Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152840 | XP_013466655.1 | 87.129 | 303 | 6 | 1 | 1 | 303 | 1 | 270 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152840 | sp|Q42565|ASB1_ARATH | 62.379 | 311 | 71 | 4 | 1 | 302 | 1 | 274 | 3.12e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152840 | B7FJB9 | 87.129 | 303 | 6 | 1 | 1 | 303 | 1 | 270 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa0152840 | 0.801445 | 8.973182e-49 | -8.615850e-47 |
| Msa0061880 | Msa0152840 | 0.826824 | 2.193880e-54 | -8.615850e-47 |
| Msa0072170 | Msa0152840 | 0.820391 | 7.030089e-53 | -8.615850e-47 |
| Msa0094010 | Msa0152840 | 0.820035 | 8.484400e-53 | -8.615850e-47 |
| Msa0098390 | Msa0152840 | -0.800492 | 1.405192e-48 | -8.615850e-47 |
| Msa0106280 | Msa0152840 | 0.912282 | 2.327623e-83 | -8.615850e-47 |
| Msa0111330 | Msa0152840 | 0.833428 | 5.363964e-56 | -8.615850e-47 |
| Msa0120540 | Msa0152840 | 0.827088 | 1.897704e-54 | -8.615850e-47 |
| Msa0138970 | Msa0152840 | -0.810167 | 1.318682e-50 | -8.615850e-47 |
| Msa0152840 | Msa0164220 | 0.801556 | 8.517563e-49 | -8.615850e-47 |
| Msa0152840 | Msa0194970 | 0.802363 | 5.811900e-49 | -8.615850e-47 |
| Msa0152840 | Msa0212750 | -0.837123 | 6.257193e-57 | -8.615850e-47 |
| Msa0152840 | Msa0219250 | -0.807877 | 4.077226e-50 | -8.615850e-47 |
| Msa0152840 | Msa0222920 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa0152840 | Msa0258880 | -0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0152840 | Msa0295000 | -0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0152840 | Msa0302450 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0152840 | Msa0328210 | 0.808539 | 2.947292e-50 | -8.615850e-47 |
| Msa0152840 | Msa0374250 | 0.819240 | 1.288579e-52 | -8.615850e-47 |
| Msa0152840 | Msa0403190 | 0.816933 | 4.283296e-52 | -8.615850e-47 |
| Msa0152840 | Msa0431770 | 0.813359 | 2.664301e-51 | -8.615850e-47 |
| Msa0152840 | Msa0436200 | 0.810139 | 1.336941e-50 | -8.615850e-47 |
| Msa0152840 | Msa0437510 | 0.808063 | 3.723449e-50 | -8.615850e-47 |
| Msa0152840 | Msa0462990 | 0.805429 | 1.340510e-49 | -8.615850e-47 |
| Msa0152840 | Msa0469790 | 0.811374 | 7.229964e-51 | -8.615850e-47 |
| Msa0152840 | Msa0469910 | -0.840448 | 8.641876e-58 | -8.615850e-47 |
| Msa0152840 | Msa0525340 | 0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0152840 | Msa0578090 | 0.818964 | 1.488801e-52 | -8.615850e-47 |
| Msa0152840 | Msa0586850 | 0.816346 | 5.799868e-52 | -8.615850e-47 |
| Msa0152840 | Msa0609970 | 0.850588 | 1.540933e-60 | -8.615850e-47 |
| Msa0152840 | Msa0614990 | 0.807935 | 3.963557e-50 | -8.615850e-47 |
| Msa0152840 | Msa0615660 | 0.838808 | 2.307141e-57 | -8.615850e-47 |
| Msa0152840 | Msa0619180 | 0.814527 | 1.472093e-51 | -8.615850e-47 |
| Msa0152840 | Msa0619510 | 0.822173 | 2.729595e-53 | -8.615850e-47 |
| Msa0152840 | Msa0625790 | 0.801814 | 7.537721e-49 | -8.615850e-47 |
| Msa0152840 | Msa0626680 | 0.805854 | 1.092001e-49 | -8.615850e-47 |
| Msa0152840 | Msa0650620 | 0.830330 | 3.121237e-55 | -8.615850e-47 |
| Msa0152840 | Msa0659140 | 0.813519 | 2.457164e-51 | -8.615850e-47 |
| Msa0152840 | Msa0659600 | 0.810893 | 9.191265e-51 | -8.615850e-47 |
| Msa0152840 | Msa0664760 | 0.817510 | 3.176259e-52 | -8.615850e-47 |
| Msa0152840 | Msa0669850 | 0.801071 | 1.070208e-48 | -8.615850e-47 |
| Msa0152840 | Msa0704800 | 0.811126 | 8.183797e-51 | -8.615850e-47 |
| Msa0152840 | Msa0705600 | 0.805333 | 1.404229e-49 | -8.615850e-47 |
| Msa0152840 | Msa0707390 | 0.815158 | 1.066736e-51 | -8.615850e-47 |
| Msa0152840 | Msa0713460 | 0.815400 | 9.425597e-52 | -8.615850e-47 |
| Msa0152840 | Msa0793720 | 0.800654 | 1.302005e-48 | -8.615850e-47 |
| Msa0152840 | Msa0797750 | 0.812553 | 4.002112e-51 | -8.615850e-47 |
| Msa0152840 | Msa0814630 | -0.800035 | 1.740912e-48 | -8.615850e-47 |
| Msa0152840 | Msa0824640 | 0.807574 | 4.728702e-50 | -8.615850e-47 |
| Msa0152840 | Msa0864010 | 0.809786 | 1.592706e-50 | -8.615850e-47 |
| Msa0152840 | Msa0940830 | 0.805237 | 1.471051e-49 | -8.615850e-47 |
| Msa0152840 | Msa0947530 | -0.805484 | 1.305288e-49 | -8.615850e-47 |
| Msa0152840 | Msa0993530 | 0.806021 | 1.006970e-49 | -8.615850e-47 |
| Msa0152840 | Msa1022970 | 0.840085 | 1.074870e-57 | -8.615850e-47 |
| Msa0152840 | Msa1030930 | 0.801852 | 7.403708e-49 | -8.615850e-47 |
| Msa0152840 | Msa1061720 | 0.830586 | 2.701108e-55 | -8.615850e-47 |
| Msa0152840 | Msa1098720 | -0.830597 | 2.685489e-55 | -8.615850e-47 |
| Msa0152840 | Msa1109570 | 0.810380 | 1.186400e-50 | -8.615850e-47 |
| Msa0152840 | Msa1126120 | -0.827492 | 1.518322e-54 | -8.615850e-47 |
| Msa0152840 | Msa1133630 | 0.801489 | 8.788292e-49 | -8.615850e-47 |
| Msa0152840 | Msa1150500 | 0.838468 | 2.825719e-57 | -8.615850e-47 |
| Msa0152840 | Msa1173900 | 0.803440 | 3.482057e-49 | -8.615850e-47 |
| Msa0152840 | Msa1213770 | 0.813321 | 2.715992e-51 | -8.615850e-47 |
| Msa0152840 | Msa1246530 | -0.832349 | 9.947124e-56 | -8.615850e-47 |
| Msa0152840 | Msa1253810 | 0.826561 | 2.535950e-54 | -8.615850e-47 |
| Msa0152840 | Msa1373880 | 0.803722 | 3.044459e-49 | -8.615850e-47 |
| Msa0152840 | Msa1442220 | -0.804314 | 2.292140e-49 | -8.615850e-47 |
| Msa0152840 | Msa1449910 | 0.801474 | 8.850899e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152840 | MtrunA17_Chr1g0162011 | 87.129 | 303 | 6 | 1 | 1 | 303 | 1 | 270 | 0.0 | 528 |
| Msa0152840 | MtrunA17_Chr4g0057811 | 28.313 | 166 | 107 | 4 | 139 | 303 | 267 | 421 | 8.38e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152840 | AT1G25220.2 | 63.666 | 311 | 80 | 5 | 1 | 302 | 1 | 287 | 2.59e-135 | 385 |
| Msa0152840 | AT1G25220.1 | 62.379 | 311 | 71 | 4 | 1 | 302 | 1 | 274 | 3.17e-133 | 379 |
| Msa0152840 | AT1G24807.1 | 70.120 | 251 | 55 | 2 | 52 | 302 | 3 | 233 | 1.96e-129 | 368 |
| Msa0152840 | AT5G57890.1 | 61.564 | 307 | 77 | 4 | 1 | 302 | 1 | 271 | 1.93e-127 | 364 |
| Msa0152840 | AT1G24909.1 | 68.526 | 251 | 46 | 1 | 52 | 302 | 3 | 220 | 2.17e-127 | 362 |
| Msa0152840 | AT1G25083.1 | 68.526 | 251 | 46 | 1 | 52 | 302 | 3 | 220 | 2.17e-127 | 362 |
| Msa0152840 | AT1G25155.1 | 68.526 | 251 | 46 | 1 | 52 | 302 | 3 | 220 | 2.17e-127 | 362 |
| Msa0152840 | AT2G28880.1 | 27.957 | 279 | 109 | 12 | 71 | 291 | 88 | 332 | 1.61e-20 | 92.4 |
| Msa0152840 | AT3G27740.2 | 29.630 | 162 | 102 | 4 | 139 | 299 | 205 | 355 | 3.83e-13 | 69.7 |
| Msa0152840 | AT3G27740.1 | 29.268 | 164 | 104 | 4 | 139 | 301 | 277 | 429 | 6.05e-13 | 69.3 |
Find 83 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATTCCTATAGATTTA+AGG | 0.124314 | 1_4:-15815243 | None:intergenic |
| TATCATTTGCAGTCCTTTCT+TGG | 0.192637 | 1_4:+15814119 | Msa0152840:intron |
| TGTGAAGCTTATAGAGAAAA+AGG | 0.241377 | 1_4:+15815046 | Msa0152840:CDS |
| ATTTAAGGTTTGAGACAAAA+AGG | 0.275901 | 1_4:+15811741 | Msa0152840:CDS |
| AACAATTGGATCACTGGATT+TGG | 0.276099 | 1_4:-15811840 | None:intergenic |
| AAAATTATTCGTGCTCCTTC+TGG | 0.296696 | 1_4:+15813763 | Msa0152840:CDS |
| AACAATTCCTATAGATTTAA+GGG | 0.311033 | 1_4:-15815242 | None:intergenic |
| ACAAACCTGACAAAGATTAT+AGG | 0.326193 | 1_4:-15811888 | None:intergenic |
| AGAATTTCCCTTAAATCTAT+AGG | 0.339835 | 1_4:+15815235 | Msa0152840:three_prime_UTR |
| CATTTACGTTTGAAGTATAT+GGG | 0.344378 | 1_4:+15813007 | Msa0152840:intron |
| CCACCGTTAGCTCGTCATTT+CGG | 0.362383 | 1_4:-15813057 | None:intergenic |
| CTGAATTACTGTTCGAAGTT+CGG | 0.363514 | 1_4:+15815104 | Msa0152840:three_prime_UTR |
| CGGACAATCGTCTTGCCGTC+AGG | 0.372754 | 1_4:-15815017 | None:intergenic |
| GGAGAAGATGGATTACTTGC+TGG | 0.373096 | 1_4:+15813829 | Msa0152840:CDS |
| CAGTGCATGGGAGAGGCTTT+CGG | 0.382226 | 1_4:+15813450 | Msa0152840:CDS |
| GAGATGGGTTTGGTTGAAGA+AGG | 0.394691 | 1_4:-15811585 | None:intergenic |
| TGCAGCAAGGCGAGGTTTAA+CGG | 0.400481 | 1_4:+15812570 | Msa0152840:CDS |
| GAATTCAAAGCAAGGTGTTT+CGG | 0.400742 | 1_4:+15811808 | Msa0152840:CDS |
| ACAGGAACACCTCAAGATTC+AGG | 0.404227 | 1_4:+15813360 | Msa0152840:intron |
| GTTGTGCTAAAAGCTTCTTC+TGG | 0.417650 | 1_4:+15811773 | Msa0152840:CDS |
| ATTTGCAGTCCTTTCTTGGC+TGG | 0.424817 | 1_4:+15814123 | Msa0152840:intron |
| GGACCAACTATCCCTGTGTT+TGG | 0.428815 | 1_4:+15813411 | Msa0152840:CDS |
| CTGCTCGTCACAAGAAATAT+CGG | 0.432561 | 1_4:+15814235 | Msa0152840:CDS |
| CTGGTTTATTATGATGAGAA+AGG | 0.437559 | 1_4:+15813808 | Msa0152840:CDS |
| GTTACTTCAAGTTCATCATC+AGG | 0.439615 | 1_4:-15814183 | None:intergenic |
| GGAGCTAGGATTTCACTTTG+AGG | 0.441647 | 1_4:+15813030 | Msa0152840:CDS |
| GAGGTGAAAGAGAGAGAGAT+GGG | 0.444684 | 1_4:-15811600 | None:intergenic |
| CTTTACCTATAATCTTTGTC+AGG | 0.445958 | 1_4:+15811883 | Msa0152840:CDS |
| TACAATTCTGAATCAAATCA+TGG | 0.451305 | 1_4:+15815185 | Msa0152840:three_prime_UTR |
| AGATGGGTTTGGTTGAAGAA+GGG | 0.451642 | 1_4:-15811584 | None:intergenic |
| TAGTTATCAATAACAACAAT+TGG | 0.455748 | 1_4:-15811854 | None:intergenic |
| CCCTGTGTTTGGCGTATGCA+TGG | 0.458028 | 1_4:+15813422 | Msa0152840:CDS |
| GCTCCTTCTGGTGTGATGCA+TGG | 0.460017 | 1_4:+15813775 | Msa0152840:CDS |
| GAAAGAGAGAGAGATGGGTT+TGG | 0.460763 | 1_4:-15811595 | None:intergenic |
| CTCCTTCTGGTGTGATGCAT+GGG | 0.464234 | 1_4:+15813776 | Msa0152840:CDS |
| AATAACAACAATTGGATCAC+TGG | 0.470291 | 1_4:-15811846 | None:intergenic |
| AAAAGCTTCTTCTGGTGCAT+TGG | 0.475604 | 1_4:+15811781 | Msa0152840:CDS |
| TATGATGAGAAAGGAGAAGA+TGG | 0.477155 | 1_4:+15813817 | Msa0152840:CDS |
| GATGCATGGGAAAAGTTCTC+TGG | 0.479885 | 1_4:+15813789 | Msa0152840:CDS |
| TCACAGCCTTGTAATTGAAA+AGG | 0.491056 | 1_4:+15814152 | Msa0152840:CDS |
| CATGGCAGGGAAAAGAAACT+TGG | 0.494379 | 1_4:+15815203 | Msa0152840:three_prime_UTR |
| GACTGAAGATGGTCTCATAA+TGG | 0.496178 | 1_4:+15814212 | Msa0152840:CDS |
| TGAGGTGAAAGAGAGAGAGA+TGG | 0.498343 | 1_4:-15811601 | None:intergenic |
| TGATATCTTCCAGCCAAGAA+AGG | 0.499322 | 1_4:-15814132 | None:intergenic |
| TCAGGGGTAATGATGCTCTC+TGG | 0.500396 | 1_4:-15814999 | None:intergenic |
| ATTCTGAATCAAATCATGGC+AGG | 0.515852 | 1_4:+15815189 | Msa0152840:three_prime_UTR |
| GGACAATCGTCTTGCCGTCA+GGG | 0.533610 | 1_4:-15815016 | None:intergenic |
| ACGCCAAACACAGGGATAGT+TGG | 0.535785 | 1_4:-15813414 | None:intergenic |
| CAAGAAATATCGGCATATGC+AGG | 0.540602 | 1_4:+15814245 | Msa0152840:CDS |
| AGAGGAGTGCTGATATCACC+TGG | 0.541959 | 1_4:+15813203 | Msa0152840:CDS |
| GTAACAGCATGGACTGAAGA+TGG | 0.547261 | 1_4:+15814201 | Msa0152840:CDS |
| GGGATTACAGTGCATGGGAG+AGG | 0.547779 | 1_4:+15813443 | Msa0152840:CDS |
| ATGCATGGGATTACAGTGCA+TGG | 0.551323 | 1_4:+15813437 | Msa0152840:CDS |
| AGGCAAACTTTACCTGGCCC+AGG | 0.554226 | 1_4:-15813221 | None:intergenic |
| CCCATGCATACGCCAAACAC+AGG | 0.560978 | 1_4:-15813423 | None:intergenic |
| GTGCTGATATCACCTGGGCC+AGG | 0.568658 | 1_4:+15813209 | Msa0152840:CDS |
| CCTGTGTTTGGCGTATGCAT+GGG | 0.573126 | 1_4:+15813423 | Msa0152840:CDS |
| AAATGACGAGCTAACGGTGG+AGG | 0.577905 | 1_4:+15813060 | Msa0152840:CDS |
| TTCTGAATCAAATCATGGCA+GGG | 0.579291 | 1_4:+15815190 | Msa0152840:three_prime_UTR |
| TAACGGTGGAGGAGTTGAAA+AGG | 0.579632 | 1_4:+15813071 | Msa0152840:CDS |
| TTCCCATGCATCACACCAGA+AGG | 0.583344 | 1_4:-15813778 | None:intergenic |
| CACATTCGACAACTCACAAG+TGG | 0.586705 | 1_4:-15812549 | None:intergenic |
| TGCATGGGATTACAGTGCAT+GGG | 0.592618 | 1_4:+15813438 | Msa0152840:CDS |
| CTATAAGCTTCACAAAGTTG+CGG | 0.594543 | 1_4:-15815037 | None:intergenic |
| GTCGAATGTGCAGCAAGGCG+AGG | 0.595600 | 1_4:+15812562 | Msa0152840:CDS |
| GGTGATATCAGCACTCCTCT+CGG | 0.597752 | 1_4:-15813200 | None:intergenic |
| ATTTACGTTTGAAGTATATG+GGG | 0.600393 | 1_4:+15813008 | Msa0152840:intron |
| GAGAGCATCATTACCCCTGA+CGG | 0.606613 | 1_4:+15815002 | Msa0152840:CDS |
| CTACCGAAATGACGAGCTAA+CGG | 0.615964 | 1_4:+15813054 | Msa0152840:CDS |
| ACAATTACAAACAACAACAA+TGG | 0.616729 | 1_4:+15811537 | Msa0152840:exon |
| GACAATCGTCTTGCCGTCAG+GGG | 0.625626 | 1_4:-15815015 | None:intergenic |
| TTTACGTTTGAAGTATATGG+GGG | 0.628330 | 1_4:+15813009 | Msa0152840:intron |
| AGGGTACTTGAGGAAAGTTG+AGG | 0.629346 | 1_4:-15811631 | None:intergenic |
| CCATGCATACGCCAAACACA+GGG | 0.642043 | 1_4:-15813422 | None:intergenic |
| CCGAAATGACGAGCTAACGG+TGG | 0.647064 | 1_4:+15813057 | Msa0152840:CDS |
| TTGGAAGTGAATTCAAAGCA+AGG | 0.647115 | 1_4:+15811800 | Msa0152840:CDS |
| TGCATGGGAGAGGCTTTCGG+CGG | 0.661975 | 1_4:+15813453 | Msa0152840:CDS |
| ATGAACTTGAAGTAACAGCA+TGG | 0.667142 | 1_4:+15814190 | Msa0152840:CDS |
| GGAGATTCGAGAAATGAATG+TGG | 0.672717 | 1_4:-15811563 | None:intergenic |
| AAAGATATGCCTGAATCTTG+AGG | 0.685103 | 1_4:-15813369 | None:intergenic |
| GAAAGTTGAGGAGATTGATG+AGG | 0.691759 | 1_4:-15811619 | None:intergenic |
| GAGGAGTGCTGATATCACCT+GGG | 0.710470 | 1_4:+15813204 | Msa0152840:CDS |
| GAGTTGTCGAATGTGCAGCA+AGG | 0.738897 | 1_4:+15812557 | Msa0152840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTAATTTAATTAA+TGG | + | chr1_4:15811950-15811969 | Msa0152840:intron | 0.0% |
| !! | TTAATTTAATTAATGGTTAA+TGG | + | chr1_4:15811957-15811976 | Msa0152840:intron | 10.0% |
| !!! | TTTAATTTCACATTAAATTT+AGG | - | chr1_4:15812819-15812838 | None:intergenic | 10.0% |
| !!! | AAAATTTTACATTGAATTAT+AGG | - | chr1_4:15813576-15813595 | None:intergenic | 10.0% |
| !!! | TTCTTTTTATTAATTCTATT+TGG | - | chr1_4:15815134-15815153 | None:intergenic | 10.0% |
| !! | TTAATAAAAAGAAGAATAAT+AGG | + | chr1_4:15815141-15815160 | Msa0152840:three_prime_UTR | 10.0% |
| !! | AAAGAACATTATTGATAAAA+GGG | - | chr1_4:15811669-15811688 | None:intergenic | 15.0% |
| !! | AAAAGAACATTATTGATAAA+AGG | - | chr1_4:15811670-15811689 | None:intergenic | 15.0% |
| !!! | GTTACAATTTTTTCTTTTTT+CGG | - | chr1_4:15813546-15813565 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAAACCTACTT+TGG | - | chr1_4:15813859-15813878 | None:intergenic | 15.0% |
| !!! | AAAGTAGGTTTTAATTTTTA+TGG | + | chr1_4:15813858-15813877 | Msa0152840:intron | 15.0% |
| !!! | ATGGTTTTAAATTACATTTA+TGG | + | chr1_4:15813877-15813896 | Msa0152840:intron | 15.0% |
| !!! | GAATTTTTATTGCAGATTTA+AGG | + | chr1_4:15811726-15811745 | Msa0152840:intron | 20.0% |
| !! | TAGTTATCAATAACAACAAT+TGG | - | chr1_4:15811857-15811876 | None:intergenic | 20.0% |
| !!! | GAATATGAGTACATAATTTT+TGG | + | chr1_4:15812033-15812052 | Msa0152840:intron | 20.0% |
| !!! | TTGAATTAGAAAAAGTATTG+TGG | + | chr1_4:15812196-15812215 | Msa0152840:intron | 20.0% |
| !! | TGCAAAATTCAATGTATTTA+GGG | - | chr1_4:15812393-15812412 | None:intergenic | 20.0% |
| !! | TTGCAAAATTCAATGTATTT+AGG | - | chr1_4:15812394-15812413 | None:intergenic | 20.0% |
| !!! | AATTCAAAGTCAATGTTTTA+GGG | - | chr1_4:15812469-15812488 | None:intergenic | 20.0% |
| !!! | TAATTCAAAGTCAATGTTTT+AGG | - | chr1_4:15812470-15812489 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATTGTACTTG+TGG | + | chr1_4:15812941-15812960 | Msa0152840:intron | 20.0% |
| !!! | ATCTGTTCTTTTTAGAAAAT+CGG | + | chr1_4:15812967-15812986 | Msa0152840:intron | 20.0% |
| !!! | TTATTGATGAAACTGTTTTT+GGG | + | chr1_4:15813106-15813125 | Msa0152840:intron | 20.0% |
| !!! | TCTGTTTTATTATTTTGAAC+AGG | + | chr1_4:15813171-15813190 | Msa0152840:intron | 20.0% |
| !!! | ATAATCGAAAATTTTGAAGA+AGG | - | chr1_4:15813244-15813263 | None:intergenic | 20.0% |
| !! | GGTAAAATACATTTATATTG+AGG | + | chr1_4:15813910-15813929 | Msa0152840:intron | 20.0% |
| !! | ATTTATATTGAGGTAAAATG+CGG | + | chr1_4:15813920-15813939 | Msa0152840:intron | 20.0% |
| !! | TCTTAACATGCATTTATATT+AGG | + | chr1_4:15814352-15814371 | Msa0152840:intron | 20.0% |
| !! | TATTAAACTAGTAGATTAAC+TGG | + | chr1_4:15814550-15814569 | Msa0152840:intron | 20.0% |
| !! | TTAACTTCATTATTCATACA+CGG | + | chr1_4:15814591-15814610 | Msa0152840:intron | 20.0% |
| !!! | TATTTTGACTATTTGAGTAA+AGG | - | chr1_4:15814681-15814700 | None:intergenic | 20.0% |
| !! | AACAATTCCTATAGATTTAA+GGG | - | chr1_4:15815245-15815264 | None:intergenic | 20.0% |
| ! | ACAATTACAAACAACAACAA+TGG | + | chr1_4:15811537-15811556 | Msa0152840:exon | 25.0% |
| !! | AAAAGGGTGTATGAATAAAA+GGG | - | chr1_4:15811653-15811672 | None:intergenic | 25.0% |
| !! | TAAAAGGGTGTATGAATAAA+AGG | - | chr1_4:15811654-15811673 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTTGAGACAAAA+AGG | + | chr1_4:15811741-15811760 | Msa0152840:CDS | 25.0% |
| !! | TTTAAGGTTTGAGACAAAAA+GGG | + | chr1_4:15811742-15811761 | Msa0152840:CDS | 25.0% |
| !!! | ATTCAAAGTCAATGTTTTAG+GGG | - | chr1_4:15812468-15812487 | None:intergenic | 25.0% |
| !!! | ATAAACTTGGTTCTTTTGAA+GGG | - | chr1_4:15812634-15812653 | None:intergenic | 25.0% |
| !!! | AATAAACTTGGTTCTTTTGA+AGG | - | chr1_4:15812635-15812654 | None:intergenic | 25.0% |
| !! | TCATTTACGTTTGAAGTATA+TGG | + | chr1_4:15813006-15813025 | Msa0152840:intron | 25.0% |
| !! | CATTTACGTTTGAAGTATAT+GGG | + | chr1_4:15813007-15813026 | Msa0152840:intron | 25.0% |
| !! | ATTTACGTTTGAAGTATATG+GGG | + | chr1_4:15813008-15813027 | Msa0152840:intron | 25.0% |
| ! | CAAAAACAGTTTCATCAATA+AGG | - | chr1_4:15813107-15813126 | None:intergenic | 25.0% |
| !! | CTTATTGATGAAACTGTTTT+TGG | + | chr1_4:15813105-15813124 | Msa0152840:intron | 25.0% |
| ! | AGAAAGTTTCTTATTACATC+AGG | - | chr1_4:15813154-15813173 | None:intergenic | 25.0% |
| ! | TAGTTCATTAATCGTGTTTA+AGG | - | chr1_4:15813300-15813319 | None:intergenic | 25.0% |
| ! | AAGAAAAAATTGTAACGAAC+AGG | + | chr1_4:15813550-15813569 | Msa0152840:intron | 25.0% |
| ! | AACGGTAAAAGTTAAAATGT+AGG | - | chr1_4:15813660-15813679 | None:intergenic | 25.0% |
| !! | CAGAAGCATATAAAAATGAA+CGG | - | chr1_4:15814067-15814086 | None:intergenic | 25.0% |
| ! | TAGATTAACTGGTTAAGTTA+CGG | + | chr1_4:15814561-15814580 | Msa0152840:intron | 25.0% |
| ! | ATAGTCAAAATAGTTGAACT+TGG | + | chr1_4:15814689-15814708 | Msa0152840:intron | 25.0% |
| ! | TAATAAAGTCGAATTCAACA+GGG | - | chr1_4:15814774-15814793 | None:intergenic | 25.0% |
| ! | AACAATGTGAAAGATAAGAT+AGG | - | chr1_4:15814832-15814851 | None:intergenic | 25.0% |
| !! | ATCTTAGCATTCAATGATTT+TGG | + | chr1_4:15814875-15814894 | Msa0152840:intron | 25.0% |
| !!! | ATGATTTTGGTTTAAAGAGT+TGG | + | chr1_4:15814888-15814907 | Msa0152840:intron | 25.0% |
| ! | TTTAAAGAGTTGGAATCTTA+GGG | + | chr1_4:15814898-15814917 | Msa0152840:intron | 25.0% |
| ! | AAGTTTAGTATGTGAGAAAA+GGG | - | chr1_4:15814943-15814962 | None:intergenic | 25.0% |
| ! | AAAGTTTAGTATGTGAGAAA+AGG | - | chr1_4:15814944-15814963 | None:intergenic | 25.0% |
| ! | TACAATTCTGAATCAAATCA+TGG | + | chr1_4:15815185-15815204 | Msa0152840:three_prime_UTR | 25.0% |
| ! | AGAATTTCCCTTAAATCTAT+AGG | + | chr1_4:15815235-15815254 | Msa0152840:three_prime_UTR | 25.0% |
| ! | CAACAATTCCTATAGATTTA+AGG | - | chr1_4:15815246-15815265 | None:intergenic | 25.0% |
| !! | TATGAATAAAAGGGTACTTG+AGG | - | chr1_4:15811644-15811663 | None:intergenic | 30.0% |
| AATAACAACAATTGGATCAC+TGG | - | chr1_4:15811849-15811868 | None:intergenic | 30.0% | |
| CTTTACCTATAATCTTTGTC+AGG | + | chr1_4:15811883-15811902 | Msa0152840:CDS | 30.0% | |
| ACAAACCTGACAAAGATTAT+AGG | - | chr1_4:15811891-15811910 | None:intergenic | 30.0% | |
| !! | GGTTAAAGTGTTTTAAATCG+TGG | + | chr1_4:15812217-15812236 | Msa0152840:intron | 30.0% |
| ! | GAAGGGTAACATTTTCAAAT+GGG | - | chr1_4:15812617-15812636 | None:intergenic | 30.0% |
| ! | TGAAGGGTAACATTTTCAAA+TGG | - | chr1_4:15812618-15812637 | None:intergenic | 30.0% |
| AAAGAACCAAGTTTATTTGC+TGG | + | chr1_4:15812638-15812657 | Msa0152840:intron | 30.0% | |
| AGTTTAACACTGGATTAACA+TGG | + | chr1_4:15812734-15812753 | Msa0152840:intron | 30.0% | |
| ATTGCACTTCTCTTTAAACA+AGG | - | chr1_4:15812895-15812914 | None:intergenic | 30.0% | |
| ! | TTTACGTTTGAAGTATATGG+GGG | + | chr1_4:15813009-15813028 | Msa0152840:intron | 30.0% |
| AATCAATTCTTTGTAATCCC+AGG | + | chr1_4:15813484-15813503 | Msa0152840:intron | 30.0% | |
| ATCAATTCTTTGTAATCCCA+GGG | + | chr1_4:15813485-15813504 | Msa0152840:intron | 30.0% | |
| CATGTCATTCATCATTAACT+CGG | + | chr1_4:15813609-15813628 | Msa0152840:intron | 30.0% | |
| ATGTTGTCATTGAGATGAAA+CGG | - | chr1_4:15813678-15813697 | None:intergenic | 30.0% | |
| AAGTCTTGATCCTATTGTAA+TGG | - | chr1_4:15813721-15813740 | None:intergenic | 30.0% | |
| ATTACAATAGGATCAAGACT+TGG | + | chr1_4:15813720-15813739 | Msa0152840:intron | 30.0% | |
| CTGGTTTATTATGATGAGAA+AGG | + | chr1_4:15813808-15813827 | Msa0152840:CDS | 30.0% | |
| TCTCAAAAATCCCTATATTG+TGG | + | chr1_4:15813978-15813997 | Msa0152840:intron | 30.0% | |
| ! | TTCTGAGCTCTGATATAATT+TGG | + | chr1_4:15814082-15814101 | Msa0152840:intron | 30.0% |
| ATAATAGTAATCGCATGTGA+CGG | - | chr1_4:15814488-15814507 | None:intergenic | 30.0% | |
| TTCTTTCTGACAGTCAATAA+AGG | + | chr1_4:15814646-15814665 | Msa0152840:intron | 30.0% | |
| CTTGGTTCATTATTGATATG+CGG | + | chr1_4:15814707-15814726 | Msa0152840:intron | 30.0% | |
| GTAATAAAGTCGAATTCAAC+AGG | - | chr1_4:15814775-15814794 | None:intergenic | 30.0% | |
| GTTTAAAGAGTTGGAATCTT+AGG | + | chr1_4:15814897-15814916 | Msa0152840:intron | 30.0% | |
| TTTCATTTGTTTGCAACTAC+AGG | + | chr1_4:15814962-15814981 | Msa0152840:intron | 30.0% | |
| TTCATTTGTTTGCAACTACA+GGG | + | chr1_4:15814963-15814982 | Msa0152840:intron | 30.0% | |
| TGTGAAGCTTATAGAGAAAA+AGG | + | chr1_4:15815046-15815065 | Msa0152840:CDS | 30.0% | |
| ! | TTTGAGACAAAAAGGGCAAA+AGG | + | chr1_4:15811749-15811768 | Msa0152840:CDS | 35.0% |
| TTGAGACAAAAAGGGCAAAA+GGG | + | chr1_4:15811750-15811769 | Msa0152840:CDS | 35.0% | |
| TTGGAAGTGAATTCAAAGCA+AGG | + | chr1_4:15811800-15811819 | Msa0152840:CDS | 35.0% | |
| ! | GAATTCAAAGCAAGGTGTTT+CGG | + | chr1_4:15811808-15811827 | Msa0152840:CDS | 35.0% |
| AACAATTGGATCACTGGATT+TGG | - | chr1_4:15811843-15811862 | None:intergenic | 35.0% | |
| !!! | GTGTTTTTTTACCGCGAAAT+TGG | + | chr1_4:15812103-15812122 | Msa0152840:intron | 35.0% |
| !!! | TTTTTTACCGCGAAATTGGT+TGG | + | chr1_4:15812107-15812126 | Msa0152840:intron | 35.0% |
| ACGTTATGATCGTTAACGTT+AGG | + | chr1_4:15812248-15812267 | Msa0152840:intron | 35.0% | |
| CGTTATGATCGTTAACGTTA+GGG | + | chr1_4:15812249-15812268 | Msa0152840:intron | 35.0% | |
| GTTATGATCGTTAACGTTAG+GGG | + | chr1_4:15812250-15812269 | Msa0152840:intron | 35.0% | |
| ! | CCACTCATTCAAGGATTTTT+GGG | - | chr1_4:15812323-15812342 | None:intergenic | 35.0% |
| CCAAAAATCCTTGAATGAGT+GGG | + | chr1_4:15812321-15812340 | Msa0152840:intron | 35.0% | |
| CAAAAATCCTTGAATGAGTG+GGG | + | chr1_4:15812322-15812341 | Msa0152840:intron | 35.0% | |
| ! | GTATGAAATCAGCTTTAGCT+GGG | + | chr1_4:15812664-15812683 | Msa0152840:intron | 35.0% |
| ! | TATGAAATCAGCTTTAGCTG+GGG | + | chr1_4:15812665-15812684 | Msa0152840:intron | 35.0% |
| ! | TTTTGATGCTCCTATGGTAA+AGG | + | chr1_4:15812702-15812721 | Msa0152840:intron | 35.0% |
| TTTGATGCTCCTATGGTAAA+GGG | + | chr1_4:15812703-15812722 | Msa0152840:intron | 35.0% | |
| TAACATGGCAACGGAAAATA+TGG | + | chr1_4:15812749-15812768 | Msa0152840:intron | 35.0% | |
| GCAAACAATGTTACATTAGG+AGG | - | chr1_4:15813335-15813354 | None:intergenic | 35.0% | |
| GGAGCAAACAATGTTACATT+AGG | - | chr1_4:15813338-15813357 | None:intergenic | 35.0% | |
| TAACATTGTTTGCTCCTTAC+AGG | + | chr1_4:15813342-15813361 | Msa0152840:intron | 35.0% | |
| AAAGATATGCCTGAATCTTG+AGG | - | chr1_4:15813372-15813391 | None:intergenic | 35.0% | |
| ! | TTGCAAACAGTTTTCGAACT+TGG | + | chr1_4:15813390-15813409 | Msa0152840:CDS | 35.0% |
| !! | CACTTTTAGAAGTTTTCCCT+GGG | - | chr1_4:15813504-15813523 | None:intergenic | 35.0% |
| !! | TCACTTTTAGAAGTTTTCCC+TGG | - | chr1_4:15813505-15813524 | None:intergenic | 35.0% |
| !!! | AACTCGGCTTTCTTTTTCAA+TGG | + | chr1_4:15813625-15813644 | Msa0152840:intron | 35.0% |
| AAAATTATTCGTGCTCCTTC+TGG | + | chr1_4:15813763-15813782 | Msa0152840:CDS | 35.0% | |
| TATGATGAGAAAGGAGAAGA+TGG | + | chr1_4:15813817-15813836 | Msa0152840:CDS | 35.0% | |
| TACATTTATGGTCGCAATTG+CGG | + | chr1_4:15813889-15813908 | Msa0152840:intron | 35.0% | |
| TATCATTTGCAGTCCTTTCT+TGG | + | chr1_4:15814119-15814138 | Msa0152840:intron | 35.0% | |
| ! | TCACAGCCTTGTAATTGAAA+AGG | + | chr1_4:15814152-15814171 | Msa0152840:CDS | 35.0% |
| ! | AGCTCTCCTTTTCAATTACA+AGG | - | chr1_4:15814161-15814180 | None:intergenic | 35.0% |
| ! | GTTACTTCAAGTTCATCATC+AGG | - | chr1_4:15814186-15814205 | None:intergenic | 35.0% |
| ATGAACTTGAAGTAACAGCA+TGG | + | chr1_4:15814190-15814209 | Msa0152840:CDS | 35.0% | |
| TCATGACAGATAAGTACAAC+AGG | - | chr1_4:15814285-15814304 | None:intergenic | 35.0% | |
| !! | ATGCGATTTTGGTCTATTGT+AGG | + | chr1_4:15814326-15814345 | Msa0152840:intron | 35.0% |
| CTATAAGCTTCACAAAGTTG+CGG | - | chr1_4:15815040-15815059 | None:intergenic | 35.0% | |
| CTGAATTACTGTTCGAAGTT+CGG | + | chr1_4:15815104-15815123 | Msa0152840:three_prime_UTR | 35.0% | |
| ATTCTGAATCAAATCATGGC+AGG | + | chr1_4:15815189-15815208 | Msa0152840:three_prime_UTR | 35.0% | |
| TTCTGAATCAAATCATGGCA+GGG | + | chr1_4:15815190-15815209 | Msa0152840:three_prime_UTR | 35.0% | |
| GGAGATTCGAGAAATGAATG+TGG | - | chr1_4:15811566-15811585 | None:intergenic | 40.0% | |
| ! | AGATGGGTTTGGTTGAAGAA+GGG | - | chr1_4:15811587-15811606 | None:intergenic | 40.0% |
| GAAAGTTGAGGAGATTGATG+AGG | - | chr1_4:15811622-15811641 | None:intergenic | 40.0% | |
| TGAGACAAAAAGGGCAAAAG+GGG | + | chr1_4:15811751-15811770 | Msa0152840:CDS | 40.0% | |
| GTTGTGCTAAAAGCTTCTTC+TGG | + | chr1_4:15811773-15811792 | Msa0152840:CDS | 40.0% | |
| AAAAGCTTCTTCTGGTGCAT+TGG | + | chr1_4:15811781-15811800 | Msa0152840:CDS | 40.0% | |
| ATCAACTCCAACCAATTTCG+CGG | - | chr1_4:15812117-15812136 | None:intergenic | 40.0% | |
| CCCAAAAATCCTTGAATGAG+TGG | + | chr1_4:15812320-15812339 | Msa0152840:intron | 40.0% | |
| ! | CCCACTCATTCAAGGATTTT+TGG | - | chr1_4:15812324-15812343 | None:intergenic | 40.0% |
| ! | CTACAACATCAAGGTTTTCG+AGG | - | chr1_4:15812529-15812548 | None:intergenic | 40.0% |
| ! | GAACCAAGTTTATTTGCTGG+CGG | + | chr1_4:15812641-15812660 | Msa0152840:intron | 40.0% |
| ! | AACCAAGTTTATTTGCTGGC+GGG | + | chr1_4:15812642-15812661 | Msa0152840:intron | 40.0% |
| ! | GGTATGAAATCAGCTTTAGC+TGG | + | chr1_4:15812663-15812682 | Msa0152840:intron | 40.0% |
| TTGATGCTCCTATGGTAAAG+GGG | + | chr1_4:15812704-15812723 | Msa0152840:intron | 40.0% | |
| TAACTCTTCCCCTTTACCAT+AGG | - | chr1_4:15812715-15812734 | None:intergenic | 40.0% | |
| ! | GGGAAGAGTTAGTTTAACAC+TGG | + | chr1_4:15812724-15812743 | Msa0152840:intron | 40.0% |
| ACACTGGATTAACATGGCAA+CGG | + | chr1_4:15812740-15812759 | Msa0152840:intron | 40.0% | |
| TTGAACAGGAAAAATCCGAG+AGG | + | chr1_4:15813185-15813204 | Msa0152840:intron | 40.0% | |
| TGAAGAAGGCAAACTTTACC+TGG | - | chr1_4:15813230-15813249 | None:intergenic | 40.0% | |
| ! | AATCTTGAGGTGTTCCTGTA+AGG | - | chr1_4:15813359-15813378 | None:intergenic | 40.0% |
| !! | TTGGTTCTTTTATCTCGTGC+AGG | + | chr1_4:15813739-15813758 | Msa0152840:intron | 40.0% |
| ! | TGGTTCTTTTATCTCGTGCA+GGG | + | chr1_4:15813740-15813759 | Msa0152840:intron | 40.0% |
| CCACAATGATATCGCAATTG+TGG | - | chr1_4:15813955-15813974 | None:intergenic | 40.0% | |
| CCACAATTGCGATATCATTG+TGG | + | chr1_4:15813952-15813971 | Msa0152840:intron | 40.0% | |
| TGATATCTTCCAGCCAAGAA+AGG | - | chr1_4:15814135-15814154 | None:intergenic | 40.0% | |
| GACTGAAGATGGTCTCATAA+TGG | + | chr1_4:15814212-15814231 | Msa0152840:CDS | 40.0% | |
| CTGCTCGTCACAAGAAATAT+CGG | + | chr1_4:15814235-15814254 | Msa0152840:CDS | 40.0% | |
| CAAGAAATATCGGCATATGC+AGG | + | chr1_4:15814245-15814264 | Msa0152840:CDS | 40.0% | |
| ! | TCATGATAGCGTCCAAGAAA+GGG | + | chr1_4:15814299-15814318 | Msa0152840:intron | 40.0% |
| ! | GAAGTGTCAGTGTTACATGA+AGG | - | chr1_4:15814403-15814422 | None:intergenic | 40.0% |
| GTATACTGGTGTAGCTTCTA+TGG | - | chr1_4:15814748-15814767 | None:intergenic | 40.0% | |
| ATTCAACAGGGTAGGTATAC+TGG | - | chr1_4:15814762-15814781 | None:intergenic | 40.0% | |
| AAAGTCGAATTCAACAGGGT+AGG | - | chr1_4:15814770-15814789 | None:intergenic | 40.0% | |
| ! | GAGATGGGTTTGGTTGAAGA+AGG | - | chr1_4:15811588-15811607 | None:intergenic | 45.0% |
| ! | GAAAGAGAGAGAGATGGGTT+TGG | - | chr1_4:15811598-15811617 | None:intergenic | 45.0% |
| GAGGTGAAAGAGAGAGAGAT+GGG | - | chr1_4:15811603-15811622 | None:intergenic | 45.0% | |
| TGAGGTGAAAGAGAGAGAGA+TGG | - | chr1_4:15811604-15811623 | None:intergenic | 45.0% | |
| ! | AGGGTACTTGAGGAAAGTTG+AGG | - | chr1_4:15811634-15811653 | None:intergenic | 45.0% |
| ! | GCTATTTCCCCACTCATTCA+AGG | - | chr1_4:15812332-15812351 | None:intergenic | 45.0% |
| GTTACGCAACAATCACAGCA+GGG | - | chr1_4:15812357-15812376 | None:intergenic | 45.0% | |
| TGTTACGCAACAATCACAGC+AGG | - | chr1_4:15812358-15812377 | None:intergenic | 45.0% | |
| GCTGTGATTGTTGCGTAACA+TGG | + | chr1_4:15812358-15812377 | Msa0152840:intron | 45.0% | |
| ACCCTGTCACGACACAATTA+CGG | - | chr1_4:15812433-15812452 | None:intergenic | 45.0% | |
| CACAAGTGGCTACAACATCA+AGG | - | chr1_4:15812538-15812557 | None:intergenic | 45.0% | |
| CACATTCGACAACTCACAAG+TGG | - | chr1_4:15812552-15812571 | None:intergenic | 45.0% | |
| TACCCGCCAGCAAATAAACT+TGG | - | chr1_4:15812647-15812666 | None:intergenic | 45.0% | |
| !! | CTTCGCTTTTGATGCTCCTA+TGG | + | chr1_4:15812696-15812715 | Msa0152840:intron | 45.0% |
| TTGAAGTATATGGGGGAGCT+AGG | + | chr1_4:15813016-15813035 | Msa0152840:intron | 45.0% | |
| GGAGCTAGGATTTCACTTTG+AGG | + | chr1_4:15813030-15813049 | Msa0152840:CDS | 45.0% | |
| CTACCGAAATGACGAGCTAA+CGG | + | chr1_4:15813054-15813073 | Msa0152840:CDS | 45.0% | |
| TAACGGTGGAGGAGTTGAAA+AGG | + | chr1_4:15813071-15813090 | Msa0152840:CDS | 45.0% | |
| ACAGGAACACCTCAAGATTC+AGG | + | chr1_4:15813360-15813379 | Msa0152840:intron | 45.0% | |
| ATGCATGGGATTACAGTGCA+TGG | + | chr1_4:15813437-15813456 | Msa0152840:CDS | 45.0% | |
| TGCATGGGATTACAGTGCAT+GGG | + | chr1_4:15813438-15813457 | Msa0152840:CDS | 45.0% | |
| GACAACATCATTTCTTCCCC+TGG | + | chr1_4:15813690-15813709 | Msa0152840:intron | 45.0% | |
| GATGCATGGGAAAAGTTCTC+TGG | + | chr1_4:15813789-15813808 | Msa0152840:CDS | 45.0% | |
| !! | GGAGAAGATGGATTACTTGC+TGG | + | chr1_4:15813829-15813848 | Msa0152840:CDS | 45.0% |
| ! | ACTTGCTGGACTACCAAAGT+AGG | + | chr1_4:15813843-15813862 | Msa0152840:intron | 45.0% |
| ACAATCGCGGCCACAATATA+GGG | - | chr1_4:15813991-15814010 | None:intergenic | 45.0% | |
| ATTTGCAGTCCTTTCTTGGC+TGG | + | chr1_4:15814123-15814142 | Msa0152840:intron | 45.0% | |
| ! | GTAACAGCATGGACTGAAGA+TGG | + | chr1_4:15814201-15814220 | Msa0152840:CDS | 45.0% |
| ! | GTCATGATAGCGTCCAAGAA+AGG | + | chr1_4:15814298-15814317 | Msa0152840:intron | 45.0% |
| AGAGTTGGAATCTTAGGGTC+TGG | + | chr1_4:15814903-15814922 | Msa0152840:intron | 45.0% | |
| CATGGCAGGGAAAAGAAACT+TGG | + | chr1_4:15815203-15815222 | Msa0152840:three_prime_UTR | 45.0% | |
| !!! | TTATTTTCTTAAATTATTAT+CGG | + | chr1_4:15814504-15814523 | Msa0152840:intron | 5.0% |
| CTGTCACGACACAATTACGG+CGG | - | chr1_4:15812430-15812449 | None:intergenic | 50.0% | |
| GCCGTAATTGTGTCGTGACA+GGG | + | chr1_4:15812429-15812448 | Msa0152840:intron | 50.0% | |
| TGCAATGCCGTGTCATGACA+TGG | + | chr1_4:15812494-15812513 | Msa0152840:intron | 50.0% | |
| GAGTTGTCGAATGTGCAGCA+AGG | + | chr1_4:15812557-15812576 | Msa0152840:CDS | 50.0% | |
| TGCAGCAAGGCGAGGTTTAA+CGG | + | chr1_4:15812570-15812589 | Msa0152840:CDS | 50.0% | |
| CCACCGTTAGCTCGTCATTT+CGG | - | chr1_4:15813060-15813079 | None:intergenic | 50.0% | |
| AAATGACGAGCTAACGGTGG+AGG | + | chr1_4:15813060-15813079 | Msa0152840:CDS | 50.0% | |
| GGTGATATCAGCACTCCTCT+CGG | - | chr1_4:15813203-15813222 | None:intergenic | 50.0% | |
| !! | AGAGGAGTGCTGATATCACC+TGG | + | chr1_4:15813203-15813222 | Msa0152840:CDS | 50.0% |
| !! | GAGGAGTGCTGATATCACCT+GGG | + | chr1_4:15813204-15813223 | Msa0152840:CDS | 50.0% |
| GGACCAACTATCCCTGTGTT+TGG | + | chr1_4:15813411-15813430 | Msa0152840:CDS | 50.0% | |
| ACGCCAAACACAGGGATAGT+TGG | - | chr1_4:15813417-15813436 | None:intergenic | 50.0% | |
| CCATGCATACGCCAAACACA+GGG | - | chr1_4:15813425-15813444 | None:intergenic | 50.0% | |
| CCTGTGTTTGGCGTATGCAT+GGG | + | chr1_4:15813423-15813442 | Msa0152840:CDS | 50.0% | |
| ACATCATTTCTTCCCCTGGC+TGG | + | chr1_4:15813694-15813713 | Msa0152840:intron | 50.0% | |
| CATCATTTCTTCCCCTGGCT+GGG | + | chr1_4:15813695-15813714 | Msa0152840:intron | 50.0% | |
| TATTGTAATGGCCCAGCCAG+GGG | - | chr1_4:15813709-15813728 | None:intergenic | 50.0% | |
| CTATTGTAATGGCCCAGCCA+GGG | - | chr1_4:15813710-15813729 | None:intergenic | 50.0% | |
| CTCCTTCTGGTGTGATGCAT+GGG | + | chr1_4:15813776-15813795 | Msa0152840:CDS | 50.0% | |
| TTCCCATGCATCACACCAGA+AGG | - | chr1_4:15813781-15813800 | None:intergenic | 50.0% | |
| CACAATCGCGGCCACAATAT+AGG | - | chr1_4:15813992-15814011 | None:intergenic | 50.0% | |
| CTATATTGTGGCCGCGATTG+TGG | + | chr1_4:15813990-15814009 | Msa0152840:intron | 50.0% | |
| GATAGCGTCCAAGAAAGGGT+CGG | + | chr1_4:15814303-15814322 | Msa0152840:intron | 50.0% | |
| AATCGCATCCGACCCTTTCT+TGG | - | chr1_4:15814314-15814333 | None:intergenic | 50.0% | |
| ! | GAAAGGGTCGGATGCGATTT+TGG | + | chr1_4:15814315-15814334 | Msa0152840:intron | 50.0% |
| TCAGGGGTAATGATGCTCTC+TGG | - | chr1_4:15815002-15815021 | None:intergenic | 50.0% | |
| !! | GAGAGCATCATTACCCCTGA+CGG | + | chr1_4:15815002-15815021 | Msa0152840:CDS | 50.0% |
| CGCCGTAATTGTGTCGTGAC+AGG | + | chr1_4:15812428-15812447 | Msa0152840:intron | 55.0% | |
| TCCGCGACCATGTCATGACA+CGG | - | chr1_4:15812504-15812523 | None:intergenic | 55.0% | |
| CCGAAATGACGAGCTAACGG+TGG | + | chr1_4:15813057-15813076 | Msa0152840:CDS | 55.0% | |
| AGGCAAACTTTACCTGGCCC+AGG | - | chr1_4:15813224-15813243 | None:intergenic | 55.0% | |
| CCCTGTGTTTGGCGTATGCA+TGG | + | chr1_4:15813422-15813441 | Msa0152840:CDS | 55.0% | |
| CCCATGCATACGCCAAACAC+AGG | - | chr1_4:15813426-15813445 | None:intergenic | 55.0% | |
| GGGATTACAGTGCATGGGAG+AGG | + | chr1_4:15813443-15813462 | Msa0152840:CDS | 55.0% | |
| CAGTGCATGGGAGAGGCTTT+CGG | + | chr1_4:15813450-15813469 | Msa0152840:CDS | 55.0% | |
| CCTATTGTAATGGCCCAGCC+AGG | - | chr1_4:15813711-15813730 | None:intergenic | 55.0% | |
| CCTGGCTGGGCCATTACAAT+AGG | + | chr1_4:15813708-15813727 | Msa0152840:intron | 55.0% | |
| GCTCCTTCTGGTGTGATGCA+TGG | + | chr1_4:15813775-15813794 | Msa0152840:CDS | 55.0% | |
| GCAGTACGCAACCACAATCG+CGG | - | chr1_4:15814004-15814023 | None:intergenic | 55.0% | |
| TCGCATGTGACGGCGTCTAT+CGG | - | chr1_4:15814478-15814497 | None:intergenic | 55.0% | |
| GACAATCGTCTTGCCGTCAG+GGG | - | chr1_4:15815018-15815037 | None:intergenic | 55.0% | |
| GGACAATCGTCTTGCCGTCA+GGG | - | chr1_4:15815019-15815038 | None:intergenic | 55.0% | |
| GCCGTGTCATGACATGGTCG+CGG | + | chr1_4:15812500-15812519 | Msa0152840:intron | 60.0% | |
| GTCGAATGTGCAGCAAGGCG+AGG | + | chr1_4:15812562-15812581 | Msa0152840:CDS | 60.0% | |
| ! | GTGCTGATATCACCTGGGCC+AGG | + | chr1_4:15813209-15813228 | Msa0152840:CDS | 60.0% |
| TGCATGGGAGAGGCTTTCGG+CGG | + | chr1_4:15813453-15813472 | Msa0152840:CDS | 60.0% | |
| CGGACAATCGTCTTGCCGTC+AGG | - | chr1_4:15815020-15815039 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15811528 | 15815311 | 15811528 | ID=Msa0152840;Name=Msa0152840 |
| chr1_4 | mRNA | 15811528 | 15815311 | 15811528 | ID=Msa0152840-mRNA-1;Parent=Msa0152840;Name=Msa0152840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=28|0.75|0.88|0.88|1|1|9|226|303 |
| chr1_4 | exon | 15811528 | 15811646 | 15811528 | ID=Msa0152840-mRNA-1:exon:6106;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15811741 | 15811904 | 15811741 | ID=Msa0152840-mRNA-1:exon:6107;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15812549 | 15812647 | 15812549 | ID=Msa0152840-mRNA-1:exon:6108;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15813022 | 15813092 | 15813022 | ID=Msa0152840-mRNA-1:exon:6109;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15813193 | 15813230 | 15813193 | ID=Msa0152840-mRNA-1:exon:6110;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15813364 | 15813474 | 15813364 | ID=Msa0152840-mRNA-1:exon:6111;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15813761 | 15813860 | 15813761 | ID=Msa0152840-mRNA-1:exon:6112;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15814131 | 15814266 | 15814131 | ID=Msa0152840-mRNA-1:exon:6113;Parent=Msa0152840-mRNA-1 |
| chr1_4 | exon | 15814984 | 15815311 | 15814984 | ID=Msa0152840-mRNA-1:exon:6114;Parent=Msa0152840-mRNA-1 |
| chr1_4 | five_prime_UTR | 15811528 | 15811555 | 15811528 | ID=Msa0152840-mRNA-1:five_prime_utr;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15811556 | 15811646 | 15811556 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15811741 | 15811904 | 15811741 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15812549 | 15812647 | 15812549 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15813022 | 15813092 | 15813022 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15813193 | 15813230 | 15813193 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15813364 | 15813474 | 15813364 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15813761 | 15813860 | 15813761 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15814131 | 15814266 | 15814131 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | CDS | 15814984 | 15815085 | 15814984 | ID=Msa0152840-mRNA-1:cds;Parent=Msa0152840-mRNA-1 |
| chr1_4 | three_prime_UTR | 15815086 | 15815311 | 15815086 | ID=Msa0152840-mRNA-1:three_prime_utr;Parent=Msa0152840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
