% |
| !!! | CAGAAGCATTTAAAAATGAA+CGG | + | chr1_3:15470157-15470176 | None:intergenic | 25.0% |
| ! | TAGATTAACTGGTTAAGTTA+CGG | - | chr1_3:15470651-15470670 | Msa0106280:intron | 25.0% |
| ! | ATAGTCAAAATAGTTGAACT+TGG | - | chr1_3:15470779-15470798 | Msa0106280:intron | 25.0% |
| ! | TAATAAAGTCGAATACAACA+GGG | + | chr1_3:15470864-15470883 | None:intergenic | 25.0% |
| ! | AACAATGTGAAAGATAAGAT+AGG | + | chr1_3:15470922-15470941 | None:intergenic | 25.0% |
| !! | ATCTTAGCATTCAATGATTT+TGG | - | chr1_3:15470965-15470984 | Msa0106280:intron | 25.0% |
| !!! | ATGATTTTGGTTTAAAGAGT+TGG | - | chr1_3:15470978-15470997 | Msa0106280:intron | 25.0% |
| ! | TTTAAAGAGTTGGAATCTTA+GGG | - | chr1_3:15470988-15471007 | Msa0106280:intron | 25.0% |
| ! | AAGTTTAGTATGTGAGAAAA+GGG | + | chr1_3:15471033-15471052 | None:intergenic | 25.0% |
| ! | AAAGTTTAGTATGTGAGAAA+AGG | + | chr1_3:15471034-15471053 | None:intergenic | 25.0% |
| ! | AGAATTTCCCTTAAATCTAT+AGG | - | chr1_3:15471325-15471344 | Msa0106280:CDS | 25.0% |
| ! | CAACAATTCCTATAGATTTA+AGG | + | chr1_3:15471336-15471355 | None:intergenic | 25.0% |
| !! | TATGAATAAAAGGGTACTTG+AGG | + | chr1_3:15467731-15467750 | None:intergenic | 30.0% |
| AACAATTGGATCATTGGATT+TGG | + | chr1_3:15467927-15467946 | None:intergenic | 30.0% | |
| CTTTACCTATAATCTTTGTC+AGG | - | chr1_3:15467967-15467986 | Msa0106280:intron | 30.0% | |
| ACAAACCTGACAAAGATTAT+AGG | + | chr1_3:15467975-15467994 | None:intergenic | 30.0% | |
| !! | GGTTAAAGTGTTTTAAATCG+TGG | - | chr1_3:15468306-15468325 | Msa0106280:intron | 30.0% |
| ! | GAAGGGTAACATTTTCAAAT+GGG | + | chr1_3:15468706-15468725 | None:intergenic | 30.0% |
| ! | TGAAGGGTAACATTTTCAAA+TGG | + | chr1_3:15468707-15468726 | None:intergenic | 30.0% |
| AGTTTAACACTGGATTAACA+TGG | - | chr1_3:15468823-15468842 | Msa0106280:intron | 30.0% | |
| ATTGCACTTCTCTTTAAACA+AGG | + | chr1_3:15468984-15469003 | None:intergenic | 30.0% | |
| ! | TTTACGTTTGAAGTATATGG+GGG | - | chr1_3:15469098-15469117 | Msa0106280:CDS | 30.0% |
| AATCAATTCTTTGTAATCCC+AGG | - | chr1_3:15469573-15469592 | Msa0106280:intron | 30.0% | |
| ATCAATTCTTTGTAATCCCA+GGG | - | chr1_3:15469574-15469593 | Msa0106280:intron | 30.0% | |
| CATGTCATTCATCATTAACT+CGG | - | chr1_3:15469699-15469718 | Msa0106280:CDS | 30.0% | |
| ATGTTGTCATTGAGATGAAA+CGG | + | chr1_3:15469768-15469787 | None:intergenic | 30.0% | |
| AAGTCTTGATCGTATTGTAA+TGG | + | chr1_3:15469811-15469830 | None:intergenic | 30.0% | |
| ATTACAATACGATCAAGACT+TGG | - | chr1_3:15469810-15469829 | Msa0106280:intron | 30.0% | |
| CTGGTTTATTATGATGAGAA+AGG | - | chr1_3:15469898-15469917 | Msa0106280:intron | 30.0% | |
| TCTCAAAAATCCCTATATTG+TGG | - | chr1_3:15470068-15470087 | Msa0106280:intron | 30.0% | |
| ! | TTCTGAGCTCTGATATAATT+TGG | - | chr1_3:15470172-15470191 | Msa0106280:intron | 30.0% |
| !! | ATGCGATTTTGGTCTATTTT+AGG | - | chr1_3:15470416-15470435 | Msa0106280:intron | 30.0% |
| TTCTTTCTGACAGTCAATAA+AGG | - | chr1_3:15470736-15470755 | Msa0106280:intron | 30.0% | |
| CTTGGTTCATTATTGATATG+CGG | - | chr1_3:15470797-15470816 | Msa0106280:intron | 30.0% | |
| GTAATAAAGTCGAATACAAC+AGG | + | chr1_3:15470865-15470884 | None:intergenic | 30.0% | |
| GTTTAAAGAGTTGGAATCTT+AGG | - | chr1_3:15470987-15471006 | Msa0106280:intron | 30.0% | |
| TTTCATTTGTTTGCAACTAC+AGG | - | chr1_3:15471052-15471071 | Msa0106280:CDS | 30.0% | |
| TTCATTTGTTTGCAACTACA+GGG | - | chr1_3:15471053-15471072 | Msa0106280:CDS | 30.0% | |
| TGTGAAGCTTATAGAGAAAA+AGG | - | chr1_3:15471136-15471155 | Msa0106280:CDS | 30.0% | |
| TACAATTCTGAATCAAATCG+TGG | - | chr1_3:15471275-15471294 | Msa0106280:intron | 30.0% | |
| TATTGCAGATTTACGGTTTG+AGG | - | chr1_3:15467817-15467836 | Msa0106280:three_prime_UTR | 35.0% | |
| TTGTGCTAAAAGCTTCTTCT+GGG | - | chr1_3:15467858-15467877 | Msa0106280:CDS | 35.0% | |
| TTGGAAGTGAATTCAAAGCA+AGG | - | chr1_3:15467884-15467903 | Msa0106280:CDS | 35.0% | |
| ! | GAATTCAAAGCAAGGTGTTT+CGG | - | chr1_3:15467892-15467911 | Msa0106280:CDS | 35.0% |
| !!! | GTGTTTTTTTACGGCGAAAT+TGG | - | chr1_3:15468187-15468206 | Msa0106280:intron | 35.0% |
| !!! | TTTTTTACGGCGAAATTGGT+TGG | - | chr1_3:15468191-15468210 | Msa0106280:intron | 35.0% |
| ACGTTATGATCGTTAACGTT+AGG | - | chr1_3:15468337-15468356 | Msa0106280:intron | 35.0% | |
| CGTTATGATCGTTAACGTTA+GGG | - | chr1_3:15468338-15468357 | Msa0106280:intron | 35.0% | |
| GTTATGATCGTTAACGTTAG+GGG | - | chr1_3:15468339-15468358 | Msa0106280:intron | 35.0% | |
| ! | CCACACATTCAAGGATTTTT+GGG | + | chr1_3:15468412-15468431 | None:intergenic | 35.0% |
| CCAAAAATCCTTGAATGTGT+GGG | - | chr1_3:15468410-15468429 | Msa0106280:intron | 35.0% | |
| CAAAAATCCTTGAATGTGTG+GGG | - | chr1_3:15468411-15468430 | Msa0106280:intron | 35.0% | |
| ! | GAACCAAGTTTATTTGTTGG+CGG | - | chr1_3:15468730-15468749 | Msa0106280:CDS | 35.0% |
| ! | AACCAAGTTTATTTGTTGGC+GGG | - | chr1_3:15468731-15468750 | Msa0106280:CDS | 35.0% |
| ! | GTATGAAATCAGCTTTAGCT+GGG | - | chr1_3:15468753-15468772 | Msa0106280:CDS | 35.0% |
| ! | TATGAAATCAGCTTTAGCTG+GGG | - | chr1_3:15468754-15468773 | Msa0106280:CDS | 35.0% |
| ! | TTTTGATGCTCCTATGGTAA+AGG | - | chr1_3:15468791-15468810 | Msa0106280:intron | 35.0% |
| TTTGATGCTCCTATGGTAAA+GGG | - | chr1_3:15468792-15468811 | Msa0106280:intron | 35.0% | |
| TAACATGGCAACGGAAAATA+TGG | - | chr1_3:15468838-15468857 | Msa0106280:intron | 35.0% | |
| GCAAACAATGTTACATTAGG+AGG | + | chr1_3:15469424-15469443 | None:intergenic | 35.0% | |
| GGAGCAAACAATGTTACATT+AGG | + | chr1_3:15469427-15469446 | None:intergenic | 35.0% | |
| TAACATTGTTTGCTCCTTAC+AGG | - | chr1_3:15469431-15469450 | Msa0106280:intron | 35.0% | |
| AAAGATATGCCTGAATCTTG+AGG | + | chr1_3:15469461-15469480 | None:intergenic | 35.0% | |
| ! | TTGCAAACAGTTTTCGAACT+TGG | - | chr1_3:15469479-15469498 | Msa0106280:CDS | 35.0% |
| !! | CACTTTTAGAAGTTTTCCCT+GGG | + | chr1_3:15469593-15469612 | None:intergenic | 35.0% |
| !! | TCACTTTTAGAAGTTTTCCC+TGG | + | chr1_3:15469594-15469613 | None:intergenic | 35.0% |
| !!! | AACTCGGCTTTCTTTTTCAA+TGG | - | chr1_3:15469715-15469734 | Msa0106280:CDS | 35.0% |
| AAAATTATTCGTGCTCCTTC+TGG | - | chr1_3:15469853-15469872 | Msa0106280:CDS | 35.0% | |
| TATGATGAGAAAGGAGAAGA+TGG | - | chr1_3:15469907-15469926 | Msa0106280:intron | 35.0% | |
| TACATTTATGGTCGCAATTG+CGG | - | chr1_3:15469979-15469998 | Msa0106280:intron | 35.0% | |
| TATCATTTGCAGTCCTTTCT+TGG | - | chr1_3:15470209-15470228 | Msa0106280:intron | 35.0% | |
| ! | TCACAGCCTTGTAATTGAAA+AGG | - | chr1_3:15470242-15470261 | Msa0106280:intron | 35.0% |
| ! | AGCTCTCCTTTTCAATTACA+AGG | + | chr1_3:15470251-15470270 | None:intergenic | 35.0% |
| ! | GTTACTTCAAGTTCATCATC+AGG | + | chr1_3:15470276-15470295 | None:intergenic | 35.0% |
| ATGAACTTGAAGTAACAGCA+TGG | - | chr1_3:15470280-15470299 | Msa0106280:intron | 35.0% | |
| TCATGACAGATAAGTACAAC+AGG | + | chr1_3:15470375-15470394 | None:intergenic | 35.0% | |
| CTATAAGCTTCACAAAGTTG+CGG | + | chr1_3:15471130-15471149 | None:intergenic | 35.0% | |
| CTGAATTACTGTTCGAAGTT+CGG | - | chr1_3:15471194-15471213 | Msa0106280:intron | 35.0% | |
| GGAGATTCGAGAAATGAATG+TGG | + | chr1_3:15467653-15467672 | None:intergenic | 40.0% | |
| ! | AGATGGGTTTGGTTGAAGAA+GGG | + | chr1_3:15467674-15467693 | None:intergenic | 40.0% |
| GAAAGTTGAGGAGATTGATG+AGG | + | chr1_3:15467709-15467728 | None:intergenic | 40.0% | |
| ! | ATTTACGGTTTGAGGCCAAA+AGG | - | chr1_3:15467825-15467844 | Msa0106280:exon | 40.0% |
| ! | TTTACGGTTTGAGGCCAAAA+GGG | - | chr1_3:15467826-15467845 | Msa0106280:exon | 40.0% |
| GTTGTGCTAAAAGCTTCTTC+TGG | - | chr1_3:15467857-15467876 | Msa0106280:CDS | 40.0% | |
| TGTGCTAAAAGCTTCTTCTG+GGG | - | chr1_3:15467859-15467878 | Msa0106280:CDS | 40.0% | |
| CCCAAAAATCCTTGAATGTG+TGG | - | chr1_3:15468409-15468428 | Msa0106280:intron | 40.0% | |
| ! | CCCACACATTCAAGGATTTT+TGG | + | chr1_3:15468413-15468432 | None:intergenic | 40.0% |
| ! | CTACAACATCAAGGTTTTCG+AGG | + | chr1_3:15468618-15468637 | None:intergenic | 40.0% |
| TACCCGCCAACAAATAAACT+TGG | + | chr1_3:15468736-15468755 | None:intergenic | 40.0% | |
| ! | GGTATGAAATCAGCTTTAGC+TGG | - | chr1_3:15468752-15468771 | Msa0106280:CDS | 40.0% |
| TTGATGCTCCTATGGTAAAG+GGG | - | chr1_3:15468793-15468812 | Msa0106280:intron | 40.0% | |
| TAACTCTTCCCCTTTACCAT+AGG | + | chr1_3:15468804-15468823 | None:intergenic | 40.0% | |
| ! | GGGAAGAGTTAGTTTAACAC+TGG | - | chr1_3:15468813-15468832 | Msa0106280:intron | 40.0% |
| ACACTGGATTAACATGGCAA+CGG | - | chr1_3:15468829-15468848 | Msa0106280:intron | 40.0% | |
| TTGAACAGGAAAAATCCGAG+AGG | - | chr1_3:15469274-15469293 | Msa0106280:intron | 40.0% | |
| TGAAGAAGGCAATCTTTACC+TGG | + | chr1_3:15469319-15469338 | None:intergenic | 40.0% | |
| ! | AATCTTGAGGTGTTCCTGTA+AGG | + | chr1_3:15469448-15469467 | None:intergenic | 40.0% |
| !! | TTGGTTCTTTTATCTCGTGC+AGG | - | chr1_3:15469829-15469848 | Msa0106280:intron | 40.0% |
| ! | TGGTTCTTTTATCTCGTGCA+GGG | - | chr1_3:15469830-15469849 | Msa0106280:intron | 40.0% |
| CCACAATGATATCGCAATTG+TGG | + | chr1_3:15470045-15470064 | None:intergenic | 40.0% | |
| CCACAATTGCGATATCATTG+TGG | - | chr1_3:15470042-15470061 | Msa0106280:intron | 40.0% | |
| TGATATCTTCCAGCCAAGAA+AGG | + | chr1_3:15470225-15470244 | None:intergenic | 40.0% | |
| GACTGAAGATGGTCTCATAA+TGG | - | chr1_3:15470302-15470321 | Msa0106280:intron | 40.0% | |
| CTGCTCGTCACAAGAAATAT+CGG | - | chr1_3:15470325-15470344 | Msa0106280:intron | 40.0% | |
| CAAGAAATATCGGCATATGC+AGG | - | chr1_3:15470335-15470354 | Msa0106280:intron | 40.0% | |
| AATCGCATCTGATCCTTTCT+TGG | + | chr1_3:15470404-15470423 | None:intergenic | 40.0% | |
| ! | GAAAGGATCAGATGCGATTT+TGG | - | chr1_3:15470405-15470424 | Msa0106280:intron | 40.0% |
| ! | GAAGTGTCAGTGTTACATGA+AGG | + | chr1_3:15470493-15470512 | None:intergenic | 40.0% |
| GTATACTGGTGTAGCTTCTA+TGG | + | chr1_3:15470838-15470857 | None:intergenic | 40.0% | |
| ATACAACAGGGTAGGTATAC+TGG | + | chr1_3:15470852-15470871 | None:intergenic | 40.0% | |
| AAAGTCGAATACAACAGGGT+AGG | + | chr1_3:15470860-15470879 | None:intergenic | 40.0% | |
| ATTCTGAATCAAATCGTGGC+AGG | - | chr1_3:15471279-15471298 | Msa0106280:intron | 40.0% | |
| TTCTGAATCAAATCGTGGCA+GGG | - | chr1_3:15471280-15471299 | Msa0106280:intron | 40.0% | |
| ! | GAGATGGGTTTGGTTGAAGA+AGG | + | chr1_3:15467675-15467694 | None:intergenic | 45.0% |
| ! | GAAAGAGAGAGAGATGGGTT+TGG | + | chr1_3:15467685-15467704 | None:intergenic | 45.0% |
| GAGGTGAAAGAGAGAGAGAT+GGG | + | chr1_3:15467690-15467709 | None:intergenic | 45.0% | |
| TGAGGTGAAAGAGAGAGAGA+TGG | + | chr1_3:15467691-15467710 | None:intergenic | 45.0% | |
| ! | AGGGTACTTGAGGAAAGTTG+AGG | + | chr1_3:15467721-15467740 | None:intergenic | 45.0% |
| ! | TTACGGTTTGAGGCCAAAAG+GGG | - | chr1_3:15467827-15467846 | Msa0106280:exon | 45.0% |
| ! | TTTGAGGCCAAAAGGGGAAA+AGG | - | chr1_3:15467833-15467852 | Msa0106280:exon | 45.0% |
| TTGAGGCCAAAAGGGGAAAA+GGG | - | chr1_3:15467834-15467853 | Msa0106280:exon | 45.0% | |
| !! | AAAAGCTTCTTCTGGGGCAT+TGG | - | chr1_3:15467865-15467884 | Msa0106280:CDS | 45.0% |
| ! | GCTATTTCCCCACACATTCA+AGG | + | chr1_3:15468421-15468440 | None:intergenic | 45.0% |
| GTTACGCAACAATCACAGCA+GGG | + | chr1_3:15468446-15468465 | None:intergenic | 45.0% | |
| TGTTACGCAACAATCACAGC+AGG | + | chr1_3:15468447-15468466 | None:intergenic | 45.0% | |
| GCTGTGATTGTTGCGTAACA+TGG | - | chr1_3:15468447-15468466 | Msa0106280:intron | 45.0% | |
| CTGTCACGACACAATTAAGG+CGG | + | chr1_3:15468519-15468538 | None:intergenic | 45.0% | |
| GCCTTAATTGTGTCGTGACA+GGG | - | chr1_3:15468518-15468537 | Msa0106280:intron | 45.0% | |
| ACCCTGTCACGACACAATTA+AGG | + | chr1_3:15468522-15468541 | None:intergenic | 45.0% | |
| TGCAATGCCGTGTCATGATA+TGG | - | chr1_3:15468583-15468602 | Msa0106280:intron | 45.0% | |
| CACAAGTGGCTACAACATCA+AGG | + | chr1_3:15468627-15468646 | None:intergenic | 45.0% | |
| CACATTCGACAACTCACAAG+TGG | + | chr1_3:15468641-15468660 | None:intergenic | 45.0% | |
| !! | CTTCGCTTTTGATGCTCCTA+TGG | - | chr1_3:15468785-15468804 | Msa0106280:intron | 45.0% |
| TTGAAGTATATGGGGGAGCT+AGG | - | chr1_3:15469105-15469124 | Msa0106280:CDS | 45.0% | |
| GGAGCTAGGATTTCACTTTG+AGG | - | chr1_3:15469119-15469138 | Msa0106280:CDS | 45.0% | |
| CTACCGAAATGACGAGCTAA+CGG | - | chr1_3:15469143-15469162 | Msa0106280:CDS | 45.0% | |
| TAACGGTGGAGGAGTTGAAA+AGG | - | chr1_3:15469160-15469179 | Msa0106280:intron | 45.0% | |
| ACAGGAACACCTCAAGATTC+AGG | - | chr1_3:15469449-15469468 | Msa0106280:intron | 45.0% | |
| ATGCATGGGATTACAGTGCA+TGG | - | chr1_3:15469526-15469545 | Msa0106280:CDS | 45.0% | |
| TGCATGGGATTACAGTGCAT+GGG | - | chr1_3:15469527-15469546 | Msa0106280:CDS | 45.0% | |
| GACAACATCATTTCTTCCCC+TGG | - | chr1_3:15469780-15469799 | Msa0106280:intron | 45.0% | |
| GATGCATGGGAAAAGTTCTC+TGG | - | chr1_3:15469879-15469898 | Msa0106280:CDS | 45.0% | |
| !! | GGAGAAGATGGATTACTTGC+TGG | - | chr1_3:15469919-15469938 | Msa0106280:intron | 45.0% |
| ! | ACTTGCTGGACTACCAAAGT+AGG | - | chr1_3:15469933-15469952 | Msa0106280:intron | 45.0% |
| ACAATCGCGGCCACAATATA+GGG | + | chr1_3:15470081-15470100 | None:intergenic | 45.0% | |
| ATTTGCAGTCCTTTCTTGGC+TGG | - | chr1_3:15470213-15470232 | Msa0106280:intron | 45.0% | |
| ! | GTAACAGCATGGACTGAAGA+TGG | - | chr1_3:15470291-15470310 | Msa0106280:intron | 45.0% |
| ! | GTCATGATAGCGTCCAAGAA+AGG | - | chr1_3:15470388-15470407 | Msa0106280:intron | 45.0% |
| TCACATGTAACGGCGTCTAT+CGG | + | chr1_3:15470568-15470587 | None:intergenic | 45.0% | |
| AGAGTTGGAATCTTAGGGTC+TGG | - | chr1_3:15470993-15471012 | Msa0106280:intron | 45.0% | |
| !!! | TTATTTTCTTAAATTATTAT+CGG | - | chr1_3:15470594-15470613 | Msa0106280:intron | 5.0% |
| TGAGGCCAAAAGGGGAAAAG+GGG | - | chr1_3:15467835-15467854 | Msa0106280:exon | 50.0% | |
| ! | CACAACCCCTTTTCCCCTTT+TGG | + | chr1_3:15467843-15467862 | None:intergenic | 50.0% |
| CGCCTTAATTGTGTCGTGAC+AGG | - | chr1_3:15468517-15468536 | Msa0106280:intron | 50.0% | |
| TCCGCGACCATATCATGACA+CGG | + | chr1_3:15468593-15468612 | None:intergenic | 50.0% | |
| GAGTTGTCGAATGTGCAGCA+AGG | - | chr1_3:15468646-15468665 | Msa0106280:intron | 50.0% | |
| TGCAGCAAGGCGAGGTTTAA+CGG | - | chr1_3:15468659-15468678 | Msa0106280:intron | 50.0% | |
| CCACCGTTAGCTCGTCATTT+CGG | + | chr1_3:15469149-15469168 | None:intergenic | 50.0% | |
| AAATGACGAGCTAACGGTGG+AGG | - | chr1_3:15469149-15469168 | Msa0106280:intron | 50.0% | |
| GGTGATATCAGCACTCCTCT+CGG | + | chr1_3:15469292-15469311 | None:intergenic | 50.0% | |
| !! | AGAGGAGTGCTGATATCACC+TGG | - | chr1_3:15469292-15469311 | Msa0106280:intron | 50.0% |
| !! | GAGGAGTGCTGATATCACCT+GGG | - | chr1_3:15469293-15469312 | Msa0106280:intron | 50.0% |
| GGACCAACTATCCCTGTGTT+TGG | - | chr1_3:15469500-15469519 | Msa0106280:CDS | 50.0% | |
| ACGCCAAACACAGGGATAGT+TGG | + | chr1_3:15469506-15469525 | None:intergenic | 50.0% | |
| CCATGCATACGCCAAACACA+GGG | + | chr1_3:15469514-15469533 | None:intergenic | 50.0% | |
| CCTGTGTTTGGCGTATGCAT+GGG | - | chr1_3:15469512-15469531 | Msa0106280:CDS | 50.0% | |
| ACATCATTTCTTCCCCTGGC+TGG | - | chr1_3:15469784-15469803 | Msa0106280:intron | 50.0% | |
| CATCATTTCTTCCCCTGGCT+GGG | - | chr1_3:15469785-15469804 | Msa0106280:intron | 50.0% | |
| TATTGTAATGGCCCAGCCAG+GGG | + | chr1_3:15469799-15469818 | None:intergenic | 50.0% | |
| GTATTGTAATGGCCCAGCCA+GGG | + | chr1_3:15469800-15469819 | None:intergenic | 50.0% | |
| CTCCTTCTGGTGTGATGCAT+GGG | - | chr1_3:15469866-15469885 | Msa0106280:CDS | 50.0% | |
| TTCCCATGCATCACACCAGA+AGG | + | chr1_3:15469871-15469890 | None:intergenic | 50.0% | |
| CACAATCGCGGCCACAATAT+AGG | + | chr1_3:15470082-15470101 | None:intergenic | 50.0% | |
| CTATATTGTGGCCGCGATTG+TGG | - | chr1_3:15470080-15470099 | Msa0106280:intron | 50.0% | |
| TCAGGGGTAATGATGCTCTC+TGG | + | chr1_3:15471092-15471111 | None:intergenic | 50.0% | |
| !! | GAGAGCATCATTACCCCTGA+CGG | - | chr1_3:15471092-15471111 | Msa0106280:CDS | 50.0% |
| CGTGGCAGGGAAAAGAAACT+TGG | - | chr1_3:15471293-15471312 | Msa0106280:CDS | 50.0% | |
| GCCGTGTCATGATATGGTCG+CGG | - | chr1_3:15468589-15468608 | Msa0106280:intron | 55.0% | |
| CCGAAATGACGAGCTAACGG+TGG | - | chr1_3:15469146-15469165 | Msa0106280:CDS | 55.0% | |
| AGGCAATCTTTACCTGGCCC+AGG | + | chr1_3:15469313-15469332 | None:intergenic | 55.0% | |
| CCCTGTGTTTGGCGTATGCA+TGG | - | chr1_3:15469511-15469530 | Msa0106280:CDS | 55.0% | |
| CCCATGCATACGCCAAACAC+AGG | + | chr1_3:15469515-15469534 | None:intergenic | 55.0% | |
| GGGATTACAGTGCATGGGAG+AGG | - | chr1_3:15469532-15469551 | Msa0106280:CDS | 55.0% | |
| CAGTGCATGGGAGAGGCTTT+CGG | - | chr1_3:15469539-15469558 | Msa0106280:CDS | 55.0% | |
| CGTATTGTAATGGCCCAGCC+AGG | + | chr1_3:15469801-15469820 | None:intergenic | 55.0% | |
| GCTCCTTCTGGTGTGATGCA+TGG | - | chr1_3:15469865-15469884 | Msa0106280:CDS | 55.0% | |
| GCAGTACGCAACCACAATCG+CGG | + | chr1_3:15470094-15470113 | None:intergenic | 55.0% | |
| GACAATCGTCTTGCCGTCAG+GGG | + | chr1_3:15471108-15471127 | None:intergenic | 55.0% | |
| GGACAATCGTCTTGCCGTCA+GGG | + | chr1_3:15471109-15471128 | None:intergenic | 55.0% | |
| GTCGAATGTGCAGCAAGGCG+AGG | - | chr1_3:15468651-15468670 | Msa0106280:intron | 60.0% | |
| ! | GTGCTGATATCACCTGGGCC+AGG | - | chr1_3:15469298-15469317 | Msa0106280:intron | 60.0% |
| TGCATGGGAGAGGCTTTCGG+CGG | - | chr1_3:15469542-15469561 | Msa0106280:CDS | 60.0% | |
| CGGACAATCGTCTTGCCGTC+AGG | + | chr1_3:15471110-15471129 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 15467615 | 15471401 | 15467615 | ID=Msa0106280;Name=Msa0106280 |
| chr1_3 | mRNA | 15467615 | 15471401 | 15467615 | ID=Msa0106280-mRNA-1;Parent=Msa0106280;Name=Msa0106280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=28|1|1|1|1|1|8|226|270 |
| chr1_3 | exon | 15467615 | 15467942 | 15467615 | ID=Msa0106280-mRNA-1:exon:5922;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15468660 | 15468795 | 15468660 | ID=Msa0106280-mRNA-1:exon:5921;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15469066 | 15469165 | 15469066 | ID=Msa0106280-mRNA-1:exon:5920;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15469453 | 15469563 | 15469453 | ID=Msa0106280-mRNA-1:exon:5919;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15469697 | 15469734 | 15469697 | ID=Msa0106280-mRNA-1:exon:5918;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15469835 | 15469905 | 15469835 | ID=Msa0106280-mRNA-1:exon:5917;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15471028 | 15471191 | 15471028 | ID=Msa0106280-mRNA-1:exon:5916;Parent=Msa0106280-mRNA-1 |
| chr1_3 | exon | 15471283 | 15471401 | 15471283 | ID=Msa0106280-mRNA-1:exon:5915;Parent=Msa0106280-mRNA-1 |
| chr1_3 | five_prime_UTR | 15471374 | 15471401 | 15471374 | ID=Msa0106280-mRNA-1:five_prime_utr;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15471283 | 15471373 | 15471283 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15471028 | 15471191 | 15471028 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15469835 | 15469905 | 15469835 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15469697 | 15469734 | 15469697 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15469453 | 15469563 | 15469453 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15469066 | 15469165 | 15469066 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15468660 | 15468795 | 15468660 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | CDS | 15467841 | 15467942 | 15467841 | ID=Msa0106280-mRNA-1:cds;Parent=Msa0106280-mRNA-1 |
| chr1_3 | three_prime_UTR | 15467615 | 15467840 | 15467615 | ID=Msa0106280-mRNA-1:three_prime_utr;Parent=Msa0106280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
