AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459920 MtrunA17_Chr5g0447941 98.397 312 5 0 1 312 1 312 0.0 635
Msa1459920 MtrunA17_Chr5g0447951 98.077 312 6 0 1 312 1 312 0.0 634
Msa1459920 MtrunA17_Chr5g0447961 98.077 312 6 0 1 312 1 312 0.0 634
Msa1459920 MtrunA17_Chr3g0121001 68.182 308 97 1 6 312 7 314 2.50e-162 454
Msa1459920 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 3.48e-138 393
Msa1459920 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 1.87e-96 287
Msa1459920 MtrunA17_Chr6g0480011 49.346 306 136 8 1 296 1 297 1.27e-94 283
Msa1459920 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 1.18e-92 277
Msa1459920 MtrunA17_Chr8g0368921 42.958 284 159 2 19 300 15 297 2.49e-75 233
Msa1459920 MtrunA17_Chr4g0018921 41.754 285 161 4 18 300 12 293 2.42e-73 228
Msa1459920 MtrunA17_Chr8g0368931 43.403 288 152 4 19 302 15 295 9.90e-71 221
Msa1459920 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 1.05e-70 221
Msa1459920 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 2.94e-66 210
Msa1459920 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 8.82e-64 203
Msa1459920 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 7.34e-60 189
Msa1459920 MtrunA17_Chr4g0036051 39.414 307 171 6 15 310 6 308 9.13e-60 193
Msa1459920 MtrunA17_Chr7g0243551 38.686 274 160 5 20 292 23 289 4.26e-58 189
Msa1459920 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 2.45e-51 167
Msa1459920 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 4.91e-50 164
Msa1459920 MtrunA17_Chr4g0009621 42.466 219 114 2 82 300 1 207 1.22e-43 149
Msa1459920 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 6.53e-26 99.4
Msa1459920 MtrunA17_Chr4g0036291 50.000 90 43 2 20 107 17 106 1.93e-23 92.8
Msa1459920 MtrunA17_Chr4g0036311 43.119 109 57 3 1 107 1 106 1.01e-22 90.9
Msa1459920 MtrunA17_Chr4g0036251 46.296 108 49 3 1 107 1 100 1.28e-22 90.5
Msa1459920 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 6.36e-17 75.1
Msa1459920 MtrunA17_Chr3g0095421 26.140 329 159 13 15 285 42 344 1.15e-16 79.7
Msa1459920 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 7.91e-13 68.2
Msa1459920 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 4.05e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459920 AT1G59960.1 53.571 308 132 6 1 300 1 305 1.50e-112 329
Msa1459920 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.81e-105 311
Msa1459920 AT2G37770.2 44.755 286 147 4 19 300 15 293 5.94e-78 240
Msa1459920 AT2G37790.1 43.357 286 151 4 19 300 15 293 2.06e-76 236
Msa1459920 AT5G62420.1 44.014 284 153 4 20 300 14 294 7.63e-75 233
Msa1459920 AT5G01670.1 42.254 284 155 6 19 300 23 299 4.54e-73 228
Msa1459920 AT2G37760.4 43.662 284 147 4 19 299 15 288 2.34e-72 225
Msa1459920 AT2G37760.3 43.662 284 147 4 19 299 15 288 2.34e-72 225
Msa1459920 AT2G37760.5 44.128 281 144 4 19 296 15 285 2.04e-71 223
Msa1459920 AT2G37760.2 43.463 283 147 4 19 298 15 287 1.85e-70 221
Msa1459920 AT2G37760.1 43.463 283 147 4 19 298 15 287 1.85e-70 221
Msa1459920 AT3G53880.1 42.049 283 159 3 19 300 15 293 1.10e-69 219
Msa1459920 AT2G21260.1 39.384 292 162 6 15 295 6 293 1.06e-67 214
Msa1459920 AT3G53880.2 42.143 280 151 4 19 294 15 287 2.24e-67 213
Msa1459920 AT5G01670.2 38.585 311 155 7 19 300 23 326 3.85e-67 214
Msa1459920 AT2G21250.1 38.111 307 175 6 15 310 6 308 3.11e-66 210
Msa1459920 AT2G37760.6 43.333 240 129 3 62 298 6 241 6.30e-58 187
Msa1459920 AT2G37760.7 43.333 240 129 3 62 298 6 241 6.30e-58 187
Msa1459920 AT2G37770.1 48.223 197 92 3 19 212 15 204 8.74e-55 180
Msa1459920 AT2G21250.2 42.381 210 110 5 15 217 6 211 1.56e-48 162
Msa1459920 AT2G21260.2 35.000 220 130 5 87 295 8 225 3.43e-41 143
Msa1459920 AT1G06690.1 27.336 289 154 9 35 285 85 355 1.27e-19 88.6
Msa1459920 AT1G60680.1 26.220 328 181 14 15 300 14 322 3.90e-15 75.5
Msa1459920 AT5G53580.1 24.211 285 161 9 44 290 80 347 4.74e-15 75.5
Msa1459920 AT1G60690.1 24.768 323 168 14 25 300 27 321 2.09e-11 64.3
Msa1459920 AT1G60750.1 25.887 282 159 12 44 300 50 306 5.69e-11 63.2

Find 63 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCTTCAATTGGACTATT+TGG 0.148242 tig0040550:-889 Msa1459920:CDS
AATCAAAGATACGCAAATTT+TGG 0.165725 tig0040550:+294 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.288960 tig0040550:+831 None:intergenic
TGGACTTGTATTTGATTCAT+TGG 0.300948 tig0040550:-869 Msa1459920:CDS
GTGTCTATAACCTTGTTTGA+TGG 0.333209 tig0040550:+1186 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 tig0040550:+434 None:intergenic
CTGCTTGCACCTTTCCTCAA+TGG 0.366580 tig0040550:+461 None:intergenic
AAAATTTGCGTATCTTTGAT+TGG 0.369647 tig0040550:-292 Msa1459920:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 tig0040550:+1232 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 tig0040550:-788 Msa1459920:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 tig0040550:-741 Msa1459920:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 tig0040550:+789 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 tig0040550:+813 None:intergenic
AGTCCAGGCTTGGTTGGTCC+AGG 0.384417 tig0040550:+212 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.396016 tig0040550:-1163 Msa1459920:CDS
TTGCACAAATTTCTCTAAGA+TGG 0.398611 tig0040550:-373 Msa1459920:CDS
TTCATGTAGGACTCTTCAAT+TGG 0.407231 tig0040550:-898 Msa1459920:intron
ATCCCTGGACCAACCAAGCC+TGG 0.412790 tig0040550:-215 Msa1459920:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 tig0040550:-787 Msa1459920:CDS
TCTTTCCTTATCATAGCTCT+TGG 0.419142 tig0040550:+322 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 tig0040550:-1115 Msa1459920:CDS
TGTTCCCAAGAGCTATGATA+AGG 0.425757 tig0040550:-327 Msa1459920:CDS
CTTTCCTTATCATAGCTCTT+GGG 0.433848 tig0040550:+323 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 tig0040550:-441 Msa1459920:CDS
ATGGAGGAAGGCTTGAAACT+TGG 0.453724 tig0040550:-759 Msa1459920:CDS
AAGCAGAATCGTTTGATCCC+TGG 0.463702 tig0040550:-230 Msa1459920:CDS
AAAGTTTGGAAGTAACAAAA+AGG 0.467615 tig0040550:+1074 None:intergenic
CATTGAGGAAAGGTGCAAGC+AGG 0.481117 tig0040550:-460 Msa1459920:CDS
TATGGCTCAGAACAAGCTCT+TGG 0.491850 tig0040550:-1145 Msa1459920:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 tig0040550:-1128 Msa1459920:CDS
TGACTTACTTGATTGACTGC+TGG 0.506233 tig0040550:+660 None:intergenic
CTTTCTTACATGTGAAGTCA+GGG 0.506502 tig0040550:+1233 None:intergenic
AGTACTAATGTAAAATAACT+TGG 0.506920 tig0040550:+33 None:intergenic
AAGTTTCAAGCCTTCCTCCA+TGG 0.512565 tig0040550:+761 None:intergenic
TGTTTGTAAGAACCTTTGTT+GGG 0.514265 tig0040550:+1299 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 tig0040550:-795 Msa1459920:CDS
CAATTGAAGATGCCTGTAGT+TGG 0.517264 tig0040550:-1268 Msa1459920:CDS
GTCCAGGCTTGGTTGGTCCA+GGG 0.519273 tig0040550:+213 None:intergenic
GAGGTCATTGAGTCCAGGCT+TGG 0.520820 tig0040550:+202 None:intergenic
GCTGATCCCATTCCAACTAC+AGG 0.540084 tig0040550:+1256 None:intergenic
GAAGATGCCTGTAGTTGGAA+TGG 0.546457 tig0040550:-1263 Msa1459920:CDS
TCATTGAGTCCAGGCTTGGT+TGG 0.552459 tig0040550:+206 None:intergenic
ATTGAGGAAAGGTGCAAGCA+GGG 0.556202 tig0040550:-459 Msa1459920:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 tig0040550:-849 Msa1459920:CDS
AAGATGCCTGTAGTTGGAAT+GGG 0.562876 tig0040550:-1262 Msa1459920:CDS
TCATAGAGGTCATTGAGTCC+AGG 0.572409 tig0040550:+197 None:intergenic
GTGTTTGTAAGAACCTTTGT+TGG 0.579407 tig0040550:+1298 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 tig0040550:-544 Msa1459920:CDS
GTTTGGGAATCCATGGAGGA+AGG 0.586893 tig0040550:-771 Msa1459920:CDS
ATCATTGAAGCCATCAAACA+AGG 0.587661 tig0040550:-1196 Msa1459920:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 tig0040550:-778 Msa1459920:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 tig0040550:-359 Msa1459920:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 tig0040550:+1234 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 tig0040550:+1034 None:intergenic
CAGGAATAACAAGATGAGGA+TGG 0.629084 tig0040550:+1038 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 tig0040550:-404 Msa1459920:CDS
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 tig0040550:-1140 Msa1459920:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 tig0040550:+846 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.653623 tig0040550:-458 Msa1459920:CDS
TTTCCTCAATGGTGAAAATG+CGG 0.658755 tig0040550:+472 None:intergenic
TAGTGTTGAAATCCCAACAA+AGG 0.659490 tig0040550:-1311 Msa1459920:CDS
AGGTGTTTGGGAATCCATGG+AGG 0.706988 tig0040550:-775 Msa1459920:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 tig0040550:+671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAATATTACATTCATT+TGG - tig0040550:442-461 Msa1459920:CDS 15.0%
!! CTAAAAATTAATCTAAACTT+AGG + tig0040550:791-810 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG + tig0040550:1281-1300 None:intergenic 15.0%
!! ATATCAATATTACATTCATT+TGG - tig0040550:442-461 Msa1459920:CDS 15.0%
!! CTAAAAATTAATCTAAACTT+AGG + tig0040550:791-810 None:intergenic 15.0%
!!! AATTAAACAGATAGATTTTA+AGG + tig0040550:1281-1300 None:intergenic 15.0%
!!! ATGTTGTTTTTTTTGTTGTT+GGG + tig0040550:82-101 None:intergenic 20.0%
!! AACAACAAAAAAAACAACAT+GGG - tig0040550:82-101 Msa1459920:three_prime_UTR 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG - tig0040550:505-524 Msa1459920:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG + tig0040550:1236-1255 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG + tig0040550:1386-1405 None:intergenic 20.0%
!!! ATGTTGTTTTTTTTGTTGTT+GGG + tig0040550:82-101 None:intergenic 20.0%
!! AACAACAAAAAAAACAACAT+GGG - tig0040550:82-101 Msa1459920:three_prime_UTR 20.0%
!!! TTGATTTGTTAATTTCATGT+AGG - tig0040550:505-524 Msa1459920:CDS 20.0%
!!! TATTTTTTTAGTCATCATAG+AGG + tig0040550:1236-1255 None:intergenic 20.0%
!! AGTACTAATGTAAAATAACT+TGG + tig0040550:1386-1405 None:intergenic 20.0%
!!! CATGTTGTTTTTTTTGTTGT+TGG + tig0040550:83-102 None:intergenic 25.0%
! CAACAACAAAAAAAACAACA+TGG - tig0040550:81-100 Msa1459920:three_prime_UTR 25.0%
! AAAGTTTGGAAGTAACAAAA+AGG + tig0040550:345-364 None:intergenic 25.0%
!!! TTTTTGTTACTTCCAAACTT+TGG - tig0040550:344-363 Msa1459920:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG - tig0040550:345-364 Msa1459920:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG - tig0040550:445-464 Msa1459920:CDS 25.0%
! CAATGAACTCATAAATGTAT+AGG - tig0040550:852-871 Msa1459920:CDS 25.0%
!! AATCAAAGATACGCAAATTT+TGG + tig0040550:1125-1144 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - tig0040550:1124-1143 Msa1459920:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG + tig0040550:1268-1287 None:intergenic 25.0%
!!! CATGTTGTTTTTTTTGTTGT+TGG + tig0040550:83-102 None:intergenic 25.0%
! CAACAACAAAAAAAACAACA+TGG - tig0040550:81-100 Msa1459920:three_prime_UTR 25.0%
! AAAGTTTGGAAGTAACAAAA+AGG + tig0040550:345-364 None:intergenic 25.0%
!!! TTTTTGTTACTTCCAAACTT+TGG - tig0040550:344-363 Msa1459920:CDS 25.0%
!!! TTTTGTTACTTCCAAACTTT+GGG - tig0040550:345-364 Msa1459920:CDS 25.0%
! TCAATATTACATTCATTTGG+AGG - tig0040550:445-464 Msa1459920:CDS 25.0%
! CAATGAACTCATAAATGTAT+AGG - tig0040550:852-871 Msa1459920:CDS 25.0%
!! AATCAAAGATACGCAAATTT+TGG + tig0040550:1125-1144 None:intergenic 25.0%
! AAAATTTGCGTATCTTTGAT+TGG - tig0040550:1124-1143 Msa1459920:CDS 25.0%
!!! GATTTTAAGGCAAACTTAAA+AGG + tig0040550:1268-1287 None:intergenic 25.0%
!!! GTTTTTTTTGTTGTTGGGTT+GGG + tig0040550:77-96 None:intergenic 30.0%
!!! TGTTTTTTTTGTTGTTGGGT+TGG + tig0040550:78-97 None:intergenic 30.0%
TGTTTGTAAGAACCTTTGTT+GGG + tig0040550:120-139 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG - tig0040550:547-566 Msa1459920:intron 30.0%
ATTGGAAATGAAAACTTTCC+AGG + tig0040550:588-607 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - tig0040550:593-612 Msa1459920:intron 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - tig0040550:629-648 Msa1459920:intron 30.0%
TGAACTCATAAATGTATAGG+TGG - tig0040550:855-874 Msa1459920:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + tig0040550:985-1004 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - tig0040550:1043-1062 Msa1459920:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG - tig0040550:1306-1325 Msa1459920:CDS 30.0%
CAAACTCGTTTCAAAAACAA+GGG + tig0040550:1336-1355 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG + tig0040550:1337-1356 None:intergenic 30.0%
!!! GTTTTTTTTGTTGTTGGGTT+GGG + tig0040550:77-96 None:intergenic 30.0%
!!! TGTTTTTTTTGTTGTTGGGT+TGG + tig0040550:78-97 None:intergenic 30.0%
TGTTTGTAAGAACCTTTGTT+GGG + tig0040550:120-139 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG - tig0040550:547-566 Msa1459920:intron 30.0%
ATTGGAAATGAAAACTTTCC+AGG + tig0040550:588-607 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - tig0040550:593-612 Msa1459920:intron 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - tig0040550:629-648 Msa1459920:intron 30.0%
TGAACTCATAAATGTATAGG+TGG - tig0040550:855-874 Msa1459920:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG + tig0040550:985-1004 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - tig0040550:1043-1062 Msa1459920:CDS 30.0%
!!! TTGTTGTTTCTTTTGAGCTT+GGG - tig0040550:1306-1325 Msa1459920:CDS 30.0%
CAAACTCGTTTCAAAAACAA+GGG + tig0040550:1336-1355 None:intergenic 30.0%
TCAAACTCGTTTCAAAAACA+AGG + tig0040550:1337-1356 None:intergenic 30.0%
! TAGTGTTGAAATCCCAACAA+AGG - tig0040550:105-124 Msa1459920:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + tig0040550:121-140 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + tig0040550:185-204 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + tig0040550:186-205 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + tig0040550:187-206 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - tig0040550:220-239 Msa1459920:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + tig0040550:233-252 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - tig0040550:301-320 Msa1459920:CDS 35.0%
! GTTTTCAGTAACCCAAAGTT+TGG + tig0040550:359-378 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + tig0040550:400-419 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG - tig0040550:518-537 Msa1459920:CDS 35.0%
GACTCTTCAATTGGACTATT+TGG - tig0040550:527-546 Msa1459920:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG - tig0040550:621-640 Msa1459920:intron 35.0%
CAAACACCTTTCACATCAAA+TGG + tig0040550:630-649 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - tig0040550:628-647 Msa1459920:intron 35.0%
TTTCCTCAATGGTGAAAATG+CGG + tig0040550:947-966 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - tig0040550:1057-1076 Msa1459920:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + tig0040550:1096-1115 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + tig0040550:1097-1116 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG - tig0040550:1305-1324 Msa1459920:CDS 35.0%
! TAGTGTTGAAATCCCAACAA+AGG - tig0040550:105-124 Msa1459920:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + tig0040550:121-140 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + tig0040550:185-204 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + tig0040550:186-205 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + tig0040550:187-206 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - tig0040550:220-239 Msa1459920:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + tig0040550:233-252 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - tig0040550:301-320 Msa1459920:CDS 35.0%
! GTTTTCAGTAACCCAAAGTT+TGG + tig0040550:359-378 None:intergenic 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + tig0040550:400-419 None:intergenic 35.0%
TTCATGTAGGACTCTTCAAT+TGG - tig0040550:518-537 Msa1459920:CDS 35.0%
GACTCTTCAATTGGACTATT+TGG - tig0040550:527-546 Msa1459920:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG - tig0040550:621-640 Msa1459920:intron 35.0%
CAAACACCTTTCACATCAAA+TGG + tig0040550:630-649 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - tig0040550:628-647 Msa1459920:intron 35.0%
TTTCCTCAATGGTGAAAATG+CGG + tig0040550:947-966 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - tig0040550:1057-1076 Msa1459920:CDS 35.0%
CTTTCCTTATCATAGCTCTT+GGG + tig0040550:1096-1115 None:intergenic 35.0%
TCTTTCCTTATCATAGCTCT+TGG + tig0040550:1097-1116 None:intergenic 35.0%
!!! CTTGTTGTTTCTTTTGAGCT+TGG - tig0040550:1305-1324 Msa1459920:CDS 35.0%
!!! TTTTTGTTGTTGGGTTGGGA+AGG + tig0040550:73-92 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - tig0040550:148-167 Msa1459920:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - tig0040550:154-173 Msa1459920:three_prime_UTR 40.0%
TTTGATACTGCTGCTGCATA+TGG - tig0040550:253-272 Msa1459920:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + tig0040550:381-400 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + tig0040550:385-404 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + tig0040550:606-625 None:intergenic 40.0%
CTTGGACTCACTAAAGCTAT+TGG - tig0040550:675-694 Msa1459920:CDS 40.0%
TGACTTACTTGATTGACTGC+TGG + tig0040550:759-778 None:intergenic 40.0%
! TAACCGCATTTTCACCATTG+AGG - tig0040550:941-960 Msa1459920:intron 40.0%
! GCATTTTCACCATTGAGGAA+AGG - tig0040550:946-965 Msa1459920:intron 40.0%
AAAGAGATTGCAGATGCACA+TGG - tig0040550:1012-1031 Msa1459920:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - tig0040550:1089-1108 Msa1459920:CDS 40.0%
!!! TTTTTGTTGTTGGGTTGGGA+AGG + tig0040550:73-92 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - tig0040550:148-167 Msa1459920:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - tig0040550:154-173 Msa1459920:three_prime_UTR 40.0%
TTTGATACTGCTGCTGCATA+TGG - tig0040550:253-272 Msa1459920:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + tig0040550:381-400 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + tig0040550:385-404 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + tig0040550:606-625 None:intergenic 40.0%
CTTGGACTCACTAAAGCTAT+TGG - tig0040550:675-694 Msa1459920:CDS 40.0%
TGACTTACTTGATTGACTGC+TGG + tig0040550:759-778 None:intergenic 40.0%
! TAACCGCATTTTCACCATTG+AGG - tig0040550:941-960 Msa1459920:intron 40.0%
! GCATTTTCACCATTGAGGAA+AGG - tig0040550:946-965 Msa1459920:intron 40.0%
AAAGAGATTGCAGATGCACA+TGG - tig0040550:1012-1031 Msa1459920:intron 40.0%
TGTTCCCAAGAGCTATGATA+AGG - tig0040550:1089-1108 Msa1459920:CDS 40.0%
GAAGATGCCTGTAGTTGGAA+TGG - tig0040550:153-172 Msa1459920:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - tig0040550:271-290 Msa1459920:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - tig0040550:288-307 Msa1459920:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + tig0040550:573-592 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - tig0040550:638-657 Msa1459920:intron 45.0%
AAGTTTCAAGCCTTCCTCCA+TGG + tig0040550:658-677 None:intergenic 45.0%
ATGGAGGAAGGCTTGAAACT+TGG - tig0040550:657-676 Msa1459920:intron 45.0%
ATTGACTGCTGGAAGAACAG+TGG + tig0040550:748-767 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + tig0040550:888-907 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - tig0040550:910-929 Msa1459920:intron 45.0%
! ATTGAGGAAAGGTGCAAGCA+GGG - tig0040550:957-976 Msa1459920:intron 45.0%
CAGGGGACCAAATGAAGTTA+TGG - tig0040550:975-994 Msa1459920:intron 45.0%
AAGCAGAATCGTTTGATCCC+TGG - tig0040550:1186-1205 Msa1459920:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG + tig0040550:1222-1241 None:intergenic 45.0%
GAAGATGCCTGTAGTTGGAA+TGG - tig0040550:153-172 Msa1459920:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - tig0040550:271-290 Msa1459920:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - tig0040550:288-307 Msa1459920:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + tig0040550:573-592 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - tig0040550:638-657 Msa1459920:intron 45.0%
AAGTTTCAAGCCTTCCTCCA+TGG + tig0040550:658-677 None:intergenic 45.0%
ATGGAGGAAGGCTTGAAACT+TGG - tig0040550:657-676 Msa1459920:intron 45.0%
ATTGACTGCTGGAAGAACAG+TGG + tig0040550:748-767 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + tig0040550:888-907 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - tig0040550:910-929 Msa1459920:intron 45.0%
! ATTGAGGAAAGGTGCAAGCA+GGG - tig0040550:957-976 Msa1459920:intron 45.0%
CAGGGGACCAAATGAAGTTA+TGG - tig0040550:975-994 Msa1459920:intron 45.0%
AAGCAGAATCGTTTGATCCC+TGG - tig0040550:1186-1205 Msa1459920:CDS 45.0%
TCATAGAGGTCATTGAGTCC+AGG + tig0040550:1222-1241 None:intergenic 45.0%
GCTGATCCCATTCCAACTAC+AGG + tig0040550:163-182 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - tig0040550:276-295 Msa1459920:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - tig0040550:641-660 Msa1459920:intron 50.0%
GTTTGGGAATCCATGGAGGA+AGG - tig0040550:645-664 Msa1459920:intron 50.0%
AGGTGGAGATGAACCTTGCA+TGG - tig0040550:872-891 Msa1459920:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+TGG + tig0040550:958-977 None:intergenic 50.0%
! CATTGAGGAAAGGTGCAAGC+AGG - tig0040550:956-975 Msa1459920:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - tig0040550:958-977 Msa1459920:intron 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG + tig0040550:1213-1232 None:intergenic 50.0%
GCTGATCCCATTCCAACTAC+AGG + tig0040550:163-182 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - tig0040550:276-295 Msa1459920:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - tig0040550:641-660 Msa1459920:intron 50.0%
GTTTGGGAATCCATGGAGGA+AGG - tig0040550:645-664 Msa1459920:intron 50.0%
AGGTGGAGATGAACCTTGCA+TGG - tig0040550:872-891 Msa1459920:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+TGG + tig0040550:958-977 None:intergenic 50.0%
! CATTGAGGAAAGGTGCAAGC+AGG - tig0040550:956-975 Msa1459920:intron 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG - tig0040550:958-977 Msa1459920:intron 50.0%
! TCATTGAGTCCAGGCTTGGT+TGG + tig0040550:1213-1232 None:intergenic 50.0%
! TGGCCACTTAGTTCTCAGCC+TGG - tig0040550:567-586 Msa1459920:intron 55.0%
GAGGTCATTGAGTCCAGGCT+TGG + tig0040550:1217-1236 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG - tig0040550:567-586 Msa1459920:intron 55.0%
GAGGTCATTGAGTCCAGGCT+TGG + tig0040550:1217-1236 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+TGG - tig0040550:1201-1220 Msa1459920:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG + tig0040550:1206-1225 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG + tig0040550:1207-1226 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+TGG - tig0040550:1201-1220 Msa1459920:CDS 60.0%
! GTCCAGGCTTGGTTGGTCCA+GGG + tig0040550:1206-1225 None:intergenic 60.0%
! AGTCCAGGCTTGGTTGGTCC+AGG + tig0040550:1207-1226 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0040550 gene 26 1412 26 ID=Msa1459920;Name=Msa1459920
tig0040550 mRNA 26 1412 26 ID=Msa1459920-mRNA-1;Parent=Msa1459920;Name=Msa1459920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=74|1|1|1|1|1|3|164|312
tig0040550 exon 26 564 26 ID=Msa1459920-mRNA-1:exon:22490;Parent=Msa1459920-mRNA-1
tig0040550 exon 668 911 668 ID=Msa1459920-mRNA-1:exon:22489;Parent=Msa1459920-mRNA-1
tig0040550 exon 1019 1412 1019 ID=Msa1459920-mRNA-1:exon:22488;Parent=Msa1459920-mRNA-1
tig0040550 five_prime_UTR 1339 1412 1339 ID=Msa1459920-mRNA-1:five_prime_utr;Parent=Msa1459920-mRNA-1
tig0040550 CDS 1019 1338 1019 ID=Msa1459920-mRNA-1:cds;Parent=Msa1459920-mRNA-1
tig0040550 CDS 668 911 668 ID=Msa1459920-mRNA-1:cds;Parent=Msa1459920-mRNA-1
tig0040550 CDS 190 564 190 ID=Msa1459920-mRNA-1:cds;Parent=Msa1459920-mRNA-1
tig0040550 three_prime_UTR 26 189 26 ID=Msa1459920-mRNA-1:three_prime_utr;Parent=Msa1459920-mRNA-1
Gene Sequence

>Msa1459920

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTAGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGACCTTTTTGTTACTTCCAAACTTTGGGTTACTGAAAACCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAATTGGACTATTTGGACTTGTATTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAGGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCACCATTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAACCAAAATTTGCGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGATCAAATTAAGCAGAATCGTTTGATCCCTGGACCAACCAAGCCTGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa1459920

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEEGLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*