AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204030 MtrunA17_Chr2g0302051 92.262 168 9 2 1 166 1 166 2.73e-100 285
Msa0204030 MtrunA17_Chr5g0417481 35.714 154 87 5 19 164 14 163 1.85e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204030 AT1G48350.1 77.143 140 32 0 27 166 31 170 4.94e-73 217
Msa0204030 AT1G14205.1 38.158 152 84 3 20 164 19 167 8.74e-22 86.7
Msa0204030 AT3G17626.1 71.053 38 11 0 113 150 10 47 1.38e-12 59.7

Find 64 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAGTTCTTGCATATTA+TGG 0.122595 2_1:-28832469 Msa0204030:three_prime_UTR
GCAAAATCCTGTCTGGAAAT+AGG 0.169851 2_1:-28832758 Msa0204030:CDS
TAAAGAGGAAGAAGATGAAT+TGG 0.263533 2_1:+28835799 None:intergenic
CACAGACAATCTTGGTCTTT+CGG 0.279312 2_1:+28833805 None:intergenic
ACAGACAATCTTGGTCTTTC+GGG 0.288767 2_1:+28833806 None:intergenic
CAAGAGTTCTTGCATATTAT+GGG 0.294954 2_1:-28832468 Msa0204030:three_prime_UTR
TATGCAAGAACTCTTGTAAA+AGG 0.296836 2_1:+28832475 None:intergenic
CAAAATCCTGTCTGGAAATA+GGG 0.298158 2_1:-28832757 Msa0204030:CDS
CAACTATCACTCCACTAATA+AGG 0.315065 2_1:+28835938 None:intergenic
TTCTTCCTCTTTATCTTTCG+TGG 0.341230 2_1:-28835789 Msa0204030:CDS
ACAGTGAAGAGGAGGAAGAA+GGG 0.353557 2_1:+28835843 None:intergenic
AACAACTAAACACTAAGAAA+TGG 0.401891 2_1:+28832502 None:intergenic
TTCCCTTCGAGTAGTGGCTT+TGG 0.404149 2_1:+28835760 None:intergenic
AACAGTGAAGAGGAGGAAGA+AGG 0.416398 2_1:+28835842 None:intergenic
TTCAGCAGAGGCCTTATTAG+TGG 0.417126 2_1:-28835949 Msa0204030:five_prime_UTR
TTGGACAAAGAGATGCTTGT+TGG 0.418067 2_1:+28833775 None:intergenic
TTGTTTATTGTTTAAATCCT+CGG 0.420140 2_1:+28832599 None:intergenic
TATCAGGAACTTACAATTGT+AGG 0.452312 2_1:+28833665 None:intergenic
AAAGAGGAAGAAGATGAATT+GGG 0.463016 2_1:+28835800 None:intergenic
TGGGGTGCTTAAAACGCAAA+TGG 0.466124 2_1:-28832449 Msa0204030:three_prime_UTR
AATCATTGCAAAATCCTGTC+TGG 0.467654 2_1:-28832765 Msa0204030:CDS
TGAAGAGGAGGAAGAAGGGG+AGG 0.468940 2_1:+28835847 None:intergenic
TGTGATCCCTATTTCCAGAC+AGG 0.474164 2_1:+28832751 None:intergenic
GAAGAAGATGAATTGGGATT+CGG 0.480622 2_1:+28835806 None:intergenic
GCTTTAACACGACCATGGTA+TGG 0.480675 2_1:+28832701 None:intergenic
GAAGAGGAGGAAGAAGGGGA+GGG 0.485629 2_1:+28835848 None:intergenic
CAGTGAAGAGGAGGAAGAAG+GGG 0.488310 2_1:+28835844 None:intergenic
ATTAGTGGAGTGATAGTTGA+AGG 0.494489 2_1:-28835934 Msa0204030:five_prime_UTR
GATCGAAACACAGACAATCT+TGG 0.494991 2_1:+28833797 None:intergenic
CCTTCTTTCTGATACGAACA+TGG 0.507027 2_1:+28835723 None:intergenic
TCTGTCTTCCCTTCGAGTAG+TGG 0.511964 2_1:+28835754 None:intergenic
GAAGAGTTGAACTTCACCTC+TGG 0.512553 2_1:-28833689 Msa0204030:CDS
ATTTAATTGAGCAAAGGTAA+AGG 0.526835 2_1:-28835972 Msa0204030:five_prime_UTR
AACTGTGAACAGTGAAGAGG+AGG 0.543804 2_1:+28835835 None:intergenic
GGAGTGATAGTTGAAGGATA+AGG 0.544074 2_1:-28835928 Msa0204030:five_prime_UTR
CCATGTTCGTATCAGAAAGA+AGG 0.545328 2_1:-28835723 Msa0204030:intron
AGGGAAATGTGCAAGAATGA+AGG 0.549195 2_1:+28835867 None:intergenic
TCTTGGTGTCGTCAATCACT+TGG 0.549933 2_1:+28833756 None:intergenic
GCTGATGCGGCACGCGAACA+TGG 0.549988 2_1:-28832674 Msa0204030:CDS
TGGATATATAAATATTAACT+AGG 0.561729 2_1:+28832522 None:intergenic
GCAAGAACTCTTGTAAAAGG+TGG 0.562995 2_1:+28832478 None:intergenic
ACAAAGGTAGCCTTTGACAG+AGG 0.569891 2_1:-28832731 Msa0204030:CDS
TGGGTAACCACCTCTGTCAA+AGG 0.571658 2_1:+28832721 None:intergenic
TTCAACCACGAAAGATAAAG+AGG 0.573055 2_1:+28835784 None:intergenic
TGAAGCAAGTGTATGCATCT+TGG 0.577835 2_1:+28833739 None:intergenic
CTTTAACACGACCATGGTAT+GGG 0.578869 2_1:+28832702 None:intergenic
GCTTCAGGAAGTAGCAAAGA+GGG 0.581508 2_1:-28832795 Msa0204030:intron
TTCAGCTTCAACAATGCAGA+AGG 0.583407 2_1:-28833720 Msa0204030:CDS
ATGTTTAAATTTGTAAGCCG+AGG 0.587892 2_1:-28832616 Msa0204030:three_prime_UTR
AAGAGTTCTTGCATATTATG+GGG 0.590787 2_1:-28832467 Msa0204030:three_prime_UTR
AAGCCAAAGCCACTACTCGA+AGG 0.598125 2_1:-28835763 Msa0204030:CDS
TTATTTATTTAATTGAGCAA+AGG 0.601063 2_1:-28835978 Msa0204030:five_prime_UTR
TGTTAAAGCTATTGCTGATG+CGG 0.606754 2_1:-28832687 Msa0204030:CDS
AGCCAAAGCCACTACTCGAA+GGG 0.612684 2_1:-28835762 Msa0204030:CDS
AAGGTAGCCTTTGACAGAGG+TGG 0.614954 2_1:-28832728 Msa0204030:CDS
CAAAGGTAAAGGTTCAGCAG+AGG 0.642122 2_1:-28835961 Msa0204030:five_prime_UTR
TAGAACTGTGAACAGTGAAG+AGG 0.653866 2_1:+28835832 None:intergenic
TGCTTCAGGAAGTAGCAAAG+AGG 0.655766 2_1:-28832796 Msa0204030:intron
TCAGGAAGTAGCAAAGAGGG+TGG 0.657714 2_1:-28832792 Msa0204030:intron
CAGGAAGTAGCAAAGAGGGT+GGG 0.658309 2_1:-28832791 Msa0204030:CDS
ACTTACAATTGTAGGACCAG+AGG 0.688517 2_1:+28833673 None:intergenic
AGAGGTGGTTACCCATACCA+TGG 0.700410 2_1:-28832713 Msa0204030:CDS
CAATAGCTTTAACACGACCA+TGG 0.706920 2_1:+28832696 None:intergenic
TCTGGAAATAGGGATCACAA+AGG 0.730190 2_1:-28832747 Msa0204030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAAATCTTGAT+TGG - chr2_1:28833460-28833479 Msa0204030:intron 10.0%
!! TAAAAAAAAAAATCTTGATT+GGG - chr2_1:28833461-28833480 Msa0204030:intron 10.0%
!! CAATTAAATTATTATCAATT+TGG + chr2_1:28833650-28833669 None:intergenic 10.0%
!!! ATTGATAATAATTTAATTGA+AGG - chr2_1:28833651-28833670 Msa0204030:intron 10.0%
!!! TTGATAATAATTTAATTGAA+GGG - chr2_1:28833652-28833671 Msa0204030:intron 10.0%
!! AAAATATAGATGTATATTTA+CGG + chr2_1:28833828-28833847 None:intergenic 10.0%
!! AATATATTAGTTATTACAAT+TGG + chr2_1:28835201-28835220 None:intergenic 10.0%
!! TTATTTATTTAATTGAGCAA+AGG - chr2_1:28832432-28832451 Msa0204030:three_prime_UTR 15.0%
!! ACAATTTATCAAAAGAATAA+TGG - chr2_1:28833413-28833432 Msa0204030:intron 15.0%
!! AAATATAGATGTATATTTAC+GGG + chr2_1:28833827-28833846 None:intergenic 15.0%
!!! AAATCATTTTATGATTTTTC+AGG - chr2_1:28834570-28834589 Msa0204030:intron 15.0%
!! TAATAAGTATTTAAGAAAAC+AGG + chr2_1:28834875-28834894 None:intergenic 15.0%
!! TGGATATATAAATATTAACT+AGG + chr2_1:28835891-28835910 None:intergenic 15.0%
!! GAGTATTTGTTTGTAAATTA+TGG - chr2_1:28832771-28832790 Msa0204030:CDS 20.0%
!!! TTACTGGTTAGATTAATATT+TGG - chr2_1:28832871-28832890 Msa0204030:intron 20.0%
!!! TACTGGTTAGATTAATATTT+GGG - chr2_1:28832872-28832891 Msa0204030:intron 20.0%
!! TTGAAAATTTGCAACATTAA+GGG + chr2_1:28832950-28832969 None:intergenic 20.0%
!! TTTGAAAATTTGCAACATTA+AGG + chr2_1:28832951-28832970 None:intergenic 20.0%
!! ATTTAATTGAAGGGTAAAAT+TGG - chr2_1:28833661-28833680 Msa0204030:intron 20.0%
!! AAGCAACAATATACAATAAT+AGG + chr2_1:28833763-28833782 None:intergenic 20.0%
!!! CTTTTGTTAATTCTGTTATT+TGG - chr2_1:28833780-28833799 Msa0204030:CDS 20.0%
!!! CTTGATAATGATAAAAGATA+CGG - chr2_1:28834048-28834067 Msa0204030:intron 20.0%
!!! TTGATAATGATAAAAGATAC+GGG - chr2_1:28834049-28834068 Msa0204030:intron 20.0%
!!! TGTAAATTTGTAAGTTTTTG+TGG - chr2_1:28834283-28834302 Msa0204030:intron 20.0%
!! GAAATAAAAGAAAGTAACAA+AGG - chr2_1:28834346-28834365 Msa0204030:intron 20.0%
!!! TTTAGCTTACTTTAAGTTTT+AGG - chr2_1:28834387-28834406 Msa0204030:intron 20.0%
!! TATAAGAGAAAACTTATATC+AGG + chr2_1:28834428-28834447 None:intergenic 20.0%
!! TCTTATATATAAAGAGATCA+TGG - chr2_1:28834441-28834460 Msa0204030:intron 20.0%
!!! TGAAATGATGTTTGTTAAAT+TGG - chr2_1:28834506-28834525 Msa0204030:intron 20.0%
!!! AGGAATTTTTATTATCATCA+GGG + chr2_1:28834855-28834874 None:intergenic 20.0%
!!! TTTAGTTTTATGCATTGTTA+TGG + chr2_1:28834913-28834932 None:intergenic 20.0%
!! ATATATCTTTCATTGAAATC+TGG + chr2_1:28834968-28834987 None:intergenic 20.0%
!!! TATCCAAGAATAAACTTTTT+GGG + chr2_1:28835060-28835079 None:intergenic 20.0%
!!! TTATCCAAGAATAAACTTTT+TGG + chr2_1:28835061-28835080 None:intergenic 20.0%
!!! AATTTTCGTTTACTAAATGA+CGG - chr2_1:28835569-28835588 Msa0204030:intron 20.0%
!! TTGTTTATTGTTTAAATCCT+CGG + chr2_1:28835814-28835833 None:intergenic 20.0%
! ATTTAATTGAGCAAAGGTAA+AGG - chr2_1:28832438-28832457 Msa0204030:three_prime_UTR 25.0%
! AAAGTGAAAGAGAAGAATTA+CGG + chr2_1:28832734-28832753 None:intergenic 25.0%
! AACAAATACTCAAATTCAAG+TGG + chr2_1:28832762-28832781 None:intergenic 25.0%
! AGACAAATGTTAGTATTTAC+TGG - chr2_1:28832855-28832874 Msa0204030:intron 25.0%
!!! TCATGAACTATTTTGACTAA+CGG + chr2_1:28832994-28833013 None:intergenic 25.0%
! AATAAAAACCCTAACATGTT+GGG + chr2_1:28833056-28833075 None:intergenic 25.0%
!!! CTGATTTTGGAGAATTTTAA+AGG - chr2_1:28833079-28833098 Msa0204030:intron 25.0%
! AAATATTTACTCATTCGTTC+AGG - chr2_1:28833219-28833238 Msa0204030:intron 25.0%
! CTAAGTTCATATTGATGTAT+AGG - chr2_1:28833385-28833404 Msa0204030:intron 25.0%
! AAAAAATCTTGATTGGGTAA+AGG - chr2_1:28833467-28833486 Msa0204030:intron 25.0%
! AAAATACACAATGCTTTGAT+TGG - chr2_1:28833566-28833585 Msa0204030:intron 25.0%
! AAATGATTAAAATCACGAGA+AGG + chr2_1:28833626-28833645 None:intergenic 25.0%
! AAAATTACTATCCAAACACT+TGG - chr2_1:28833689-28833708 Msa0204030:CDS 25.0%
! TTATGTGTTAGTTAGAACAT+TGG - chr2_1:28833719-28833738 Msa0204030:CDS 25.0%
! CACATTTAATCTACTAAAAG+TGG + chr2_1:28833854-28833873 None:intergenic 25.0%
!! TCAATACTAAAGCTTCTTTT+TGG - chr2_1:28833982-28834001 Msa0204030:intron 25.0%
!! ATTTTGTTGCATTGTCATAA+TGG - chr2_1:28834146-28834165 Msa0204030:intron 25.0%
! GGATTATAAAGCACATTATT+AGG + chr2_1:28834172-28834191 None:intergenic 25.0%
! ATTGAGAGAAAGTTCATAAA+AGG - chr2_1:28834200-28834219 Msa0204030:intron 25.0%
! AAAGTAACAAAGGAAGATAA+AGG - chr2_1:28834356-28834375 Msa0204030:intron 25.0%
!!! TTTATGATTTTTCAGGTTGA+AGG - chr2_1:28834577-28834596 Msa0204030:intron 25.0%
! TTTATTATCATCAGGGAATA+GGG + chr2_1:28834848-28834867 None:intergenic 25.0%
!! TTTTATTATCATCAGGGAAT+AGG + chr2_1:28834849-28834868 None:intergenic 25.0%
!! CAGGAATTTTTATTATCATC+AGG + chr2_1:28834856-28834875 None:intergenic 25.0%
!!! GAATAAACTTTTTGGGTAAT+AGG + chr2_1:28835053-28835072 None:intergenic 25.0%
! TTACCCAAAAAGTTTATTCT+TGG - chr2_1:28835054-28835073 Msa0204030:intron 25.0%
! TGACACTAGAAATTAAATCA+TGG - chr2_1:28835093-28835112 Msa0204030:intron 25.0%
! TAGAAATTAAATCATGGAGA+AGG - chr2_1:28835099-28835118 Msa0204030:intron 25.0%
! TTCTGTAAGTAATATACTCA+AGG + chr2_1:28835141-28835160 None:intergenic 25.0%
! TTAGTTATTACAATTGGAAG+TGG + chr2_1:28835195-28835214 None:intergenic 25.0%
!! TTTCATTTTCATTGATCACA+AGG - chr2_1:28835230-28835249 Msa0204030:intron 25.0%
!! TTCATTTTCATTGATCACAA+GGG - chr2_1:28835231-28835250 Msa0204030:intron 25.0%
! ATATGTTCAGTAGCTATTAT+GGG + chr2_1:28835259-28835278 None:intergenic 25.0%
!! AAAAATGTCACTTGAAAATG+AGG + chr2_1:28835854-28835873 None:intergenic 25.0%
! AACAACTAAACACTAAGAAA+TGG + chr2_1:28835911-28835930 None:intergenic 25.0%
AAAGAGGAAGAAGATGAATT+GGG + chr2_1:28832613-28832632 None:intergenic 30.0%
TAAAGAGGAAGAAGATGAAT+TGG + chr2_1:28832614-28832633 None:intergenic 30.0%
AAATACTCAAATTCAAGTGG+TGG + chr2_1:28832759-28832778 None:intergenic 30.0%
! TTATGGTTTGTATTCGTTGA+TGG - chr2_1:28832788-28832807 Msa0204030:CDS 30.0%
GTTAGTCAAAATAGTTCATG+AGG - chr2_1:28832993-28833012 Msa0204030:intron 30.0%
CAATAAAAACCCTAACATGT+TGG + chr2_1:28833057-28833076 None:intergenic 30.0%
! CAACATGTTAGGGTTTTTAT+TGG - chr2_1:28833055-28833074 Msa0204030:intron 30.0%
!! GGTTTTTATTGGTCTGATTT+TGG - chr2_1:28833066-28833085 Msa0204030:intron 30.0%
TGAACTTAGAATAAGAACAC+AGG + chr2_1:28833374-28833393 None:intergenic 30.0%
! ATAAGAGTATACCAAGTGTT+TGG + chr2_1:28833703-28833722 None:intergenic 30.0%
TAGATTAAATGTGCGTTTGA+GGG - chr2_1:28833861-28833880 Msa0204030:intron 30.0%
TTACTGATATCATGTTTGAC+AGG - chr2_1:28834075-28834094 Msa0204030:intron 30.0%
ACTTTCTCTCAATGAAATTG+AGG + chr2_1:28834193-28834212 None:intergenic 30.0%
TACTTGATTCATTGAGAATG+AGG - chr2_1:28834240-28834259 Msa0204030:intron 30.0%
!!! GCTTACTTTAAGTTTTAGGA+TGG - chr2_1:28834391-28834410 Msa0204030:intron 30.0%
TGATATGATGAATTATGCAG+TGG - chr2_1:28834534-28834553 Msa0204030:intron 30.0%
GATATGATGAATTATGCAGT+GGG - chr2_1:28834535-28834554 Msa0204030:intron 30.0%
TATCAGGAACTTACAATTGT+AGG + chr2_1:28834748-28834767 None:intergenic 30.0%
TTATTATCATCAGGGAATAG+GGG + chr2_1:28834847-28834866 None:intergenic 30.0%
AAATTAAATCATGGAGAAGG+AGG - chr2_1:28835102-28835121 Msa0204030:intron 30.0%
AAAAGAACTTCAGATGCAAA+GGG + chr2_1:28835172-28835191 None:intergenic 30.0%
TATGTTCAGTAGCTATTATG+GGG + chr2_1:28835258-28835277 None:intergenic 30.0%
CATATGTTCAGTAGCTATTA+TGG + chr2_1:28835260-28835279 None:intergenic 30.0%
TAATAGCTACTGAACATATG+AGG - chr2_1:28835260-28835279 Msa0204030:intron 30.0%
ATTTGCTTGGTTGAACTTAT+TGG + chr2_1:28835365-28835384 None:intergenic 30.0%
AATAAGTTCAACCAAGCAAA+TGG - chr2_1:28835364-28835383 Msa0204030:intron 30.0%
ATGTTTAAATTTGTAAGCCG+AGG - chr2_1:28835794-28835813 Msa0204030:CDS 30.0%
TATGCAAGAACTCTTGTAAA+AGG + chr2_1:28835938-28835957 None:intergenic 30.0%
ACAAGAGTTCTTGCATATTA+TGG - chr2_1:28835941-28835960 Msa0204030:five_prime_UTR 30.0%
CAAGAGTTCTTGCATATTAT+GGG - chr2_1:28835942-28835961 Msa0204030:five_prime_UTR 30.0%
AAGAGTTCTTGCATATTATG+GGG - chr2_1:28835943-28835962 Msa0204030:five_prime_UTR 30.0%
CAACTATCACTCCACTAATA+AGG + chr2_1:28832475-28832494 None:intergenic 35.0%
ATTAGTGGAGTGATAGTTGA+AGG - chr2_1:28832476-28832495 Msa0204030:three_prime_UTR 35.0%
GAAGAAGATGAATTGGGATT+CGG + chr2_1:28832607-28832626 None:intergenic 35.0%
TTCTTCCTCTTTATCTTTCG+TGG - chr2_1:28832621-28832640 Msa0204030:three_prime_UTR 35.0%
TTCAACCACGAAAGATAAAG+AGG + chr2_1:28832629-28832648 None:intergenic 35.0%
TTTGCAATTTCGCTACATTG+AGG - chr2_1:28833141-28833160 Msa0204030:intron 35.0%
TGCGTTAGTTAAGAAGTTAG+AGG + chr2_1:28833257-28833276 None:intergenic 35.0%
TTCTAGGTACAATGACAAAG+CGG - chr2_1:28833309-28833328 Msa0204030:intron 35.0%
GTAGATTAAATGTGCGTTTG+AGG - chr2_1:28833860-28833879 Msa0204030:intron 35.0%
TTCCAAAAGCAACTCTCTTA+TGG - chr2_1:28833934-28833953 Msa0204030:intron 35.0%
!! TTCCATAAGAGAGTTGCTTT+TGG + chr2_1:28833939-28833958 None:intergenic 35.0%
! TCATGTTTGACAGGACATTT+TGG - chr2_1:28834084-28834103 Msa0204030:intron 35.0%
!!! ACATTTTGGTTTTGCTTCTC+TGG - chr2_1:28834098-28834117 Msa0204030:intron 35.0%
ATATACTCAAGGAACCCAAA+GGG + chr2_1:28835130-28835149 None:intergenic 35.0%
AATATACTCAAGGAACCCAA+AGG + chr2_1:28835131-28835150 None:intergenic 35.0%
GAAAAGAACTTCAGATGCAA+AGG + chr2_1:28835173-28835192 None:intergenic 35.0%
TGTTGTAGAAATCCACGATA+TGG + chr2_1:28835311-28835330 None:intergenic 35.0%
ATATCGTGGATTTCTACAAC+AGG - chr2_1:28835310-28835329 Msa0204030:intron 35.0%
TATCGTGGATTTCTACAACA+GGG - chr2_1:28835311-28835330 Msa0204030:intron 35.0%
!!! ATTCCAGGGGAGTTTTTTTA+AGG + chr2_1:28835339-28835358 None:intergenic 35.0%
AACTTATTGGTAGATTCCAG+GGG + chr2_1:28835352-28835371 None:intergenic 35.0%
GAACTTATTGGTAGATTCCA+GGG + chr2_1:28835353-28835372 None:intergenic 35.0%
TGAACTTATTGGTAGATTCC+AGG + chr2_1:28835354-28835373 None:intergenic 35.0%
!! GTTTTTGAAGACCATTTGCT+TGG + chr2_1:28835378-28835397 None:intergenic 35.0%
CTTTAAGCAAGGAAGATTGA+GGG + chr2_1:28835523-28835542 None:intergenic 35.0%
!! GATACAACAAGCTTTAAGCA+AGG + chr2_1:28835534-28835553 None:intergenic 35.0%
CAATACAGTTTGAAAGGATC+AGG + chr2_1:28835596-28835615 None:intergenic 35.0%
CTGAAGCAATACAGTTTGAA+AGG + chr2_1:28835602-28835621 None:intergenic 35.0%
CTTTCAAACTGTATTGCTTC+AGG - chr2_1:28835600-28835619 Msa0204030:intron 35.0%
AATCATTGCAAAATCCTGTC+TGG - chr2_1:28835645-28835664 Msa0204030:intron 35.0%
CAAAATCCTGTCTGGAAATA+GGG - chr2_1:28835653-28835672 Msa0204030:intron 35.0%
TGTTAAAGCTATTGCTGATG+CGG - chr2_1:28835723-28835742 Msa0204030:intron 35.0%
!!! AATGCTGATTTTAGAACTCG+AGG + chr2_1:28835762-28835781 None:intergenic 35.0%
GGAGTGATAGTTGAAGGATA+AGG - chr2_1:28832482-28832501 Msa0204030:three_prime_UTR 40.0%
AGGGAAATGTGCAAGAATGA+AGG + chr2_1:28832546-28832565 None:intergenic 40.0%
TAGAACTGTGAACAGTGAAG+AGG + chr2_1:28832581-28832600 None:intergenic 40.0%
CCTTCTTTCTGATACGAACA+TGG + chr2_1:28832690-28832709 None:intergenic 40.0%
CCATGTTCGTATCAGAAAGA+AGG - chr2_1:28832687-28832706 Msa0204030:CDS 40.0%
GCAACATTAAGGGACTATTG+TGG + chr2_1:28832940-28832959 None:intergenic 40.0%
AACGTAGTCCCAACATGTTA+GGG - chr2_1:28833045-28833064 Msa0204030:intron 40.0%
! CATTCGTTCAGGTTTGAACT+AGG - chr2_1:28833230-28833249 Msa0204030:intron 40.0%
TACCTAGAACTGTATCCACT+GGG + chr2_1:28833298-28833317 None:intergenic 40.0%
! AGCATTGTGTATTTTCGCGA+AGG + chr2_1:28833525-28833544 None:intergenic 40.0%
! GGAGAGTACAAAACTAGTCA+AGG + chr2_1:28833806-28833825 None:intergenic 40.0%
TACTCTCGAAGCAAGATTTG+AGG - chr2_1:28834011-28834030 Msa0204030:intron 40.0%
ACAAAGGAAGATAAAGGAGC+AGG - chr2_1:28834362-28834381 Msa0204030:intron 40.0%
! ACAGACAATCTTGGTCTTTC+GGG + chr2_1:28834607-28834626 None:intergenic 40.0%
! CACAGACAATCTTGGTCTTT+CGG + chr2_1:28834608-28834627 None:intergenic 40.0%
GATCGAAACACAGACAATCT+TGG + chr2_1:28834616-28834635 None:intergenic 40.0%
TTGGACAAAGAGATGCTTGT+TGG + chr2_1:28834638-28834657 None:intergenic 40.0%
TGAAGCAAGTGTATGCATCT+TGG + chr2_1:28834674-28834693 None:intergenic 40.0%
TTCAGCTTCAACAATGCAGA+AGG - chr2_1:28834690-28834709 Msa0204030:intron 40.0%
ACTTACAATTGTAGGACCAG+AGG + chr2_1:28834740-28834759 None:intergenic 40.0%
GAGAAATGTAACAGCGTATC+AGG + chr2_1:28834764-28834783 None:intergenic 40.0%
ACACAACACTGAGTTCAATC+TGG + chr2_1:28834807-28834826 None:intergenic 40.0%
GTTCCTTAAAAAAACTCCCC+TGG - chr2_1:28835333-28835352 Msa0204030:intron 40.0%
! GCTTTAAGCAAGGAAGATTG+AGG + chr2_1:28835524-28835543 None:intergenic 40.0%
GCAAAATCCTGTCTGGAAAT+AGG - chr2_1:28835652-28835671 Msa0204030:intron 40.0%
TCTGGAAATAGGGATCACAA+AGG - chr2_1:28835663-28835682 Msa0204030:intron 40.0%
CTTTAACACGACCATGGTAT+GGG + chr2_1:28835711-28835730 None:intergenic 40.0%
!! CAATAGCTTTAACACGACCA+TGG + chr2_1:28835717-28835736 None:intergenic 40.0%
GCAAGAACTCTTGTAAAAGG+TGG + chr2_1:28835935-28835954 None:intergenic 40.0%
CAAAGGTAAAGGTTCAGCAG+AGG - chr2_1:28832449-28832468 Msa0204030:three_prime_UTR 45.0%
!! TTCAGCAGAGGCCTTATTAG+TGG - chr2_1:28832461-28832480 Msa0204030:three_prime_UTR 45.0%
ACAGTGAAGAGGAGGAAGAA+GGG + chr2_1:28832570-28832589 None:intergenic 45.0%
AACAGTGAAGAGGAGGAAGA+AGG + chr2_1:28832571-28832590 None:intergenic 45.0%
AACTGTGAACAGTGAAGAGG+AGG + chr2_1:28832578-28832597 None:intergenic 45.0%
CAACGTAGTCCCAACATGTT+AGG - chr2_1:28833044-28833063 Msa0204030:intron 45.0%
CGCTACATTGAGGACTATTG+TGG - chr2_1:28833151-28833170 Msa0204030:intron 45.0%
ACCTAGAACTGTATCCACTG+GGG + chr2_1:28833297-28833316 None:intergenic 45.0%
GTACCTAGAACTGTATCCAC+TGG + chr2_1:28833299-28833318 None:intergenic 45.0%
!! TCTTGGTGTCGTCAATCACT+TGG + chr2_1:28834657-28834676 None:intergenic 45.0%
GAAGAGTTGAACTTCACCTC+TGG - chr2_1:28834721-28834740 Msa0204030:intron 45.0%
TGATTGCAGACATGATCACG+AGG - chr2_1:28834936-28834955 Msa0204030:intron 45.0%
GATTGCAGACATGATCACGA+GGG - chr2_1:28834937-28834956 Msa0204030:intron 45.0%
TGCTTCAGGAAGTAGCAAAG+AGG - chr2_1:28835614-28835633 Msa0204030:intron 45.0%
GCTTCAGGAAGTAGCAAAGA+GGG - chr2_1:28835615-28835634 Msa0204030:intron 45.0%
TGTGATCCCTATTTCCAGAC+AGG + chr2_1:28835662-28835681 None:intergenic 45.0%
ACAAAGGTAGCCTTTGACAG+AGG - chr2_1:28835679-28835698 Msa0204030:intron 45.0%
GCTTTAACACGACCATGGTA+TGG + chr2_1:28835712-28835731 None:intergenic 45.0%
! TGGGGTGCTTAAAACGCAAA+TGG - chr2_1:28835961-28835980 Msa0204030:five_prime_UTR 45.0%
!! AATTAAATTATTATCAATTT+GGG + chr2_1:28833649-28833668 None:intergenic 5.0%
CAGTGAAGAGGAGGAAGAAG+GGG + chr2_1:28832569-28832588 None:intergenic 50.0%
AAGCCAAAGCCACTACTCGA+AGG - chr2_1:28832647-28832666 Msa0204030:exon 50.0%
AGCCAAAGCCACTACTCGAA+GGG - chr2_1:28832648-28832667 Msa0204030:exon 50.0%
TTCCCTTCGAGTAGTGGCTT+TGG + chr2_1:28832653-28832672 None:intergenic 50.0%
TCTGTCTTCCCTTCGAGTAG+TGG + chr2_1:28832659-28832678 None:intergenic 50.0%
AGAACTGTATCCACTGGGGT+GGG + chr2_1:28833293-28833312 None:intergenic 50.0%
TAGAACTGTATCCACTGGGG+TGG + chr2_1:28833294-28833313 None:intergenic 50.0%
ACCCCAGTGGATACAGTTCT+AGG - chr2_1:28833293-28833312 Msa0204030:intron 50.0%
ATGGAGAAGGAGGAACCCTT+TGG - chr2_1:28835112-28835131 Msa0204030:intron 50.0%
TGGAGAAGGAGGAACCCTTT+GGG - chr2_1:28835113-28835132 Msa0204030:intron 50.0%
!! GCATTGACTCGAAAGCACAG+TGG - chr2_1:28835282-28835301 Msa0204030:intron 50.0%
TCAGGAAGTAGCAAAGAGGG+TGG - chr2_1:28835618-28835637 Msa0204030:intron 50.0%
CAGGAAGTAGCAAAGAGGGT+GGG - chr2_1:28835619-28835638 Msa0204030:intron 50.0%
AAGGTAGCCTTTGACAGAGG+TGG - chr2_1:28835682-28835701 Msa0204030:intron 50.0%
TGGGTAACCACCTCTGTCAA+AGG + chr2_1:28835692-28835711 None:intergenic 50.0%
AGAGGTGGTTACCCATACCA+TGG - chr2_1:28835697-28835716 Msa0204030:intron 50.0%
GAAGAGGAGGAAGAAGGGGA+GGG + chr2_1:28832565-28832584 None:intergenic 55.0%
TGAAGAGGAGGAAGAAGGGG+AGG + chr2_1:28832566-28832585 None:intergenic 55.0%
GCACAGTGGCTACCATATCG+TGG - chr2_1:28835296-28835315 Msa0204030:intron 55.0%
AGTTGAGCTACCCACCCCAG+TGG - chr2_1:28833280-28833299 Msa0204030:intron 60.0%
GCTGATGCGGCACGCGAACA+TGG - chr2_1:28835736-28835755 Msa0204030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 28832428 28836004 28832428 ID=Msa0204030;Name=Msa0204030
chr2_1 mRNA 28832428 28836004 28832428 ID=Msa0204030-mRNA-1;Parent=Msa0204030;Name=Msa0204030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=92|1|1|1|1|1|3|233|166
chr2_1 exon 28832428 28832810 28832428 ID=Msa0204030-mRNA-1:exon:10379;Parent=Msa0204030-mRNA-1
chr2_1 exon 28833679 28833840 28833679 ID=Msa0204030-mRNA-1:exon:10378;Parent=Msa0204030-mRNA-1
chr2_1 exon 28835724 28836004 28835724 ID=Msa0204030-mRNA-1:exon:10377;Parent=Msa0204030-mRNA-1
chr2_1 five_prime_UTR 28835913 28836004 28835913 ID=Msa0204030-mRNA-1:five_prime_utr;Parent=Msa0204030-mRNA-1
chr2_1 CDS 28835724 28835912 28835724 ID=Msa0204030-mRNA-1:cds;Parent=Msa0204030-mRNA-1
chr2_1 CDS 28833679 28833840 28833679 ID=Msa0204030-mRNA-1:cds;Parent=Msa0204030-mRNA-1
chr2_1 CDS 28832661 28832810 28832661 ID=Msa0204030-mRNA-1:cds;Parent=Msa0204030-mRNA-1
chr2_1 three_prime_UTR 28832428 28832660 28832428 ID=Msa0204030-mRNA-1:three_prime_utr;Parent=Msa0204030-mRNA-1
Gene Sequence

>Msa0204030

ATGTTAACTTCTTCGCTCTCATTCCTTCATTCTTGCACATTTCCCTCCCCTTCTTCCTCCTCTTCACTGTTCACAGTTCTAACGCCGAATCCCAATTCATCTTCTTCCTCTTTATCTTTCGTGGTTGAAGCCAAAGCCACTACTCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTTGAAGGAACACCCGAAAGACCAAGATTGTCTGTGTTTCGATCCAACAAGCATCTCTTTGTCCAAGTGATTGACGACACCAAGATGCATACACTTGCTTCAGCTTCAACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTTCACCTCTGGTCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAAATCATTGCAAAATCCTGTCTGGAAATAGGGATCACAAAGGTAGCCTTTGACAGAGGTGGTTACCCATACCATGGTCGTGTTAAAGCTATTGCTGATGCGGCACGCGAACATGGCCTCGAGTTCTAA

Protein sequence

>Msa0204030

MLTSSLSFLHSCTFPSPSSSSSLFTVLTPNPNSSSSSLSFVVEAKATTRREDRTARHVRIRKKVEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEIGITKVAFDRGGYPYHGRVKAIADAAREHGLEF*