AlfalfaGEDB | Msa0009780

M. sativa cultivar zhongmu-4 / Msa0009780

KEGG: K01057
GO: GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057
PFAM: PF01182.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009780	XP_013466360.1	96.855	318	10	0	1	318	1	318	0.0	635

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009780	sp\|Q69NG5\|6PGL4_ORYSJ	62.810	242	87	3	78	316	80	321	9.20e-103	307

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009780	Msa0015150	0.859020	5.518474e-63	-8.615850e-47
Msa0009780	Msa0029960	0.827743	1.322088e-54	-8.615850e-47
Msa0009780	Msa0050530	0.803379	3.585750e-49	-8.615850e-47
Msa0009780	Msa0064120	0.879179	1.539176e-69	-8.615850e-47
Msa0009780	Msa0069350	0.845506	3.892483e-59	-8.615850e-47
Msa0009780	Msa0071840	0.800176	1.629169e-48	-8.615850e-47
Msa0009780	Msa0100600	0.807220	5.620817e-50	-8.615850e-47
Msa0009780	Msa0100890	0.813560	2.406752e-51	-8.615850e-47
Msa0009780	Msa0104570	0.940258	3.174463e-100	-8.615850e-47
Msa0009780	Msa0108880	0.814760	1.307149e-51	-8.615850e-47
Msa0009780	Msa0125220	0.800176	1.629627e-48	-8.615850e-47
Msa0009780	Msa0155180	0.891394	4.136792e-74	-8.615850e-47
Msa0009780	Msa0156050	0.802745	4.848203e-49	-8.615850e-47
Msa0009780	Msa0156090	0.810693	1.015550e-50	-8.615850e-47
Msa0009780	Msa0241040	0.824322	8.594231e-54	-8.615850e-47
Msa0009780	Msa0278840	0.818170	2.254440e-52	-8.615850e-47
Msa0009780	Msa0281540	0.807074	6.037128e-50	-8.615850e-47
Msa0009780	Msa0420430	0.823225	1.552843e-53	-8.615850e-47
Msa0009780	Msa0427820	0.821818	3.298774e-53	-8.615850e-47
Msa0009780	Msa0466520	0.808792	2.602084e-50	-8.615850e-47
Msa0009780	Msa0474060	0.813698	2.243917e-51	-8.615850e-47
Msa0009780	Msa0482080	0.801459	8.917258e-49	-8.615850e-47
Msa0009780	Msa0498610	0.805001	1.648107e-49	-8.615850e-47
Msa0009780	Msa0518680	0.824445	8.041079e-54	-8.615850e-47
Msa0009780	Msa0527850	0.800867	1.177963e-48	-8.615850e-47
Msa0009780	Msa0541740	0.833275	5.856891e-56	-8.615850e-47
Msa0009780	Msa0554300	0.810346	1.206549e-50	-8.615850e-47
Msa0009780	Msa0557850	0.816311	5.904771e-52	-8.615850e-47
Msa0009780	Msa0564980	0.816348	5.791126e-52	-8.615850e-47
Msa0009780	Msa0579780	0.835033	2.123921e-56	-8.615850e-47
Msa0009780	Msa0612520	0.813889	2.036788e-51	-8.615850e-47
Msa0009780	Msa0616230	0.817212	3.706493e-52	-8.615850e-47
Msa0009780	Msa0648760	0.805574	1.250091e-49	-8.615850e-47
Msa0009780	Msa0649840	0.826060	3.336831e-54	-8.615850e-47
Msa0009780	Msa0653160	0.855746	5.131181e-62	-8.615850e-47
Msa0009780	Msa0655710	0.820549	6.468388e-53	-8.615850e-47
Msa0009780	Msa0657210	0.839525	1.504619e-57	-8.615850e-47
Msa0009780	Msa0688620	0.804268	2.343220e-49	-8.615850e-47
Msa0009780	Msa0695560	0.848282	6.769070e-60	-8.615850e-47
Msa0009780	Msa0699560	0.808879	2.492730e-50	-8.615850e-47
Msa0009780	Msa0701250	0.831190	1.920740e-55	-8.615850e-47
Msa0009780	Msa0741970	0.822180	2.718826e-53	-8.615850e-47
Msa0009780	Msa0749190	0.803492	3.397086e-49	-8.615850e-47
Msa0009780	Msa0750520	0.806715	7.191528e-50	-8.615850e-47
Msa0009780	Msa0764770	0.807873	4.086283e-50	-8.615850e-47
Msa0009780	Msa0786230	0.803486	3.406242e-49	-8.615850e-47
Msa0009780	Msa0823170	0.822194	2.698551e-53	-8.615850e-47
Msa0009780	Msa1055310	0.817234	3.664810e-52	-8.615850e-47
Msa0009780	Msa1071410	0.804721	1.885944e-49	-8.615850e-47
Msa0009780	Msa1144990	0.801200	1.007289e-48	-8.615850e-47
Msa0009780	Msa1183900	0.809477	1.855891e-50	-8.615850e-47
Msa0009780	Msa1209320	0.811547	6.629433e-51	-8.615850e-47
Msa0009780	Msa1209720	0.813424	2.578383e-51	-8.615850e-47
Msa0009780	Msa1227760	0.813731	2.206116e-51	-8.615850e-47
Msa0009780	Msa1267930	0.831822	1.342409e-55	-8.615850e-47
Msa0009780	Msa1295670	0.809767	1.607588e-50	-8.615850e-47
Msa0009780	Msa1308860	0.839898	1.203191e-57	-8.615850e-47
Msa0009780	Msa1360930	0.821686	3.538861e-53	-8.615850e-47
Msa0009780	Msa1367840	0.802508	5.425912e-49	-8.615850e-47
Msa0009780	Msa1369010	0.800160	1.641715e-48	-8.615850e-47
Msa0009780	Msa1381800	0.804991	1.655560e-49	-8.615850e-47
Msa0009780	Msa1406720	0.802168	6.374992e-49	-8.615850e-47
Msa0009780	Msa1429860	0.801130	1.041079e-48	-8.615850e-47
Msa0009780	Msa1443210	0.806841	6.762530e-50	-8.615850e-47
Msa0009780	Msa1465040	0.811338	7.358044e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009780	MtrunA17_Chr1g0158821	96.855	318	10	0	1	318	1	318	0.0	635
Msa0009780	MtrunA17_Chr1g0158811	63.158	323	110	6	1	318	1	319	1.54e-138	395
Msa0009780	MtrunA17_Chr3g0127471	59.425	313	120	5	7	316	1	309	6.89e-121	349
Msa0009780	MtrunA17_Chr5g0419391	47.934	242	123	3	78	316	18	259	2.73e-77	237

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009780	AT5G24400.1	50.654	306	139	4	13	316	30	325	4.72e-102	302
Msa0009780	AT3G49360.1	51.639	244	110	3	78	316	11	251	6.21e-83	251
Msa0009780	AT5G24420.1	49.213	254	122	3	68	316	1	252	6.84e-79	241
Msa0009780	AT1G13700.2	47.541	244	123	3	80	318	20	263	5.00e-78	239
Msa0009780	AT1G13700.3	47.541	244	123	3	80	318	20	263	5.00e-78	239
Msa0009780	AT1G13700.1	47.541	244	123	3	80	318	20	263	5.00e-78	239
Msa0009780	AT5G24410.1	51.020	245	110	4	78	316	17	257	2.08e-77	237

Find 81 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATCTTATGCTATTAGATA+TGG	0.219132	1_1:+14635566	Msa0009780:CDS
AATAGCATAAGATCAAATTT+TGG	0.228100	1_1:-14635558	None:intergenic
TGCTTGTGACCAAACGTCTT+AGG	0.231392	1_1:-14635503	None:intergenic
CATGTAGCTTCTTTGTTTCC+AGG	0.258573	1_1:+14635600	Msa0009780:CDS
GGAGAGGTCAGCAACATATT+TGG	0.269169	1_1:-14634574	None:intergenic
GGAGCATCTTGCTGTGTCTT+TGG	0.286314	1_1:+14634551	Msa0009780:CDS
CCACCAACATGAATTCTCTT+AGG	0.287083	1_1:-14634477	None:intergenic
AATATTGCTATGGTTGTTAC+TGG	0.299118	1_1:+14635732	Msa0009780:CDS
TTGCTATCAACGTGAGTCTT+TGG	0.304718	1_1:-14635081	None:intergenic
ATCCTCTCCGGCGGCGGTTT+AGG	0.316898	1_1:-14635675	None:intergenic
CTGGACCAGTCAAGTATCTA+AGG	0.349390	1_1:+14634643	Msa0009780:CDS
TGGACAAGGGTGCTGCTTCA+AGG	0.364070	1_1:+14635859	Msa0009780:CDS
GTCATTGGTGTCACCTCAAT+TGG	0.367130	1_1:+14634404	Msa0009780:CDS
ATAGGAAGCATATTATCATT+AGG	0.382365	1_1:-14635798	None:intergenic
TTTATTGAGCAAAATATGTA+TGG	0.384635	1_1:+14636297	Msa0009780:three_prime_UTR
AACCATTTGATATCTCCTTC+AGG	0.389182	1_1:-14635834	None:intergenic
AGGAGATATCAAATGGTTCT+TGG	0.390569	1_1:+14635839	Msa0009780:CDS
CTATGCTTCTTGTATTGTCT+TGG	0.394388	1_1:-14636203	None:intergenic
ATATCAAAATCATCCCTAAC+TGG	0.394516	1_1:+14635531	Msa0009780:CDS
GATCTTATGCTATTAGATAT+GGG	0.400581	1_1:+14635567	Msa0009780:CDS
GTCAAAATAAAGCAATATGA+TGG	0.418851	1_1:+14636116	Msa0009780:three_prime_UTR
GCTTGTGACCAAACGTCTTA+GGG	0.422653	1_1:-14635502	None:intergenic
TGAGACAACCCTAAGACGTT+TGG	0.427530	1_1:+14635494	Msa0009780:CDS
GAAGTCACATTGTGTCTTAG+AGG	0.429893	1_1:-14634447	None:intergenic
GCTATGGTTGTTACTGGTGC+TGG	0.441325	1_1:+14635738	Msa0009780:CDS
AATTCACAATTTCAGGAAGC+TGG	0.444188	1_1:+14634987	Msa0009780:intron
TTGTGTTTGTGACTTATGTT+TGG	0.447295	1_1:-14634370	None:intergenic
GTTTACTCTGCACTTGAGAA+AGG	0.447789	1_1:+14635774	Msa0009780:CDS
CAATCGATAGTGTCACAATA+TGG	0.447946	1_1:-14635018	None:intergenic
CATTGTTTCTAACTAATCAA+TGG	0.450887	1_1:+14634296	Msa0009780:exon
TGCTACTTCAAATATTGCTA+TGG	0.455962	1_1:+14635722	Msa0009780:CDS
TTGCTCGGGTCGAAATTACT+TGG	0.460855	1_1:-14635901	None:intergenic
ACAATCATCAACCATGTCAT+TGG	0.469484	1_1:+14634389	Msa0009780:CDS
TTGGAATGCAACATGCTTTG+TGG	0.479757	1_1:-14634351	None:intergenic
TGCTGCTCCATCAGCTGGTA+GGG	0.490513	1_1:-14635463	None:intergenic
ATGTAGCTTCTTTGTTTCCA+GGG	0.494234	1_1:+14635601	Msa0009780:CDS
AAAGAAGCTACATGTCCATC+AGG	0.494933	1_1:-14635591	None:intergenic
AAAGTAATCCTCTCCGGCGG+CGG	0.497561	1_1:-14635681	None:intergenic
TCATTCACTGCAGGGTACCC+TGG	0.499722	1_1:-14635618	None:intergenic
CCTAAGAGAATTCATGTTGG+TGG	0.500842	1_1:+14634477	Msa0009780:CDS
TAATATGCTTCCTATTCAAA+AGG	0.503362	1_1:+14635806	Msa0009780:CDS
CTTAGATACTTGACTGGTCC+AGG	0.507778	1_1:-14634642	None:intergenic
ACATCTGCTGCTCCATCAGC+TGG	0.514811	1_1:-14635468	None:intergenic
TCAATTGTGTTCACATTGAG+TGG	0.517319	1_1:-14635435	None:intergenic
AAGCAATATGATGGGACTGC+TGG	0.518393	1_1:+14636125	Msa0009780:three_prime_UTR
GAGAATTCATGTTGGTGGCT+TGG	0.523036	1_1:+14634482	Msa0009780:CDS
CTGCTGCTCCATCAGCTGGT+AGG	0.523186	1_1:-14635464	None:intergenic
TCATTGGTGTCACCTCAATT+GGG	0.523821	1_1:+14634405	Msa0009780:CDS
CGTTAGAATGAATGTTGCTC+GGG	0.526852	1_1:-14635915	None:intergenic
TTTGAAGTAGCATTAATCAC+TGG	0.530984	1_1:-14635711	None:intergenic
CTATTAGATATGGGACCTGA+TGG	0.532418	1_1:+14635576	Msa0009780:CDS
CAATTGTGTTCACATTGAGT+GGG	0.534779	1_1:-14635434	None:intergenic
ATCCTGAAGGAGATATCAAA+TGG	0.537202	1_1:+14635832	Msa0009780:CDS
TATCAAATGGTTCTTGGACA+AGG	0.539582	1_1:+14635845	Msa0009780:CDS
TGCTTTGTGGAGTGCATGAA+AGG	0.542015	1_1:-14634338	None:intergenic
CAATACCTTAGATACTTGAC+TGG	0.543528	1_1:-14634648	None:intergenic
GATGATTCCCTACCAGCTGA+TGG	0.545667	1_1:+14635456	Msa0009780:CDS
TCAAAATAAAGCAATATGAT+GGG	0.552866	1_1:+14636117	Msa0009780:three_prime_UTR
ACGTTAGAATGAATGTTGCT+CGG	0.555026	1_1:-14635916	None:intergenic
TCATGTTGGTGGCTTGGTGA+AGG	0.564204	1_1:+14634488	Msa0009780:CDS
AAGTCACATTGTGTCTTAGA+GGG	0.566952	1_1:-14634446	None:intergenic
TTTCAGTCTCATTCACTGCA+GGG	0.571958	1_1:-14635626	None:intergenic
AATGTAAAAGTAATCCTCTC+CGG	0.574221	1_1:-14635687	None:intergenic
ATCAAATGGTTCTTGGACAA+GGG	0.578434	1_1:+14635846	Msa0009780:CDS
ATTCAAAAGGTGAATCCTGA+AGG	0.582947	1_1:+14635819	Msa0009780:CDS
CACCTAAACCGCCGCCGGAG+AGG	0.588803	1_1:+14635673	Msa0009780:CDS
TAACGATAGCTTCATCTCCA+AGG	0.599323	1_1:+14635116	Msa0009780:CDS
CATATTGTGACACTATCGAT+TGG	0.601292	1_1:+14635019	Msa0009780:CDS
ACACTATCGATTGGTCTAAG+TGG	0.610653	1_1:+14635028	Msa0009780:CDS
AATTGTGTTCACATTGAGTG+GGG	0.620392	1_1:-14635433	None:intergenic
GCTTTGTGGAGTGCATGAAA+GGG	0.623902	1_1:-14634337	None:intergenic
AAACCTAAGAGAATTCATGT+TGG	0.624267	1_1:+14634474	Msa0009780:CDS
GAATGCACCTAAACCGCCGC+CGG	0.626616	1_1:+14635668	Msa0009780:CDS
GGATGTGCATGTGCTAAGCA+AGG	0.627699	1_1:+14634530	Msa0009780:CDS
ATTGTGTTCACATTGAGTGG+GGG	0.652455	1_1:-14635432	None:intergenic
TCGATAGTGTCACAATATGG+TGG	0.659952	1_1:-14635015	None:intergenic
GTAAAAGTAATCCTCTCCGG+CGG	0.709915	1_1:-14635684	None:intergenic
GGCATCAATGAATAACAACA+AGG	0.718422	1_1:+14634509	Msa0009780:CDS
TTGAGGTGACACCAATGACA+TGG	0.719081	1_1:-14634400	None:intergenic
TTATCGAGTGAAATTCACGC+AGG	0.730107	1_1:-14636024	None:intergenic
TGGTCCAGGAGACAAAACGA+CGG	0.782788	1_1:-14634628	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTATTTTTCTACTAAAA+AGG	-	chr1_1:14634881-14634900	None:intergenic	10.0%
!!!	TTTTTAGTAGAAAAATAAAA+TGG	+	chr1_1:14634880-14634899	Msa0009780:intron	10.0%
!!	TGTATAGATATTATTATTAA+AGG	+	chr1_1:14635268-14635287	Msa0009780:intron	10.0%
!!!	ATTTTATTTTTCTACTAAAA+AGG	-	chr1_1:14634881-14634900	None:intergenic	10.0%
!!!	TTTTTAGTAGAAAAATAAAA+TGG	+	chr1_1:14634880-14634899	Msa0009780:intron	10.0%
!!	TGTATAGATATTATTATTAA+AGG	+	chr1_1:14635268-14635287	Msa0009780:intron	10.0%
!!	ATTCTCAAAGTTAATTATTT+GGG	+	chr1_1:14634942-14634961	Msa0009780:intron	15.0%
!!	TTAAAGGTTAATTAAGTAAA+TGG	+	chr1_1:14635284-14635303	Msa0009780:intron	15.0%
!!!	TTTTTCTTTTTGAATGTAAA+TGG	+	chr1_1:14636240-14636259	Msa0009780:three_prime_UTR	15.0%
!!	ATTCTCAAAGTTAATTATTT+GGG	+	chr1_1:14634942-14634961	Msa0009780:intron	15.0%
!!	TTAAAGGTTAATTAAGTAAA+TGG	+	chr1_1:14635284-14635303	Msa0009780:intron	15.0%
!!!	TTTTTCTTTTTGAATGTAAA+TGG	+	chr1_1:14636240-14636259	Msa0009780:three_prime_UTR	15.0%
!!!	TTTTTAAAGAGTAATATGCT+AGG	-	chr1_1:14634686-14634705	None:intergenic	20.0%
!!!	AGCATATTACTCTTTAAAAA+TGG	+	chr1_1:14634686-14634705	Msa0009780:intron	20.0%
!!	GATTCTCAAAGTTAATTATT+TGG	+	chr1_1:14634941-14634960	Msa0009780:intron	20.0%
!!	AATGAAAATCTAGATATTTC+CGG	-	chr1_1:14635313-14635332	None:intergenic	20.0%
!!!	ATAGCATAAGATCAAATTTT+GGG	-	chr1_1:14635560-14635579	None:intergenic	20.0%
!!!	AATAGCATAAGATCAAATTT+TGG	-	chr1_1:14635561-14635580	None:intergenic	20.0%
!!	TCAAAATAAAGCAATATGAT+GGG	+	chr1_1:14636117-14636136	Msa0009780:three_prime_UTR	20.0%
!!	TTTATTGAGCAAAATATGTA+TGG	+	chr1_1:14636297-14636316	Msa0009780:three_prime_UTR	20.0%
!!!	TTTTTAAAGAGTAATATGCT+AGG	-	chr1_1:14634686-14634705	None:intergenic	20.0%
!!!	AGCATATTACTCTTTAAAAA+TGG	+	chr1_1:14634686-14634705	Msa0009780:intron	20.0%
!!	GATTCTCAAAGTTAATTATT+TGG	+	chr1_1:14634941-14634960	Msa0009780:intron	20.0%
!!	AATGAAAATCTAGATATTTC+CGG	-	chr1_1:14635313-14635332	None:intergenic	20.0%
!!!	ATAGCATAAGATCAAATTTT+GGG	-	chr1_1:14635560-14635579	None:intergenic	20.0%
!!!	AATAGCATAAGATCAAATTT+TGG	-	chr1_1:14635561-14635580	None:intergenic	20.0%
!!	TCAAAATAAAGCAATATGAT+GGG	+	chr1_1:14636117-14636136	Msa0009780:three_prime_UTR	20.0%
!!	TTTATTGAGCAAAATATGTA+TGG	+	chr1_1:14636297-14636316	Msa0009780:three_prime_UTR	20.0%
!!!	CATTGTTTCTAACTAATCAA+TGG	+	chr1_1:14634296-14634315	Msa0009780:exon	25.0%
!!	CTTCTCTCTAATGTATTTTT+CGG	-	chr1_1:14634598-14634617	None:intergenic	25.0%
!	GAAAAATACATTAGAGAGAA+GGG	+	chr1_1:14634597-14634616	Msa0009780:CDS	25.0%
!!	TACTCTTTAAAAATGGATAG+AGG	+	chr1_1:14634693-14634712	Msa0009780:intron	25.0%
!	TATTTATTGCCAATTGTCTA+GGG	-	chr1_1:14634848-14634867	None:intergenic	25.0%
!	ATTCTTGAATTCACAATTTC+AGG	+	chr1_1:14634980-14634999	Msa0009780:intron	25.0%
!	ATGAAAATCTAGATATTTCC+GGG	-	chr1_1:14635312-14635331	None:intergenic	25.0%
!	CTAAGTCACATTATTGTATT+TGG	+	chr1_1:14635397-14635416	Msa0009780:intron	25.0%
!	TGATCTTATGCTATTAGATA+TGG	+	chr1_1:14635566-14635585	Msa0009780:CDS	25.0%
!	GATCTTATGCTATTAGATAT+GGG	+	chr1_1:14635567-14635586	Msa0009780:CDS	25.0%
!!	ATAGGAAGCATATTATCATT+AGG	-	chr1_1:14635801-14635820	None:intergenic	25.0%
!	TAATATGCTTCCTATTCAAA+AGG	+	chr1_1:14635806-14635825	Msa0009780:CDS	25.0%
!	GTCAAAATAAAGCAATATGA+TGG	+	chr1_1:14636116-14636135	Msa0009780:three_prime_UTR	25.0%
!!	AAAAAACACACACACATTTT+AGG	-	chr1_1:14636280-14636299	None:intergenic	25.0%
!!!	CATTGTTTCTAACTAATCAA+TGG	+	chr1_1:14634296-14634315	Msa0009780:exon	25.0%
!!	CTTCTCTCTAATGTATTTTT+CGG	-	chr1_1:14634598-14634617	None:intergenic	25.0%
!	GAAAAATACATTAGAGAGAA+GGG	+	chr1_1:14634597-14634616	Msa0009780:CDS	25.0%
!!	TACTCTTTAAAAATGGATAG+AGG	+	chr1_1:14634693-14634712	Msa0009780:intron	25.0%
!	TATTTATTGCCAATTGTCTA+GGG	-	chr1_1:14634848-14634867	None:intergenic	25.0%
!	ATTCTTGAATTCACAATTTC+AGG	+	chr1_1:14634980-14634999	Msa0009780:intron	25.0%
!	ATGAAAATCTAGATATTTCC+GGG	-	chr1_1:14635312-14635331	None:intergenic	25.0%
!	CTAAGTCACATTATTGTATT+TGG	+	chr1_1:14635397-14635416	Msa0009780:intron	25.0%
!	TGATCTTATGCTATTAGATA+TGG	+	chr1_1:14635566-14635585	Msa0009780:CDS	25.0%
!	GATCTTATGCTATTAGATAT+GGG	+	chr1_1:14635567-14635586	Msa0009780:CDS	25.0%
!!	ATAGGAAGCATATTATCATT+AGG	-	chr1_1:14635801-14635820	None:intergenic	25.0%
!	TAATATGCTTCCTATTCAAA+AGG	+	chr1_1:14635806-14635825	Msa0009780:CDS	25.0%
!	GTCAAAATAAAGCAATATGA+TGG	+	chr1_1:14636116-14636135	Msa0009780:three_prime_UTR	25.0%
!!	AAAAAACACACACACATTTT+AGG	-	chr1_1:14636280-14636299	None:intergenic	25.0%
	TTGTGTTTGTGACTTATGTT+TGG	-	chr1_1:14634373-14634392	None:intergenic	30.0%
	AAACCTAAGAGAATTCATGT+TGG	+	chr1_1:14634474-14634493	Msa0009780:CDS	30.0%
	CGAAAAATACATTAGAGAGA+AGG	+	chr1_1:14634596-14634615	Msa0009780:CDS	30.0%
	TGATAGAGTTAAAATCTCCT+TGG	-	chr1_1:14634769-14634788	None:intergenic	30.0%
	CTATTTATTGCCAATTGTCT+AGG	-	chr1_1:14634849-14634868	None:intergenic	30.0%
	TAATGTATGTATGTCTACCT+TGG	-	chr1_1:14635136-14635155	None:intergenic	30.0%
	AGAATGTGAATGCAAAACAA+AGG	-	chr1_1:14635201-14635220	None:intergenic	30.0%
	TTAATTAAGTAAATGGTCCC+CGG	+	chr1_1:14635291-14635310	Msa0009780:intron	30.0%
	TGAAAATCTAGATATTTCCG+GGG	-	chr1_1:14635311-14635330	None:intergenic	30.0%
!	TGTTGACGGAAAATTTTAGA+GGG	-	chr1_1:14635370-14635389	None:intergenic	30.0%
!	ATGTTGACGGAAAATTTTAG+AGG	-	chr1_1:14635371-14635390	None:intergenic	30.0%
	GTCACATTATTGTATTTGGA+AGG	+	chr1_1:14635401-14635420	Msa0009780:intron	30.0%
	ATATCAAAATCATCCCTAAC+TGG	+	chr1_1:14635531-14635550	Msa0009780:CDS	30.0%
	AGTGAATGAGACTGAAAAAT+GGG	+	chr1_1:14635632-14635651	Msa0009780:CDS	30.0%
	AATGTAAAAGTAATCCTCTC+CGG	-	chr1_1:14635690-14635709	None:intergenic	30.0%
!	TTTGAAGTAGCATTAATCAC+TGG	-	chr1_1:14635714-14635733	None:intergenic	30.0%
!	TGCTACTTCAAATATTGCTA+TGG	+	chr1_1:14635722-14635741	Msa0009780:CDS	30.0%
	AATATTGCTATGGTTGTTAC+TGG	+	chr1_1:14635732-14635751	Msa0009780:CDS	30.0%
!!	TATGCGATCCATTTTTAAGA+TGG	+	chr1_1:14635996-14636015	Msa0009780:three_prime_UTR	30.0%
	TTGTGTTTGTGACTTATGTT+TGG	-	chr1_1:14634373-14634392	None:intergenic	30.0%
	AAACCTAAGAGAATTCATGT+TGG	+	chr1_1:14634474-14634493	Msa0009780:CDS	30.0%
	CGAAAAATACATTAGAGAGA+AGG	+	chr1_1:14634596-14634615	Msa0009780:CDS	30.0%
	TGATAGAGTTAAAATCTCCT+TGG	-	chr1_1:14634769-14634788	None:intergenic	30.0%
	CTATTTATTGCCAATTGTCT+AGG	-	chr1_1:14634849-14634868	None:intergenic	30.0%
	TAATGTATGTATGTCTACCT+TGG	-	chr1_1:14635136-14635155	None:intergenic	30.0%
	AGAATGTGAATGCAAAACAA+AGG	-	chr1_1:14635201-14635220	None:intergenic	30.0%
	TTAATTAAGTAAATGGTCCC+CGG	+	chr1_1:14635291-14635310	Msa0009780:intron	30.0%
	TGAAAATCTAGATATTTCCG+GGG	-	chr1_1:14635311-14635330	None:intergenic	30.0%
!	TGTTGACGGAAAATTTTAGA+GGG	-	chr1_1:14635370-14635389	None:intergenic	30.0%
!	ATGTTGACGGAAAATTTTAG+AGG	-	chr1_1:14635371-14635390	None:intergenic	30.0%
	GTCACATTATTGTATTTGGA+AGG	+	chr1_1:14635401-14635420	Msa0009780:intron	30.0%
	ATATCAAAATCATCCCTAAC+TGG	+	chr1_1:14635531-14635550	Msa0009780:CDS	30.0%
	AGTGAATGAGACTGAAAAAT+GGG	+	chr1_1:14635632-14635651	Msa0009780:CDS	30.0%
	AATGTAAAAGTAATCCTCTC+CGG	-	chr1_1:14635690-14635709	None:intergenic	30.0%
!	TTTGAAGTAGCATTAATCAC+TGG	-	chr1_1:14635714-14635733	None:intergenic	30.0%
!	TGCTACTTCAAATATTGCTA+TGG	+	chr1_1:14635722-14635741	Msa0009780:CDS	30.0%
	AATATTGCTATGGTTGTTAC+TGG	+	chr1_1:14635732-14635751	Msa0009780:CDS	30.0%
!!	TATGCGATCCATTTTTAAGA+TGG	+	chr1_1:14635996-14636015	Msa0009780:three_prime_UTR	30.0%
	ACAATCATCAACCATGTCAT+TGG	+	chr1_1:14634389-14634408	Msa0009780:CDS	35.0%
!!	AAGTGTTTTTGTCCCAATTG+AGG	-	chr1_1:14634420-14634439	None:intergenic	35.0%
	AAGTCACATTGTGTCTTAGA+GGG	-	chr1_1:14634449-14634468	None:intergenic	35.0%
	GGCATCAATGAATAACAACA+AGG	+	chr1_1:14634509-14634528	Msa0009780:CDS	35.0%
!!	CTCTAATGTATTTTTCGGAG+AGG	-	chr1_1:14634593-14634612	None:intergenic	35.0%
	CAATACCTTAGATACTTGAC+TGG	-	chr1_1:14634651-14634670	None:intergenic	35.0%
	AGTTAAAATCTCCTTGGAGA+TGG	-	chr1_1:14634763-14634782	None:intergenic	35.0%
	AATTCACAATTTCAGGAAGC+TGG	+	chr1_1:14634987-14635006	Msa0009780:intron	35.0%
	CAATCGATAGTGTCACAATA+TGG	-	chr1_1:14635021-14635040	None:intergenic	35.0%
	CATATTGTGACACTATCGAT+TGG	+	chr1_1:14635019-14635038	Msa0009780:CDS	35.0%
!	GTCTAAGTGGCACATATTTT+TGG	+	chr1_1:14635041-14635060	Msa0009780:CDS	35.0%
!!!	TAAGTGGCACATATTTTTGG+TGG	+	chr1_1:14635044-14635063	Msa0009780:CDS	35.0%
!!	GACTTAGTTCTGAATGTTGA+CGG	-	chr1_1:14635384-14635403	None:intergenic	35.0%
	AATTGTGTTCACATTGAGTG+GGG	-	chr1_1:14635436-14635455	None:intergenic	35.0%
	CAATTGTGTTCACATTGAGT+GGG	-	chr1_1:14635437-14635456	None:intergenic	35.0%
	TCAATTGTGTTCACATTGAG+TGG	-	chr1_1:14635438-14635457	None:intergenic	35.0%
!!	AAATTTTGGGAAGCCAGTTA+GGG	-	chr1_1:14635547-14635566	None:intergenic	35.0%
!	ATGTAGCTTCTTTGTTTCCA+GGG	+	chr1_1:14635601-14635620	Msa0009780:CDS	35.0%
	CAGTGAATGAGACTGAAAAA+TGG	+	chr1_1:14635631-14635650	Msa0009780:CDS	35.0%
!	TCAGGATTCACCTTTTGAAT+AGG	-	chr1_1:14635819-14635838	None:intergenic	35.0%
	ATTCAAAAGGTGAATCCTGA+AGG	+	chr1_1:14635819-14635838	Msa0009780:CDS	35.0%
	ATCCTGAAGGAGATATCAAA+TGG	+	chr1_1:14635832-14635851	Msa0009780:CDS	35.0%
	AACCATTTGATATCTCCTTC+AGG	-	chr1_1:14635837-14635856	None:intergenic	35.0%
	AGGAGATATCAAATGGTTCT+TGG	+	chr1_1:14635839-14635858	Msa0009780:CDS	35.0%
	TATCAAATGGTTCTTGGACA+AGG	+	chr1_1:14635845-14635864	Msa0009780:CDS	35.0%
	ATCAAATGGTTCTTGGACAA+GGG	+	chr1_1:14635846-14635865	Msa0009780:CDS	35.0%
	ACGTTAGAATGAATGTTGCT+CGG	-	chr1_1:14635919-14635938	None:intergenic	35.0%
!!!	CGATCCATTTTTAAGATGGT+GGG	+	chr1_1:14636000-14636019	Msa0009780:three_prime_UTR	35.0%
	CTATGCTTCTTGTATTGTCT+TGG	-	chr1_1:14636206-14636225	None:intergenic	35.0%
	ACAATCATCAACCATGTCAT+TGG	+	chr1_1:14634389-14634408	Msa0009780:CDS	35.0%
!!	AAGTGTTTTTGTCCCAATTG+AGG	-	chr1_1:14634420-14634439	None:intergenic	35.0%
	AAGTCACATTGTGTCTTAGA+GGG	-	chr1_1:14634449-14634468	None:intergenic	35.0%
	GGCATCAATGAATAACAACA+AGG	+	chr1_1:14634509-14634528	Msa0009780:CDS	35.0%
!!	CTCTAATGTATTTTTCGGAG+AGG	-	chr1_1:14634593-14634612	None:intergenic	35.0%
	CAATACCTTAGATACTTGAC+TGG	-	chr1_1:14634651-14634670	None:intergenic	35.0%
	AGTTAAAATCTCCTTGGAGA+TGG	-	chr1_1:14634763-14634782	None:intergenic	35.0%
	AATTCACAATTTCAGGAAGC+TGG	+	chr1_1:14634987-14635006	Msa0009780:intron	35.0%
	CAATCGATAGTGTCACAATA+TGG	-	chr1_1:14635021-14635040	None:intergenic	35.0%
	CATATTGTGACACTATCGAT+TGG	+	chr1_1:14635019-14635038	Msa0009780:CDS	35.0%
!	GTCTAAGTGGCACATATTTT+TGG	+	chr1_1:14635041-14635060	Msa0009780:CDS	35.0%
!!!	TAAGTGGCACATATTTTTGG+TGG	+	chr1_1:14635044-14635063	Msa0009780:CDS	35.0%
!!	GACTTAGTTCTGAATGTTGA+CGG	-	chr1_1:14635384-14635403	None:intergenic	35.0%
	AATTGTGTTCACATTGAGTG+GGG	-	chr1_1:14635436-14635455	None:intergenic	35.0%
	CAATTGTGTTCACATTGAGT+GGG	-	chr1_1:14635437-14635456	None:intergenic	35.0%
	TCAATTGTGTTCACATTGAG+TGG	-	chr1_1:14635438-14635457	None:intergenic	35.0%
!!	AAATTTTGGGAAGCCAGTTA+GGG	-	chr1_1:14635547-14635566	None:intergenic	35.0%
!	ATGTAGCTTCTTTGTTTCCA+GGG	+	chr1_1:14635601-14635620	Msa0009780:CDS	35.0%
	CAGTGAATGAGACTGAAAAA+TGG	+	chr1_1:14635631-14635650	Msa0009780:CDS	35.0%
!	TCAGGATTCACCTTTTGAAT+AGG	-	chr1_1:14635819-14635838	None:intergenic	35.0%
	ATTCAAAAGGTGAATCCTGA+AGG	+	chr1_1:14635819-14635838	Msa0009780:CDS	35.0%
	ATCCTGAAGGAGATATCAAA+TGG	+	chr1_1:14635832-14635851	Msa0009780:CDS	35.0%
	AACCATTTGATATCTCCTTC+AGG	-	chr1_1:14635837-14635856	None:intergenic	35.0%
	AGGAGATATCAAATGGTTCT+TGG	+	chr1_1:14635839-14635858	Msa0009780:CDS	35.0%
	TATCAAATGGTTCTTGGACA+AGG	+	chr1_1:14635845-14635864	Msa0009780:CDS	35.0%
	ATCAAATGGTTCTTGGACAA+GGG	+	chr1_1:14635846-14635865	Msa0009780:CDS	35.0%
	ACGTTAGAATGAATGTTGCT+CGG	-	chr1_1:14635919-14635938	None:intergenic	35.0%
!!!	CGATCCATTTTTAAGATGGT+GGG	+	chr1_1:14636000-14636019	Msa0009780:three_prime_UTR	35.0%
	CTATGCTTCTTGTATTGTCT+TGG	-	chr1_1:14636206-14636225	None:intergenic	35.0%
	TTGGAATGCAACATGCTTTG+TGG	-	chr1_1:14634354-14634373	None:intergenic	40.0%
!!	TCATTGGTGTCACCTCAATT+GGG	+	chr1_1:14634405-14634424	Msa0009780:CDS	40.0%
	GAAGTCACATTGTGTCTTAG+AGG	-	chr1_1:14634450-14634469	None:intergenic	40.0%
	CCACCAACATGAATTCTCTT+AGG	-	chr1_1:14634480-14634499	None:intergenic	40.0%
	CCTAAGAGAATTCATGTTGG+TGG	+	chr1_1:14634477-14634496	Msa0009780:CDS	40.0%
	TTAGGTGTCAACTCAGTGTT+AGG	-	chr1_1:14634815-14634834	None:intergenic	40.0%
!	TAACACTGAGTTGACACCTA+AGG	+	chr1_1:14634814-14634833	Msa0009780:intron	40.0%
	AGTTGACACCTAAGGCTATT+TGG	+	chr1_1:14634822-14634841	Msa0009780:intron	40.0%
	TCGATAGTGTCACAATATGG+TGG	-	chr1_1:14635018-14635037	None:intergenic	40.0%
!!	ACACTATCGATTGGTCTAAG+TGG	+	chr1_1:14635028-14635047	Msa0009780:CDS	40.0%
	TTGCTATCAACGTGAGTCTT+TGG	-	chr1_1:14635084-14635103	None:intergenic	40.0%
	TAACGATAGCTTCATCTCCA+AGG	+	chr1_1:14635116-14635135	Msa0009780:CDS	40.0%
	ATTGTGTTCACATTGAGTGG+GGG	-	chr1_1:14635435-14635454	None:intergenic	40.0%
!!	CAAATTTTGGGAAGCCAGTT+AGG	-	chr1_1:14635548-14635567	None:intergenic	40.0%
	CTATTAGATATGGGACCTGA+TGG	+	chr1_1:14635576-14635595	Msa0009780:CDS	40.0%
	AAAGAAGCTACATGTCCATC+AGG	-	chr1_1:14635594-14635613	None:intergenic	40.0%
!	CATGTAGCTTCTTTGTTTCC+AGG	+	chr1_1:14635600-14635619	Msa0009780:CDS	40.0%
	TTTCAGTCTCATTCACTGCA+GGG	-	chr1_1:14635629-14635648	None:intergenic	40.0%
!	TTTTCAGTCTCATTCACTGC+AGG	-	chr1_1:14635630-14635649	None:intergenic	40.0%
	GTTTACTCTGCACTTGAGAA+AGG	+	chr1_1:14635774-14635793	Msa0009780:CDS	40.0%
	CGTTAGAATGAATGTTGCTC+GGG	-	chr1_1:14635918-14635937	None:intergenic	40.0%
!!!	GCGATCCATTTTTAAGATGG+TGG	+	chr1_1:14635999-14636018	Msa0009780:three_prime_UTR	40.0%
	AGGTCCCACCATCTTAAAAA+TGG	-	chr1_1:14636007-14636026	None:intergenic	40.0%
	TTATCGAGTGAAATTCACGC+AGG	-	chr1_1:14636027-14636046	None:intergenic	40.0%
	TTGGAATGCAACATGCTTTG+TGG	-	chr1_1:14634354-14634373	None:intergenic	40.0%
!!	TCATTGGTGTCACCTCAATT+GGG	+	chr1_1:14634405-14634424	Msa0009780:CDS	40.0%
	GAAGTCACATTGTGTCTTAG+AGG	-	chr1_1:14634450-14634469	None:intergenic	40.0%
	CCACCAACATGAATTCTCTT+AGG	-	chr1_1:14634480-14634499	None:intergenic	40.0%
	CCTAAGAGAATTCATGTTGG+TGG	+	chr1_1:14634477-14634496	Msa0009780:CDS	40.0%
	TTAGGTGTCAACTCAGTGTT+AGG	-	chr1_1:14634815-14634834	None:intergenic	40.0%
!	TAACACTGAGTTGACACCTA+AGG	+	chr1_1:14634814-14634833	Msa0009780:intron	40.0%
	AGTTGACACCTAAGGCTATT+TGG	+	chr1_1:14634822-14634841	Msa0009780:intron	40.0%
	TCGATAGTGTCACAATATGG+TGG	-	chr1_1:14635018-14635037	None:intergenic	40.0%
!!	ACACTATCGATTGGTCTAAG+TGG	+	chr1_1:14635028-14635047	Msa0009780:CDS	40.0%
	TTGCTATCAACGTGAGTCTT+TGG	-	chr1_1:14635084-14635103	None:intergenic	40.0%
	TAACGATAGCTTCATCTCCA+AGG	+	chr1_1:14635116-14635135	Msa0009780:CDS	40.0%
	ATTGTGTTCACATTGAGTGG+GGG	-	chr1_1:14635435-14635454	None:intergenic	40.0%
!!	CAAATTTTGGGAAGCCAGTT+AGG	-	chr1_1:14635548-14635567	None:intergenic	40.0%
	CTATTAGATATGGGACCTGA+TGG	+	chr1_1:14635576-14635595	Msa0009780:CDS	40.0%
	AAAGAAGCTACATGTCCATC+AGG	-	chr1_1:14635594-14635613	None:intergenic	40.0%
!	CATGTAGCTTCTTTGTTTCC+AGG	+	chr1_1:14635600-14635619	Msa0009780:CDS	40.0%
	TTTCAGTCTCATTCACTGCA+GGG	-	chr1_1:14635629-14635648	None:intergenic	40.0%
!	TTTTCAGTCTCATTCACTGC+AGG	-	chr1_1:14635630-14635649	None:intergenic	40.0%
	GTTTACTCTGCACTTGAGAA+AGG	+	chr1_1:14635774-14635793	Msa0009780:CDS	40.0%
	CGTTAGAATGAATGTTGCTC+GGG	-	chr1_1:14635918-14635937	None:intergenic	40.0%
!!!	GCGATCCATTTTTAAGATGG+TGG	+	chr1_1:14635999-14636018	Msa0009780:three_prime_UTR	40.0%
	AGGTCCCACCATCTTAAAAA+TGG	-	chr1_1:14636007-14636026	None:intergenic	40.0%
	TTATCGAGTGAAATTCACGC+AGG	-	chr1_1:14636027-14636046	None:intergenic	40.0%
	GCTTTGTGGAGTGCATGAAA+GGG	-	chr1_1:14634340-14634359	None:intergenic	45.0%
	TGCTTTGTGGAGTGCATGAA+AGG	-	chr1_1:14634341-14634360	None:intergenic	45.0%
	TTGAGGTGACACCAATGACA+TGG	-	chr1_1:14634403-14634422	None:intergenic	45.0%
!!	GTCATTGGTGTCACCTCAAT+TGG	+	chr1_1:14634404-14634423	Msa0009780:CDS	45.0%
!!	GAGAATTCATGTTGGTGGCT+TGG	+	chr1_1:14634482-14634501	Msa0009780:CDS	45.0%
	GGAGAGGTCAGCAACATATT+TGG	-	chr1_1:14634577-14634596	None:intergenic	45.0%
!	CTTAGATACTTGACTGGTCC+AGG	-	chr1_1:14634645-14634664	None:intergenic	45.0%
	CTGGACCAGTCAAGTATCTA+AGG	+	chr1_1:14634643-14634662	Msa0009780:CDS	45.0%
	CAAGTTAACGACCATCTCCA+AGG	+	chr1_1:14634749-14634768	Msa0009780:intron	45.0%
	GCTATTTGGCCCTAGACAAT+TGG	+	chr1_1:14634836-14634855	Msa0009780:intron	45.0%
	TTCACATTGAGTGGGGGAAT+TGG	-	chr1_1:14635429-14635448	None:intergenic	45.0%
	TGAGACAACCCTAAGACGTT+TGG	+	chr1_1:14635494-14635513	Msa0009780:CDS	45.0%
	GCTTGTGACCAAACGTCTTA+GGG	-	chr1_1:14635505-14635524	None:intergenic	45.0%
	TGCTTGTGACCAAACGTCTT+AGG	-	chr1_1:14635506-14635525	None:intergenic	45.0%
	GTAAAAGTAATCCTCTCCGG+CGG	-	chr1_1:14635687-14635706	None:intergenic	45.0%
	TTGCTCGGGTCGAAATTACT+TGG	-	chr1_1:14635904-14635923	None:intergenic	45.0%
!	AAGCAATATGATGGGACTGC+TGG	+	chr1_1:14636125-14636144	Msa0009780:three_prime_UTR	45.0%
	GCTTTGTGGAGTGCATGAAA+GGG	-	chr1_1:14634340-14634359	None:intergenic	45.0%
	TGCTTTGTGGAGTGCATGAA+AGG	-	chr1_1:14634341-14634360	None:intergenic	45.0%
	TTGAGGTGACACCAATGACA+TGG	-	chr1_1:14634403-14634422	None:intergenic	45.0%
!!	GTCATTGGTGTCACCTCAAT+TGG	+	chr1_1:14634404-14634423	Msa0009780:CDS	45.0%
!!	GAGAATTCATGTTGGTGGCT+TGG	+	chr1_1:14634482-14634501	Msa0009780:CDS	45.0%
	GGAGAGGTCAGCAACATATT+TGG	-	chr1_1:14634577-14634596	None:intergenic	45.0%
!	CTTAGATACTTGACTGGTCC+AGG	-	chr1_1:14634645-14634664	None:intergenic	45.0%
	CTGGACCAGTCAAGTATCTA+AGG	+	chr1_1:14634643-14634662	Msa0009780:CDS	45.0%
	CAAGTTAACGACCATCTCCA+AGG	+	chr1_1:14634749-14634768	Msa0009780:intron	45.0%
	GCTATTTGGCCCTAGACAAT+TGG	+	chr1_1:14634836-14634855	Msa0009780:intron	45.0%
	TTCACATTGAGTGGGGGAAT+TGG	-	chr1_1:14635429-14635448	None:intergenic	45.0%
	TGAGACAACCCTAAGACGTT+TGG	+	chr1_1:14635494-14635513	Msa0009780:CDS	45.0%
	GCTTGTGACCAAACGTCTTA+GGG	-	chr1_1:14635505-14635524	None:intergenic	45.0%
	TGCTTGTGACCAAACGTCTT+AGG	-	chr1_1:14635506-14635525	None:intergenic	45.0%
	GTAAAAGTAATCCTCTCCGG+CGG	-	chr1_1:14635687-14635706	None:intergenic	45.0%
	TTGCTCGGGTCGAAATTACT+TGG	-	chr1_1:14635904-14635923	None:intergenic	45.0%
!	AAGCAATATGATGGGACTGC+TGG	+	chr1_1:14636125-14636144	Msa0009780:three_prime_UTR	45.0%
!!	TCATGTTGGTGGCTTGGTGA+AGG	+	chr1_1:14634488-14634507	Msa0009780:CDS	50.0%
	GGATGTGCATGTGCTAAGCA+AGG	+	chr1_1:14634530-14634549	Msa0009780:CDS	50.0%
!	GGAGCATCTTGCTGTGTCTT+TGG	+	chr1_1:14634551-14634570	Msa0009780:CDS	50.0%
!!	TTCACCGTCGTTTTGTCTCC+TGG	+	chr1_1:14634624-14634643	Msa0009780:CDS	50.0%
	TGGTCCAGGAGACAAAACGA+CGG	-	chr1_1:14634631-14634650	None:intergenic	50.0%
!	GTCTAGGGCCAAATAGCCTT+AGG	-	chr1_1:14634833-14634852	None:intergenic	50.0%
	GATGATTCCCTACCAGCTGA+TGG	+	chr1_1:14635456-14635475	Msa0009780:CDS	50.0%
	GCTATGGTTGTTACTGGTGC+TGG	+	chr1_1:14635738-14635757	Msa0009780:CDS	50.0%
!!	TCATGTTGGTGGCTTGGTGA+AGG	+	chr1_1:14634488-14634507	Msa0009780:CDS	50.0%
	GGATGTGCATGTGCTAAGCA+AGG	+	chr1_1:14634530-14634549	Msa0009780:CDS	50.0%
!	GGAGCATCTTGCTGTGTCTT+TGG	+	chr1_1:14634551-14634570	Msa0009780:CDS	50.0%
!!	TTCACCGTCGTTTTGTCTCC+TGG	+	chr1_1:14634624-14634643	Msa0009780:CDS	50.0%
	TGGTCCAGGAGACAAAACGA+CGG	-	chr1_1:14634631-14634650	None:intergenic	50.0%
!	GTCTAGGGCCAAATAGCCTT+AGG	-	chr1_1:14634833-14634852	None:intergenic	50.0%
	GATGATTCCCTACCAGCTGA+TGG	+	chr1_1:14635456-14635475	Msa0009780:CDS	50.0%
	GCTATGGTTGTTACTGGTGC+TGG	+	chr1_1:14635738-14635757	Msa0009780:CDS	50.0%
	TGCTGCTCCATCAGCTGGTA+GGG	-	chr1_1:14635466-14635485	None:intergenic	55.0%
	ACATCTGCTGCTCCATCAGC+TGG	-	chr1_1:14635471-14635490	None:intergenic	55.0%
!	TCATTCACTGCAGGGTACCC+TGG	-	chr1_1:14635621-14635640	None:intergenic	55.0%
	AAAGTAATCCTCTCCGGCGG+CGG	-	chr1_1:14635684-14635703	None:intergenic	55.0%
!!	TGGACAAGGGTGCTGCTTCA+AGG	+	chr1_1:14635859-14635878	Msa0009780:CDS	55.0%
	TGCTGCTCCATCAGCTGGTA+GGG	-	chr1_1:14635466-14635485	None:intergenic	55.0%
	ACATCTGCTGCTCCATCAGC+TGG	-	chr1_1:14635471-14635490	None:intergenic	55.0%
!	TCATTCACTGCAGGGTACCC+TGG	-	chr1_1:14635621-14635640	None:intergenic	55.0%
	AAAGTAATCCTCTCCGGCGG+CGG	-	chr1_1:14635684-14635703	None:intergenic	55.0%
!!	TGGACAAGGGTGCTGCTTCA+AGG	+	chr1_1:14635859-14635878	Msa0009780:CDS	55.0%
	CTGCTGCTCCATCAGCTGGT+AGG	-	chr1_1:14635467-14635486	None:intergenic	60.0%
	GAATGCACCTAAACCGCCGC+CGG	+	chr1_1:14635668-14635687	Msa0009780:CDS	60.0%
	CTGCTGCTCCATCAGCTGGT+AGG	-	chr1_1:14635467-14635486	None:intergenic	60.0%
	GAATGCACCTAAACCGCCGC+CGG	+	chr1_1:14635668-14635687	Msa0009780:CDS	60.0%
	ATCCTCTCCGGCGGCGGTTT+AGG	-	chr1_1:14635678-14635697	None:intergenic	65.0%
	ATCCTCTCCGGCGGCGGTTT+AGG	-	chr1_1:14635678-14635697	None:intergenic	65.0%
	CACCTAAACCGCCGCCGGAG+AGG	+	chr1_1:14635673-14635692	Msa0009780:CDS	70.0%
	CACCTAAACCGCCGCCGGAG+AGG	+	chr1_1:14635673-14635692	Msa0009780:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	14634262	14636367	14634262	ID=Msa0009780;Name=Msa0009780
chr1_1	mRNA	14634262	14636367	14634262	ID=Msa0009780-mRNA-1;Parent=Msa0009780;Name=Msa0009780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=53\|1\|1\|1\|1\|1\|3\|474\|318
chr1_1	exon	14634262	14634664	14634262	ID=Msa0009780-mRNA-1:exon:5361;Parent=Msa0009780-mRNA-1
chr1_1	exon	14635002	14635137	14635002	ID=Msa0009780-mRNA-1:exon:5362;Parent=Msa0009780-mRNA-1
chr1_1	exon	14635423	14636367	14635423	ID=Msa0009780-mRNA-1:exon:5363;Parent=Msa0009780-mRNA-1
chr1_1	five_prime_UTR	14634262	14634314	14634262	ID=Msa0009780-mRNA-1:five_prime_utr;Parent=Msa0009780-mRNA-1
chr1_1	CDS	14634315	14634664	14634315	ID=Msa0009780-mRNA-1:cds;Parent=Msa0009780-mRNA-1
chr1_1	CDS	14635002	14635137	14635002	ID=Msa0009780-mRNA-1:cds;Parent=Msa0009780-mRNA-1
chr1_1	CDS	14635423	14635893	14635423	ID=Msa0009780-mRNA-1:cds;Parent=Msa0009780-mRNA-1
chr1_1	three_prime_UTR	14635894	14636367	14635894	ID=Msa0009780-mRNA-1:three_prime_utr;Parent=Msa0009780-mRNA-1

Gene Sequence

>Msa0009780

ATGGCTACTTCAACATTTATGTCCCTTTCATGCACTCCACAAAGCATGTTGCATTCCAAACATAAGTCACAAACACAATCATCAACCATGTCATTGGTGTCACCTCAATTGGGACAAAAACACTTCTATAACCCTCTAAGACACAATGTGACTTCTTTGAAACCTAAGAGAATTCATGTTGGTGGCTTGGTGAAGGCATCAATGAATAACAACAAGGATGTGCATGTGCTAAGCAAGGAGCATCTTGCTGTGTCTTTGGCCAAATATGTTGCTGACCTCTCCGAAAAATACATTAGAGAGAAGGGACGTTTCACCGTCGTTTTGTCTCCTGGACCAGTCAAGTATCTAAGGAAGCTGGTCGAACCACCATATTGTGACACTATCGATTGGTCTAAGTGGCACATATTTTTGGTGGATGAGAGAGTAGTGCCAAAGACTCACGTTGATAGCAATTACAAACTTGCTAACGATAGCTTCATCTCCAAGGTACCAATTCCCCCACTCAATGTGAACACAATTGATGATTCCCTACCAGCTGATGGAGCAGCAGATGTTTATGAGACAACCCTAAGACGTTTGGTCACAAGCAATGTGATATCAAAATCATCCCTAACTGGCTTCCCAAAATTTGATCTTATGCTATTAGATATGGGACCTGATGGACATGTAGCTTCTTTGTTTCCAGGGTACCCTGCAGTGAATGAGACTGAAAAATGGGTTACATATCTTAAGAATGCACCTAAACCGCCGCCGGAGAGGATTACTTTTACATTGCCAGTGATTAATGCTACTTCAAATATTGCTATGGTTGTTACTGGTGCTGGTAAAGCTGATGCTGTTTACTCTGCACTTGAGAAAGGTCCTAATGATAATATGCTTCCTATTCAAAAGGTGAATCCTGAAGGAGATATCAAATGGTTCTTGGACAAGGGTGCTGCTTCAAGGCTCTATAGATAG

Protein sequence

>Msa0009780

MATSTFMSLSCTPQSMLHSKHKSQTQSSTMSLVSPQLGQKHFYNPLRHNVTSLKPKRIHVGGLVKASMNNNKDVHVLSKEHLAVSLAKYVADLSEKYIREKGRFTVVLSPGPVKYLRKLVEPPYCDTIDWSKWHIFLVDERVVPKTHVDSNYKLANDSFISKVPIPPLNVNTIDDSLPADGAADVYETTLRRLVTSNVISKSSLTGFPKFDLMLLDMGPDGHVASLFPGYPAVNETEKWVTYLKNAPKPPPERITFTLPVINATSNIAMVVTGAGKADAVYSALEKGPNDNMLPIQKVNPEGDIKWFLDKGAASRLYR*