Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125220 | XP_003590781.1 | 89.417 | 652 | 35 | 5 | 1 | 624 | 1 | 646 | 0.0 | 1162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125220 | sp|Q9SS87|SEOB_ARATH | 24.536 | 701 | 416 | 25 | 16 | 614 | 39 | 728 | 1.22e-37 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125220 | A8C978 | 89.417 | 652 | 35 | 5 | 1 | 624 | 1 | 646 | 0.0 | 1162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa0125220 | 0.800176 | 1.629627e-48 | -8.615850e-47 |
| Msa0015150 | Msa0125220 | 0.818271 | 2.138280e-52 | -8.615850e-47 |
| Msa0029990 | Msa0125220 | 0.841167 | 5.599319e-58 | -8.615850e-47 |
| Msa0064120 | Msa0125220 | 0.821809 | 3.313968e-53 | -8.615850e-47 |
| Msa0071840 | Msa0125220 | 0.843671 | 1.214281e-58 | -8.615850e-47 |
| Msa0125220 | Msa0155180 | 0.835767 | 1.384884e-56 | -8.615850e-47 |
| Msa0125220 | Msa0159980 | 0.836441 | 9.341164e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125220 | MtrunA17_Chr1g0187001 | 89.417 | 652 | 35 | 5 | 1 | 624 | 1 | 646 | 0.0 | 1162 |
| Msa0125220 | MtrunA17_Chr1g0186981 | 55.267 | 655 | 249 | 11 | 2 | 622 | 24 | 668 | 0.0 | 717 |
| Msa0125220 | MtrunA17_Chr1g0186991 | 48.092 | 655 | 284 | 11 | 7 | 617 | 27 | 669 | 0.0 | 610 |
| Msa0125220 | MtrunA17_Chr1g0165791 | 44.313 | 677 | 298 | 16 | 2 | 614 | 16 | 677 | 3.67e-178 | 522 |
| Msa0125220 | MtrunA17_Chr1g0186851 | 30.746 | 670 | 373 | 21 | 12 | 617 | 21 | 663 | 3.17e-88 | 288 |
| Msa0125220 | MtrunA17_Chr1g0186841 | 31.004 | 687 | 380 | 21 | 3 | 624 | 13 | 670 | 8.79e-88 | 287 |
| Msa0125220 | MtrunA17_Chr1g0186861 | 30.988 | 668 | 370 | 18 | 12 | 614 | 21 | 662 | 2.29e-83 | 275 |
| Msa0125220 | MtrunA17_Chr1g0187041 | 30.804 | 672 | 372 | 23 | 12 | 617 | 21 | 665 | 6.01e-81 | 268 |
| Msa0125220 | MtrunA17_Chr1g0186911 | 31.741 | 586 | 329 | 16 | 74 | 614 | 1 | 560 | 1.23e-73 | 246 |
| Msa0125220 | MtrunA17_Chr8g0364451 | 89.011 | 91 | 10 | 0 | 74 | 164 | 49 | 139 | 6.80e-46 | 160 |
| Msa0125220 | MtrunA17_Chr7g0226571 | 24.618 | 719 | 419 | 24 | 3 | 617 | 14 | 713 | 5.47e-41 | 159 |
| Msa0125220 | MtrunA17_Chr8g0381301 | 25.891 | 645 | 362 | 25 | 60 | 615 | 87 | 704 | 1.77e-38 | 151 |
| Msa0125220 | MtrunA17_Chr3g0116601 | 25.177 | 707 | 389 | 26 | 16 | 613 | 29 | 704 | 4.81e-37 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125220 | AT3G01680.1 | 24.536 | 701 | 416 | 25 | 16 | 614 | 39 | 728 | 1.24e-38 | 152 |
| Msa0125220 | AT3G01670.1 | 24.038 | 624 | 337 | 27 | 87 | 613 | 237 | 820 | 2.21e-26 | 115 |
| Msa0125220 | AT3G01670.2 | 24.038 | 624 | 337 | 27 | 87 | 613 | 261 | 844 | 3.30e-26 | 114 |
Find 118 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCCCTGTTGCTGTTTAT+TGG | 0.147041 | 1_3:+53639475 | Msa0125220:CDS |
| TAACCATCTTGTTTCCTAAA+AGG | 0.185586 | 1_3:-53640611 | None:intergenic |
| TAAGAGAGCATTTGAACTTT+TGG | 0.194897 | 1_3:+53640495 | Msa0125220:CDS |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1_3:+53639234 | Msa0125220:CDS |
| AAGAATCAAATTTGGTCTTC+TGG | 0.234379 | 1_3:-53640409 | None:intergenic |
| TGGTGGTGCCATCATATATT+AGG | 0.251348 | 1_3:-53640107 | None:intergenic |
| ATTCTTCAAAGAATCAAATT+TGG | 0.263389 | 1_3:-53640417 | None:intergenic |
| AAGAAATCTATAATATCTTT+AGG | 0.277385 | 1_3:-53640051 | None:intergenic |
| CCCTCTCTCAGATTCACTTC+TGG | 0.300659 | 1_3:-53641546 | None:intergenic |
| AGCTTCAGTGTGCGAAATTC+TGG | 0.306542 | 1_3:-53638986 | None:intergenic |
| TTATCAGTGAATAAGTAAAT+TGG | 0.312760 | 1_3:-53638036 | None:intergenic |
| ATATTGATAAATTCAACTTT+AGG | 0.321318 | 1_3:-53638062 | None:intergenic |
| AGATTTGGTGGAGTTGATAA+TGG | 0.334362 | 1_3:+53639362 | Msa0125220:CDS |
| GTCCCGGTGTTGGGCCCTTT+AGG | 0.341084 | 1_3:+53640530 | Msa0125220:CDS |
| ATTATCCAATAAACAGCAAC+AGG | 0.344665 | 1_3:-53639480 | None:intergenic |
| ACACGTCCACAAGTAGGATT+TGG | 0.347065 | 1_3:-53641460 | None:intergenic |
| AAGCTTAACATTGTAGCCTT+TGG | 0.355728 | 1_3:-53641236 | None:intergenic |
| AAACTAATCGAATCACAAAT+AGG | 0.356919 | 1_3:+53639875 | Msa0125220:CDS |
| CACTGTCCCTGTCACAGATT+TGG | 0.361754 | 1_3:+53639347 | Msa0125220:CDS |
| CATTCATTATTTCACCTAAA+GGG | 0.366267 | 1_3:-53640544 | None:intergenic |
| AAGCCTATCGTCCCGGTGTT+GGG | 0.368586 | 1_3:+53640521 | Msa0125220:CDS |
| GCTTCCATTGTTGCTGCTAC+TGG | 0.377751 | 1_3:+53639504 | Msa0125220:CDS |
| AAAGGCATGAAACTATCTTA+AGG | 0.378342 | 1_3:+53641029 | Msa0125220:CDS |
| TAGCATTGGAGAAAACAAAA+AGG | 0.395952 | 1_3:+53641011 | Msa0125220:intron |
| ACTGAAGCTGATTTCTTGTC+AGG | 0.401068 | 1_3:+53639000 | Msa0125220:CDS |
| TTCTGTCCAATGTTATACTT+AGG | 0.403805 | 1_3:+53638210 | Msa0125220:CDS |
| AACAGCTGAAAACCTATTCA+TGG | 0.408837 | 1_3:+53639187 | Msa0125220:CDS |
| AACCATCTTGTTTCCTAAAA+GGG | 0.413161 | 1_3:-53640610 | None:intergenic |
| TCATTCATTATTTCACCTAA+AGG | 0.415370 | 1_3:-53640545 | None:intergenic |
| CTTTGGCAGCTTAGTTCCAT+TGG | 0.421659 | 1_3:-53638093 | None:intergenic |
| ATCTATAATATCTTTAGGAT+TGG | 0.424394 | 1_3:-53640046 | None:intergenic |
| TTCTATCCATGACAGATTGC+AGG | 0.426349 | 1_3:+53640310 | Msa0125220:CDS |
| TAAGCCTATCGTCCCGGTGT+TGG | 0.429788 | 1_3:+53640520 | Msa0125220:CDS |
| GAGAGTGAATCTTGGAATAC+AGG | 0.438911 | 1_3:+53640676 | Msa0125220:CDS |
| GCTGCCAAAGCCATTTGATC+TGG | 0.443876 | 1_3:+53638106 | Msa0125220:CDS |
| AAGGCATGAAACTATCTTAA+GGG | 0.447013 | 1_3:+53641030 | Msa0125220:CDS |
| TGAGACTCATCCAGATCAAA+TGG | 0.452714 | 1_3:-53638116 | None:intergenic |
| CAAAGAGTATTATGATACTA+AGG | 0.453020 | 1_3:+53641351 | Msa0125220:CDS |
| AATGTTGATAATAATATCAA+TGG | 0.456433 | 1_3:+53641412 | Msa0125220:CDS |
| TCATCCAGATCAAATGGCTT+TGG | 0.458958 | 1_3:-53638110 | None:intergenic |
| GATAAGAGGTTACAAGAAAG+AGG | 0.466169 | 1_3:+53640349 | Msa0125220:CDS |
| TAACCTCTTATCACTTCTTG+TGG | 0.473257 | 1_3:-53640338 | None:intergenic |
| CACGTCCACAAGTAGGATTT+GGG | 0.476123 | 1_3:-53641459 | None:intergenic |
| GCTGCTACTGGCAACATCAT+TGG | 0.481288 | 1_3:+53639516 | Msa0125220:CDS |
| AGCCCTAGCTGCTTTCACTT+TGG | 0.482034 | 1_3:+53639227 | Msa0125220:CDS |
| CATTGGACAGAATGTGGAAA+AGG | 0.482515 | 1_3:-53638199 | None:intergenic |
| TTCTGGTCATCGGTAAAGAC+GGG | 0.485794 | 1_3:-53640392 | None:intergenic |
| CACCTAAAGGGCCCAACACC+GGG | 0.486188 | 1_3:-53640532 | None:intergenic |
| CAAACAAGATCCACAAGGTT+GGG | 0.491870 | 1_3:+53641204 | Msa0125220:CDS |
| GTTACAAAGAGAGTGAATCT+TGG | 0.495476 | 1_3:+53640668 | Msa0125220:CDS |
| TGTCCCTGTCACAGATTTGG+TGG | 0.499340 | 1_3:+53639350 | Msa0125220:CDS |
| ATAATAGAACACTATCACTT+AGG | 0.501387 | 1_3:+53641061 | Msa0125220:CDS |
| AACTCCACCAAATCTGTGAC+AGG | 0.502153 | 1_3:-53639354 | None:intergenic |
| TCTGGATGAGTCTCAAATCC+TGG | 0.503173 | 1_3:+53638124 | Msa0125220:CDS |
| ATTCACTTCTGGCCATTCTG+TGG | 0.508422 | 1_3:-53641535 | None:intergenic |
| ATATTCATGAGTGGGCCACT+TGG | 0.511273 | 1_3:+53639397 | Msa0125220:CDS |
| TCTGTCCAATGTTATACTTA+GGG | 0.511965 | 1_3:+53638211 | Msa0125220:CDS |
| ATCAATATGTCATTATCCAA+TGG | 0.513280 | 1_3:+53638077 | Msa0125220:exon |
| GGGTCAGATAAACTTTATCC+AGG | 0.513615 | 1_3:-53638142 | None:intergenic |
| TCAGCCAAGGTTTGATGCAT+AGG | 0.514819 | 1_3:-53641274 | None:intergenic |
| AGACAAGGCTAGCAGAAAGC+AGG | 0.517579 | 1_3:+53638951 | Msa0125220:intron |
| GGGCCCAACACCGGGACGAT+AGG | 0.519433 | 1_3:-53640524 | None:intergenic |
| GGAGATTATCTCCATTGCGT+TGG | 0.528009 | 1_3:-53640086 | None:intergenic |
| TCTCACAGTCTATAGCATCT+TGG | 0.533674 | 1_3:-53641150 | None:intergenic |
| GATAATCTCCTAATATATGA+TGG | 0.534586 | 1_3:+53640099 | Msa0125220:CDS |
| TATCACACTTGTCATCATCA+TGG | 0.537605 | 1_3:-53638169 | None:intergenic |
| TCCTACTTGTGGACGTGTGA+TGG | 0.538034 | 1_3:+53641465 | Msa0125220:CDS |
| TCAAACAAGATCCACAAGGT+TGG | 0.540906 | 1_3:+53641203 | Msa0125220:CDS |
| ACTTGTCATCATCATGGAGG+TGG | 0.545154 | 1_3:-53638163 | None:intergenic |
| ATTCCAAAGTGAAAGCAGCT+AGG | 0.545603 | 1_3:-53639230 | None:intergenic |
| AGGCTAGCAGAAAGCAGGGC+TGG | 0.547942 | 1_3:+53638956 | Msa0125220:CDS |
| AATCCACAAGAAGTGATAAG+AGG | 0.548578 | 1_3:+53640335 | Msa0125220:CDS |
| TCACCTAAAGGGCCCAACAC+CGG | 0.548774 | 1_3:-53640533 | None:intergenic |
| CTTCTGGTCATCGGTAAAGA+CGG | 0.556436 | 1_3:-53640393 | None:intergenic |
| AAATTTGGTCTTCTGGTCAT+CGG | 0.557035 | 1_3:-53640402 | None:intergenic |
| CCATATATCAAAATCAGCCA+AGG | 0.560335 | 1_3:-53641287 | None:intergenic |
| TTCCAAAGTGAAAGCAGCTA+GGG | 0.561594 | 1_3:-53639229 | None:intergenic |
| TTGGGATAAGCCTATCGTCC+CGG | 0.562483 | 1_3:+53640514 | Msa0125220:CDS |
| GTTAACAAGTTGATCTGATG+AGG | 0.564705 | 1_3:-53639286 | None:intergenic |
| TCTCATCGTCAACTTTGTTG+AGG | 0.566939 | 1_3:-53640274 | None:intergenic |
| GATGATACTGCTCCACAGAA+TGG | 0.567063 | 1_3:+53641523 | Msa0125220:CDS |
| GATTACTCTTCTGAGTTACC+TGG | 0.567472 | 1_3:+53640461 | Msa0125220:CDS |
| ACAGCTGAAAACCTATTCAT+GGG | 0.576028 | 1_3:+53639188 | Msa0125220:CDS |
| TGGGCCACTTGGTCTAGTGT+TGG | 0.577097 | 1_3:+53639408 | Msa0125220:CDS |
| GATTGTCCTGCAATCTGTCA+TGG | 0.583670 | 1_3:-53640316 | None:intergenic |
| GACAAGGCTAGCAGAAAGCA+GGG | 0.584742 | 1_3:+53638952 | Msa0125220:intron |
| TGCAATGCATCAGACAAAGA+AGG | 0.586363 | 1_3:-53639450 | None:intergenic |
| GTATAACATTGGACAGAATG+TGG | 0.592797 | 1_3:-53638205 | None:intergenic |
| GTTTACCCTAAGTATAACAT+TGG | 0.592906 | 1_3:-53638216 | None:intergenic |
| GTTGCCAGTAGCAGCAACAA+TGG | 0.594515 | 1_3:-53639508 | None:intergenic |
| ATAGCGTTCGCCACGAGGCG+TGG | 0.598525 | 1_3:-53639136 | None:intergenic |
| AATAATGAATGATGATGCAA+TGG | 0.598632 | 1_3:+53640556 | Msa0125220:CDS |
| TGCTTCTGCATATTCATGAG+TGG | 0.600233 | 1_3:+53639388 | Msa0125220:CDS |
| CAAATAGGTGACACACTTGG+TGG | 0.600326 | 1_3:+53639890 | Msa0125220:CDS |
| TCATGCCCAAATCCTACTTG+TGG | 0.601063 | 1_3:+53641454 | Msa0125220:CDS |
| AAGCTTCTGATCCAACGCAA+TGG | 0.610030 | 1_3:+53640075 | Msa0125220:CDS |
| GTGAGAATAACCCAACCTTG+TGG | 0.613884 | 1_3:-53641214 | None:intergenic |
| TCTCTTATGAGTCTAATGCC+AGG | 0.615558 | 1_3:-53640479 | None:intergenic |
| GCTTCTGCATATTCATGAGT+GGG | 0.617235 | 1_3:+53639389 | Msa0125220:CDS |
| GGTTGGGTTATTCTCACCAA+AGG | 0.619142 | 1_3:+53641220 | Msa0125220:CDS |
| TGAGCCTATGCATCAAACCT+TGG | 0.620834 | 1_3:+53641270 | Msa0125220:CDS |
| TCACAAATAGGTGACACACT+TGG | 0.624022 | 1_3:+53639887 | Msa0125220:CDS |
| CTTGTCATCATCATGGAGGT+GGG | 0.629497 | 1_3:-53638162 | None:intergenic |
| TGCACATAGCGTTCGCCACG+AGG | 0.640747 | 1_3:-53639141 | None:intergenic |
| TCCATCACACGTCCACAAGT+AGG | 0.659029 | 1_3:-53641466 | None:intergenic |
| ATAACCAACACTAGACCAAG+TGG | 0.664243 | 1_3:-53639412 | None:intergenic |
| TCAACATTGATCATTTCACA+TGG | 0.671206 | 1_3:-53641397 | None:intergenic |
| CAGATGATAACCACGCCTCG+TGG | 0.673775 | 1_3:+53639126 | Msa0125220:intron |
| TACTTGTGGACGTGTGATGG+AGG | 0.687419 | 1_3:+53641468 | Msa0125220:CDS |
| TCTGTGGAGCAGTATCATCA+CGG | 0.695053 | 1_3:-53641519 | None:intergenic |
| ACTCCACCAAATCTGTGACA+GGG | 0.697458 | 1_3:-53639353 | None:intergenic |
| CACACTTGTCATCATCATGG+AGG | 0.700312 | 1_3:-53638166 | None:intergenic |
| ATGTGCATCAAACAACAATG+TGG | 0.704575 | 1_3:+53639157 | Msa0125220:CDS |
| TCTGGTCATCGGTAAAGACG+GGG | 0.709562 | 1_3:-53640391 | None:intergenic |
| TGTCTCAAACAAGATCCACA+AGG | 0.723177 | 1_3:+53641199 | Msa0125220:CDS |
| TTATCCAATAAACAGCAACA+GGG | 0.754754 | 1_3:-53639479 | None:intergenic |
| ATGAGGTTGAAGTCTCAGTG+AGG | 0.764223 | 1_3:-53639269 | None:intergenic |
| GTGGAGCAGTATCATCACGG+TGG | 0.778746 | 1_3:-53641516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGATAAATTCAACTTT+AGG | - | chr1_3:53638065-53638084 | None:intergenic | 15.0% |
| !! | AATAAAAAATGAACATAAGA+AGG | - | chr1_3:53638245-53638264 | None:intergenic | 15.0% |
| !!! | CAAATATAAGTTAAATTTTG+AGG | - | chr1_3:53638769-53638788 | None:intergenic | 15.0% |
| !!! | ATTTGCATAATATATGATTT+TGG | + | chr1_3:53638891-53638910 | Msa0125220:intron | 15.0% |
| !!! | ATTTTTTTTGTATACATGTT+AGG | + | chr1_3:53639915-53639934 | Msa0125220:intron | 15.0% |
| !!! | AAGTTATTTTCAATCATTTT+TGG | + | chr1_3:53639943-53639962 | Msa0125220:intron | 15.0% |
| !! | AAGAAATCTATAATATCTTT+AGG | - | chr1_3:53640054-53640073 | None:intergenic | 15.0% |
| !!! | AATGTTGATAATAATATCAA+TGG | + | chr1_3:53641412-53641431 | Msa0125220:CDS | 15.0% |
| !! | TTATCAGTGAATAAGTAAAT+TGG | - | chr1_3:53638039-53638058 | None:intergenic | 20.0% |
| !! | ATATAATTCAGTGTAATCAT+AGG | + | chr1_3:53638368-53638387 | Msa0125220:intron | 20.0% |
| !! | TAACTAATAAACATATGTAG+TGG | - | chr1_3:53638563-53638582 | None:intergenic | 20.0% |
| !! | TTGATAAAAACAAGAGAAAA+CGG | + | chr1_3:53638734-53638753 | Msa0125220:intron | 20.0% |
| !! | TGTCTTACATTTATAACTTA+AGG | - | chr1_3:53639584-53639603 | None:intergenic | 20.0% |
| !! | AGAACGAAAAATAAACTTAA+CGG | - | chr1_3:53639614-53639633 | None:intergenic | 20.0% |
| !!! | ATCTATAATATCTTTAGGAT+TGG | - | chr1_3:53640049-53640068 | None:intergenic | 20.0% |
| !! | ATTCTTCAAAGAATCAAATT+TGG | - | chr1_3:53640420-53640439 | None:intergenic | 20.0% |
| ! | ATCAATATGTCATTATCCAA+TGG | + | chr1_3:53638077-53638096 | Msa0125220:exon | 25.0% |
| ! | TAATGATTTCCTATAAAGCA+CGG | + | chr1_3:53638296-53638315 | Msa0125220:intron | 25.0% |
| ! | ATATAAGTACATTGAGAAAG+TGG | - | chr1_3:53638510-53638529 | None:intergenic | 25.0% |
| !!! | TGATTTTAAGTATAAGTCTG+CGG | - | chr1_3:53638620-53638639 | None:intergenic | 25.0% |
| !! | TGTAGGTTTGAAATAAACAA+GGG | - | chr1_3:53638796-53638815 | None:intergenic | 25.0% |
| ! | TTGTCAGGTTAATTATTTGA+TGG | + | chr1_3:53639015-53639034 | Msa0125220:intron | 25.0% |
| ! | TATAACTTAAGGAACCAAAA+TGG | - | chr1_3:53639573-53639592 | None:intergenic | 25.0% |
| ! | GTTATAAATGTAAGACACTT+AGG | + | chr1_3:53639587-53639606 | Msa0125220:intron | 25.0% |
| !!! | TTTTTTGTTGTTCTTGTTTC+AGG | + | chr1_3:53639786-53639805 | Msa0125220:intron | 25.0% |
| !!! | TTTTTGTTGTTCTTGTTTCA+GGG | + | chr1_3:53639787-53639806 | Msa0125220:intron | 25.0% |
| !!! | TTTTGTTGATTCTAAGTTGA+AGG | + | chr1_3:53639844-53639863 | Msa0125220:CDS | 25.0% |
| ! | AAACTAATCGAATCACAAAT+AGG | + | chr1_3:53639875-53639894 | Msa0125220:CDS | 25.0% |
| ! | GAATCTGCAACAAATATATA+TGG | - | chr1_3:53639991-53640010 | None:intergenic | 25.0% |
| ! | GATAATCTCCTAATATATGA+TGG | + | chr1_3:53640099-53640118 | Msa0125220:CDS | 25.0% |
| ! | GTTTGATACATGAAAACAAA+AGG | - | chr1_3:53640205-53640224 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCATGTATCAAAC+AGG | + | chr1_3:53640205-53640224 | Msa0125220:intron | 25.0% |
| ! | CATTCATTATTTCACCTAAA+GGG | - | chr1_3:53640547-53640566 | None:intergenic | 25.0% |
| ! | TCATTCATTATTTCACCTAA+AGG | - | chr1_3:53640548-53640567 | None:intergenic | 25.0% |
| !! | AATAATGAATGATGATGCAA+TGG | + | chr1_3:53640556-53640575 | Msa0125220:CDS | 25.0% |
| !!! | AATGGACTTGATTTTTCAAT+GGG | + | chr1_3:53640574-53640593 | Msa0125220:CDS | 25.0% |
| ! | GTTATGATCTTACTCAAAAA+TGG | + | chr1_3:53640630-53640649 | Msa0125220:CDS | 25.0% |
| ! | ATAATAGAACACTATCACTT+AGG | + | chr1_3:53641061-53641080 | Msa0125220:CDS | 25.0% |
| !!! | CAAAGAGTATTATGATACTA+AGG | + | chr1_3:53641351-53641370 | Msa0125220:CDS | 25.0% |
| TTCTGTCCAATGTTATACTT+AGG | + | chr1_3:53638210-53638229 | Msa0125220:CDS | 30.0% | |
| TCTGTCCAATGTTATACTTA+GGG | + | chr1_3:53638211-53638230 | Msa0125220:CDS | 30.0% | |
| GTTTACCCTAAGTATAACAT+TGG | - | chr1_3:53638219-53638238 | None:intergenic | 30.0% | |
| !! | GATTTTAAGTATAAGTCTGC+GGG | - | chr1_3:53638619-53638638 | None:intergenic | 30.0% |
| !! | ATCGTAAACTTCTACTTTTG+GGG | - | chr1_3:53638669-53638688 | None:intergenic | 30.0% |
| !! | GATCGTAAACTTCTACTTTT+GGG | - | chr1_3:53638670-53638689 | None:intergenic | 30.0% |
| TCTTAGACATTACGACAATA+AGG | - | chr1_3:53638692-53638711 | None:intergenic | 30.0% | |
| TTATCAAACTGACATCGATA+AGG | - | chr1_3:53638721-53638740 | None:intergenic | 30.0% | |
| ! | GTGTAGGTTTGAAATAAACA+AGG | - | chr1_3:53638797-53638816 | None:intergenic | 30.0% |
| TGTTTATTTCAAACCTACAC+CGG | + | chr1_3:53638797-53638816 | Msa0125220:intron | 30.0% | |
| !! | TGGAGCACTAACATTTTTAT+TGG | + | chr1_3:53638911-53638930 | Msa0125220:intron | 30.0% |
| TTATCCAATAAACAGCAACA+GGG | - | chr1_3:53639482-53639501 | None:intergenic | 30.0% | |
| ATTATCCAATAAACAGCAAC+AGG | - | chr1_3:53639483-53639502 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTTCGTTCCATTT+TGG | + | chr1_3:53639556-53639575 | Msa0125220:intron | 30.0% |
| !!! | AGTACTAACCGTTTTGTTTT+TGG | - | chr1_3:53640130-53640149 | None:intergenic | 30.0% |
| ! | AAGAGGATTTCAAGATTTTG+TGG | + | chr1_3:53640366-53640385 | Msa0125220:CDS | 30.0% |
| ! | AAGAATCAAATTTGGTCTTC+TGG | - | chr1_3:53640412-53640431 | None:intergenic | 30.0% |
| ! | TAAGATCAGATTTTATGCAG+TGG | + | chr1_3:53640439-53640458 | Msa0125220:CDS | 30.0% |
| !!! | TAAGAGAGCATTTGAACTTT+TGG | + | chr1_3:53640495-53640514 | Msa0125220:CDS | 30.0% |
| !!! | AAGAGAGCATTTGAACTTTT+GGG | + | chr1_3:53640496-53640515 | Msa0125220:CDS | 30.0% |
| !! | CAATGGACTTGATTTTTCAA+TGG | + | chr1_3:53640573-53640592 | Msa0125220:CDS | 30.0% |
| !! | ATGGACTTGATTTTTCAATG+GGG | + | chr1_3:53640575-53640594 | Msa0125220:CDS | 30.0% |
| ! | AACCATCTTGTTTCCTAAAA+GGG | - | chr1_3:53640613-53640632 | None:intergenic | 30.0% |
| ! | TAACCATCTTGTTTCCTAAA+AGG | - | chr1_3:53640614-53640633 | None:intergenic | 30.0% |
| ATCTTACTCAAAAATGGAAG+TGG | + | chr1_3:53640636-53640655 | Msa0125220:CDS | 30.0% | |
| ! | TCAAAAATGGAAGTGGTTTT+GGG | + | chr1_3:53640643-53640662 | Msa0125220:CDS | 30.0% |
| GACAGATACATATTCATCTA+TGG | + | chr1_3:53640953-53640972 | Msa0125220:intron | 30.0% | |
| AGATACATATTCATCTATGG+AGG | + | chr1_3:53640956-53640975 | Msa0125220:intron | 30.0% | |
| !!! | TTTTGTTTTCTCCAATGCTA+AGG | - | chr1_3:53641011-53641030 | None:intergenic | 30.0% |
| ! | TAGCATTGGAGAAAACAAAA+AGG | + | chr1_3:53641011-53641030 | Msa0125220:intron | 30.0% |
| ! | AAAGGCATGAAACTATCTTA+AGG | + | chr1_3:53641029-53641048 | Msa0125220:CDS | 30.0% |
| AAGGCATGAAACTATCTTAA+GGG | + | chr1_3:53641030-53641049 | Msa0125220:CDS | 30.0% | |
| AAAAACGAGGAACAATCTTA+GGG | - | chr1_3:53641096-53641115 | None:intergenic | 30.0% | |
| TCTATTTCAATCCAAAAACG+AGG | - | chr1_3:53641109-53641128 | None:intergenic | 30.0% | |
| ! | GCTACAATGTTAAGCTTTTA+GGG | + | chr1_3:53641242-53641261 | Msa0125220:CDS | 30.0% |
| TCAACATTGATCATTTCACA+TGG | - | chr1_3:53641400-53641419 | None:intergenic | 30.0% | |
| TATCACACTTGTCATCATCA+TGG | - | chr1_3:53638172-53638191 | None:intergenic | 35.0% | |
| GTATAACATTGGACAGAATG+TGG | - | chr1_3:53638208-53638227 | None:intergenic | 35.0% | |
| ATCTGATATCCGTGCTTTAT+AGG | - | chr1_3:53638308-53638327 | None:intergenic | 35.0% | |
| CACGGATATCAGATATGATA+CGG | + | chr1_3:53638314-53638333 | Msa0125220:intron | 35.0% | |
| TATGAAACACAGACAATCCT+CGG | - | chr1_3:53638445-53638464 | None:intergenic | 35.0% | |
| !! | CTACTTTTGGGGATTAAAGT+TGG | - | chr1_3:53638658-53638677 | None:intergenic | 35.0% |
| ! | GGATCGTAAACTTCTACTTT+TGG | - | chr1_3:53638671-53638690 | None:intergenic | 35.0% |
| GTTTATGTTCCTTTGTCCTT+GGG | - | chr1_3:53638842-53638861 | None:intergenic | 35.0% | |
| AGTTTATGTTCCTTTGTCCT+TGG | - | chr1_3:53638843-53638862 | None:intergenic | 35.0% | |
| AGGAACATAAACTCTTACTG+TGG | + | chr1_3:53638850-53638869 | Msa0125220:intron | 35.0% | |
| TATGCAAATGCTAAGTTCTG+AGG | - | chr1_3:53638880-53638899 | None:intergenic | 35.0% | |
| TACCAAATGAATCACAGACA+AGG | + | chr1_3:53638936-53638955 | Msa0125220:intron | 35.0% | |
| !! | ATCTGTTGATAATGTCAGAG+AGG | - | chr1_3:53639111-53639130 | None:intergenic | 35.0% |
| ATGTGCATCAAACAACAATG+TGG | + | chr1_3:53639157-53639176 | Msa0125220:CDS | 35.0% | |
| AACAGCTGAAAACCTATTCA+TGG | + | chr1_3:53639187-53639206 | Msa0125220:CDS | 35.0% | |
| ACAGCTGAAAACCTATTCAT+GGG | + | chr1_3:53639188-53639207 | Msa0125220:CDS | 35.0% | |
| !! | GTTAACAAGTTGATCTGATG+AGG | - | chr1_3:53639289-53639308 | None:intergenic | 35.0% |
| !! | AGATTTGGTGGAGTTGATAA+TGG | + | chr1_3:53639362-53639381 | Msa0125220:CDS | 35.0% |
| !! | TTATCCCTGTTGCTGTTTAT+TGG | + | chr1_3:53639475-53639494 | Msa0125220:CDS | 35.0% |
| !!! | ACTAACCGTTTTGTTTTTGG+TGG | - | chr1_3:53640127-53640146 | None:intergenic | 35.0% |
| AATCCACAAGAAGTGATAAG+AGG | + | chr1_3:53640335-53640354 | Msa0125220:CDS | 35.0% | |
| TAACCTCTTATCACTTCTTG+TGG | - | chr1_3:53640341-53640360 | None:intergenic | 35.0% | |
| GATAAGAGGTTACAAGAAAG+AGG | + | chr1_3:53640349-53640368 | Msa0125220:CDS | 35.0% | |
| ! | AAATTTGGTCTTCTGGTCAT+CGG | - | chr1_3:53640405-53640424 | None:intergenic | 35.0% |
| !! | TGGACTTGATTTTTCAATGG+GGG | + | chr1_3:53640576-53640595 | Msa0125220:CDS | 35.0% |
| ! | CTCAAAAATGGAAGTGGTTT+TGG | + | chr1_3:53640642-53640661 | Msa0125220:CDS | 35.0% |
| GTTACAAAGAGAGTGAATCT+TGG | + | chr1_3:53640668-53640687 | Msa0125220:CDS | 35.0% | |
| ATGGAGGTAGTGACAAAAAA+TGG | + | chr1_3:53640972-53640991 | Msa0125220:intron | 35.0% | |
| CAAAAACGAGGAACAATCTT+AGG | - | chr1_3:53641097-53641116 | None:intergenic | 35.0% | |
| ! | CTAAGATTGTTCCTCGTTTT+TGG | + | chr1_3:53641095-53641114 | Msa0125220:CDS | 35.0% |
| AAGCTTAACATTGTAGCCTT+TGG | - | chr1_3:53641239-53641258 | None:intergenic | 35.0% | |
| ! | GGCTACAATGTTAAGCTTTT+AGG | + | chr1_3:53641241-53641260 | Msa0125220:CDS | 35.0% |
| !!! | AATGTTAAGCTTTTAGGGCA+TGG | + | chr1_3:53641247-53641266 | Msa0125220:CDS | 35.0% |
| CCATATATCAAAATCAGCCA+AGG | - | chr1_3:53641290-53641309 | None:intergenic | 35.0% | |
| !! | CCTTGGCTGATTTTGATATA+TGG | + | chr1_3:53641287-53641306 | Msa0125220:CDS | 35.0% |
| ! | GATAGAGTGCTACAAAAAGA+AGG | + | chr1_3:53641313-53641332 | Msa0125220:CDS | 35.0% |
| TCATCCAGATCAAATGGCTT+TGG | - | chr1_3:53638113-53638132 | None:intergenic | 40.0% | |
| TGAGACTCATCCAGATCAAA+TGG | - | chr1_3:53638119-53638138 | None:intergenic | 40.0% | |
| GGGTCAGATAAACTTTATCC+AGG | - | chr1_3:53638145-53638164 | None:intergenic | 40.0% | |
| CATTGGACAGAATGTGGAAA+AGG | - | chr1_3:53638202-53638221 | None:intergenic | 40.0% | |
| ATATGATACGGACACTGACA+CGG | + | chr1_3:53638326-53638345 | Msa0125220:intron | 40.0% | |
| ! | TGTAATCATAGGTGTCGTGT+TGG | + | chr1_3:53638379-53638398 | Msa0125220:intron | 40.0% |
| ! | AAGTATAAGTCTGCGGGTTA+AGG | - | chr1_3:53638613-53638632 | None:intergenic | 40.0% |
| ! | AGCCTTGTCTGTGATTCATT+TGG | - | chr1_3:53638941-53638960 | None:intergenic | 40.0% |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1_3:53639000-53639019 | Msa0125220:CDS | 40.0% |
| ! | TGCTTTTGCATCCCATGAAT+AGG | - | chr1_3:53639202-53639221 | None:intergenic | 40.0% |
| TTCCAAAGTGAAAGCAGCTA+GGG | - | chr1_3:53639232-53639251 | None:intergenic | 40.0% | |
| ATTCCAAAGTGAAAGCAGCT+AGG | - | chr1_3:53639233-53639252 | None:intergenic | 40.0% | |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_3:53639234-53639253 | Msa0125220:CDS | 40.0% |
| TGCTTCTGCATATTCATGAG+TGG | + | chr1_3:53639388-53639407 | Msa0125220:CDS | 40.0% | |
| GCTTCTGCATATTCATGAGT+GGG | + | chr1_3:53639389-53639408 | Msa0125220:CDS | 40.0% | |
| ATAACCAACACTAGACCAAG+TGG | - | chr1_3:53639415-53639434 | None:intergenic | 40.0% | |
| TGCAATGCATCAGACAAAGA+AGG | - | chr1_3:53639453-53639472 | None:intergenic | 40.0% | |
| TCACAAATAGGTGACACACT+TGG | + | chr1_3:53639887-53639906 | Msa0125220:CDS | 40.0% | |
| !! | TGGTGGTGCCATCATATATT+AGG | - | chr1_3:53640110-53640129 | None:intergenic | 40.0% |
| TGGCACCACCAAAAACAAAA+CGG | + | chr1_3:53640119-53640138 | Msa0125220:CDS | 40.0% | |
| TCTCATCGTCAACTTTGTTG+AGG | - | chr1_3:53640277-53640296 | None:intergenic | 40.0% | |
| TTCTATCCATGACAGATTGC+AGG | + | chr1_3:53640310-53640329 | Msa0125220:CDS | 40.0% | |
| GATTACTCTTCTGAGTTACC+TGG | + | chr1_3:53640461-53640480 | Msa0125220:CDS | 40.0% | |
| TCTCTTATGAGTCTAATGCC+AGG | - | chr1_3:53640482-53640501 | None:intergenic | 40.0% | |
| !! | CTCCCTTTTAGGAAACAAGA+TGG | + | chr1_3:53640608-53640627 | Msa0125220:CDS | 40.0% |
| GAGAGTGAATCTTGGAATAC+AGG | + | chr1_3:53640676-53640695 | Msa0125220:CDS | 40.0% | |
| TCTCACAGTCTATAGCATCT+TGG | - | chr1_3:53641153-53641172 | None:intergenic | 40.0% | |
| TGTCTCAAACAAGATCCACA+AGG | + | chr1_3:53641199-53641218 | Msa0125220:CDS | 40.0% | |
| TCAAACAAGATCCACAAGGT+TGG | + | chr1_3:53641203-53641222 | Msa0125220:CDS | 40.0% | |
| CAAACAAGATCCACAAGGTT+GGG | + | chr1_3:53641204-53641223 | Msa0125220:CDS | 40.0% | |
| CTTTGGCAGCTTAGTTCCAT+TGG | - | chr1_3:53638096-53638115 | None:intergenic | 45.0% | |
| TCTGGATGAGTCTCAAATCC+TGG | + | chr1_3:53638124-53638143 | Msa0125220:CDS | 45.0% | |
| CTTGTCATCATCATGGAGGT+GGG | - | chr1_3:53638165-53638184 | None:intergenic | 45.0% | |
| ACTTGTCATCATCATGGAGG+TGG | - | chr1_3:53638166-53638185 | None:intergenic | 45.0% | |
| CACACTTGTCATCATCATGG+AGG | - | chr1_3:53638169-53638188 | None:intergenic | 45.0% | |
| ACACAGACAATCCTCGGATT+AGG | - | chr1_3:53638439-53638458 | None:intergenic | 45.0% | |
| ! | TATAAGTCTGCGGGTTAAGG+TGG | - | chr1_3:53638610-53638629 | None:intergenic | 45.0% |
| AATGAGGCGGTAAATCGATC+CGG | - | chr1_3:53638819-53638838 | None:intergenic | 45.0% | |
| TTCCTTTGTCCTTGGGAATG+AGG | - | chr1_3:53638835-53638854 | None:intergenic | 45.0% | |
| !! | GCAAATGCTAAGTTCTGAGG+TGG | - | chr1_3:53638877-53638896 | None:intergenic | 45.0% |
| AGCTTCAGTGTGCGAAATTC+TGG | - | chr1_3:53638989-53639008 | None:intergenic | 45.0% | |
| ATGAGGTTGAAGTCTCAGTG+AGG | - | chr1_3:53639272-53639291 | None:intergenic | 45.0% | |
| ACTCCACCAAATCTGTGACA+GGG | - | chr1_3:53639356-53639375 | None:intergenic | 45.0% | |
| AACTCCACCAAATCTGTGAC+AGG | - | chr1_3:53639357-53639376 | None:intergenic | 45.0% | |
| ATATTCATGAGTGGGCCACT+TGG | + | chr1_3:53639397-53639416 | Msa0125220:CDS | 45.0% | |
| CAAATAGGTGACACACTTGG+TGG | + | chr1_3:53639890-53639909 | Msa0125220:CDS | 45.0% | |
| AAGCTTCTGATCCAACGCAA+TGG | + | chr1_3:53640075-53640094 | Msa0125220:CDS | 45.0% | |
| GGAGATTATCTCCATTGCGT+TGG | - | chr1_3:53640089-53640108 | None:intergenic | 45.0% | |
| GATTGTCCTGCAATCTGTCA+TGG | - | chr1_3:53640319-53640338 | None:intergenic | 45.0% | |
| TTCTGGTCATCGGTAAAGAC+GGG | - | chr1_3:53640395-53640414 | None:intergenic | 45.0% | |
| CTTCTGGTCATCGGTAAAGA+CGG | - | chr1_3:53640396-53640415 | None:intergenic | 45.0% | |
| ! | GGATAGATGCACTCCCTTTT+AGG | + | chr1_3:53640597-53640616 | Msa0125220:CDS | 45.0% |
| CCAATGCTAAGGTGAAGTCT+TGG | - | chr1_3:53641000-53641019 | None:intergenic | 45.0% | |
| CCAAGACTTCACCTTAGCAT+TGG | + | chr1_3:53640997-53641016 | Msa0125220:intron | 45.0% | |
| GTGAGAATAACCCAACCTTG+TGG | - | chr1_3:53641217-53641236 | None:intergenic | 45.0% | |
| GGTTGGGTTATTCTCACCAA+AGG | + | chr1_3:53641220-53641239 | Msa0125220:CDS | 45.0% | |
| TGAGCCTATGCATCAAACCT+TGG | + | chr1_3:53641270-53641289 | Msa0125220:CDS | 45.0% | |
| TCAGCCAAGGTTTGATGCAT+AGG | - | chr1_3:53641277-53641296 | None:intergenic | 45.0% | |
| TCATGCCCAAATCCTACTTG+TGG | + | chr1_3:53641454-53641473 | Msa0125220:CDS | 45.0% | |
| CACGTCCACAAGTAGGATTT+GGG | - | chr1_3:53641462-53641481 | None:intergenic | 45.0% | |
| ACACGTCCACAAGTAGGATT+TGG | - | chr1_3:53641463-53641482 | None:intergenic | 45.0% | |
| TCTGTGGAGCAGTATCATCA+CGG | - | chr1_3:53641522-53641541 | None:intergenic | 45.0% | |
| GATGATACTGCTCCACAGAA+TGG | + | chr1_3:53641523-53641542 | Msa0125220:CDS | 45.0% | |
| GCTGCCAAAGCCATTTGATC+TGG | + | chr1_3:53638106-53638125 | Msa0125220:CDS | 50.0% | |
| ! | CATAGGTGTCGTGTTGGTGT+CGG | + | chr1_3:53638385-53638404 | Msa0125220:intron | 50.0% |
| !! | TGTCTCGGTGTCAGACACAT+CGG | - | chr1_3:53638414-53638433 | None:intergenic | 50.0% |
| ! | TCCTCGGATTAGGTGTGTCT+CGG | - | chr1_3:53638429-53638448 | None:intergenic | 50.0% |
| GATTTACCGCCTCATTCCCA+AGG | + | chr1_3:53638823-53638842 | Msa0125220:intron | 50.0% | |
| CTTTGTCCTTGGGAATGAGG+CGG | - | chr1_3:53638832-53638851 | None:intergenic | 50.0% | |
| AGACAAGGCTAGCAGAAAGC+AGG | + | chr1_3:53638951-53638970 | Msa0125220:intron | 50.0% | |
| GACAAGGCTAGCAGAAAGCA+GGG | + | chr1_3:53638952-53638971 | Msa0125220:intron | 50.0% | |
| ! | AGCCCTAGCTGCTTTCACTT+TGG | + | chr1_3:53639227-53639246 | Msa0125220:CDS | 50.0% |
| CACTGTCCCTGTCACAGATT+TGG | + | chr1_3:53639347-53639366 | Msa0125220:CDS | 50.0% | |
| TGTCCCTGTCACAGATTTGG+TGG | + | chr1_3:53639350-53639369 | Msa0125220:CDS | 50.0% | |
| GCTTCCATTGTTGCTGCTAC+TGG | + | chr1_3:53639504-53639523 | Msa0125220:CDS | 50.0% | |
| GTTGCCAGTAGCAGCAACAA+TGG | - | chr1_3:53639511-53639530 | None:intergenic | 50.0% | |
| GCTGCTACTGGCAACATCAT+TGG | + | chr1_3:53639516-53639535 | Msa0125220:CDS | 50.0% | |
| TCTGGTCATCGGTAAAGACG+GGG | - | chr1_3:53640394-53640413 | None:intergenic | 50.0% | |
| TTGGGATAAGCCTATCGTCC+CGG | + | chr1_3:53640514-53640533 | Msa0125220:CDS | 50.0% | |
| TCCTACTTGTGGACGTGTGA+TGG | + | chr1_3:53641465-53641484 | Msa0125220:CDS | 50.0% | |
| TCCATCACACGTCCACAAGT+AGG | - | chr1_3:53641469-53641488 | None:intergenic | 50.0% | |
| TACTTGTGGACGTGTGATGG+AGG | + | chr1_3:53641468-53641487 | Msa0125220:CDS | 50.0% | |
| ACCGAGACACACCTAATCCG+AGG | + | chr1_3:53638425-53638444 | Msa0125220:intron | 55.0% | |
| GCGGTAAATCGATCCGGTGT+AGG | - | chr1_3:53638813-53638832 | None:intergenic | 55.0% | |
| CGCCTCATTCCCAAGGACAA+AGG | + | chr1_3:53638830-53638849 | Msa0125220:intron | 55.0% | |
| CAGATGATAACCACGCCTCG+TGG | + | chr1_3:53639126-53639145 | Msa0125220:intron | 55.0% | |
| TGGGCCACTTGGTCTAGTGT+TGG | + | chr1_3:53639408-53639427 | Msa0125220:CDS | 55.0% | |
| TAAGCCTATCGTCCCGGTGT+TGG | + | chr1_3:53640520-53640539 | Msa0125220:CDS | 55.0% | |
| AAGCCTATCGTCCCGGTGTT+GGG | + | chr1_3:53640521-53640540 | Msa0125220:CDS | 55.0% | |
| TCACCTAAAGGGCCCAACAC+CGG | - | chr1_3:53640536-53640555 | None:intergenic | 55.0% | |
| GTGGAGCAGTATCATCACGG+TGG | - | chr1_3:53641519-53641538 | None:intergenic | 55.0% | |
| AGGCTAGCAGAAAGCAGGGC+TGG | + | chr1_3:53638956-53638975 | Msa0125220:CDS | 60.0% | |
| TGCACATAGCGTTCGCCACG+AGG | - | chr1_3:53639144-53639163 | None:intergenic | 60.0% | |
| CACCTAAAGGGCCCAACACC+GGG | - | chr1_3:53640535-53640554 | None:intergenic | 60.0% | |
| ATAGCGTTCGCCACGAGGCG+TGG | - | chr1_3:53639139-53639158 | None:intergenic | 65.0% | |
| ! | GTCCCGGTGTTGGGCCCTTT+AGG | + | chr1_3:53640530-53640549 | Msa0125220:CDS | 65.0% |
| GGGCCCAACACCGGGACGAT+AGG | - | chr1_3:53640527-53640546 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53638029 | 53641555 | 53638029 | ID=Msa0125220;Name=Msa0125220 |
| chr1_3 | mRNA | 53638029 | 53641555 | 53638029 | ID=Msa0125220-mRNA-1;Parent=Msa0125220;Name=Msa0125220-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|0.66|0.71|1|1|1|7|0|625 |
| chr1_3 | exon | 53638029 | 53638232 | 53638029 | ID=Msa0125220-mRNA-1:exon:16406;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53638953 | 53639021 | 53638953 | ID=Msa0125220-mRNA-1:exon:16407;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53639129 | 53639544 | 53639129 | ID=Msa0125220-mRNA-1:exon:16408;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53639808 | 53639911 | 53639808 | ID=Msa0125220-mRNA-1:exon:16409;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53640007 | 53640140 | 53640007 | ID=Msa0125220-mRNA-1:exon:16410;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53640227 | 53640697 | 53640227 | ID=Msa0125220-mRNA-1:exon:16411;Parent=Msa0125220-mRNA-1 |
| chr1_3 | exon | 53641022 | 53641555 | 53641022 | ID=Msa0125220-mRNA-1:exon:16412;Parent=Msa0125220-mRNA-1 |
| chr1_3 | five_prime_UTR | 53638029 | 53638082 | 53638029 | ID=Msa0125220-mRNA-1:five_prime_utr;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53638083 | 53638232 | 53638083 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53638953 | 53639021 | 53638953 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53639129 | 53639544 | 53639129 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53639808 | 53639911 | 53639808 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53640007 | 53640140 | 53640007 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53640227 | 53640697 | 53640227 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| chr1_3 | CDS | 53641022 | 53641555 | 53641022 | ID=Msa0125220-mRNA-1:cds;Parent=Msa0125220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
