AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115940 MtrunA17_Chr1g0211891 94.194 310 9 2 14 319 11 315 0.0 557
Msa0115940 MtrunA17_Chr6g0481701 45.361 291 121 5 1 253 1 291 4.33e-65 209
Msa0115940 MtrunA17_Chr3g0112071 37.255 255 116 9 16 244 7 243 3.34e-42 150
Msa0115940 MtrunA17_Chr3g0121201 46.012 163 66 4 143 301 189 333 4.47e-40 144
Msa0115940 MtrunA17_Chr2g0328531 32.143 280 160 10 16 281 14 277 5.98e-37 135
Msa0115940 MtrunA17_Chr4g0031931 32.281 285 148 9 16 281 12 270 6.79e-37 135
Msa0115940 MtrunA17_Chr5g0435561 30.282 284 154 9 17 272 5 272 4.97e-32 123
Msa0115940 MtrunA17_Chr1g0212081 43.671 158 76 5 94 250 172 317 1.39e-31 120
Msa0115940 MtrunA17_Chr3g0114781 30.483 269 129 11 14 243 18 267 1.77e-31 120
Msa0115940 MtrunA17_Chr5g0441191 49.505 101 48 2 142 242 148 245 2.30e-31 120
Msa0115940 MtrunA17_Chr7g0245341 46.154 117 63 0 141 257 289 405 9.04e-31 121
Msa0115940 MtrunA17_Chr1g0171791 43.165 139 70 3 142 280 107 236 1.78e-30 115
Msa0115940 MtrunA17_Chr4g0061811 47.059 119 60 1 133 251 299 414 1.60e-28 114
Msa0115940 MtrunA17_Chr3g0093621 45.098 102 52 2 141 242 138 235 9.81e-27 106
Msa0115940 MtrunA17_Chr6g0461611 39.370 127 69 2 143 267 186 306 1.78e-26 106
Msa0115940 MtrunA17_Chr6g0456041 43.902 123 69 0 127 249 204 326 5.23e-24 100
Msa0115940 MtrunA17_Chr1g0150571 39.623 106 62 1 147 250 181 286 3.76e-22 94.7
Msa0115940 MtrunA17_Chr2g0278071 56.923 65 27 1 177 241 239 302 6.82e-21 92.0
Msa0115940 MtrunA17_Chr5g0417501 38.384 99 55 2 149 247 73 165 1.68e-19 85.5
Msa0115940 MtrunA17_Chr3g0124731 46.575 73 36 1 171 243 166 235 3.24e-18 82.4
Msa0115940 MtrunA17_Chr3g0086801 28.571 119 75 3 129 241 35 149 6.60e-14 68.2
Msa0115940 MtrunA17_Chr2g0308971 43.478 69 39 0 197 265 109 177 7.59e-13 67.0
Msa0115940 MtrunA17_Chr1g0181921 40.000 75 40 1 172 246 189 258 1.22e-12 67.0
Msa0115940 MtrunA17_Chr6g0486651 33.708 89 58 1 158 245 80 168 4.14e-11 63.2
Msa0115940 MtrunA17_Chr3g0089261 38.356 73 36 2 171 243 279 342 4.92e-11 62.8
Msa0115940 MtrunA17_Chr7g0244851 32.110 109 68 2 154 261 64 167 5.35e-11 60.8
Msa0115940 MtrunA17_Chr2g0315711 26.994 163 95 5 93 243 180 330 6.49e-11 62.4
Msa0115940 MtrunA17_Chr2g0316591 42.308 52 30 0 193 244 249 300 7.13e-11 62.4
Msa0115940 MtrunA17_Chr8g0352131 36.620 71 42 1 174 241 170 240 8.45e-11 61.2
Msa0115940 MtrunA17_Chr3g0139031 35.484 62 32 1 197 250 152 213 9.48e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115940 AT3G19950.1 53.333 300 99 9 1 270 1 289 1.70e-94 283
Msa0115940 AT3G19950.2 53.333 300 99 9 1 270 59 347 1.89e-94 285
Msa0115940 AT3G19950.3 53.333 300 99 9 1 270 59 347 1.89e-94 285
Msa0115940 AT1G55530.1 60.656 122 39 3 139 257 170 285 2.28e-44 155
Msa0115940 AT1G55530.2 60.656 122 39 3 139 257 170 285 2.28e-44 155
Msa0115940 AT3G13430.4 37.024 289 132 10 16 259 9 292 2.36e-44 154
Msa0115940 AT3G13430.3 37.024 289 132 10 16 259 9 292 2.36e-44 154
Msa0115940 AT3G13430.1 37.024 289 132 10 16 259 9 292 2.36e-44 154
Msa0115940 AT3G13430.2 37.024 289 132 10 16 259 9 292 2.36e-44 154
Msa0115940 AT1G55530.3 61.017 118 38 2 142 257 141 252 1.01e-43 152
Msa0115940 AT5G56340.1 45.810 179 73 5 128 301 204 363 2.62e-40 145
Msa0115940 AT4G26400.2 51.327 113 49 1 141 253 191 297 4.99e-36 133
Msa0115940 AT4G26400.1 51.327 113 49 1 141 253 191 297 4.99e-36 133
Msa0115940 AT2G40830.1 34.167 240 133 7 17 243 9 236 1.74e-35 131
Msa0115940 AT2G40830.3 34.167 240 133 7 17 243 9 236 1.74e-35 131
Msa0115940 AT2G40830.4 34.167 240 133 7 17 243 9 236 1.74e-35 131
Msa0115940 AT2G40830.2 34.167 240 133 7 17 243 9 236 1.74e-35 131
Msa0115940 AT3G46620.1 30.314 287 160 8 16 281 31 298 2.21e-35 132
Msa0115940 AT3G56580.3 35.146 239 126 7 17 242 9 231 1.27e-33 126
Msa0115940 AT3G56580.1 35.146 239 126 7 17 242 9 231 1.27e-33 126
Msa0115940 AT3G56580.2 35.146 239 126 7 17 242 9 231 1.27e-33 126
Msa0115940 AT5G59550.1 41.290 155 83 4 125 272 122 275 4.18e-33 126
Msa0115940 AT5G59550.2 41.290 155 83 4 125 272 227 380 1.17e-32 127
Msa0115940 AT2G39720.1 31.727 249 146 8 16 245 6 249 7.07e-32 123
Msa0115940 AT2G39720.2 31.727 249 146 8 16 245 6 249 7.07e-32 123
Msa0115940 AT5G01980.1 47.368 114 59 1 141 254 295 407 3.01e-31 122
Msa0115940 AT1G60360.1 30.345 290 150 11 3 255 8 282 3.93e-31 119
Msa0115940 AT5G15820.1 48.039 102 53 0 152 253 246 347 2.34e-28 112
Msa0115940 AT5G08139.1 45.714 105 47 2 152 251 264 363 1.64e-25 105
Msa0115940 AT3G02340.1 40.517 116 68 1 153 267 291 406 4.74e-25 104
Msa0115940 AT3G02340.2 40.517 116 68 1 153 267 291 406 4.74e-25 104
Msa0115940 AT5G20910.1 48.810 84 41 1 169 250 200 283 2.19e-23 98.2
Msa0115940 AT3G10815.1 45.745 94 49 2 151 244 77 168 7.83e-22 91.7
Msa0115940 AT5G64920.1 43.802 121 62 3 138 253 194 313 8.07e-21 91.7
Msa0115940 AT1G26800.1 37.383 107 60 2 150 256 73 172 1.15e-19 85.9
Msa0115940 AT5G60820.1 39.806 103 56 3 145 244 320 419 5.34e-18 84.3
Msa0115940 AT1G68180.1 40.698 86 49 2 157 241 98 182 1.09e-17 81.3
Msa0115940 AT3G60080.1 43.243 74 35 1 177 243 142 215 1.95e-16 79.0
Msa0115940 AT1G14200.1 39.506 81 48 1 162 242 75 154 4.85e-16 75.5
Msa0115940 AT2G44330.1 30.233 129 78 3 121 243 20 142 8.68e-15 72.0
Msa0115940 AT1G18770.1 39.474 76 45 1 167 242 30 104 8.07e-14 67.0
Msa0115940 AT2G29840.1 37.895 95 57 2 152 245 199 292 1.38e-13 70.5
Msa0115940 AT5G02750.1 49.020 51 26 0 196 246 213 263 1.47e-13 70.1
Msa0115940 AT2G03000.1 40.845 71 36 2 171 241 461 525 1.91e-12 68.2
Msa0115940 AT1G18760.1 34.940 83 52 1 163 245 143 223 2.21e-12 65.9
Msa0115940 AT5G52140.1 30.097 103 61 3 141 241 185 278 2.92e-11 63.5
Msa0115940 AT3G30460.1 36.765 68 40 2 178 242 77 144 9.85e-11 59.7

Find 120 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1_3:-34816415 Msa0115940:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1_3:+34816698 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1_3:+34816647 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1_3:-34816414 Msa0115940:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1_3:-34816544 Msa0115940:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1_3:-34815874 Msa0115940:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1_3:-34815894 Msa0115940:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1_3:-34816818 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1_3:-34815887 Msa0115940:CDS
ATATCTCTGCGGTATCCTTT+TGG 0.328546 1_3:-34815924 Msa0115940:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1_3:+34816546 None:intergenic
GGCAATTCATGTCGACAAAC+AGG 0.344933 1_3:+34816104 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1_3:+34816526 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1_3:-34816377 Msa0115940:CDS
GGTGGTGGTAGCAGTGGTGG+TGG 0.356931 1_3:-34815981 Msa0115940:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1_3:-34816398 Msa0115940:CDS
GGTGGTAGCAGTGGTGGTGG+AGG 0.383648 1_3:-34815978 Msa0115940:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1_3:-34816794 Msa0115940:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1_3:-34816704 Msa0115940:CDS
ATGATGATTGCTTGCTTCCA+TGG 0.401701 1_3:-34816148 Msa0115940:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1_3:+34816699 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1_3:+34816648 None:intergenic
GGTGGTGGTGGTAGCAGTGG+TGG 0.420491 1_3:-34815984 Msa0115940:CDS
AGGGATGGTAACGGTGGCGA+TGG 0.423838 1_3:-34816050 Msa0115940:CDS
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1_3:-34816791 Msa0115940:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1_3:+34816317 None:intergenic
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 1_3:+34816658 None:intergenic
GGTAGCAGTGGTGGTGGAGG+AGG 0.436996 1_3:-34815975 Msa0115940:CDS
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1_3:-34816800 Msa0115940:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 1_3:+34816659 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 1_3:+34816586 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1_3:-34816422 Msa0115940:CDS
AACAGTACCGTTGGTGGTGG+TGG 0.448041 1_3:-34816005 Msa0115940:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1_3:-34816797 Msa0115940:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1_3:-34816383 Msa0115940:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1_3:+34816388 None:intergenic
ATGATGCTGATTATGAGAAC+CGG 0.453554 1_3:-34816076 Msa0115940:CDS
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1_3:+34816555 None:intergenic
GTAACGGTGGCGATGGGTTG+AGG 0.457788 1_3:-34816043 Msa0115940:CDS
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1_3:-34816225 Msa0115940:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1_3:+34816532 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 1_3:+34816653 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1_3:+34816641 None:intergenic
TTCAGATGACTCTGGTGAAA+GGG 0.468096 1_3:-34815901 Msa0115940:CDS
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1_3:+34816514 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1_3:-34816209 Msa0115940:CDS
GATGGGTTGAGGTCTGTTGT+TGG 0.484013 1_3:-34816032 Msa0115940:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1_3:+34816598 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1_3:-34816326 Msa0115940:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1_3:+34816568 None:intergenic
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1_3:-34816809 Msa0115940:CDS
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1_3:+34816730 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1_3:+34816707 None:intergenic
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1_3:+34816554 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1_3:+34816573 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1_3:-34816803 Msa0115940:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1_3:-34816303 Msa0115940:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 1_3:+34816520 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1_3:+34816569 None:intergenic
TCATGATAAACATGCTTACA+AGG 0.513615 1_3:+34816167 None:intergenic
GTTCAGATGACTCTGGTGAA+AGG 0.514473 1_3:-34815902 Msa0115940:CDS
CACATTCTTCGAGAAAACCT+TGG 0.516574 1_3:+34816687 None:intergenic
AGTACCGTTGGTGGTGGTGG+TGG 0.516728 1_3:-34816002 Msa0115940:CDS
TGATGATGCGTTGTTGAACT+CGG 0.517659 1_3:-34816252 Msa0115940:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1_3:+34816454 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1_3:+34816508 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1_3:-34816760 Msa0115940:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1_3:+34816462 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1_3:+34816578 None:intergenic
CCAGAGTCATCTGAACCAAA+AGG 0.537380 1_3:+34815909 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1_3:+34816618 None:intergenic
GGGATGGTAACGGTGGCGAT+GGG 0.544115 1_3:-34816049 Msa0115940:CDS
GGGTCGAAACTATCGGAATC+GGG 0.544986 1_3:+34816515 None:intergenic
ATTCTGAAAGTTCTGTGGAC+AGG 0.545677 1_3:+34815945 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1_3:-34816806 Msa0115940:CDS
CTGATTATGAGAACCGGGGT+AGG 0.547933 1_3:-34816070 Msa0115940:CDS
TATGAGAACCGGGGTAGGGA+TGG 0.558385 1_3:-34816065 Msa0115940:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1_3:+34816519 None:intergenic
GGTAACAGTACCGTTGGTGG+TGG 0.569307 1_3:-34816008 Msa0115940:CDS
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1_3:+34816299 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1_3:+34816494 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 1_3:-34816315 Msa0115940:CDS
GAGTTATGCAATTCAAGCCA+TGG 0.582250 1_3:+34816131 None:intergenic
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1_3:+34816389 None:intergenic
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1_3:-34816348 Msa0115940:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 1_3:+34816256 None:intergenic
TGATTATGAGAACCGGGGTA+GGG 0.593107 1_3:-34816069 Msa0115940:CDS
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1_3:+34816296 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1_3:+34816642 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1_3:-34816485 Msa0115940:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1_3:-34816470 Msa0115940:CDS
TCAGATGACTCTGGTGAAAG+GGG 0.602613 1_3:-34815900 Msa0115940:CDS
TCATAATCAGCATCATCAGT+AGG 0.603013 1_3:+34816083 None:intergenic
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1_3:+34816493 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1_3:-34816421 Msa0115940:CDS
CACCGTTACCATCCCTACCC+CGG 0.609569 1_3:+34816057 None:intergenic
TGATGCTGATTATGAGAACC+GGG 0.618591 1_3:-34816075 Msa0115940:CDS
GAGATATTCTGAAAGTTCTG+TGG 0.618924 1_3:+34815940 None:intergenic
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1_3:+34816483 None:intergenic
GTTGGTGGTAACAGTACCGT+TGG 0.622508 1_3:-34816014 Msa0115940:CDS
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1_3:+34816404 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1_3:+34816753 None:intergenic
GCAATTCATGTCGACAAACA+GGG 0.630959 1_3:+34816105 None:intergenic
GGGTTGAGGTCTGTTGTTGG+TGG 0.640822 1_3:-34816029 Msa0115940:CDS
GGTGGTAACAGTACCGTTGG+TGG 0.642968 1_3:-34816011 Msa0115940:CDS
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1_3:-34816282 Msa0115940:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1_3:+34816381 None:intergenic
CGGGGTAGGGATGGTAACGG+TGG 0.648198 1_3:-34816056 Msa0115940:CDS
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1_3:+34816419 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1_3:+34816601 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1_3:-34816201 Msa0115940:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1_3:+34816627 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 1_3:+34816266 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1_3:+34816724 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1_3:-34816815 None:intergenic
AACCGGGGTAGGGATGGTAA+CGG 0.688725 1_3:-34816059 Msa0115940:CDS
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1_3:+34816495 None:intergenic
GAACTTTCAGAATATCTCTG+CGG 0.750243 1_3:-34815935 Msa0115940:CDS
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1_3:+34816366 None:intergenic
GATGCTGATTATGAGAACCG+GGG 0.800968 1_3:-34816074 Msa0115940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG + chr1_3:34816123-34816142 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG + chr1_3:34816511-34816530 None:intergenic 30.0%
AAGCAGAATTAAGGAGTAAT+GGG + chr1_3:34816123-34816142 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG + chr1_3:34816511-34816530 None:intergenic 30.0%
GAAAACCTTGGAAGCAAATT+GGG + chr1_3:34815979-34815998 None:intergenic 35.0%
AGAAAACCTTGGAAGCAAAT+TGG + chr1_3:34815980-34815999 None:intergenic 35.0%
TGGAAATTCGGAATCTGAAT+CGG + chr1_3:34816080-34816099 None:intergenic 35.0%
GAAGCAGAATTAAGGAGTAA+TGG + chr1_3:34816124-34816143 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG - chr1_3:34816190-34816209 Msa0115940:CDS 35.0%
TCATAATCAGCATCATCAGT+AGG + chr1_3:34816595-34816614 None:intergenic 35.0%
! ATGATGCTGATTATGAGAAC+CGG - chr1_3:34816599-34816618 Msa0115940:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG + chr1_3:34816738-34816757 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG - chr1_3:34816740-34816759 Msa0115940:CDS 35.0%
TGGAAATAGGCAAGAAGATT+TGG - chr1_3:34816801-34816820 Msa0115940:CDS 35.0%
GAAAACCTTGGAAGCAAATT+GGG + chr1_3:34815979-34815998 None:intergenic 35.0%
AGAAAACCTTGGAAGCAAAT+TGG + chr1_3:34815980-34815999 None:intergenic 35.0%
TGGAAATTCGGAATCTGAAT+CGG + chr1_3:34816080-34816099 None:intergenic 35.0%
GAAGCAGAATTAAGGAGTAA+TGG + chr1_3:34816124-34816143 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG - chr1_3:34816190-34816209 Msa0115940:CDS 35.0%
TCATAATCAGCATCATCAGT+AGG + chr1_3:34816595-34816614 None:intergenic 35.0%
! ATGATGCTGATTATGAGAAC+CGG - chr1_3:34816599-34816618 Msa0115940:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG + chr1_3:34816738-34816757 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG - chr1_3:34816740-34816759 Msa0115940:CDS 35.0%
TGGAAATAGGCAAGAAGATT+TGG - chr1_3:34816801-34816820 Msa0115940:CDS 35.0%
GAAAGGTTCAGAATCATCGT+CGG + chr1_3:34815954-34815973 None:intergenic 40.0%
CACATTCTTCGAGAAAACCT+TGG + chr1_3:34815991-34816010 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG + chr1_3:34816030-34816049 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG + chr1_3:34816036-34816055 None:intergenic 40.0%
TTGAAGCGGAAAATCACGTT+AGG + chr1_3:34816037-34816056 None:intergenic 40.0%
AAATTCGGAATCTGAATCGG+AGG + chr1_3:34816077-34816096 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG + chr1_3:34816092-34816111 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG + chr1_3:34816132-34816151 None:intergenic 40.0%
TTAATTCTGCTTCCGTTTCC+AGG - chr1_3:34816131-34816150 Msa0115940:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG + chr1_3:34816184-34816203 None:intergenic 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG + chr1_3:34816185-34816204 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG + chr1_3:34816224-34816243 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG - chr1_3:34816254-34816273 Msa0115940:CDS 40.0%
AAGTAATCGCCAAGGTTAGA+GGG + chr1_3:34816289-34816308 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG - chr1_3:34816349-34816368 Msa0115940:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG + chr1_3:34816422-34816441 None:intergenic 40.0%
! TGATGATGCGTTGTTGAACT+CGG - chr1_3:34816423-34816442 Msa0115940:CDS 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG - chr1_3:34816450-34816469 Msa0115940:CDS 40.0%
TGTCAGGATGAGTTTGAGAA+AGG - chr1_3:34816466-34816485 Msa0115940:CDS 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG - chr1_3:34816474-34816493 Msa0115940:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG - chr1_3:34816527-34816546 Msa0115940:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG + chr1_3:34816547-34816566 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG + chr1_3:34816573-34816592 None:intergenic 40.0%
! TGATGCTGATTATGAGAACC+GGG - chr1_3:34816600-34816619 Msa0115940:CDS 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG + chr1_3:34816733-34816752 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG - chr1_3:34816751-34816770 Msa0115940:CDS 40.0%
TTCAGATGACTCTGGTGAAA+GGG - chr1_3:34816774-34816793 Msa0115940:CDS 40.0%
GTGAAAGGGGATTTGGAAAT+AGG - chr1_3:34816788-34816807 Msa0115940:CDS 40.0%
GAAAGGTTCAGAATCATCGT+CGG + chr1_3:34815954-34815973 None:intergenic 40.0%
CACATTCTTCGAGAAAACCT+TGG + chr1_3:34815991-34816010 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG + chr1_3:34816030-34816049 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG + chr1_3:34816036-34816055 None:intergenic 40.0%
TTGAAGCGGAAAATCACGTT+AGG + chr1_3:34816037-34816056 None:intergenic 40.0%
AAATTCGGAATCTGAATCGG+AGG + chr1_3:34816077-34816096 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG + chr1_3:34816092-34816111 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG + chr1_3:34816132-34816151 None:intergenic 40.0%
TTAATTCTGCTTCCGTTTCC+AGG - chr1_3:34816131-34816150 Msa0115940:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG + chr1_3:34816184-34816203 None:intergenic 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG + chr1_3:34816185-34816204 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG + chr1_3:34816224-34816243 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG - chr1_3:34816254-34816273 Msa0115940:CDS 40.0%
AAGTAATCGCCAAGGTTAGA+GGG + chr1_3:34816289-34816308 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG - chr1_3:34816349-34816368 Msa0115940:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG + chr1_3:34816422-34816441 None:intergenic 40.0%
! TGATGATGCGTTGTTGAACT+CGG - chr1_3:34816423-34816442 Msa0115940:CDS 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG - chr1_3:34816450-34816469 Msa0115940:CDS 40.0%
TGTCAGGATGAGTTTGAGAA+AGG - chr1_3:34816466-34816485 Msa0115940:CDS 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG - chr1_3:34816474-34816493 Msa0115940:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG - chr1_3:34816527-34816546 Msa0115940:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG + chr1_3:34816547-34816566 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG + chr1_3:34816573-34816592 None:intergenic 40.0%
! TGATGCTGATTATGAGAACC+GGG - chr1_3:34816600-34816619 Msa0115940:CDS 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG + chr1_3:34816733-34816752 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG - chr1_3:34816751-34816770 Msa0115940:CDS 40.0%
TTCAGATGACTCTGGTGAAA+GGG - chr1_3:34816774-34816793 Msa0115940:CDS 40.0%
GTGAAAGGGGATTTGGAAAT+AGG - chr1_3:34816788-34816807 Msa0115940:CDS 40.0%
TGGAAGCAAATTGGGCAGAA+AGG + chr1_3:34815971-34815990 None:intergenic 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG - chr1_3:34815971-34815990 Msa0115940:CDS 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG + chr1_3:34816019-34816038 None:intergenic 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG + chr1_3:34816020-34816039 None:intergenic 45.0%
ATCACGTTAGGGTTAGGGTT+AGG + chr1_3:34816025-34816044 None:intergenic 45.0%
CGGAAAATCACGTTAGGGTT+AGG + chr1_3:34816031-34816050 None:intergenic 45.0%
!! GATCGTGATGATGGTTGAAG+CGG + chr1_3:34816051-34816070 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG + chr1_3:34816109-34816128 None:intergenic 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG + chr1_3:34816183-34816202 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG - chr1_3:34816253-34816272 Msa0115940:CDS 45.0%
AACCCTGGTTCAGATTCAGA+AGG + chr1_3:34816259-34816278 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG - chr1_3:34816260-34816279 Msa0115940:CDS 45.0%
TGAATCTGAACCAGGGTTTC+GGG - chr1_3:34816261-34816280 Msa0115940:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG + chr1_3:34816290-34816309 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG - chr1_3:34816292-34816311 Msa0115940:CDS 45.0%
! GCAATTGATTCAGCAGCTTG+CGG - chr1_3:34816327-34816346 Msa0115940:CDS 45.0%
GGCTGTTAAGAATCTTCCGA+CGG - chr1_3:34816393-34816412 Msa0115940:CDS 45.0%
GGCAATTCATGTCGACAAAC+AGG + chr1_3:34816574-34816593 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG - chr1_3:34816601-34816620 Msa0115940:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG - chr1_3:34816606-34816625 Msa0115940:CDS 45.0%
CCAGAGTCATCTGAACCAAA+AGG + chr1_3:34816769-34816788 None:intergenic 45.0%
!!! CCTTTTGGTTCAGATGACTC+TGG - chr1_3:34816766-34816785 Msa0115940:CDS 45.0%
GTTCAGATGACTCTGGTGAA+AGG - chr1_3:34816773-34816792 Msa0115940:CDS 45.0%
TCAGATGACTCTGGTGAAAG+GGG - chr1_3:34816775-34816794 Msa0115940:CDS 45.0%
TGGAAGCAAATTGGGCAGAA+AGG + chr1_3:34815971-34815990 None:intergenic 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG - chr1_3:34815971-34815990 Msa0115940:CDS 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG + chr1_3:34816019-34816038 None:intergenic 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG + chr1_3:34816020-34816039 None:intergenic 45.0%
ATCACGTTAGGGTTAGGGTT+AGG + chr1_3:34816025-34816044 None:intergenic 45.0%
CGGAAAATCACGTTAGGGTT+AGG + chr1_3:34816031-34816050 None:intergenic 45.0%
!! GATCGTGATGATGGTTGAAG+CGG + chr1_3:34816051-34816070 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG + chr1_3:34816109-34816128 None:intergenic 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG + chr1_3:34816183-34816202 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG - chr1_3:34816253-34816272 Msa0115940:CDS 45.0%
AACCCTGGTTCAGATTCAGA+AGG + chr1_3:34816259-34816278 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG - chr1_3:34816260-34816279 Msa0115940:CDS 45.0%
TGAATCTGAACCAGGGTTTC+GGG - chr1_3:34816261-34816280 Msa0115940:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG + chr1_3:34816290-34816309 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG - chr1_3:34816292-34816311 Msa0115940:CDS 45.0%
! GCAATTGATTCAGCAGCTTG+CGG - chr1_3:34816327-34816346 Msa0115940:CDS 45.0%
GGCTGTTAAGAATCTTCCGA+CGG - chr1_3:34816393-34816412 Msa0115940:CDS 45.0%
GGCAATTCATGTCGACAAAC+AGG + chr1_3:34816574-34816593 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG - chr1_3:34816601-34816620 Msa0115940:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG - chr1_3:34816606-34816625 Msa0115940:CDS 45.0%
CCAGAGTCATCTGAACCAAA+AGG + chr1_3:34816769-34816788 None:intergenic 45.0%
!!! CCTTTTGGTTCAGATGACTC+TGG - chr1_3:34816766-34816785 Msa0115940:CDS 45.0%
GTTCAGATGACTCTGGTGAA+AGG - chr1_3:34816773-34816792 Msa0115940:CDS 45.0%
TCAGATGACTCTGGTGAAAG+GGG - chr1_3:34816775-34816794 Msa0115940:CDS 45.0%
TTCAGAATCATCGTCGGTGC+AGG + chr1_3:34815948-34815967 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG + chr1_3:34816060-34816079 None:intergenic 50.0%
AGAAGAGCGAAGGGATGGAA+TGG + chr1_3:34816100-34816119 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG + chr1_3:34816110-34816129 None:intergenic 50.0%
GAAACTATCGGAATCGGGTC+GGG + chr1_3:34816158-34816177 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG + chr1_3:34816159-34816178 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG + chr1_3:34816163-34816182 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG + chr1_3:34816164-34816183 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG + chr1_3:34816170-34816189 None:intergenic 50.0%
GGCCGTTGAGATGATTCTGA+AGG + chr1_3:34816195-34816214 None:intergenic 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG - chr1_3:34816277-34816296 Msa0115940:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG + chr1_3:34816382-34816401 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG - chr1_3:34816605-34816624 Msa0115940:CDS 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG - chr1_3:34816643-34816662 Msa0115940:CDS 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG - chr1_3:34816661-34816680 Msa0115940:CDS 50.0%
GACTCTGGTGAAAGGGGATT+TGG - chr1_3:34816781-34816800 Msa0115940:CDS 50.0%
TTCAGAATCATCGTCGGTGC+AGG + chr1_3:34815948-34815967 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG + chr1_3:34816060-34816079 None:intergenic 50.0%
AGAAGAGCGAAGGGATGGAA+TGG + chr1_3:34816100-34816119 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG + chr1_3:34816110-34816129 None:intergenic 50.0%
GAAACTATCGGAATCGGGTC+GGG + chr1_3:34816158-34816177 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG + chr1_3:34816159-34816178 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG + chr1_3:34816163-34816182 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG + chr1_3:34816164-34816183 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG + chr1_3:34816170-34816189 None:intergenic 50.0%
GGCCGTTGAGATGATTCTGA+AGG + chr1_3:34816195-34816214 None:intergenic 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG - chr1_3:34816277-34816296 Msa0115940:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG + chr1_3:34816382-34816401 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG - chr1_3:34816605-34816624 Msa0115940:CDS 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG - chr1_3:34816643-34816662 Msa0115940:CDS 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG - chr1_3:34816661-34816680 Msa0115940:CDS 50.0%
GACTCTGGTGAAAGGGGATT+TGG - chr1_3:34816781-34816800 Msa0115940:CDS 50.0%
TCTTCTGCCACGTGTGCAGT+CGG - chr1_3:34815915-34815934 Msa0115940:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG + chr1_3:34815925-34815944 None:intergenic 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG + chr1_3:34816105-34816124 None:intergenic 55.0%
TTAGAGGGAACCCGAAACCC+TGG + chr1_3:34816274-34816293 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG + chr1_3:34816297-34816316 None:intergenic 55.0%
GCATCATCAACGGTCACCGT+CGG + chr1_3:34816412-34816431 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG - chr1_3:34816610-34816629 Msa0115940:CDS 55.0%
AACCGGGGTAGGGATGGTAA+CGG - chr1_3:34816616-34816635 Msa0115940:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG - chr1_3:34816646-34816665 Msa0115940:CDS 55.0%
GGTGGTAACAGTACCGTTGG+TGG - chr1_3:34816664-34816683 Msa0115940:CDS 55.0%
! GGTAACAGTACCGTTGGTGG+TGG - chr1_3:34816667-34816686 Msa0115940:CDS 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG - chr1_3:34816670-34816689 Msa0115940:CDS 55.0%
TCTTCTGCCACGTGTGCAGT+CGG - chr1_3:34815915-34815934 Msa0115940:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG + chr1_3:34815925-34815944 None:intergenic 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG + chr1_3:34816105-34816124 None:intergenic 55.0%
TTAGAGGGAACCCGAAACCC+TGG + chr1_3:34816274-34816293 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG + chr1_3:34816297-34816316 None:intergenic 55.0%
GCATCATCAACGGTCACCGT+CGG + chr1_3:34816412-34816431 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG - chr1_3:34816610-34816629 Msa0115940:CDS 55.0%
AACCGGGGTAGGGATGGTAA+CGG - chr1_3:34816616-34816635 Msa0115940:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG - chr1_3:34816646-34816665 Msa0115940:CDS 55.0%
GGTGGTAACAGTACCGTTGG+TGG - chr1_3:34816664-34816683 Msa0115940:CDS 55.0%
! GGTAACAGTACCGTTGGTGG+TGG - chr1_3:34816667-34816686 Msa0115940:CDS 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG - chr1_3:34816670-34816689 Msa0115940:CDS 55.0%
ATGTCTTCTGGCGGCGATGG+CGG - chr1_3:34815869-34815888 Msa0115940:CDS 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG + chr1_3:34816146-34816165 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG + chr1_3:34816216-34816235 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG - chr1_3:34816298-34816317 Msa0115940:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG + chr1_3:34816312-34816331 None:intergenic 60.0%
GGCGGTGTGCCGTAACGATT+CGG + chr1_3:34816361-34816380 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG - chr1_3:34816360-34816379 Msa0115940:CDS 60.0%
CACCGTTACCATCCCTACCC+CGG + chr1_3:34816621-34816640 None:intergenic 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG - chr1_3:34816625-34816644 Msa0115940:CDS 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG - chr1_3:34816626-34816645 Msa0115940:CDS 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG - chr1_3:34816632-34816651 Msa0115940:CDS 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG - chr1_3:34816673-34816692 Msa0115940:CDS 60.0%
ACCACCACCACCACCACCAA+CGG + chr1_3:34816680-34816699 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG - chr1_3:34815869-34815888 Msa0115940:CDS 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG + chr1_3:34816146-34816165 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG + chr1_3:34816216-34816235 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG - chr1_3:34816298-34816317 Msa0115940:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG + chr1_3:34816312-34816331 None:intergenic 60.0%
GGCGGTGTGCCGTAACGATT+CGG + chr1_3:34816361-34816380 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG - chr1_3:34816360-34816379 Msa0115940:CDS 60.0%
CACCGTTACCATCCCTACCC+CGG + chr1_3:34816621-34816640 None:intergenic 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG - chr1_3:34816625-34816644 Msa0115940:CDS 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG - chr1_3:34816626-34816645 Msa0115940:CDS 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG - chr1_3:34816632-34816651 Msa0115940:CDS 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG - chr1_3:34816673-34816692 Msa0115940:CDS 60.0%
ACCACCACCACCACCACCAA+CGG + chr1_3:34816680-34816699 None:intergenic 60.0%
ATCGGAATCGGGTCGGGTCC+TGG + chr1_3:34816152-34816171 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG - chr1_3:34816205-34816224 Msa0115940:CDS 65.0%
ACAGCCTCTTTCGACGCCGG+CGG + chr1_3:34816379-34816398 None:intergenic 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG - chr1_3:34816619-34816638 Msa0115940:CDS 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG - chr1_3:34816676-34816695 Msa0115940:CDS 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG - chr1_3:34816679-34816698 Msa0115940:CDS 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG - chr1_3:34816688-34816707 Msa0115940:CDS 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG - chr1_3:34816691-34816710 Msa0115940:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG - chr1_3:34816694-34816713 Msa0115940:CDS 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG - chr1_3:34816697-34816716 Msa0115940:CDS 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG - chr1_3:34816700-34816719 Msa0115940:CDS 65.0%
ATCGGAATCGGGTCGGGTCC+TGG + chr1_3:34816152-34816171 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG - chr1_3:34816205-34816224 Msa0115940:CDS 65.0%
ACAGCCTCTTTCGACGCCGG+CGG + chr1_3:34816379-34816398 None:intergenic 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG - chr1_3:34816619-34816638 Msa0115940:CDS 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG - chr1_3:34816676-34816695 Msa0115940:CDS 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG - chr1_3:34816679-34816698 Msa0115940:CDS 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG - chr1_3:34816688-34816707 Msa0115940:CDS 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG - chr1_3:34816691-34816710 Msa0115940:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG - chr1_3:34816694-34816713 Msa0115940:CDS 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG - chr1_3:34816697-34816716 Msa0115940:CDS 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG - chr1_3:34816700-34816719 Msa0115940:CDS 65.0%
! TCTTCTGGCGGCGATGGCGG+TGG - chr1_3:34815872-34815891 Msa0115940:CDS 70.0%
! CACACCGCCGGCGTCGAAAG+AGG - chr1_3:34816372-34816391 Msa0115940:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG - chr1_3:34815872-34815891 Msa0115940:CDS 70.0%
! CACACCGCCGGCGTCGAAAG+AGG - chr1_3:34816372-34816391 Msa0115940:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG - chr1_3:34815875-34815894 Msa0115940:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG - chr1_3:34815884-34815903 Msa0115940:CDS 75.0%
! TCTGGCGGCGATGGCGGTGG+TGG - chr1_3:34815875-34815894 Msa0115940:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG - chr1_3:34815884-34815903 Msa0115940:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG - chr1_3:34815878-34815897 Msa0115940:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG - chr1_3:34815881-34815900 Msa0115940:CDS 80.0%
!! GGCGGCGATGGCGGTGGTGG+CGG - chr1_3:34815878-34815897 Msa0115940:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG - chr1_3:34815881-34815900 Msa0115940:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34815869 34816828 34815869 ID=Msa0115940;Name=Msa0115940
chr1_3 mRNA 34815869 34816828 34815869 ID=Msa0115940-mRNA-1;Parent=Msa0115940;Name=Msa0115940-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|319
chr1_3 exon 34815869 34816828 34815869 ID=Msa0115940-mRNA-1:exon:11130;Parent=Msa0115940-mRNA-1
chr1_3 CDS 34815869 34816828 34815869 ID=Msa0115940-mRNA-1:cds;Parent=Msa0115940-mRNA-1
Gene Sequence

>Msa0115940

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA
Protein sequence

>Msa0115940

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDGNGGDGLRSVVGGNSTVGGGGGGGSSGGGGGNRPVHRTFRISLRYPFGSDDSGERGFGNRQEDLD*