Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1366390 | XP_003592721.1 | 95.484 | 310 | 9 | 1 | 14 | 323 | 11 | 315 | 0.0 | 570 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1366390 | sp|P0CH30|RING1_GOSHI | 50.964 | 363 | 113 | 13 | 1 | 323 | 1 | 338 | 1.80e-99 | 299 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1366390 | G7IE87 | 95.484 | 310 | 9 | 1 | 14 | 323 | 11 | 315 | 0.0 | 570 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0033840 | Msa1366390 | -0.822867 | 1.882021e-53 | -8.615850e-47 |
Msa0044720 | Msa1366390 | 0.933612 | 1.439993e-95 | -8.615850e-47 |
Msa0090510 | Msa1366390 | 0.813704 | 2.237325e-51 | -8.615850e-47 |
Msa0115940 | Msa1366390 | 0.975897 | 8.403007e-141 | -8.615850e-47 |
Msa1366390 | Msa1385720 | 0.809704 | 1.659234e-50 | -8.615850e-47 |
Msa1366390 | Msa1391480 | 0.800448 | 1.434554e-48 | -8.615850e-47 |
Msa1366390 | Msa1406070 | 0.807947 | 3.941222e-50 | -8.615850e-47 |
Msa1366390 | Msa1434090 | 0.815658 | 8.257230e-52 | -8.615850e-47 |
Msa1366390 | Msa1458090 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
Msa0639110 | Msa1366390 | 0.815032 | 1.137678e-51 | -8.615850e-47 |
Msa0672550 | Msa1366390 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
Msa0689440 | Msa1366390 | 0.800885 | 1.168349e-48 | -8.615850e-47 |
Msa0697680 | Msa1366390 | 0.842589 | 2.357545e-58 | -8.615850e-47 |
Msa0709120 | Msa1366390 | 0.806177 | 9.335734e-50 | -8.615850e-47 |
Msa0139670 | Msa1366390 | 0.804545 | 2.052118e-49 | -8.615850e-47 |
Msa0142410 | Msa1366390 | 0.802585 | 5.231596e-49 | -8.615850e-47 |
Msa0149440 | Msa1366390 | 0.800515 | 1.390323e-48 | -8.615850e-47 |
Msa0183910 | Msa1366390 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
Msa0202410 | Msa1366390 | 0.800439 | 1.440499e-48 | -8.615850e-47 |
Msa1309760 | Msa1366390 | 0.831994 | 1.217025e-55 | -8.615850e-47 |
Msa1337850 | Msa1366390 | 0.800584 | 1.346050e-48 | -8.615850e-47 |
Msa0382370 | Msa1366390 | 0.810128 | 1.344482e-50 | -8.615850e-47 |
Msa1083970 | Msa1366390 | 0.826763 | 2.269341e-54 | -8.615850e-47 |
Msa1123770 | Msa1366390 | 0.806418 | 8.307352e-50 | -8.615850e-47 |
Msa1128270 | Msa1366390 | 0.836715 | 7.953569e-57 | -8.615850e-47 |
Msa1169910 | Msa1366390 | 0.810779 | 9.726599e-51 | -8.615850e-47 |
Msa1183140 | Msa1366390 | 0.818152 | 2.275116e-52 | -8.615850e-47 |
Msa1188350 | Msa1366390 | 0.827464 | 1.541738e-54 | -8.615850e-47 |
Msa1221630 | Msa1366390 | 0.811321 | 7.423473e-51 | -8.615850e-47 |
Msa0560460 | Msa1366390 | 0.814396 | 1.573638e-51 | -8.615850e-47 |
Msa0592330 | Msa1366390 | 0.815956 | 7.088354e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1366390 | MtrunA17_Chr1g0211891 | 95.484 | 310 | 9 | 1 | 14 | 323 | 11 | 315 | 0.0 | 570 |
Msa1366390 | MtrunA17_Chr6g0481701 | 45.361 | 291 | 121 | 5 | 1 | 253 | 1 | 291 | 3.64e-65 | 209 |
Msa1366390 | MtrunA17_Chr3g0112071 | 37.255 | 255 | 116 | 9 | 16 | 244 | 7 | 243 | 3.28e-42 | 150 |
Msa1366390 | MtrunA17_Chr3g0121201 | 46.012 | 163 | 66 | 4 | 143 | 301 | 189 | 333 | 4.57e-40 | 144 |
Msa1366390 | MtrunA17_Chr4g0031931 | 32.281 | 285 | 148 | 9 | 16 | 281 | 12 | 270 | 6.22e-37 | 135 |
Msa1366390 | MtrunA17_Chr2g0328531 | 32.143 | 280 | 160 | 10 | 16 | 281 | 14 | 277 | 6.75e-37 | 135 |
Msa1366390 | MtrunA17_Chr5g0435561 | 30.282 | 284 | 154 | 9 | 17 | 272 | 5 | 272 | 4.44e-32 | 123 |
Msa1366390 | MtrunA17_Chr1g0212081 | 43.671 | 158 | 76 | 5 | 94 | 250 | 172 | 317 | 1.38e-31 | 120 |
Msa1366390 | MtrunA17_Chr3g0114781 | 30.483 | 269 | 129 | 11 | 14 | 243 | 18 | 267 | 1.78e-31 | 120 |
Msa1366390 | MtrunA17_Chr5g0441191 | 49.505 | 101 | 48 | 2 | 142 | 242 | 148 | 245 | 2.32e-31 | 120 |
Msa1366390 | MtrunA17_Chr7g0245341 | 46.154 | 117 | 63 | 0 | 141 | 257 | 289 | 405 | 7.23e-31 | 121 |
Msa1366390 | MtrunA17_Chr1g0171791 | 43.165 | 139 | 70 | 3 | 142 | 280 | 107 | 236 | 2.05e-30 | 115 |
Msa1366390 | MtrunA17_Chr4g0061811 | 47.059 | 119 | 60 | 1 | 133 | 251 | 299 | 414 | 1.61e-28 | 114 |
Msa1366390 | MtrunA17_Chr3g0093621 | 45.098 | 102 | 52 | 2 | 141 | 242 | 138 | 235 | 9.58e-27 | 106 |
Msa1366390 | MtrunA17_Chr6g0461611 | 39.370 | 127 | 69 | 2 | 143 | 267 | 186 | 306 | 1.97e-26 | 106 |
Msa1366390 | MtrunA17_Chr6g0456041 | 43.902 | 123 | 69 | 0 | 127 | 249 | 204 | 326 | 4.56e-24 | 100 |
Msa1366390 | MtrunA17_Chr1g0150571 | 39.623 | 106 | 62 | 1 | 147 | 250 | 181 | 286 | 3.46e-22 | 94.7 |
Msa1366390 | MtrunA17_Chr2g0278071 | 56.923 | 65 | 27 | 1 | 177 | 241 | 239 | 302 | 6.61e-21 | 92.0 |
Msa1366390 | MtrunA17_Chr5g0417501 | 38.384 | 99 | 55 | 2 | 149 | 247 | 73 | 165 | 1.58e-19 | 85.9 |
Msa1366390 | MtrunA17_Chr3g0124731 | 46.575 | 73 | 36 | 1 | 171 | 243 | 166 | 235 | 3.19e-18 | 82.4 |
Msa1366390 | MtrunA17_Chr3g0086801 | 28.571 | 119 | 75 | 3 | 129 | 241 | 35 | 149 | 6.38e-14 | 68.6 |
Msa1366390 | MtrunA17_Chr2g0308971 | 43.478 | 69 | 39 | 0 | 197 | 265 | 109 | 177 | 6.93e-13 | 67.0 |
Msa1366390 | MtrunA17_Chr1g0181921 | 40.000 | 75 | 40 | 1 | 172 | 246 | 189 | 258 | 1.23e-12 | 67.0 |
Msa1366390 | MtrunA17_Chr6g0486651 | 33.708 | 89 | 58 | 1 | 158 | 245 | 80 | 168 | 3.78e-11 | 63.5 |
Msa1366390 | MtrunA17_Chr3g0089261 | 38.356 | 73 | 36 | 2 | 171 | 243 | 279 | 342 | 4.78e-11 | 63.2 |
Msa1366390 | MtrunA17_Chr7g0244851 | 32.110 | 109 | 68 | 2 | 154 | 261 | 64 | 167 | 4.90e-11 | 60.8 |
Msa1366390 | MtrunA17_Chr2g0315711 | 26.994 | 163 | 95 | 5 | 93 | 243 | 180 | 330 | 6.78e-11 | 62.4 |
Msa1366390 | MtrunA17_Chr2g0316591 | 42.308 | 52 | 30 | 0 | 193 | 244 | 249 | 300 | 7.31e-11 | 62.4 |
Msa1366390 | MtrunA17_Chr8g0352131 | 36.620 | 71 | 42 | 1 | 174 | 241 | 170 | 240 | 8.31e-11 | 61.2 |
Msa1366390 | MtrunA17_Chr3g0139031 | 35.484 | 62 | 32 | 1 | 197 | 250 | 152 | 213 | 9.11e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1366390 | AT3G19950.1 | 53.333 | 300 | 99 | 9 | 1 | 270 | 1 | 289 | 1.39e-94 | 284 |
Msa1366390 | AT3G19950.2 | 53.333 | 300 | 99 | 9 | 1 | 270 | 59 | 347 | 1.81e-94 | 285 |
Msa1366390 | AT3G19950.3 | 53.333 | 300 | 99 | 9 | 1 | 270 | 59 | 347 | 1.81e-94 | 285 |
Msa1366390 | AT1G55530.1 | 60.656 | 122 | 39 | 3 | 139 | 257 | 170 | 285 | 2.04e-44 | 155 |
Msa1366390 | AT1G55530.2 | 60.656 | 122 | 39 | 3 | 139 | 257 | 170 | 285 | 2.04e-44 | 155 |
Msa1366390 | AT3G13430.4 | 37.024 | 289 | 132 | 10 | 16 | 259 | 9 | 292 | 2.84e-44 | 154 |
Msa1366390 | AT3G13430.3 | 37.024 | 289 | 132 | 10 | 16 | 259 | 9 | 292 | 2.84e-44 | 154 |
Msa1366390 | AT3G13430.1 | 37.024 | 289 | 132 | 10 | 16 | 259 | 9 | 292 | 2.84e-44 | 154 |
Msa1366390 | AT3G13430.2 | 37.024 | 289 | 132 | 10 | 16 | 259 | 9 | 292 | 2.84e-44 | 154 |
Msa1366390 | AT1G55530.3 | 61.017 | 118 | 38 | 2 | 142 | 257 | 141 | 252 | 8.44e-44 | 153 |
Msa1366390 | AT5G56340.1 | 45.810 | 179 | 73 | 5 | 128 | 301 | 204 | 363 | 2.82e-40 | 145 |
Msa1366390 | AT4G26400.2 | 51.327 | 113 | 49 | 1 | 141 | 253 | 191 | 297 | 5.07e-36 | 133 |
Msa1366390 | AT4G26400.1 | 51.327 | 113 | 49 | 1 | 141 | 253 | 191 | 297 | 5.07e-36 | 133 |
Msa1366390 | AT3G46620.1 | 30.314 | 287 | 160 | 8 | 16 | 281 | 31 | 298 | 2.07e-35 | 132 |
Msa1366390 | AT2G40830.1 | 34.167 | 240 | 133 | 7 | 17 | 243 | 9 | 236 | 2.41e-35 | 131 |
Msa1366390 | AT2G40830.3 | 34.167 | 240 | 133 | 7 | 17 | 243 | 9 | 236 | 2.41e-35 | 131 |
Msa1366390 | AT2G40830.4 | 34.167 | 240 | 133 | 7 | 17 | 243 | 9 | 236 | 2.41e-35 | 131 |
Msa1366390 | AT2G40830.2 | 34.167 | 240 | 133 | 7 | 17 | 243 | 9 | 236 | 2.41e-35 | 131 |
Msa1366390 | AT3G56580.3 | 35.146 | 239 | 126 | 7 | 17 | 242 | 9 | 231 | 1.34e-33 | 126 |
Msa1366390 | AT3G56580.1 | 35.146 | 239 | 126 | 7 | 17 | 242 | 9 | 231 | 1.34e-33 | 126 |
Msa1366390 | AT3G56580.2 | 35.146 | 239 | 126 | 7 | 17 | 242 | 9 | 231 | 1.34e-33 | 126 |
Msa1366390 | AT5G59550.1 | 41.290 | 155 | 83 | 4 | 125 | 272 | 122 | 275 | 3.67e-33 | 127 |
Msa1366390 | AT5G59550.2 | 41.290 | 155 | 83 | 4 | 125 | 272 | 227 | 380 | 1.26e-32 | 127 |
Msa1366390 | AT2G39720.1 | 31.727 | 249 | 146 | 8 | 16 | 245 | 6 | 249 | 7.75e-32 | 123 |
Msa1366390 | AT2G39720.2 | 31.727 | 249 | 146 | 8 | 16 | 245 | 6 | 249 | 7.75e-32 | 123 |
Msa1366390 | AT5G01980.1 | 47.368 | 114 | 59 | 1 | 141 | 254 | 295 | 407 | 2.79e-31 | 123 |
Msa1366390 | AT1G60360.1 | 30.556 | 288 | 148 | 11 | 3 | 253 | 8 | 280 | 4.13e-31 | 119 |
Msa1366390 | AT5G15820.1 | 48.039 | 102 | 53 | 0 | 152 | 253 | 246 | 347 | 2.10e-28 | 112 |
Msa1366390 | AT5G08139.1 | 45.714 | 105 | 47 | 2 | 152 | 251 | 264 | 363 | 1.63e-25 | 105 |
Msa1366390 | AT3G02340.1 | 40.517 | 116 | 68 | 1 | 153 | 267 | 291 | 406 | 3.85e-25 | 104 |
Msa1366390 | AT3G02340.2 | 40.517 | 116 | 68 | 1 | 153 | 267 | 291 | 406 | 3.85e-25 | 104 |
Msa1366390 | AT5G20910.1 | 48.810 | 84 | 41 | 1 | 169 | 250 | 200 | 283 | 1.94e-23 | 98.6 |
Msa1366390 | AT3G10815.1 | 45.745 | 94 | 49 | 2 | 151 | 244 | 77 | 168 | 8.09e-22 | 91.7 |
Msa1366390 | AT5G64920.1 | 43.802 | 121 | 62 | 3 | 138 | 253 | 194 | 313 | 7.73e-21 | 91.7 |
Msa1366390 | AT1G26800.1 | 37.383 | 107 | 60 | 2 | 150 | 256 | 73 | 172 | 1.01e-19 | 86.3 |
Msa1366390 | AT5G60820.1 | 39.806 | 103 | 56 | 3 | 145 | 244 | 320 | 419 | 5.35e-18 | 84.7 |
Msa1366390 | AT1G68180.1 | 44.595 | 74 | 40 | 1 | 168 | 241 | 110 | 182 | 1.12e-17 | 81.3 |
Msa1366390 | AT3G60080.1 | 43.243 | 74 | 35 | 1 | 177 | 243 | 142 | 215 | 1.72e-16 | 79.0 |
Msa1366390 | AT1G14200.1 | 39.506 | 81 | 48 | 1 | 162 | 242 | 75 | 154 | 4.77e-16 | 75.5 |
Msa1366390 | AT2G44330.1 | 30.233 | 129 | 78 | 3 | 121 | 243 | 20 | 142 | 7.78e-15 | 72.0 |
Msa1366390 | AT1G18770.1 | 39.474 | 76 | 45 | 1 | 167 | 242 | 30 | 104 | 7.46e-14 | 67.4 |
Msa1366390 | AT2G29840.1 | 37.895 | 95 | 57 | 2 | 152 | 245 | 199 | 292 | 1.31e-13 | 70.5 |
Msa1366390 | AT5G02750.1 | 49.020 | 51 | 26 | 0 | 196 | 246 | 213 | 263 | 1.45e-13 | 70.5 |
Msa1366390 | AT2G03000.1 | 40.845 | 71 | 36 | 2 | 171 | 241 | 461 | 525 | 1.78e-12 | 68.6 |
Msa1366390 | AT1G18760.1 | 34.940 | 83 | 52 | 1 | 163 | 245 | 143 | 223 | 2.40e-12 | 65.9 |
Msa1366390 | AT5G52140.1 | 30.097 | 103 | 61 | 3 | 141 | 241 | 185 | 278 | 2.64e-11 | 63.5 |
Find 122 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAATCTGAACCAGGGTTT+CGG | 0.222566 | tig0018457:-7337 | Msa1366390:CDS |
AGAAAACCTTGGAAGCAAAT+TGG | 0.253434 | tig0018457:+7620 | None:intergenic |
CGGAAAATCACGTTAGGGTT+AGG | 0.253624 | tig0018457:+7569 | None:intergenic |
TGAATCTGAACCAGGGTTTC+GGG | 0.260029 | tig0018457:-7336 | Msa1366390:CDS |
TTAATTCTGCTTCCGTTTCC+AGG | 0.291944 | tig0018457:-7466 | Msa1366390:CDS |
TGGAAATAGGCAAGAAGATT+TGG | 0.294855 | tig0018457:-6784 | Msa1366390:CDS |
GACTCTGGTGAAAGGGGATT+TGG | 0.316145 | tig0018457:-6804 | Msa1366390:CDS |
GAGTTACGAGTCATGTCTTC+TGG | 0.323312 | tig0018457:-7740 | None:intergenic |
GTGAAAGGGGATTTGGAAAT+AGG | 0.323534 | tig0018457:-6797 | Msa1366390:CDS |
ATATCTCTGCGGTATCCTTT+TGG | 0.328546 | tig0018457:-6846 | Msa1366390:CDS |
TGGAAACGGAAGCAGAATTA+AGG | 0.337608 | tig0018457:+7468 | None:intergenic |
GGCAATTCATGTCGACAAAC+AGG | 0.344933 | tig0018457:+7026 | None:intergenic |
ATCGGAATCGGGTCGGGTCC+TGG | 0.349609 | tig0018457:+7448 | None:intergenic |
GGCGATTACTTCCTCGGTGC+TGG | 0.350083 | tig0018457:-7299 | Msa1366390:CDS |
GGTGGTGGTAGCAGTGGTGG+TGG | 0.356931 | tig0018457:-6903 | Msa1366390:CDS |
TTTCGGGTTCCCTCTAACCT+TGG | 0.381086 | tig0018457:-7320 | Msa1366390:CDS |
GGTGGTAGCAGTGGTGGTGG+AGG | 0.383648 | tig0018457:-6900 | Msa1366390:CDS |
GGCGATGGCGGTGGTGGCGG+TGG | 0.385441 | tig0018457:-7716 | Msa1366390:CDS |
TTCTGCCCAATTTGCTTCCA+AGG | 0.391229 | tig0018457:-7626 | Msa1366390:CDS |
TGCTCAGGACTCTGGTGAAA+GGG | 0.401420 | tig0018457:-6811 | Msa1366390:CDS |
ATGATGATTGCTTGCTTCCA+TGG | 0.401701 | tig0018457:-7070 | Msa1366390:CDS |
GAAAACCTTGGAAGCAAATT+GGG | 0.402814 | tig0018457:+7621 | None:intergenic |
GGAAAATCACGTTAGGGTTA+GGG | 0.416687 | tig0018457:+7570 | None:intergenic |
GGTGGTGGTGGTAGCAGTGG+TGG | 0.420491 | tig0018457:-6906 | Msa1366390:CDS |
AGGGATGGTAACGGTGGCGA+TGG | 0.423838 | tig0018457:-6972 | Msa1366390:CDS |
GATGGCGGTGGTGGCGGTGG+AGG | 0.427865 | tig0018457:-7713 | Msa1366390:CDS |
GGCGGTGTGCCGTAACGATT+CGG | 0.428230 | tig0018457:+7239 | None:intergenic |
TGGTTCAGATGACTCTGCTC+AGG | 0.429490 | tig0018457:-6826 | Msa1366390:CDS |
GTTAGGGTTAGGGTTAGGTT+CGG | 0.433893 | tig0018457:+7580 | None:intergenic |
GGTAGCAGTGGTGGTGGAGG+AGG | 0.436996 | tig0018457:-6897 | Msa1366390:CDS |
TCTGGCGGCGATGGCGGTGG+TGG | 0.437691 | tig0018457:-7722 | Msa1366390:CDS |
TTAGGGTTAGGGTTAGGTTC+GGG | 0.443732 | tig0018457:+7581 | None:intergenic |
GAAGGGATGGAATGGAAATT+CGG | 0.445340 | tig0018457:+7508 | None:intergenic |
CATCCTTCTGAATCTGAACC+AGG | 0.445750 | tig0018457:-7344 | Msa1366390:CDS |
AACAGTACCGTTGGTGGTGG+TGG | 0.448041 | tig0018457:-6927 | Msa1366390:CDS |
GGCGGCGATGGCGGTGGTGG+CGG | 0.448894 | tig0018457:-7719 | Msa1366390:CDS |
AACCTTGGCGATTACTTCCT+CGG | 0.449887 | tig0018457:-7305 | Msa1366390:CDS |
GAAGTAATCGCCAAGGTTAG+AGG | 0.450993 | tig0018457:+7310 | None:intergenic |
ATGATGCTGATTATGAGAAC+CGG | 0.453554 | tig0018457:-6998 | Msa1366390:CDS |
AAGCAGAATTAAGGAGTAAT+GGG | 0.453884 | tig0018457:+7477 | None:intergenic |
GTAACGGTGGCGATGGGTTG+AGG | 0.457788 | tig0018457:-6965 | Msa1366390:CDS |
GAATCAATGTGCTGTTTGTC+AGG | 0.459494 | tig0018457:-7147 | Msa1366390:CDS |
ATCGGGTCGGGTCCTGGAAA+CGG | 0.461334 | tig0018457:+7454 | None:intergenic |
ATCACGTTAGGGTTAGGGTT+AGG | 0.462218 | tig0018457:+7575 | None:intergenic |
TTGAAGCGGAAAATCACGTT+AGG | 0.465974 | tig0018457:+7563 | None:intergenic |
GGGGTCGAAACTATCGGAAT+CGG | 0.469880 | tig0018457:+7436 | None:intergenic |
TGTCAGGATGAGTTTGAGAA+AGG | 0.474239 | tig0018457:-7131 | Msa1366390:CDS |
GATGGGTTGAGGTCTGTTGT+TGG | 0.484013 | tig0018457:-6954 | Msa1366390:CDS |
TGGAAATTCGGAATCTGAAT+CGG | 0.491233 | tig0018457:+7520 | None:intergenic |
GAGAATGATCCGAATCGTTA+CGG | 0.491542 | tig0018457:-7248 | Msa1366390:CDS |
GAGTAATGGGAGAAGAGCGA+AGG | 0.493838 | tig0018457:+7490 | None:intergenic |
GATGACTCTGCTCAGGACTC+TGG | 0.494585 | tig0018457:-6819 | Msa1366390:CDS |
GTCATGTCTTCTGGCGGCGA+TGG | 0.494693 | tig0018457:-7731 | Msa1366390:CDS |
TTCAGAATCATCGTCGGTGC+AGG | 0.495095 | tig0018457:+7652 | None:intergenic |
TGGAAGCAAATTGGGCAGAA+AGG | 0.499109 | tig0018457:+7629 | None:intergenic |
CTGCTCAGGACTCTGGTGAA+AGG | 0.499574 | tig0018457:-6812 | Msa1366390:CDS |
GAAGCAGAATTAAGGAGTAA+TGG | 0.500388 | tig0018457:+7476 | None:intergenic |
ATGGGAGAAGAGCGAAGGGA+TGG | 0.502378 | tig0018457:+7495 | None:intergenic |
TCTTCTGGCGGCGATGGCGG+TGG | 0.504625 | tig0018457:-7725 | Msa1366390:CDS |
CACACCGCCGGCGTCGAAAG+AGG | 0.509979 | tig0018457:-7225 | Msa1366390:CDS |
GAAACTATCGGAATCGGGTC+GGG | 0.511848 | tig0018457:+7442 | None:intergenic |
AGTAATGGGAGAAGAGCGAA+GGG | 0.512255 | tig0018457:+7491 | None:intergenic |
TCATGATAAACATGCTTACA+AGG | 0.513615 | tig0018457:+7089 | None:intergenic |
GCAGAGTCATCTGAACCAAA+AGG | 0.515275 | tig0018457:+6831 | None:intergenic |
CACATTCTTCGAGAAAACCT+TGG | 0.516574 | tig0018457:+7609 | None:intergenic |
AGTACCGTTGGTGGTGGTGG+TGG | 0.516728 | tig0018457:-6924 | Msa1366390:CDS |
TGATGATGCGTTGTTGAACT+CGG | 0.517659 | tig0018457:-7174 | Msa1366390:CDS |
GAATTGAATGTTTGCACCGT+CGG | 0.523561 | tig0018457:+7376 | None:intergenic |
AGCGAAGGGGTCGAAACTAT+CGG | 0.525966 | tig0018457:+7430 | None:intergenic |
TCTTCTGCCACGTGTGCAGT+CGG | 0.526650 | tig0018457:-7682 | Msa1366390:CDS |
TGTTTGCACCGTCGGCGTGA+AGG | 0.527557 | tig0018457:+7384 | None:intergenic |
AGAAGAGCGAAGGGATGGAA+TGG | 0.530439 | tig0018457:+7500 | None:intergenic |
CGGAGGAATGATCGTGATGA+TGG | 0.542624 | tig0018457:+7540 | None:intergenic |
GGGATGGTAACGGTGGCGAT+GGG | 0.544115 | tig0018457:-6971 | Msa1366390:CDS |
GGGTCGAAACTATCGGAATC+GGG | 0.544986 | tig0018457:+7437 | None:intergenic |
ATTCTGAAAGTTCTGTGGAC+AGG | 0.545677 | tig0018457:+6867 | None:intergenic |
ATGTCTTCTGGCGGCGATGG+CGG | 0.545998 | tig0018457:-7728 | Msa1366390:CDS |
CTGATTATGAGAACCGGGGT+AGG | 0.547933 | tig0018457:-6992 | Msa1366390:CDS |
TATGAGAACCGGGGTAGGGA+TGG | 0.558385 | tig0018457:-6987 | Msa1366390:CDS |
CGAAACTATCGGAATCGGGT+CGG | 0.558631 | tig0018457:+7441 | None:intergenic |
GGTAACAGTACCGTTGGTGG+TGG | 0.569307 | tig0018457:-6930 | Msa1366390:CDS |
ACAGCCTCTTTCGACGCCGG+CGG | 0.572237 | tig0018457:+7221 | None:intergenic |
TGATTCTGAAGGAAAGCGAA+GGG | 0.572754 | tig0018457:+7416 | None:intergenic |
GAATCGTTACGGCACACCGC+CGG | 0.579890 | tig0018457:-7237 | Msa1366390:CDS |
GAGTTATGCAATTCAAGCCA+TGG | 0.582250 | tig0018457:+7053 | None:intergenic |
AAGTAATCGCCAAGGTTAGA+GGG | 0.588263 | tig0018457:+7311 | None:intergenic |
GCTCAGGACTCTGGTGAAAG+GGG | 0.588802 | tig0018457:-6810 | Msa1366390:CDS |
GCAATTGATTCAGCAGCTTG+CGG | 0.589049 | tig0018457:-7270 | Msa1366390:CDS |
GTTCAACAACGCATCATCAA+CGG | 0.590877 | tig0018457:+7178 | None:intergenic |
TGATTATGAGAACCGGGGTA+GGG | 0.593107 | tig0018457:-6991 | Msa1366390:CDS |
TTAACAGCCTCTTTCGACGC+CGG | 0.593234 | tig0018457:+7218 | None:intergenic |
TGAAGCGGAAAATCACGTTA+GGG | 0.593973 | tig0018457:+7564 | None:intergenic |
TTCCTTCAGAATCATCTCAA+CGG | 0.596074 | tig0018457:-7407 | Msa1366390:CDS |
CTCAACGGCCTTCACGCCGA+CGG | 0.597725 | tig0018457:-7392 | Msa1366390:CDS |
TCATAATCAGCATCATCAGT+AGG | 0.603013 | tig0018457:+7005 | None:intergenic |
ATGATTCTGAAGGAAAGCGA+AGG | 0.604871 | tig0018457:+7415 | None:intergenic |
ATCCTTCTGAATCTGAACCA+GGG | 0.609564 | tig0018457:-7343 | Msa1366390:CDS |
CACCGTTACCATCCCTACCC+CGG | 0.609569 | tig0018457:+6979 | None:intergenic |
TGATGCTGATTATGAGAACC+GGG | 0.618591 | tig0018457:-6997 | Msa1366390:CDS |
GAGATATTCTGAAAGTTCTG+TGG | 0.618924 | tig0018457:+6862 | None:intergenic |
GGCCGTTGAGATGATTCTGA+AGG | 0.619045 | tig0018457:+7405 | None:intergenic |
GTTGGTGGTAACAGTACCGT+TGG | 0.622508 | tig0018457:-6936 | Msa1366390:CDS |
TTAGAGGGAACCCGAAACCC+TGG | 0.623256 | tig0018457:+7326 | None:intergenic |
TAACTCTCCGACTGCACACG+TGG | 0.624454 | tig0018457:+7675 | None:intergenic |
GCAATTCATGTCGACAAACA+GGG | 0.630959 | tig0018457:+7027 | None:intergenic |
GGGTTGAGGTCTGTTGTTGG+TGG | 0.640822 | tig0018457:-6951 | Msa1366390:CDS |
GGTGGTAACAGTACCGTTGG+TGG | 0.642968 | tig0018457:-6933 | Msa1366390:CDS |
GGCTGTTAAGAATCTTCCGA+CGG | 0.643871 | tig0018457:-7204 | Msa1366390:CDS |
CACCGAGGAAGTAATCGCCA+AGG | 0.647106 | tig0018457:+7303 | None:intergenic |
CGGGGTAGGGATGGTAACGG+TGG | 0.648198 | tig0018457:-6978 | Msa1366390:CDS |
AACCCTGGTTCAGATTCAGA+AGG | 0.650452 | tig0018457:+7341 | None:intergenic |
AAATTCGGAATCTGAATCGG+AGG | 0.656689 | tig0018457:+7523 | None:intergenic |
TGAGTTTGAGAAAGGTACAC+AGG | 0.657062 | tig0018457:-7123 | Msa1366390:CDS |
GATCGTGATGATGGTTGAAG+CGG | 0.660952 | tig0018457:+7549 | None:intergenic |
GCATCATCAACGGTCACCGT+CGG | 0.671989 | tig0018457:+7188 | None:intergenic |
GAAAGGTTCAGAATCATCGT+CGG | 0.672533 | tig0018457:+7646 | None:intergenic |
TTACGAGTCATGTCTTCTGG+CGG | 0.684570 | tig0018457:-7737 | None:intergenic |
AACCGGGGTAGGGATGGTAA+CGG | 0.688725 | tig0018457:-6981 | Msa1366390:CDS |
GATTCTGAAGGAAAGCGAAG+GGG | 0.714986 | tig0018457:+7417 | None:intergenic |
GAACTTTCAGAATATCTCTG+CGG | 0.750243 | tig0018457:-6857 | Msa1366390:CDS |
ATTGCTCGAAGCCAGCACCG+AGG | 0.759055 | tig0018457:+7288 | None:intergenic |
GATGCTGATTATGAGAACCG+GGG | 0.800968 | tig0018457:-6996 | Msa1366390:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAGCAGAATTAAGGAGTAAT+GGG | + | tig0018457:7033-7052 | None:intergenic | 30.0% | |
TCATGATAAACATGCTTACA+AGG | + | tig0018457:7421-7440 | None:intergenic | 30.0% | |
AAGCAGAATTAAGGAGTAAT+GGG | + | tig0018457:7033-7052 | None:intergenic | 30.0% | |
TCATGATAAACATGCTTACA+AGG | + | tig0018457:7421-7440 | None:intergenic | 30.0% | |
GAAAACCTTGGAAGCAAATT+GGG | + | tig0018457:6889-6908 | None:intergenic | 35.0% | |
AGAAAACCTTGGAAGCAAAT+TGG | + | tig0018457:6890-6909 | None:intergenic | 35.0% | |
TGGAAATTCGGAATCTGAAT+CGG | + | tig0018457:6990-7009 | None:intergenic | 35.0% | |
GAAGCAGAATTAAGGAGTAA+TGG | + | tig0018457:7034-7053 | None:intergenic | 35.0% | |
TTCCTTCAGAATCATCTCAA+CGG | - | tig0018457:7100-7119 | Msa1366390:CDS | 35.0% | |
TCATAATCAGCATCATCAGT+AGG | + | tig0018457:7505-7524 | None:intergenic | 35.0% | |
! | ATGATGCTGATTATGAGAAC+CGG | - | tig0018457:7509-7528 | Msa1366390:CDS | 35.0% |
! | GAGATATTCTGAAAGTTCTG+TGG | + | tig0018457:7648-7667 | None:intergenic | 35.0% |
GAACTTTCAGAATATCTCTG+CGG | - | tig0018457:7650-7669 | Msa1366390:CDS | 35.0% | |
TGGAAATAGGCAAGAAGATT+TGG | - | tig0018457:7723-7742 | Msa1366390:CDS | 35.0% | |
GAAAACCTTGGAAGCAAATT+GGG | + | tig0018457:6889-6908 | None:intergenic | 35.0% | |
AGAAAACCTTGGAAGCAAAT+TGG | + | tig0018457:6890-6909 | None:intergenic | 35.0% | |
TGGAAATTCGGAATCTGAAT+CGG | + | tig0018457:6990-7009 | None:intergenic | 35.0% | |
GAAGCAGAATTAAGGAGTAA+TGG | + | tig0018457:7034-7053 | None:intergenic | 35.0% | |
TTCCTTCAGAATCATCTCAA+CGG | - | tig0018457:7100-7119 | Msa1366390:CDS | 35.0% | |
TCATAATCAGCATCATCAGT+AGG | + | tig0018457:7505-7524 | None:intergenic | 35.0% | |
! | ATGATGCTGATTATGAGAAC+CGG | - | tig0018457:7509-7528 | Msa1366390:CDS | 35.0% |
! | GAGATATTCTGAAAGTTCTG+TGG | + | tig0018457:7648-7667 | None:intergenic | 35.0% |
GAACTTTCAGAATATCTCTG+CGG | - | tig0018457:7650-7669 | Msa1366390:CDS | 35.0% | |
TGGAAATAGGCAAGAAGATT+TGG | - | tig0018457:7723-7742 | Msa1366390:CDS | 35.0% | |
GAAAGGTTCAGAATCATCGT+CGG | + | tig0018457:6864-6883 | None:intergenic | 40.0% | |
CACATTCTTCGAGAAAACCT+TGG | + | tig0018457:6901-6920 | None:intergenic | 40.0% | |
GGAAAATCACGTTAGGGTTA+GGG | + | tig0018457:6940-6959 | None:intergenic | 40.0% | |
TGAAGCGGAAAATCACGTTA+GGG | + | tig0018457:6946-6965 | None:intergenic | 40.0% | |
TTGAAGCGGAAAATCACGTT+AGG | + | tig0018457:6947-6966 | None:intergenic | 40.0% | |
AAATTCGGAATCTGAATCGG+AGG | + | tig0018457:6987-7006 | None:intergenic | 40.0% | |
GAAGGGATGGAATGGAAATT+CGG | + | tig0018457:7002-7021 | None:intergenic | 40.0% | |
TGGAAACGGAAGCAGAATTA+AGG | + | tig0018457:7042-7061 | None:intergenic | 40.0% | |
TTAATTCTGCTTCCGTTTCC+AGG | - | tig0018457:7041-7060 | Msa1366390:CDS | 40.0% | |
! | TGATTCTGAAGGAAAGCGAA+GGG | + | tig0018457:7094-7113 | None:intergenic | 40.0% |
! | ATGATTCTGAAGGAAAGCGA+AGG | + | tig0018457:7095-7114 | None:intergenic | 40.0% |
GAATTGAATGTTTGCACCGT+CGG | + | tig0018457:7134-7153 | None:intergenic | 40.0% | |
ATCCTTCTGAATCTGAACCA+GGG | - | tig0018457:7164-7183 | Msa1366390:CDS | 40.0% | |
AAGTAATCGCCAAGGTTAGA+GGG | + | tig0018457:7199-7218 | None:intergenic | 40.0% | |
GAGAATGATCCGAATCGTTA+CGG | - | tig0018457:7259-7278 | Msa1366390:CDS | 40.0% | |
GTTCAACAACGCATCATCAA+CGG | + | tig0018457:7332-7351 | None:intergenic | 40.0% | |
! | TGATGATGCGTTGTTGAACT+CGG | - | tig0018457:7333-7352 | Msa1366390:CDS | 40.0% |
!! | GAATCAATGTGCTGTTTGTC+AGG | - | tig0018457:7360-7379 | Msa1366390:CDS | 40.0% |
TGTCAGGATGAGTTTGAGAA+AGG | - | tig0018457:7376-7395 | Msa1366390:CDS | 40.0% | |
! | TGAGTTTGAGAAAGGTACAC+AGG | - | tig0018457:7384-7403 | Msa1366390:CDS | 40.0% |
ATGATGATTGCTTGCTTCCA+TGG | - | tig0018457:7437-7456 | Msa1366390:CDS | 40.0% | |
GAGTTATGCAATTCAAGCCA+TGG | + | tig0018457:7457-7476 | None:intergenic | 40.0% | |
GCAATTCATGTCGACAAACA+GGG | + | tig0018457:7483-7502 | None:intergenic | 40.0% | |
! | TGATGCTGATTATGAGAACC+GGG | - | tig0018457:7510-7529 | Msa1366390:CDS | 40.0% |
! | ATTCTGAAAGTTCTGTGGAC+AGG | + | tig0018457:7643-7662 | None:intergenic | 40.0% |
! | ATATCTCTGCGGTATCCTTT+TGG | - | tig0018457:7661-7680 | Msa1366390:CDS | 40.0% |
GTGAAAGGGGATTTGGAAAT+AGG | - | tig0018457:7710-7729 | Msa1366390:CDS | 40.0% | |
GAAAGGTTCAGAATCATCGT+CGG | + | tig0018457:6864-6883 | None:intergenic | 40.0% | |
CACATTCTTCGAGAAAACCT+TGG | + | tig0018457:6901-6920 | None:intergenic | 40.0% | |
GGAAAATCACGTTAGGGTTA+GGG | + | tig0018457:6940-6959 | None:intergenic | 40.0% | |
TGAAGCGGAAAATCACGTTA+GGG | + | tig0018457:6946-6965 | None:intergenic | 40.0% | |
TTGAAGCGGAAAATCACGTT+AGG | + | tig0018457:6947-6966 | None:intergenic | 40.0% | |
AAATTCGGAATCTGAATCGG+AGG | + | tig0018457:6987-7006 | None:intergenic | 40.0% | |
GAAGGGATGGAATGGAAATT+CGG | + | tig0018457:7002-7021 | None:intergenic | 40.0% | |
TGGAAACGGAAGCAGAATTA+AGG | + | tig0018457:7042-7061 | None:intergenic | 40.0% | |
TTAATTCTGCTTCCGTTTCC+AGG | - | tig0018457:7041-7060 | Msa1366390:CDS | 40.0% | |
! | TGATTCTGAAGGAAAGCGAA+GGG | + | tig0018457:7094-7113 | None:intergenic | 40.0% |
! | ATGATTCTGAAGGAAAGCGA+AGG | + | tig0018457:7095-7114 | None:intergenic | 40.0% |
GAATTGAATGTTTGCACCGT+CGG | + | tig0018457:7134-7153 | None:intergenic | 40.0% | |
ATCCTTCTGAATCTGAACCA+GGG | - | tig0018457:7164-7183 | Msa1366390:CDS | 40.0% | |
AAGTAATCGCCAAGGTTAGA+GGG | + | tig0018457:7199-7218 | None:intergenic | 40.0% | |
GAGAATGATCCGAATCGTTA+CGG | - | tig0018457:7259-7278 | Msa1366390:CDS | 40.0% | |
GTTCAACAACGCATCATCAA+CGG | + | tig0018457:7332-7351 | None:intergenic | 40.0% | |
! | TGATGATGCGTTGTTGAACT+CGG | - | tig0018457:7333-7352 | Msa1366390:CDS | 40.0% |
!! | GAATCAATGTGCTGTTTGTC+AGG | - | tig0018457:7360-7379 | Msa1366390:CDS | 40.0% |
TGTCAGGATGAGTTTGAGAA+AGG | - | tig0018457:7376-7395 | Msa1366390:CDS | 40.0% | |
! | TGAGTTTGAGAAAGGTACAC+AGG | - | tig0018457:7384-7403 | Msa1366390:CDS | 40.0% |
ATGATGATTGCTTGCTTCCA+TGG | - | tig0018457:7437-7456 | Msa1366390:CDS | 40.0% | |
GAGTTATGCAATTCAAGCCA+TGG | + | tig0018457:7457-7476 | None:intergenic | 40.0% | |
GCAATTCATGTCGACAAACA+GGG | + | tig0018457:7483-7502 | None:intergenic | 40.0% | |
! | TGATGCTGATTATGAGAACC+GGG | - | tig0018457:7510-7529 | Msa1366390:CDS | 40.0% |
! | ATTCTGAAAGTTCTGTGGAC+AGG | + | tig0018457:7643-7662 | None:intergenic | 40.0% |
! | ATATCTCTGCGGTATCCTTT+TGG | - | tig0018457:7661-7680 | Msa1366390:CDS | 40.0% |
GTGAAAGGGGATTTGGAAAT+AGG | - | tig0018457:7710-7729 | Msa1366390:CDS | 40.0% | |
TGGAAGCAAATTGGGCAGAA+AGG | + | tig0018457:6881-6900 | None:intergenic | 45.0% | |
! | TTCTGCCCAATTTGCTTCCA+AGG | - | tig0018457:6881-6900 | Msa1366390:CDS | 45.0% |
TTAGGGTTAGGGTTAGGTTC+GGG | + | tig0018457:6929-6948 | None:intergenic | 45.0% | |
GTTAGGGTTAGGGTTAGGTT+CGG | + | tig0018457:6930-6949 | None:intergenic | 45.0% | |
ATCACGTTAGGGTTAGGGTT+AGG | + | tig0018457:6935-6954 | None:intergenic | 45.0% | |
CGGAAAATCACGTTAGGGTT+AGG | + | tig0018457:6941-6960 | None:intergenic | 45.0% | |
!! | GATCGTGATGATGGTTGAAG+CGG | + | tig0018457:6961-6980 | None:intergenic | 45.0% |
! | AGTAATGGGAGAAGAGCGAA+GGG | + | tig0018457:7019-7038 | None:intergenic | 45.0% |
! | GATTCTGAAGGAAAGCGAAG+GGG | + | tig0018457:7093-7112 | None:intergenic | 45.0% |
CATCCTTCTGAATCTGAACC+AGG | - | tig0018457:7163-7182 | Msa1366390:CDS | 45.0% | |
AACCCTGGTTCAGATTCAGA+AGG | + | tig0018457:7169-7188 | None:intergenic | 45.0% | |
CTGAATCTGAACCAGGGTTT+CGG | - | tig0018457:7170-7189 | Msa1366390:CDS | 45.0% | |
TGAATCTGAACCAGGGTTTC+GGG | - | tig0018457:7171-7190 | Msa1366390:CDS | 45.0% | |
GAAGTAATCGCCAAGGTTAG+AGG | + | tig0018457:7200-7219 | None:intergenic | 45.0% | |
AACCTTGGCGATTACTTCCT+CGG | - | tig0018457:7202-7221 | Msa1366390:CDS | 45.0% | |
! | GCAATTGATTCAGCAGCTTG+CGG | - | tig0018457:7237-7256 | Msa1366390:CDS | 45.0% |
GGCTGTTAAGAATCTTCCGA+CGG | - | tig0018457:7303-7322 | Msa1366390:CDS | 45.0% | |
GGCAATTCATGTCGACAAAC+AGG | + | tig0018457:7484-7503 | None:intergenic | 45.0% | |
! | GATGCTGATTATGAGAACCG+GGG | - | tig0018457:7511-7530 | Msa1366390:CDS | 45.0% |
TGATTATGAGAACCGGGGTA+GGG | - | tig0018457:7516-7535 | Msa1366390:CDS | 45.0% | |
GCAGAGTCATCTGAACCAAA+AGG | + | tig0018457:7679-7698 | None:intergenic | 45.0% | |
TGGAAGCAAATTGGGCAGAA+AGG | + | tig0018457:6881-6900 | None:intergenic | 45.0% | |
! | TTCTGCCCAATTTGCTTCCA+AGG | - | tig0018457:6881-6900 | Msa1366390:CDS | 45.0% |
TTAGGGTTAGGGTTAGGTTC+GGG | + | tig0018457:6929-6948 | None:intergenic | 45.0% | |
GTTAGGGTTAGGGTTAGGTT+CGG | + | tig0018457:6930-6949 | None:intergenic | 45.0% | |
ATCACGTTAGGGTTAGGGTT+AGG | + | tig0018457:6935-6954 | None:intergenic | 45.0% | |
CGGAAAATCACGTTAGGGTT+AGG | + | tig0018457:6941-6960 | None:intergenic | 45.0% | |
!! | GATCGTGATGATGGTTGAAG+CGG | + | tig0018457:6961-6980 | None:intergenic | 45.0% |
! | AGTAATGGGAGAAGAGCGAA+GGG | + | tig0018457:7019-7038 | None:intergenic | 45.0% |
! | GATTCTGAAGGAAAGCGAAG+GGG | + | tig0018457:7093-7112 | None:intergenic | 45.0% |
CATCCTTCTGAATCTGAACC+AGG | - | tig0018457:7163-7182 | Msa1366390:CDS | 45.0% | |
AACCCTGGTTCAGATTCAGA+AGG | + | tig0018457:7169-7188 | None:intergenic | 45.0% | |
CTGAATCTGAACCAGGGTTT+CGG | - | tig0018457:7170-7189 | Msa1366390:CDS | 45.0% | |
TGAATCTGAACCAGGGTTTC+GGG | - | tig0018457:7171-7190 | Msa1366390:CDS | 45.0% | |
GAAGTAATCGCCAAGGTTAG+AGG | + | tig0018457:7200-7219 | None:intergenic | 45.0% | |
AACCTTGGCGATTACTTCCT+CGG | - | tig0018457:7202-7221 | Msa1366390:CDS | 45.0% | |
! | GCAATTGATTCAGCAGCTTG+CGG | - | tig0018457:7237-7256 | Msa1366390:CDS | 45.0% |
GGCTGTTAAGAATCTTCCGA+CGG | - | tig0018457:7303-7322 | Msa1366390:CDS | 45.0% | |
GGCAATTCATGTCGACAAAC+AGG | + | tig0018457:7484-7503 | None:intergenic | 45.0% | |
! | GATGCTGATTATGAGAACCG+GGG | - | tig0018457:7511-7530 | Msa1366390:CDS | 45.0% |
TGATTATGAGAACCGGGGTA+GGG | - | tig0018457:7516-7535 | Msa1366390:CDS | 45.0% | |
GCAGAGTCATCTGAACCAAA+AGG | + | tig0018457:7679-7698 | None:intergenic | 45.0% | |
TTCAGAATCATCGTCGGTGC+AGG | + | tig0018457:6858-6877 | None:intergenic | 50.0% | |
CGGAGGAATGATCGTGATGA+TGG | + | tig0018457:6970-6989 | None:intergenic | 50.0% | |
AGAAGAGCGAAGGGATGGAA+TGG | + | tig0018457:7010-7029 | None:intergenic | 50.0% | |
! | GAGTAATGGGAGAAGAGCGA+AGG | + | tig0018457:7020-7039 | None:intergenic | 50.0% |
GAAACTATCGGAATCGGGTC+GGG | + | tig0018457:7068-7087 | None:intergenic | 50.0% | |
CGAAACTATCGGAATCGGGT+CGG | + | tig0018457:7069-7088 | None:intergenic | 50.0% | |
GGGTCGAAACTATCGGAATC+GGG | + | tig0018457:7073-7092 | None:intergenic | 50.0% | |
GGGGTCGAAACTATCGGAAT+CGG | + | tig0018457:7074-7093 | None:intergenic | 50.0% | |
AGCGAAGGGGTCGAAACTAT+CGG | + | tig0018457:7080-7099 | None:intergenic | 50.0% | |
GGCCGTTGAGATGATTCTGA+AGG | + | tig0018457:7105-7124 | None:intergenic | 50.0% | |
!! | TTTCGGGTTCCCTCTAACCT+TGG | - | tig0018457:7187-7206 | Msa1366390:CDS | 50.0% |
TTAACAGCCTCTTTCGACGC+CGG | + | tig0018457:7292-7311 | None:intergenic | 50.0% | |
CTGATTATGAGAACCGGGGT+AGG | - | tig0018457:7515-7534 | Msa1366390:CDS | 50.0% | |
!! | GATGGGTTGAGGTCTGTTGT+TGG | - | tig0018457:7553-7572 | Msa1366390:CDS | 50.0% |
!! | GTTGGTGGTAACAGTACCGT+TGG | - | tig0018457:7571-7590 | Msa1366390:CDS | 50.0% |
TGGTTCAGATGACTCTGCTC+AGG | - | tig0018457:7681-7700 | Msa1366390:CDS | 50.0% | |
TGCTCAGGACTCTGGTGAAA+GGG | - | tig0018457:7696-7715 | Msa1366390:CDS | 50.0% | |
GACTCTGGTGAAAGGGGATT+TGG | - | tig0018457:7703-7722 | Msa1366390:CDS | 50.0% | |
TTCAGAATCATCGTCGGTGC+AGG | + | tig0018457:6858-6877 | None:intergenic | 50.0% | |
CGGAGGAATGATCGTGATGA+TGG | + | tig0018457:6970-6989 | None:intergenic | 50.0% | |
AGAAGAGCGAAGGGATGGAA+TGG | + | tig0018457:7010-7029 | None:intergenic | 50.0% | |
! | GAGTAATGGGAGAAGAGCGA+AGG | + | tig0018457:7020-7039 | None:intergenic | 50.0% |
GAAACTATCGGAATCGGGTC+GGG | + | tig0018457:7068-7087 | None:intergenic | 50.0% | |
CGAAACTATCGGAATCGGGT+CGG | + | tig0018457:7069-7088 | None:intergenic | 50.0% | |
GGGTCGAAACTATCGGAATC+GGG | + | tig0018457:7073-7092 | None:intergenic | 50.0% | |
GGGGTCGAAACTATCGGAAT+CGG | + | tig0018457:7074-7093 | None:intergenic | 50.0% | |
AGCGAAGGGGTCGAAACTAT+CGG | + | tig0018457:7080-7099 | None:intergenic | 50.0% | |
GGCCGTTGAGATGATTCTGA+AGG | + | tig0018457:7105-7124 | None:intergenic | 50.0% | |
!! | TTTCGGGTTCCCTCTAACCT+TGG | - | tig0018457:7187-7206 | Msa1366390:CDS | 50.0% |
TTAACAGCCTCTTTCGACGC+CGG | + | tig0018457:7292-7311 | None:intergenic | 50.0% | |
CTGATTATGAGAACCGGGGT+AGG | - | tig0018457:7515-7534 | Msa1366390:CDS | 50.0% | |
!! | GATGGGTTGAGGTCTGTTGT+TGG | - | tig0018457:7553-7572 | Msa1366390:CDS | 50.0% |
!! | GTTGGTGGTAACAGTACCGT+TGG | - | tig0018457:7571-7590 | Msa1366390:CDS | 50.0% |
TGGTTCAGATGACTCTGCTC+AGG | - | tig0018457:7681-7700 | Msa1366390:CDS | 50.0% | |
TGCTCAGGACTCTGGTGAAA+GGG | - | tig0018457:7696-7715 | Msa1366390:CDS | 50.0% | |
GACTCTGGTGAAAGGGGATT+TGG | - | tig0018457:7703-7722 | Msa1366390:CDS | 50.0% | |
TCTTCTGCCACGTGTGCAGT+CGG | - | tig0018457:6825-6844 | Msa1366390:CDS | 55.0% | |
TAACTCTCCGACTGCACACG+TGG | + | tig0018457:6835-6854 | None:intergenic | 55.0% | |
ATGGGAGAAGAGCGAAGGGA+TGG | + | tig0018457:7015-7034 | None:intergenic | 55.0% | |
TTAGAGGGAACCCGAAACCC+TGG | + | tig0018457:7184-7203 | None:intergenic | 55.0% | |
CACCGAGGAAGTAATCGCCA+AGG | + | tig0018457:7207-7226 | None:intergenic | 55.0% | |
GCATCATCAACGGTCACCGT+CGG | + | tig0018457:7322-7341 | None:intergenic | 55.0% | |
TATGAGAACCGGGGTAGGGA+TGG | - | tig0018457:7520-7539 | Msa1366390:CDS | 55.0% | |
AACCGGGGTAGGGATGGTAA+CGG | - | tig0018457:7526-7545 | Msa1366390:CDS | 55.0% | |
GGGTTGAGGTCTGTTGTTGG+TGG | - | tig0018457:7556-7575 | Msa1366390:CDS | 55.0% | |
GGTGGTAACAGTACCGTTGG+TGG | - | tig0018457:7574-7593 | Msa1366390:CDS | 55.0% | |
! | GGTAACAGTACCGTTGGTGG+TGG | - | tig0018457:7577-7596 | Msa1366390:CDS | 55.0% |
!! | AACAGTACCGTTGGTGGTGG+TGG | - | tig0018457:7580-7599 | Msa1366390:CDS | 55.0% |
GATGACTCTGCTCAGGACTC+TGG | - | tig0018457:7688-7707 | Msa1366390:CDS | 55.0% | |
CTGCTCAGGACTCTGGTGAA+AGG | - | tig0018457:7695-7714 | Msa1366390:CDS | 55.0% | |
GCTCAGGACTCTGGTGAAAG+GGG | - | tig0018457:7697-7716 | Msa1366390:CDS | 55.0% | |
TCTTCTGCCACGTGTGCAGT+CGG | - | tig0018457:6825-6844 | Msa1366390:CDS | 55.0% | |
TAACTCTCCGACTGCACACG+TGG | + | tig0018457:6835-6854 | None:intergenic | 55.0% | |
ATGGGAGAAGAGCGAAGGGA+TGG | + | tig0018457:7015-7034 | None:intergenic | 55.0% | |
TTAGAGGGAACCCGAAACCC+TGG | + | tig0018457:7184-7203 | None:intergenic | 55.0% | |
CACCGAGGAAGTAATCGCCA+AGG | + | tig0018457:7207-7226 | None:intergenic | 55.0% | |
GCATCATCAACGGTCACCGT+CGG | + | tig0018457:7322-7341 | None:intergenic | 55.0% | |
TATGAGAACCGGGGTAGGGA+TGG | - | tig0018457:7520-7539 | Msa1366390:CDS | 55.0% | |
AACCGGGGTAGGGATGGTAA+CGG | - | tig0018457:7526-7545 | Msa1366390:CDS | 55.0% | |
GGGTTGAGGTCTGTTGTTGG+TGG | - | tig0018457:7556-7575 | Msa1366390:CDS | 55.0% | |
GGTGGTAACAGTACCGTTGG+TGG | - | tig0018457:7574-7593 | Msa1366390:CDS | 55.0% | |
! | GGTAACAGTACCGTTGGTGG+TGG | - | tig0018457:7577-7596 | Msa1366390:CDS | 55.0% |
!! | AACAGTACCGTTGGTGGTGG+TGG | - | tig0018457:7580-7599 | Msa1366390:CDS | 55.0% |
GATGACTCTGCTCAGGACTC+TGG | - | tig0018457:7688-7707 | Msa1366390:CDS | 55.0% | |
CTGCTCAGGACTCTGGTGAA+AGG | - | tig0018457:7695-7714 | Msa1366390:CDS | 55.0% | |
GCTCAGGACTCTGGTGAAAG+GGG | - | tig0018457:7697-7716 | Msa1366390:CDS | 55.0% | |
ATGTCTTCTGGCGGCGATGG+CGG | - | tig0018457:6779-6798 | Msa1366390:CDS | 60.0% | |
ATCGGGTCGGGTCCTGGAAA+CGG | + | tig0018457:7056-7075 | None:intergenic | 60.0% | |
TGTTTGCACCGTCGGCGTGA+AGG | + | tig0018457:7126-7145 | None:intergenic | 60.0% | |
! | GGCGATTACTTCCTCGGTGC+TGG | - | tig0018457:7208-7227 | Msa1366390:CDS | 60.0% |
ATTGCTCGAAGCCAGCACCG+AGG | + | tig0018457:7222-7241 | None:intergenic | 60.0% | |
GGCGGTGTGCCGTAACGATT+CGG | + | tig0018457:7271-7290 | None:intergenic | 60.0% | |
GAATCGTTACGGCACACCGC+CGG | - | tig0018457:7270-7289 | Msa1366390:CDS | 60.0% | |
CACCGTTACCATCCCTACCC+CGG | + | tig0018457:7531-7550 | None:intergenic | 60.0% | |
!! | AGGGATGGTAACGGTGGCGA+TGG | - | tig0018457:7535-7554 | Msa1366390:CDS | 60.0% |
!! | GGGATGGTAACGGTGGCGAT+GGG | - | tig0018457:7536-7555 | Msa1366390:CDS | 60.0% |
!! | GTAACGGTGGCGATGGGTTG+AGG | - | tig0018457:7542-7561 | Msa1366390:CDS | 60.0% |
!! | AGTACCGTTGGTGGTGGTGG+TGG | - | tig0018457:7583-7602 | Msa1366390:CDS | 60.0% |
ACCACCACCACCACCACCAA+CGG | + | tig0018457:7590-7609 | None:intergenic | 60.0% | |
ATGTCTTCTGGCGGCGATGG+CGG | - | tig0018457:6779-6798 | Msa1366390:CDS | 60.0% | |
ATCGGGTCGGGTCCTGGAAA+CGG | + | tig0018457:7056-7075 | None:intergenic | 60.0% | |
TGTTTGCACCGTCGGCGTGA+AGG | + | tig0018457:7126-7145 | None:intergenic | 60.0% | |
! | GGCGATTACTTCCTCGGTGC+TGG | - | tig0018457:7208-7227 | Msa1366390:CDS | 60.0% |
ATTGCTCGAAGCCAGCACCG+AGG | + | tig0018457:7222-7241 | None:intergenic | 60.0% | |
GGCGGTGTGCCGTAACGATT+CGG | + | tig0018457:7271-7290 | None:intergenic | 60.0% | |
GAATCGTTACGGCACACCGC+CGG | - | tig0018457:7270-7289 | Msa1366390:CDS | 60.0% | |
CACCGTTACCATCCCTACCC+CGG | + | tig0018457:7531-7550 | None:intergenic | 60.0% | |
!! | AGGGATGGTAACGGTGGCGA+TGG | - | tig0018457:7535-7554 | Msa1366390:CDS | 60.0% |
!! | GGGATGGTAACGGTGGCGAT+GGG | - | tig0018457:7536-7555 | Msa1366390:CDS | 60.0% |
!! | GTAACGGTGGCGATGGGTTG+AGG | - | tig0018457:7542-7561 | Msa1366390:CDS | 60.0% |
!! | AGTACCGTTGGTGGTGGTGG+TGG | - | tig0018457:7583-7602 | Msa1366390:CDS | 60.0% |
ACCACCACCACCACCACCAA+CGG | + | tig0018457:7590-7609 | None:intergenic | 60.0% | |
ATCGGAATCGGGTCGGGTCC+TGG | + | tig0018457:7062-7081 | None:intergenic | 65.0% | |
CTCAACGGCCTTCACGCCGA+CGG | - | tig0018457:7115-7134 | Msa1366390:CDS | 65.0% | |
ACAGCCTCTTTCGACGCCGG+CGG | + | tig0018457:7289-7308 | None:intergenic | 65.0% | |
!! | CGGGGTAGGGATGGTAACGG+TGG | - | tig0018457:7529-7548 | Msa1366390:CDS | 65.0% |
!! | ACCGTTGGTGGTGGTGGTGG+TGG | - | tig0018457:7586-7605 | Msa1366390:CDS | 65.0% |
!! | GTTGGTGGTGGTGGTGGTGG+TGG | - | tig0018457:7589-7608 | Msa1366390:CDS | 65.0% |
!! | GGTGGTGGTGGTGGTAGCAG+TGG | - | tig0018457:7598-7617 | Msa1366390:CDS | 65.0% |
!! | GGTGGTGGTGGTAGCAGTGG+TGG | - | tig0018457:7601-7620 | Msa1366390:CDS | 65.0% |
! | GGTGGTGGTAGCAGTGGTGG+TGG | - | tig0018457:7604-7623 | Msa1366390:CDS | 65.0% |
!! | GGTGGTAGCAGTGGTGGTGG+AGG | - | tig0018457:7607-7626 | Msa1366390:CDS | 65.0% |
!! | GGTAGCAGTGGTGGTGGAGG+AGG | - | tig0018457:7610-7629 | Msa1366390:CDS | 65.0% |
ATCGGAATCGGGTCGGGTCC+TGG | + | tig0018457:7062-7081 | None:intergenic | 65.0% | |
CTCAACGGCCTTCACGCCGA+CGG | - | tig0018457:7115-7134 | Msa1366390:CDS | 65.0% | |
ACAGCCTCTTTCGACGCCGG+CGG | + | tig0018457:7289-7308 | None:intergenic | 65.0% | |
!! | CGGGGTAGGGATGGTAACGG+TGG | - | tig0018457:7529-7548 | Msa1366390:CDS | 65.0% |
!! | ACCGTTGGTGGTGGTGGTGG+TGG | - | tig0018457:7586-7605 | Msa1366390:CDS | 65.0% |
!! | GTTGGTGGTGGTGGTGGTGG+TGG | - | tig0018457:7589-7608 | Msa1366390:CDS | 65.0% |
!! | GGTGGTGGTGGTGGTAGCAG+TGG | - | tig0018457:7598-7617 | Msa1366390:CDS | 65.0% |
!! | GGTGGTGGTGGTAGCAGTGG+TGG | - | tig0018457:7601-7620 | Msa1366390:CDS | 65.0% |
! | GGTGGTGGTAGCAGTGGTGG+TGG | - | tig0018457:7604-7623 | Msa1366390:CDS | 65.0% |
!! | GGTGGTAGCAGTGGTGGTGG+AGG | - | tig0018457:7607-7626 | Msa1366390:CDS | 65.0% |
!! | GGTAGCAGTGGTGGTGGAGG+AGG | - | tig0018457:7610-7629 | Msa1366390:CDS | 65.0% |
! | TCTTCTGGCGGCGATGGCGG+TGG | - | tig0018457:6782-6801 | Msa1366390:CDS | 70.0% |
! | CACACCGCCGGCGTCGAAAG+AGG | - | tig0018457:7282-7301 | Msa1366390:CDS | 70.0% |
! | TCTTCTGGCGGCGATGGCGG+TGG | - | tig0018457:6782-6801 | Msa1366390:CDS | 70.0% |
! | CACACCGCCGGCGTCGAAAG+AGG | - | tig0018457:7282-7301 | Msa1366390:CDS | 70.0% |
! | TCTGGCGGCGATGGCGGTGG+TGG | - | tig0018457:6785-6804 | Msa1366390:CDS | 75.0% |
!! | GATGGCGGTGGTGGCGGTGG+AGG | - | tig0018457:6794-6813 | Msa1366390:CDS | 75.0% |
! | TCTGGCGGCGATGGCGGTGG+TGG | - | tig0018457:6785-6804 | Msa1366390:CDS | 75.0% |
!! | GATGGCGGTGGTGGCGGTGG+AGG | - | tig0018457:6794-6813 | Msa1366390:CDS | 75.0% |
!! | GGCGGCGATGGCGGTGGTGG+CGG | - | tig0018457:6788-6807 | Msa1366390:CDS | 80.0% |
!!! | GGCGATGGCGGTGGTGGCGG+TGG | - | tig0018457:6791-6810 | Msa1366390:CDS | 80.0% |
!! | GGCGGCGATGGCGGTGGTGG+CGG | - | tig0018457:6788-6807 | Msa1366390:CDS | 80.0% |
!!! | GGCGATGGCGGTGGTGGCGG+TGG | - | tig0018457:6791-6810 | Msa1366390:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0018457 | gene | 6779 | 7750 | 6779 | ID=Msa1366390;Name=Msa1366390 |
tig0018457 | mRNA | 6779 | 7750 | 6779 | ID=Msa1366390-mRNA-1;Parent=Msa1366390;Name=Msa1366390-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|323 |
tig0018457 | exon | 6779 | 7750 | 6779 | ID=Msa1366390-mRNA-1:exon:15130;Parent=Msa1366390-mRNA-1 |
tig0018457 | CDS | 6779 | 7750 | 6779 | ID=Msa1366390-mRNA-1:cds;Parent=Msa1366390-mRNA-1 |
Gene Sequence |
Protein sequence |