AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0350020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350020 MtrunA17_Chr3g0084331 98.324 179 3 0 1 179 1 179 8.44e-130 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350020 AT1G50900.1 80.769 130 24 1 51 179 46 175 3.72e-76 226

Find 50 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGTACTTCAACTATA+TGG 0.189978 3_1:-14496335 Msa0350020:intron
GCTGAAGGTGCTGGTATTTA+TGG 0.229748 3_1:-14497428 Msa0350020:CDS
TCAAGCTTCACCTCTAAATT+TGG 0.237887 3_1:-14497509 Msa0350020:CDS
TGTCCACAGGGTGGATCTTT+TGG 0.259304 3_1:+14496263 None:intergenic
CTATGTTATTTCATATGATT+TGG 0.267320 3_1:-14496009 Msa0350020:three_prime_UTR
CCACAAAATTGTCTTCTTCT+CGG 0.279821 3_1:-14497571 Msa0350020:CDS
GCATTGACTCTTCAGGTTAA+AGG 0.301832 3_1:-14495920 Msa0350020:three_prime_UTR
TGTAAATCTTGAACCATTAG+AGG 0.308424 3_1:+14497484 None:intergenic
TCTAAATTTGGACCCTCTAA+TGG 0.321852 3_1:-14497497 Msa0350020:CDS
TGAAGGAACATATGATAAAA+TGG 0.336787 3_1:-14496299 Msa0350020:CDS
TTGTCTTCTTCTCGGTTTCT+TGG 0.342166 3_1:-14497563 Msa0350020:CDS
AAACTTCATGCTAATGATAA+AGG 0.343152 3_1:+14495986 None:intergenic
AGACTTAGAATTTGAAATGA+TGG 0.352730 3_1:+14497616 None:intergenic
TTGCAGTACTTCAACTATAT+GGG 0.353317 3_1:-14496334 Msa0350020:intron
TTTACATGCTGGTTCAAGTT+TGG 0.353910 3_1:-14497467 Msa0350020:CDS
CTATGCAGCATTGACTCTTC+AGG 0.367443 3_1:-14495927 Msa0350020:three_prime_UTR
GTAGCTGAAATGGCAAATAA+TGG 0.380546 3_1:+14496062 None:intergenic
AAACAACTATGTAGCTGAAA+TGG 0.393193 3_1:+14496052 None:intergenic
TGATAGAGATGATGTTGAAC+AGG 0.411754 3_1:-14497384 Msa0350020:intron
TGTGGACATTCTACTGTTGT+TGG 0.422444 3_1:-14496248 Msa0350020:CDS
ATTAGAGGGTCCAAATTTAG+AGG 0.445662 3_1:+14497499 None:intergenic
ATGGGGATGCTCGCCGTTGA+AGG 0.452381 3_1:-14496316 Msa0350020:CDS
ATGGACGGACCGCGTTGGAT+AGG 0.470216 3_1:-14496150 Msa0350020:CDS
GACTTAGAATTTGAAATGAT+GGG 0.473464 3_1:+14497617 None:intergenic
TGCATAGTTTGTTCTTAATG+AGG 0.474979 3_1:+14495943 None:intergenic
GGTATTAGAGTTAAGAGTGT+TGG 0.475847 3_1:-14497542 Msa0350020:CDS
ATGGTTCAAGATTTACATGC+TGG 0.484008 3_1:-14497478 Msa0350020:CDS
TATCAAAATCATCACGAGAC+TGG 0.487504 3_1:+14497402 None:intergenic
CTGTTGTTGGCTTCATCAGA+AGG 0.513599 3_1:-14496235 Msa0350020:CDS
GCATAGTTTGTTCTTAATGA+GGG 0.514565 3_1:+14495944 None:intergenic
TTTATCATATGTTCCTTCAA+CGG 0.514924 3_1:+14496303 None:intergenic
TAGAATTTGAAATGATGGGT+TGG 0.518105 3_1:+14497621 None:intergenic
TGGACGGACCGCGTTGGATA+GGG 0.518747 3_1:-14496149 Msa0350020:CDS
GATTGAAGACATTGCTGTGT+TGG 0.524541 3_1:+14497658 None:intergenic
GTCTGATGTCTAACTTGTGT+TGG 0.535914 3_1:-14495894 Msa0350020:three_prime_UTR
AGGTGACTTGCCGAAAATTG+AGG 0.540400 3_1:-14496215 Msa0350020:CDS
TGCAGTACTTCAACTATATG+GGG 0.549121 3_1:-14496333 Msa0350020:intron
ATTGAGGAACTCTTGAAAGC+AGG 0.563985 3_1:-14496199 Msa0350020:CDS
GGTGTTGATGCTGAAGGTGC+TGG 0.568178 3_1:-14497437 Msa0350020:CDS
CGCAGATGGACGGACCGCGT+TGG 0.589241 3_1:-14496155 Msa0350020:CDS
AACAACAGTAGAATGTCCAC+AGG 0.590242 3_1:+14496250 None:intergenic
ATGTAAAAGACGCAGATGGA+CGG 0.600271 3_1:-14496165 Msa0350020:CDS
TATGATGTAAAAGACGCAGA+TGG 0.606140 3_1:-14496169 Msa0350020:CDS
GTAAATCTTGAACCATTAGA+GGG 0.628078 3_1:+14497485 None:intergenic
TTAGAGTTAAGAGTGTTGGA+TGG 0.638432 3_1:-14497538 Msa0350020:CDS
AGGAACATATGATAAAATGG+AGG 0.671636 3_1:-14496296 Msa0350020:CDS
ACAGTAGAATGTCCACAGGG+TGG 0.725320 3_1:+14496254 None:intergenic
AAGCCAAAAGATCCACCCTG+TGG 0.742256 3_1:-14496266 Msa0350020:CDS
AGCATTAGCCCTATCCAACG+CGG 0.742762 3_1:+14496141 None:intergenic
ACAACAGTAGAATGTCCACA+GGG 0.763235 3_1:+14496251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAAAAACAATTTG+AGG + chr3_1:14496554-14496573 None:intergenic 10.0%
!!! ATTTTTTAAAAAACAATTTG+AGG + chr3_1:14496554-14496573 None:intergenic 10.0%
!! ATAATAACTAATAACTAGTA+AGG - chr3_1:14496675-14496694 Msa0350020:intron 15.0%
!!! TTTTATAACTACATAGAAAT+TGG - chr3_1:14496904-14496923 Msa0350020:intron 15.0%
!! TTTATAACTACATAGAAATT+GGG - chr3_1:14496905-14496924 Msa0350020:intron 15.0%
!!! TTTTTCTGTTTAAAAAATGA+AGG + chr3_1:14497108-14497127 None:intergenic 15.0%
!! ATAATAACTAATAACTAGTA+AGG - chr3_1:14496675-14496694 Msa0350020:intron 15.0%
!!! TTTTATAACTACATAGAAAT+TGG - chr3_1:14496904-14496923 Msa0350020:intron 15.0%
!! TTTATAACTACATAGAAATT+GGG - chr3_1:14496905-14496924 Msa0350020:intron 15.0%
!!! TTTTTCTGTTTAAAAAATGA+AGG + chr3_1:14497108-14497127 None:intergenic 15.0%
!!! TTTAAAATGCAGTAACAAAA+TGG + chr3_1:14496302-14496321 None:intergenic 20.0%
!!! TTGTTACTGCATTTTAAAAA+TGG - chr3_1:14496304-14496323 Msa0350020:CDS 20.0%
!! TGTGAATGAAGTATAAAAAA+GGG + chr3_1:14496363-14496382 None:intergenic 20.0%
!! ATGTGAATGAAGTATAAAAA+AGG + chr3_1:14496364-14496383 None:intergenic 20.0%
!!! AGATTTTATCTATGAGTTAT+TGG - chr3_1:14496429-14496448 Msa0350020:intron 20.0%
!! TAAAAAACAATTTGAGGAAA+GGG + chr3_1:14496548-14496567 None:intergenic 20.0%
!! TTAAAAAACAATTTGAGGAA+AGG + chr3_1:14496549-14496568 None:intergenic 20.0%
!!! ATTTGTTTTGTTCTTTTATC+TGG - chr3_1:14496646-14496665 Msa0350020:intron 20.0%
!!! TTTTTTAACTTGTGTAACTA+TGG - chr3_1:14496726-14496745 Msa0350020:intron 20.0%
!! AATGTAATTGTAATTGAAGA+AGG - chr3_1:14496936-14496955 Msa0350020:intron 20.0%
!!! CTATGTTATTTCATATGATT+TGG - chr3_1:14497554-14497573 Msa0350020:CDS 20.0%
!!! TTTAAAATGCAGTAACAAAA+TGG + chr3_1:14496302-14496321 None:intergenic 20.0%
!!! TTGTTACTGCATTTTAAAAA+TGG - chr3_1:14496304-14496323 Msa0350020:CDS 20.0%
!! TGTGAATGAAGTATAAAAAA+GGG + chr3_1:14496363-14496382 None:intergenic 20.0%
!! ATGTGAATGAAGTATAAAAA+AGG + chr3_1:14496364-14496383 None:intergenic 20.0%
!!! AGATTTTATCTATGAGTTAT+TGG - chr3_1:14496429-14496448 Msa0350020:intron 20.0%
!! TAAAAAACAATTTGAGGAAA+GGG + chr3_1:14496548-14496567 None:intergenic 20.0%
!! TTAAAAAACAATTTGAGGAA+AGG + chr3_1:14496549-14496568 None:intergenic 20.0%
!!! ATTTGTTTTGTTCTTTTATC+TGG - chr3_1:14496646-14496665 Msa0350020:intron 20.0%
!!! TTTTTTAACTTGTGTAACTA+TGG - chr3_1:14496726-14496745 Msa0350020:intron 20.0%
!! AATGTAATTGTAATTGAAGA+AGG - chr3_1:14496936-14496955 Msa0350020:intron 20.0%
!!! CTATGTTATTTCATATGATT+TGG - chr3_1:14497554-14497573 Msa0350020:CDS 20.0%
!! GACTTAGAATTTGAAATGAT+GGG + chr3_1:14495949-14495968 None:intergenic 25.0%
!! AGACTTAGAATTTGAAATGA+TGG + chr3_1:14495950-14495969 None:intergenic 25.0%
! GTGAATGAAGTATAAAAAAG+GGG + chr3_1:14496362-14496381 None:intergenic 25.0%
!!! AGTTAGTGTCACTTTAAATT+AGG - chr3_1:14496512-14496531 Msa0350020:intron 25.0%
!!! GTTAGTGTCACTTTAAATTA+GGG - chr3_1:14496513-14496532 Msa0350020:intron 25.0%
!!! TTAGTGTCACTTTAAATTAG+GGG - chr3_1:14496514-14496533 Msa0350020:intron 25.0%
! AAAAAACAATTTGAGGAAAG+GGG + chr3_1:14496547-14496566 None:intergenic 25.0%
! AAAGCAAAACTATGACAAAA+TGG + chr3_1:14496600-14496619 None:intergenic 25.0%
! TTATATTTCTTCCATAGAGA+TGG - chr3_1:14496991-14497010 Msa0350020:intron 25.0%
!! AATTTTATGTTCCATCTCTA+TGG + chr3_1:14497005-14497024 None:intergenic 25.0%
! TAGAGATGGAACATAAAATT+TGG - chr3_1:14497005-14497024 Msa0350020:intron 25.0%
! AGAGATGGAACATAAAATTT+GGG - chr3_1:14497006-14497025 Msa0350020:intron 25.0%
! TTTATCATATGTTCCTTCAA+CGG + chr3_1:14497263-14497282 None:intergenic 25.0%
! TGAAGGAACATATGATAAAA+TGG - chr3_1:14497264-14497283 Msa0350020:intron 25.0%
! AAACTTCATGCTAATGATAA+AGG + chr3_1:14497580-14497599 None:intergenic 25.0%
!! GACTTAGAATTTGAAATGAT+GGG + chr3_1:14495949-14495968 None:intergenic 25.0%
!! AGACTTAGAATTTGAAATGA+TGG + chr3_1:14495950-14495969 None:intergenic 25.0%
! GTGAATGAAGTATAAAAAAG+GGG + chr3_1:14496362-14496381 None:intergenic 25.0%
!!! AGTTAGTGTCACTTTAAATT+AGG - chr3_1:14496512-14496531 Msa0350020:intron 25.0%
!!! GTTAGTGTCACTTTAAATTA+GGG - chr3_1:14496513-14496532 Msa0350020:intron 25.0%
!!! TTAGTGTCACTTTAAATTAG+GGG - chr3_1:14496514-14496533 Msa0350020:intron 25.0%
! AAAAAACAATTTGAGGAAAG+GGG + chr3_1:14496547-14496566 None:intergenic 25.0%
! AAAGCAAAACTATGACAAAA+TGG + chr3_1:14496600-14496619 None:intergenic 25.0%
! TTATATTTCTTCCATAGAGA+TGG - chr3_1:14496991-14497010 Msa0350020:intron 25.0%
!! AATTTTATGTTCCATCTCTA+TGG + chr3_1:14497005-14497024 None:intergenic 25.0%
! TAGAGATGGAACATAAAATT+TGG - chr3_1:14497005-14497024 Msa0350020:intron 25.0%
! AGAGATGGAACATAAAATTT+GGG - chr3_1:14497006-14497025 Msa0350020:intron 25.0%
! TTTATCATATGTTCCTTCAA+CGG + chr3_1:14497263-14497282 None:intergenic 25.0%
! TGAAGGAACATATGATAAAA+TGG - chr3_1:14497264-14497283 Msa0350020:intron 25.0%
! AAACTTCATGCTAATGATAA+AGG + chr3_1:14497580-14497599 None:intergenic 25.0%
!! TAGAATTTGAAATGATGGGT+TGG + chr3_1:14495945-14495964 None:intergenic 30.0%
GTAAATCTTGAACCATTAGA+GGG + chr3_1:14496081-14496100 None:intergenic 30.0%
TGTAAATCTTGAACCATTAG+AGG + chr3_1:14496082-14496101 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG - chr3_1:14496105-14496124 Msa0350020:CDS 30.0%
TGACTTTGTAACTTAAGAGA+CGG - chr3_1:14496468-14496487 Msa0350020:intron 30.0%
!! CATAGTTTTGCTTTTGATTC+TGG - chr3_1:14496606-14496625 Msa0350020:intron 30.0%
!! TTTAACTTGTGTAACTATGG+AGG - chr3_1:14496729-14496748 Msa0350020:intron 30.0%
TATATGTTCTTAGAGTGACT+CGG - chr3_1:14496765-14496784 Msa0350020:intron 30.0%
ATGGAACATAAAATTTGGGT+TGG - chr3_1:14497010-14497029 Msa0350020:intron 30.0%
AAGCACATATCATGATTTAC+AGG + chr3_1:14497044-14497063 None:intergenic 30.0%
! AAGTACTGCAAAAGATTATG+AGG + chr3_1:14497220-14497239 None:intergenic 30.0%
TTTGCAGTACTTCAACTATA+TGG - chr3_1:14497228-14497247 Msa0350020:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG - chr3_1:14497229-14497248 Msa0350020:intron 30.0%
AGGAACATATGATAAAATGG+AGG - chr3_1:14497267-14497286 Msa0350020:intron 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG + chr3_1:14497361-14497380 None:intergenic 30.0%
AAACAACTATGTAGCTGAAA+TGG + chr3_1:14497514-14497533 None:intergenic 30.0%
!! GCATAGTTTGTTCTTAATGA+GGG + chr3_1:14497622-14497641 None:intergenic 30.0%
!! TGCATAGTTTGTTCTTAATG+AGG + chr3_1:14497623-14497642 None:intergenic 30.0%
!! TAGAATTTGAAATGATGGGT+TGG + chr3_1:14495945-14495964 None:intergenic 30.0%
GTAAATCTTGAACCATTAGA+GGG + chr3_1:14496081-14496100 None:intergenic 30.0%
TGTAAATCTTGAACCATTAG+AGG + chr3_1:14496082-14496101 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG - chr3_1:14496105-14496124 Msa0350020:CDS 30.0%
TGACTTTGTAACTTAAGAGA+CGG - chr3_1:14496468-14496487 Msa0350020:intron 30.0%
!! CATAGTTTTGCTTTTGATTC+TGG - chr3_1:14496606-14496625 Msa0350020:intron 30.0%
!! TTTAACTTGTGTAACTATGG+AGG - chr3_1:14496729-14496748 Msa0350020:intron 30.0%
TATATGTTCTTAGAGTGACT+CGG - chr3_1:14496765-14496784 Msa0350020:intron 30.0%
ATGGAACATAAAATTTGGGT+TGG - chr3_1:14497010-14497029 Msa0350020:intron 30.0%
AAGCACATATCATGATTTAC+AGG + chr3_1:14497044-14497063 None:intergenic 30.0%
! AAGTACTGCAAAAGATTATG+AGG + chr3_1:14497220-14497239 None:intergenic 30.0%
TTTGCAGTACTTCAACTATA+TGG - chr3_1:14497228-14497247 Msa0350020:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG - chr3_1:14497229-14497248 Msa0350020:intron 30.0%
AGGAACATATGATAAAATGG+AGG - chr3_1:14497267-14497286 Msa0350020:intron 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG + chr3_1:14497361-14497380 None:intergenic 30.0%
AAACAACTATGTAGCTGAAA+TGG + chr3_1:14497514-14497533 None:intergenic 30.0%
!! GCATAGTTTGTTCTTAATGA+GGG + chr3_1:14497622-14497641 None:intergenic 30.0%
!! TGCATAGTTTGTTCTTAATG+AGG + chr3_1:14497623-14497642 None:intergenic 30.0%
CCACAAAATTGTCTTCTTCT+CGG - chr3_1:14495992-14496011 Msa0350020:three_prime_UTR 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG - chr3_1:14496021-14496040 Msa0350020:three_prime_UTR 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG - chr3_1:14496025-14496044 Msa0350020:three_prime_UTR 35.0%
TCAAGCTTCACCTCTAAATT+TGG - chr3_1:14496054-14496073 Msa0350020:three_prime_UTR 35.0%
ATTAGAGGGTCCAAATTTAG+AGG + chr3_1:14496067-14496086 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG - chr3_1:14496066-14496085 Msa0350020:three_prime_UTR 35.0%
ATGGTTCAAGATTTACATGC+TGG - chr3_1:14496085-14496104 Msa0350020:exon 35.0%
!! TTTACATGCTGGTTCAAGTT+TGG - chr3_1:14496096-14496115 Msa0350020:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG - chr3_1:14496120-14496139 Msa0350020:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG + chr3_1:14496164-14496183 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG - chr3_1:14496179-14496198 Msa0350020:CDS 35.0%
!! TCTATGAGTTATTGGTTCAG+TGG - chr3_1:14496437-14496456 Msa0350020:intron 35.0%
!! AGTGACACTAACTGTTTCTA+AGG + chr3_1:14496505-14496524 None:intergenic 35.0%
TGAGAATGATGTTAGTTGCT+AGG - chr3_1:14496700-14496719 Msa0350020:intron 35.0%
!! ACTCAGTGATGATTTTGAGT+CGG + chr3_1:14497082-14497101 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG - chr3_1:14497230-14497249 Msa0350020:intron 35.0%
TATGATGTAAAAGACGCAGA+TGG - chr3_1:14497394-14497413 Msa0350020:CDS 35.0%
GTAGCTGAAATGGCAAATAA+TGG + chr3_1:14497504-14497523 None:intergenic 35.0%
CCACAAAATTGTCTTCTTCT+CGG - chr3_1:14495992-14496011 Msa0350020:three_prime_UTR 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG - chr3_1:14496021-14496040 Msa0350020:three_prime_UTR 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG - chr3_1:14496025-14496044 Msa0350020:three_prime_UTR 35.0%
TCAAGCTTCACCTCTAAATT+TGG - chr3_1:14496054-14496073 Msa0350020:three_prime_UTR 35.0%
ATTAGAGGGTCCAAATTTAG+AGG + chr3_1:14496067-14496086 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG - chr3_1:14496066-14496085 Msa0350020:three_prime_UTR 35.0%
ATGGTTCAAGATTTACATGC+TGG - chr3_1:14496085-14496104 Msa0350020:exon 35.0%
!! TTTACATGCTGGTTCAAGTT+TGG - chr3_1:14496096-14496115 Msa0350020:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG - chr3_1:14496120-14496139 Msa0350020:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG + chr3_1:14496164-14496183 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG - chr3_1:14496179-14496198 Msa0350020:CDS 35.0%
!! TCTATGAGTTATTGGTTCAG+TGG - chr3_1:14496437-14496456 Msa0350020:intron 35.0%
!! AGTGACACTAACTGTTTCTA+AGG + chr3_1:14496505-14496524 None:intergenic 35.0%
TGAGAATGATGTTAGTTGCT+AGG - chr3_1:14496700-14496719 Msa0350020:intron 35.0%
!! ACTCAGTGATGATTTTGAGT+CGG + chr3_1:14497082-14497101 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG - chr3_1:14497230-14497249 Msa0350020:intron 35.0%
TATGATGTAAAAGACGCAGA+TGG - chr3_1:14497394-14497413 Msa0350020:CDS 35.0%
GTAGCTGAAATGGCAAATAA+TGG + chr3_1:14497504-14497523 None:intergenic 35.0%
GATTGAAGACATTGCTGTGT+TGG + chr3_1:14495908-14495927 None:intergenic 40.0%
! CCGAGAAGAAGACAATTTTG+TGG + chr3_1:14495995-14496014 None:intergenic 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG - chr3_1:14496000-14496019 Msa0350020:three_prime_UTR 40.0%
!! CTCAGTGATGATTTTGAGTC+GGG + chr3_1:14497081-14497100 None:intergenic 40.0%
CTTCTCTTCTTGACTGTCAT+TGG - chr3_1:14497129-14497148 Msa0350020:intron 40.0%
TTTCGAAGAGAATGTGCATG+CGG - chr3_1:14497175-14497194 Msa0350020:intron 40.0%
ACAACAGTAGAATGTCCACA+GGG + chr3_1:14497315-14497334 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG + chr3_1:14497316-14497335 None:intergenic 40.0%
TGTGGACATTCTACTGTTGT+TGG - chr3_1:14497315-14497334 Msa0350020:intron 40.0%
ATTGAGGAACTCTTGAAAGC+AGG - chr3_1:14497364-14497383 Msa0350020:intron 40.0%
ATGTAAAAGACGCAGATGGA+CGG - chr3_1:14497398-14497417 Msa0350020:CDS 40.0%
!! GCATTGACTCTTCAGGTTAA+AGG - chr3_1:14497643-14497662 Msa0350020:CDS 40.0%
! GTCTGATGTCTAACTTGTGT+TGG - chr3_1:14497669-14497688 Msa0350020:exon 40.0%
GATTGAAGACATTGCTGTGT+TGG + chr3_1:14495908-14495927 None:intergenic 40.0%
! CCGAGAAGAAGACAATTTTG+TGG + chr3_1:14495995-14496014 None:intergenic 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG - chr3_1:14496000-14496019 Msa0350020:three_prime_UTR 40.0%
!! CTCAGTGATGATTTTGAGTC+GGG + chr3_1:14497081-14497100 None:intergenic 40.0%
CTTCTCTTCTTGACTGTCAT+TGG - chr3_1:14497129-14497148 Msa0350020:intron 40.0%
TTTCGAAGAGAATGTGCATG+CGG - chr3_1:14497175-14497194 Msa0350020:intron 40.0%
ACAACAGTAGAATGTCCACA+GGG + chr3_1:14497315-14497334 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG + chr3_1:14497316-14497335 None:intergenic 40.0%
TGTGGACATTCTACTGTTGT+TGG - chr3_1:14497315-14497334 Msa0350020:intron 40.0%
ATTGAGGAACTCTTGAAAGC+AGG - chr3_1:14497364-14497383 Msa0350020:intron 40.0%
ATGTAAAAGACGCAGATGGA+CGG - chr3_1:14497398-14497417 Msa0350020:CDS 40.0%
!! GCATTGACTCTTCAGGTTAA+AGG - chr3_1:14497643-14497662 Msa0350020:CDS 40.0%
! GTCTGATGTCTAACTTGTGT+TGG - chr3_1:14497669-14497688 Msa0350020:exon 40.0%
!! GCTGAAGGTGCTGGTATTTA+TGG - chr3_1:14496135-14496154 Msa0350020:CDS 45.0%
!! CTGTTGTTGGCTTCATCAGA+AGG - chr3_1:14497328-14497347 Msa0350020:intron 45.0%
! AGGTGACTTGCCGAAAATTG+AGG - chr3_1:14497348-14497367 Msa0350020:intron 45.0%
!! CTATGCAGCATTGACTCTTC+AGG - chr3_1:14497636-14497655 Msa0350020:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG - chr3_1:14496135-14496154 Msa0350020:CDS 45.0%
!! CTGTTGTTGGCTTCATCAGA+AGG - chr3_1:14497328-14497347 Msa0350020:intron 45.0%
! AGGTGACTTGCCGAAAATTG+AGG - chr3_1:14497348-14497367 Msa0350020:intron 45.0%
!! CTATGCAGCATTGACTCTTC+AGG - chr3_1:14497636-14497655 Msa0350020:CDS 45.0%
! TTGAAGAAGGAAAGCGCGAG+TGG - chr3_1:14496949-14496968 Msa0350020:intron 50.0%
AAGCCAAAAGATCCACCCTG+TGG - chr3_1:14497297-14497316 Msa0350020:intron 50.0%
! TGTCCACAGGGTGGATCTTT+TGG + chr3_1:14497303-14497322 None:intergenic 50.0%
ACAGTAGAATGTCCACAGGG+TGG + chr3_1:14497312-14497331 None:intergenic 50.0%
AGCATTAGCCCTATCCAACG+CGG + chr3_1:14497425-14497444 None:intergenic 50.0%
! TTGAAGAAGGAAAGCGCGAG+TGG - chr3_1:14496949-14496968 Msa0350020:intron 50.0%
AAGCCAAAAGATCCACCCTG+TGG - chr3_1:14497297-14497316 Msa0350020:intron 50.0%
! TGTCCACAGGGTGGATCTTT+TGG + chr3_1:14497303-14497322 None:intergenic 50.0%
ACAGTAGAATGTCCACAGGG+TGG + chr3_1:14497312-14497331 None:intergenic 50.0%
AGCATTAGCCCTATCCAACG+CGG + chr3_1:14497425-14497444 None:intergenic 50.0%
!! GGTGTTGATGCTGAAGGTGC+TGG - chr3_1:14496126-14496145 Msa0350020:CDS 55.0%
CGAAGAGAATGTGCATGCGG+TGG - chr3_1:14497178-14497197 Msa0350020:intron 55.0%
!! GGTGTTGATGCTGAAGGTGC+TGG - chr3_1:14496126-14496145 Msa0350020:CDS 55.0%
CGAAGAGAATGTGCATGCGG+TGG - chr3_1:14497178-14497197 Msa0350020:intron 55.0%
ATGGGGATGCTCGCCGTTGA+AGG - chr3_1:14497247-14497266 Msa0350020:intron 60.0%
ATGGACGGACCGCGTTGGAT+AGG - chr3_1:14497413-14497432 Msa0350020:CDS 60.0%
TGGACGGACCGCGTTGGATA+GGG - chr3_1:14497414-14497433 Msa0350020:CDS 60.0%
ATGGGGATGCTCGCCGTTGA+AGG - chr3_1:14497247-14497266 Msa0350020:intron 60.0%
ATGGACGGACCGCGTTGGAT+AGG - chr3_1:14497413-14497432 Msa0350020:CDS 60.0%
TGGACGGACCGCGTTGGATA+GGG - chr3_1:14497414-14497433 Msa0350020:CDS 60.0%
CGCAGATGGACGGACCGCGT+TGG - chr3_1:14497408-14497427 Msa0350020:CDS 70.0%
CGCAGATGGACGGACCGCGT+TGG - chr3_1:14497408-14497427 Msa0350020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 14495854 14497731 14495854 ID=Msa0350020;Name=Msa0350020
chr3_1 mRNA 14495854 14497731 14495854 ID=Msa0350020-mRNA-1;Parent=Msa0350020;Name=Msa0350020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=62|1|1|1|1|1|2|242|179
chr3_1 exon 14495854 14496350 14495854 ID=Msa0350020-mRNA-1:exon:3613;Parent=Msa0350020-mRNA-1
chr3_1 exon 14497385 14497731 14497385 ID=Msa0350020-mRNA-1:exon:3612;Parent=Msa0350020-mRNA-1
chr3_1 five_prime_UTR 14497670 14497731 14497670 ID=Msa0350020-mRNA-1:five_prime_utr;Parent=Msa0350020-mRNA-1
chr3_1 CDS 14497385 14497669 14497385 ID=Msa0350020-mRNA-1:cds;Parent=Msa0350020-mRNA-1
chr3_1 CDS 14496096 14496350 14496096 ID=Msa0350020-mRNA-1:cds;Parent=Msa0350020-mRNA-1
chr3_1 three_prime_UTR 14495854 14496095 14495854 ID=Msa0350020-mRNA-1:three_prime_utr;Parent=Msa0350020-mRNA-1
Gene Sequence

>Msa0350020

ATGTCTTCAATCACATGCATAACTCACCAACCCATCATTTCAAATTCTAAGTCTTTGATCACTTCACAAGTTTCTTCCACAAAATTGTCTTCTTCTCGGTTTCTTGGTATTAGAGTTAAGAGTGTTGGATGGTCAAGCTCAAGCTTCACCTCTAAATTTGGACCCTCTAATGGTTCAAGATTTACATGCTGGTTCAAGTTTGGTAAAAATGGTGTTGATGCTGAAGGTGCTGGTATTTATGGTAGCCAGTCTCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAACTATATGGGGATGCTCGCCGTTGAAGGAACATATGATAAAATGGAGGCTCTTCTAAGCCAAAAGATCCACCCTGTGGACATTCTACTGTTGTTGGCTTCATCAGAAGGTGACTTGCCGAAAATTGAGGAACTCTTGAAAGCAGGAGCAAAATATGATGTAAAAGACGCAGATGGACGGACCGCGTTGGATAGGGCTAATGCTGAAGTTAAAGATTTCATTCTTAATTTTTCAGTGCAGAGAGCATGA

Protein sequence

>Msa0350020

MSSITCITHQPIISNSKSLITSQVSSTKLSSSRFLGIRVKSVGWSSSSFTSKFGPSNGSRFTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVDILLLLASSEGDLPKIEELLKAGAKYDVKDADGRTALDRANAEVKDFILNFSVQRA*