Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354760 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354760 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354760 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095230 | Msa1354760 | 0.804910 | 1.721337e-49 | -8.615850e-47 |
| Msa1354420 | Msa1354760 | 0.913167 | 8.416870e-84 | -8.615850e-47 |
| Msa1354430 | Msa1354760 | 0.848779 | 4.931551e-60 | -8.615850e-47 |
| Msa1354480 | Msa1354760 | 0.842057 | 3.261212e-58 | -8.615850e-47 |
| Msa1354490 | Msa1354760 | 0.863504 | 2.374534e-64 | -8.615850e-47 |
| Msa1354500 | Msa1354760 | 0.975854 | 1.010865e-140 | -8.615850e-47 |
| Msa1354550 | Msa1354760 | 0.907325 | 5.725059e-81 | -8.615850e-47 |
| Msa1354560 | Msa1354760 | 0.843816 | 1.110327e-58 | -8.615850e-47 |
| Msa1354610 | Msa1354760 | 0.882044 | 1.448833e-70 | -8.615850e-47 |
| Msa1354620 | Msa1354760 | 0.861740 | 8.298847e-64 | -8.615850e-47 |
| Msa1354630 | Msa1354760 | 0.974350 | 5.306726e-138 | -8.615850e-47 |
| Msa1354680 | Msa1354760 | 0.934437 | 4.045127e-96 | -8.615850e-47 |
| Msa1354690 | Msa1354760 | 0.858718 | 6.793982e-63 | -8.615850e-47 |
| Msa1354700 | Msa1354760 | 0.834566 | 2.784018e-56 | -8.615850e-47 |
| Msa1354740 | Msa1354760 | 0.861917 | 7.321037e-64 | -8.615850e-47 |
| Msa1354750 | Msa1354760 | 0.862158 | 6.178567e-64 | -8.615850e-47 |
| Msa1354760 | Msa1354810 | 0.907069 | 7.540067e-81 | -8.615850e-47 |
| Msa1354760 | Msa1354820 | 0.842576 | 2.376396e-58 | -8.615850e-47 |
| Msa1354760 | Msa1354910 | 0.805612 | 1.227073e-49 | -8.615850e-47 |
| Msa1354760 | Msa1354920 | 0.855754 | 5.103022e-62 | -8.615850e-47 |
| Msa1354760 | Msa1354980 | 0.912213 | 2.519320e-83 | -8.615850e-47 |
| Msa1354760 | Msa1354990 | 0.854357 | 1.299163e-61 | -8.615850e-47 |
| Msa1354760 | Msa1355080 | 0.825550 | 4.408894e-54 | -8.615850e-47 |
| Msa1354760 | Msa1355090 | 0.851413 | 9.022189e-61 | -8.615850e-47 |
| Msa1354760 | Msa1365890 | 0.892744 | 1.196572e-74 | -8.615850e-47 |
| Msa1354760 | Msa1365900 | 0.837662 | 4.554655e-57 | -8.615850e-47 |
| Msa1354760 | Msa1365950 | 0.843308 | 1.517297e-58 | -8.615850e-47 |
| Msa1354760 | Msa1365960 | 0.819140 | 1.358087e-52 | -8.615850e-47 |
| Msa1354760 | Msa1365970 | 0.935137 | 1.360651e-96 | -8.615850e-47 |
| Msa1354760 | Msa1366080 | 0.896959 | 2.235585e-76 | -8.615850e-47 |
| Msa1354760 | Msa1366090 | 0.820688 | 6.010736e-53 | -8.615850e-47 |
| Msa1354760 | Msa1368230 | 0.854530 | 1.157806e-61 | -8.615850e-47 |
| Msa1354760 | Msa1368240 | 0.944018 | 4.206243e-103 | -8.615850e-47 |
| Msa1354760 | Msa1380610 | 0.821816 | 3.301309e-53 | -8.615850e-47 |
| Msa1354760 | Msa1385410 | 0.866740 | 2.286559e-65 | -8.615850e-47 |
| Msa1354760 | Msa1385420 | 0.818279 | 2.129501e-52 | -8.615850e-47 |
| Msa1354760 | Msa1391090 | 0.825952 | 3.540748e-54 | -8.615850e-47 |
| Msa1354760 | Msa1391100 | 0.854109 | 1.532429e-61 | -8.615850e-47 |
| Msa1354760 | Msa1391110 | 0.955422 | 3.147932e-113 | -8.615850e-47 |
| Msa1354760 | Msa1391160 | 0.856159 | 3.884967e-62 | -8.615850e-47 |
| Msa1354760 | Msa1391170 | 0.848015 | 8.020271e-60 | -8.615850e-47 |
| Msa1354760 | Msa1391220 | 0.832240 | 1.058514e-55 | -8.615850e-47 |
| Msa1354760 | Msa1391230 | 0.829872 | 4.037316e-55 | -8.615850e-47 |
| Msa1354760 | Msa1391240 | 0.948255 | 1.355995e-106 | -8.615850e-47 |
| Msa1354760 | Msa1394030 | 0.855419 | 6.388663e-62 | -8.615850e-47 |
| Msa1354760 | Msa1394040 | 0.826208 | 3.077606e-54 | -8.615850e-47 |
| Msa1354760 | Msa1394080 | 0.800489 | 1.407036e-48 | -8.615850e-47 |
| Msa1354760 | Msa1394150 | 0.813935 | 1.989066e-51 | -8.615850e-47 |
| Msa1354760 | Msa1394160 | 0.843642 | 1.235866e-58 | -8.615850e-47 |
| Msa1354760 | Msa1394210 | 0.837694 | 4.468761e-57 | -8.615850e-47 |
| Msa1354760 | Msa1394250 | 0.803171 | 3.960117e-49 | -8.615850e-47 |
| Msa1354760 | Msa1460120 | 0.857969 | 1.136011e-62 | -8.615850e-47 |
| Msa1354760 | Msa1460130 | 0.855191 | 7.443830e-62 | -8.615850e-47 |
| Msa0126730 | Msa1354760 | 0.816079 | 6.653819e-52 | -8.615850e-47 |
| Msa0126750 | Msa1354760 | 0.828737 | 7.613838e-55 | -8.615850e-47 |
| Msa0202640 | Msa1354760 | 0.852555 | 4.275041e-61 | -8.615850e-47 |
| Msa1305090 | Msa1354760 | 0.823289 | 1.501008e-53 | -8.615850e-47 |
| Msa0405420 | Msa1354760 | 0.859998 | 2.805304e-63 | -8.615850e-47 |
| Msa0405430 | Msa1354760 | 0.857897 | 1.193332e-62 | -8.615850e-47 |
| Msa0405440 | Msa1354760 | 0.927971 | 5.576674e-92 | -8.615850e-47 |
| Msa0405510 | Msa1354760 | 0.852191 | 5.426592e-61 | -8.615850e-47 |
| Msa0405520 | Msa1354760 | 0.835043 | 2.111041e-56 | -8.615850e-47 |
| Msa0405530 | Msa1354760 | 0.948678 | 5.855509e-107 | -8.615850e-47 |
| Msa0983630 | Msa1354760 | 0.883498 | 4.265938e-71 | -8.615850e-47 |
| Msa0983640 | Msa1354760 | 0.835396 | 1.719595e-56 | -8.615850e-47 |
| Msa1022050 | Msa1354760 | 0.901128 | 3.664361e-78 | -8.615850e-47 |
| Msa1022060 | Msa1354760 | 0.835510 | 1.608964e-56 | -8.615850e-47 |
| Msa1064410 | Msa1354760 | 0.864277 | 1.364792e-64 | -8.615850e-47 |
| Msa1086080 | Msa1354760 | 0.801348 | 9.392189e-49 | -8.615850e-47 |
| Msa1086090 | Msa1354760 | 0.843740 | 1.163611e-58 | -8.615850e-47 |
| Msa1086140 | Msa1354760 | 0.842468 | 2.538629e-58 | -8.615850e-47 |
| Msa1086190 | Msa1354760 | 0.812067 | 5.108719e-51 | -8.615850e-47 |
| Msa1086200 | Msa1354760 | 0.861254 | 1.167119e-63 | -8.615850e-47 |
| Msa1086270 | Msa1354760 | 0.824057 | 9.918902e-54 | -8.615850e-47 |
| Msa1086300 | Msa1354760 | 0.805914 | 1.060491e-49 | -8.615850e-47 |
| Msa1086320 | Msa1354760 | 0.821023 | 5.033774e-53 | -8.615850e-47 |
| Msa1086510 | Msa1354760 | 0.817696 | 2.884552e-52 | -8.615850e-47 |
| Msa1086550 | Msa1354760 | 0.829878 | 4.023927e-55 | -8.615850e-47 |
| Msa1086590 | Msa1354760 | 0.809239 | 2.087284e-50 | -8.615850e-47 |
| Msa1086600 | Msa1354760 | 0.857546 | 1.516478e-62 | -8.615850e-47 |
| Msa1086670 | Msa1354760 | 0.806747 | 7.079092e-50 | -8.615850e-47 |
| Msa1086680 | Msa1354760 | 0.805307 | 1.421720e-49 | -8.615850e-47 |
| Msa1086720 | Msa1354760 | 0.861361 | 1.083089e-63 | -8.615850e-47 |
| Msa1086730 | Msa1354760 | 0.872816 | 2.377214e-67 | -8.615850e-47 |
| Msa1086740 | Msa1354760 | 0.957269 | 4.081061e-115 | -8.615850e-47 |
| Msa1086790 | Msa1354760 | 0.913642 | 4.857136e-84 | -8.615850e-47 |
| Msa1086800 | Msa1354760 | 0.850782 | 1.358735e-60 | -8.615850e-47 |
| Msa1086860 | Msa1354760 | 0.804267 | 2.344619e-49 | -8.615850e-47 |
| Msa1086890 | Msa1354760 | 0.812024 | 5.219209e-51 | -8.615850e-47 |
| Msa1086900 | Msa1354760 | 0.848019 | 7.999798e-60 | -8.615850e-47 |
| Msa1086960 | Msa1354760 | 0.925857 | 1.038877e-90 | -8.615850e-47 |
| Msa1086970 | Msa1354760 | 0.834238 | 3.364337e-56 | -8.615850e-47 |
| Msa1087030 | Msa1354760 | 0.849138 | 3.919099e-60 | -8.615850e-47 |
| Msa1087040 | Msa1354760 | 0.866022 | 3.861575e-65 | -8.615850e-47 |
| Msa1087050 | Msa1354760 | 0.949277 | 1.760230e-107 | -8.615850e-47 |
| Msa1087110 | Msa1354760 | 0.934192 | 5.903392e-96 | -8.615850e-47 |
| Msa1087120 | Msa1354760 | 0.827055 | 1.932904e-54 | -8.615850e-47 |
| Msa0263770 | Msa1354760 | 0.878603 | 2.457734e-69 | -8.615850e-47 |
| Msa0268190 | Msa1354760 | 0.806539 | 7.831278e-50 | -8.615850e-47 |
| Msa0268210 | Msa1354760 | 0.837442 | 5.184473e-57 | -8.615850e-47 |
| Msa0268250 | Msa1354760 | 0.826284 | 2.951383e-54 | -8.615850e-47 |
| Msa0268260 | Msa1354760 | 0.838613 | 2.591262e-57 | -8.615850e-47 |
| Msa0268270 | Msa1354760 | 0.936849 | 8.981674e-98 | -8.615850e-47 |
| Msa0268300 | Msa1354760 | 0.882899 | 7.072095e-71 | -8.615850e-47 |
| Msa0268310 | Msa1354760 | 0.826151 | 3.174752e-54 | -8.615850e-47 |
| Msa0268430 | Msa1354760 | 0.820846 | 5.526343e-53 | -8.615850e-47 |
| Msa0268450 | Msa1354760 | 0.826371 | 2.813785e-54 | -8.615850e-47 |
| Msa0268560 | Msa1354760 | 0.802944 | 4.411033e-49 | -8.615850e-47 |
| Msa0268570 | Msa1354760 | 0.845668 | 3.518550e-59 | -8.615850e-47 |
| Msa0268630 | Msa1354760 | 0.831595 | 1.526903e-55 | -8.615850e-47 |
| Msa0268660 | Msa1354760 | 0.808617 | 2.835722e-50 | -8.615850e-47 |
| Msa0268670 | Msa1354760 | 0.830114 | 3.524208e-55 | -8.615850e-47 |
| Msa0268740 | Msa1354760 | 0.816902 | 4.353005e-52 | -8.615850e-47 |
| Msa0268750 | Msa1354760 | 0.856043 | 4.200218e-62 | -8.615850e-47 |
| Msa0268830 | Msa1354760 | 0.854744 | 1.003690e-61 | -8.615850e-47 |
| Msa0268860 | Msa1354760 | 0.818449 | 1.948598e-52 | -8.615850e-47 |
| Msa0268880 | Msa1354760 | 0.814736 | 1.323537e-51 | -8.615850e-47 |
| Msa0268950 | Msa1354760 | 0.807457 | 5.007444e-50 | -8.615850e-47 |
| Msa0268960 | Msa1354760 | 0.856018 | 4.271273e-62 | -8.615850e-47 |
| Msa0269040 | Msa1354760 | 0.849818 | 2.532813e-60 | -8.615850e-47 |
| Msa0269070 | Msa1354760 | 0.817325 | 3.496182e-52 | -8.615850e-47 |
| Msa0269090 | Msa1354760 | 0.806852 | 6.725091e-50 | -8.615850e-47 |
| Msa0269130 | Msa1354760 | 0.811217 | 7.818808e-51 | -8.615850e-47 |
| Msa0269140 | Msa1354760 | 0.868579 | 5.879095e-66 | -8.615850e-47 |
| Msa0269150 | Msa1354760 | 0.964651 | 1.350332e-123 | -8.615850e-47 |
| Msa0344190 | Msa1354760 | 0.809032 | 2.311503e-50 | -8.615850e-47 |
| Msa0344310 | Msa1354760 | 0.828108 | 1.079588e-54 | -8.615850e-47 |
| Msa1143120 | Msa1354760 | 0.843160 | 1.662135e-58 | -8.615850e-47 |
| Msa1143170 | Msa1354760 | 0.843284 | 1.540291e-58 | -8.615850e-47 |
| Msa0484040 | Msa1354760 | 0.817959 | 2.515215e-52 | -8.615850e-47 |
| Msa0582510 | Msa1354760 | 0.844917 | 5.615767e-59 | -8.615850e-47 |
| Msa0582540 | Msa1354760 | 0.806473 | 8.085662e-50 | -8.615850e-47 |
| Msa0582640 | Msa1354760 | 0.808953 | 2.403430e-50 | -8.615850e-47 |
| Msa0582650 | Msa1354760 | 0.843530 | 1.324290e-58 | -8.615850e-47 |
| Msa0582690 | Msa1354760 | 0.850955 | 1.214818e-60 | -8.615850e-47 |
| Msa0582730 | Msa1354760 | 0.809677 | 1.681581e-50 | -8.615850e-47 |
| Msa0582760 | Msa1354760 | 0.810877 | 9.264314e-51 | -8.615850e-47 |
| Msa0582770 | Msa1354760 | 0.851055 | 1.138539e-60 | -8.615850e-47 |
| Msa0582810 | Msa1354760 | 0.857438 | 1.632504e-62 | -8.615850e-47 |
| Msa0582840 | Msa1354760 | 0.816304 | 5.924362e-52 | -8.615850e-47 |
| Msa0582910 | Msa1354760 | 0.810861 | 9.336219e-51 | -8.615850e-47 |
| Msa0582920 | Msa1354760 | 0.851343 | 9.443694e-61 | -8.615850e-47 |
| Msa0591270 | Msa1354760 | 0.805375 | 1.376126e-49 | -8.615850e-47 |
| Msa0591290 | Msa1354760 | 0.806737 | 7.112931e-50 | -8.615850e-47 |
| Msa0591310 | Msa1354760 | 0.862430 | 5.096506e-64 | -8.615850e-47 |
| Msa0591350 | Msa1354760 | 0.909341 | 6.340621e-82 | -8.615850e-47 |
| Msa0591360 | Msa1354760 | 0.840563 | 8.064894e-58 | -8.615850e-47 |
| Msa0591380 | Msa1354760 | 0.828329 | 9.551087e-55 | -8.615850e-47 |
| Msa0867680 | Msa1354760 | 0.878451 | 2.777966e-69 | -8.615850e-47 |
| Msa0867690 | Msa1354760 | 0.851645 | 7.754784e-61 | -8.615850e-47 |
| Msa0876520 | Msa1354760 | 0.862892 | 3.672073e-64 | -8.615850e-47 |
| Msa0908220 | Msa1354760 | 0.850242 | 1.927528e-60 | -8.615850e-47 |
| Msa0908230 | Msa1354760 | 0.872408 | 3.254002e-67 | -8.615850e-47 |
| Msa0908240 | Msa1354760 | 0.955348 | 3.730773e-113 | -8.615850e-47 |
| Msa0908310 | Msa1354760 | 0.911739 | 4.325085e-83 | -8.615850e-47 |
| Msa0908320 | Msa1354760 | 0.845431 | 4.078796e-59 | -8.615850e-47 |
| Msa0908370 | Msa1354760 | 0.900085 | 1.042171e-77 | -8.615850e-47 |
| Msa0908380 | Msa1354760 | 0.837407 | 5.294007e-57 | -8.615850e-47 |
| Msa0908430 | Msa1354760 | 0.865176 | 7.137561e-65 | -8.615850e-47 |
| Msa0908440 | Msa1354760 | 0.885648 | 6.781497e-72 | -8.615850e-47 |
| Msa0908450 | Msa1354760 | 0.956405 | 3.190497e-114 | -8.615850e-47 |
| Msa0908480 | Msa1354760 | 0.867593 | 1.221001e-65 | -8.615850e-47 |
| Msa0908530 | Msa1354760 | 0.918965 | 8.119486e-87 | -8.615850e-47 |
| Msa0908540 | Msa1354760 | 0.841464 | 4.678717e-58 | -8.615850e-47 |
| Msa0908590 | Msa1354760 | 0.847655 | 1.007806e-59 | -8.615850e-47 |
| Msa0908600 | Msa1354760 | 0.837937 | 3.870037e-57 | -8.615850e-47 |
| Msa0908610 | Msa1354760 | 0.951476 | 1.885139e-109 | -8.615850e-47 |
| Msa0908650 | Msa1354760 | 0.853245 | 2.714978e-61 | -8.615850e-47 |
| Msa0908660 | Msa1354760 | 0.837331 | 5.535543e-57 | -8.615850e-47 |
| Msa0908670 | Msa1354760 | 0.951121 | 3.974701e-109 | -8.615850e-47 |
| Msa0908720 | Msa1354760 | 0.898752 | 3.897079e-77 | -8.615850e-47 |
| Msa0908730 | Msa1354760 | 0.820758 | 5.789787e-53 | -8.615850e-47 |
| Msa0911190 | Msa1354760 | 0.924650 | 5.306973e-90 | -8.615850e-47 |
| Msa0911200 | Msa1354760 | 0.835214 | 1.911578e-56 | -8.615850e-47 |
| Msa0911230 | Msa1354760 | 0.890809 | 7.038856e-74 | -8.615850e-47 |
| Msa0924830 | Msa1354760 | 0.845627 | 3.609813e-59 | -8.615850e-47 |
| Msa0924880 | Msa1354760 | 0.833592 | 4.880116e-56 | -8.615850e-47 |
| Msa0924920 | Msa1354760 | 0.898646 | 4.328384e-77 | -8.615850e-47 |
| Msa0924930 | Msa1354760 | 0.848468 | 6.013557e-60 | -8.615850e-47 |
| Msa0924940 | Msa1354760 | 0.858668 | 7.034411e-63 | -8.615850e-47 |
| Msa0925100 | Msa1354760 | 0.928492 | 2.673737e-92 | -8.615850e-47 |
| Msa0925110 | Msa1354760 | 0.878582 | 2.500073e-69 | -8.615850e-47 |
| Msa0931070 | Msa1354760 | 0.831541 | 1.574578e-55 | -8.615850e-47 |
| Msa0931130 | Msa1354760 | 0.846701 | 1.841102e-59 | -8.615850e-47 |
| Msa0931230 | Msa1354760 | 0.828395 | 9.208162e-55 | -8.615850e-47 |
| Msa0931260 | Msa1354760 | 0.855106 | 7.881351e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354760 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1354760 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354760 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354760 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354760 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1354760 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0014543:+498533 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0014543:-498566 | Msa1354760:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0014543:+498684 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0014543:-499528 | Msa1354760:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0014543:+498594 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0014543:+498764 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0014543:-498565 | Msa1354760:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0014543:+498567 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0014543:+498694 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0014543:-498668 | Msa1354760:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0014543:-499734 | Msa1354760:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0014543:+499859 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0014543:-498740 | Msa1354760:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0014543:+499536 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0014543:-498707 | Msa1354760:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0014543:+499885 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0014543:+498595 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0014543:-498594 | Msa1354760:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0014543:+499871 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0014543:-499927 | Msa1354760:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0014543:-499914 | Msa1354760:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0014543:+498754 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0014543:-498667 | Msa1354760:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0014543:-498828 | Msa1354760:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0014543:+498739 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0014543:-498713 | Msa1354760:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0014543:-498620 | Msa1354760:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0014543:+499886 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0014543:-499520 | Msa1354760:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0014543:-498666 | Msa1354760:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0014543:-498581 | Msa1354760:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0014543:+498695 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0014543:-498602 | Msa1354760:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0014543:+498724 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0014543:+499546 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0014543:-498564 | Msa1354760:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0014543:-498644 | Msa1354760:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0014543:-498665 | Msa1354760:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0014543:+498626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:498690-498709 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:498691-498710 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:498694-498713 | Msa1354760:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:498690-498709 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:498691-498710 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:498694-498713 | Msa1354760:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:499130-499149 | Msa1354760:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:499130-499149 | Msa1354760:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:498872-498891 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:499491-499510 | Msa1354760:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:499536-499555 | Msa1354760:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:498872-498891 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:499491-499510 | Msa1354760:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:499536-499555 | Msa1354760:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:498650-498669 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:498651-498670 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:498770-498789 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:498771-498790 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:498772-498791 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:498873-498892 | Msa1354760:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:498878-498897 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:499015-499034 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:499238-499257 | Msa1354760:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:499314-499333 | Msa1354760:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:499315-499334 | Msa1354760:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:499382-499401 | Msa1354760:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:499392-499411 | Msa1354760:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:499455-499474 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:499537-499556 | Msa1354760:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:499591-499610 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:499791-499810 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:498650-498669 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:498651-498670 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:498770-498789 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:498771-498790 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:498772-498791 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:498873-498892 | Msa1354760:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:498878-498897 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:499015-499034 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:499238-499257 | Msa1354760:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:499314-499333 | Msa1354760:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:499315-499334 | Msa1354760:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:499382-499401 | Msa1354760:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:499392-499411 | Msa1354760:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:499455-499474 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:499537-499556 | Msa1354760:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:499591-499610 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:499791-499810 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:498645-498664 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:498684-498703 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:498738-498757 | Msa1354760:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:498815-498834 | Msa1354760:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:499371-499390 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:499372-499391 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:499370-499389 | Msa1354760:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:499387-499406 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:499385-499404 | Msa1354760:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:499391-499410 | Msa1354760:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:499781-499800 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:499805-499824 | Msa1354760:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:499907-499926 | Msa1354760:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:498645-498664 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:498684-498703 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:498738-498757 | Msa1354760:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:498815-498834 | Msa1354760:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:499371-499390 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:499372-499391 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:499370-499389 | Msa1354760:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:499387-499406 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:499385-499404 | Msa1354760:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:499391-499410 | Msa1354760:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:499781-499800 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:499805-499824 | Msa1354760:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:499907-499926 | Msa1354760:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:498683-498702 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:498802-498821 | Msa1354760:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:498808-498827 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:498906-498925 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:499169-499188 | Msa1354760:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:499197-499216 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:499369-499388 | Msa1354760:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:499593-499612 | Msa1354760:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:499621-499640 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:499623-499642 | Msa1354760:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:499691-499710 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:499701-499720 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:499702-499721 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:499759-499778 | Msa1354760:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:499780-499799 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:499804-499823 | Msa1354760:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:499806-499825 | Msa1354760:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:499908-499927 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:499906-499925 | Msa1354760:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:499908-499927 | Msa1354760:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:498683-498702 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:498802-498821 | Msa1354760:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:498808-498827 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:498906-498925 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:499169-499188 | Msa1354760:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:499197-499216 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:499369-499388 | Msa1354760:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:499593-499612 | Msa1354760:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:499621-499640 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:499623-499642 | Msa1354760:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:499691-499710 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:499701-499720 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:499702-499721 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:499759-499778 | Msa1354760:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:499780-499799 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:499804-499823 | Msa1354760:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:499806-499825 | Msa1354760:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:499908-499927 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:499906-499925 | Msa1354760:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:499908-499927 | Msa1354760:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:498558-498577 | Msa1354760:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:498589-498608 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:498604-498623 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:498609-498628 | Msa1354760:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:498616-498635 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:498682-498701 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:498801-498820 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:498855-498874 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:498859-498878 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:498980-498999 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:498979-498998 | Msa1354760:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:499327-499346 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:499348-499367 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:499541-499560 | Msa1354760:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:499700-499719 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:499711-499730 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:499721-499740 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:499751-499770 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:499765-499784 | Msa1354760:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:499807-499826 | Msa1354760:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:499849-499868 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:499852-499871 | Msa1354760:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:498558-498577 | Msa1354760:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:498589-498608 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:498604-498623 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:498609-498628 | Msa1354760:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:498616-498635 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:498682-498701 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:498801-498820 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:498855-498874 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:498859-498878 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:498980-498999 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:498979-498998 | Msa1354760:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:499327-499346 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:499348-499367 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:499541-499560 | Msa1354760:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:499700-499719 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:499711-499730 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:499721-499740 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:499751-499770 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:499765-499784 | Msa1354760:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:499807-499826 | Msa1354760:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:499849-499868 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:499852-499871 | Msa1354760:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:498590-498609 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:498681-498700 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:498893-498912 | Msa1354760:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:498897-498916 | Msa1354760:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:498903-498922 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:498951-498970 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:498952-498971 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:498953-498972 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:498952-498971 | Msa1354760:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:499298-499317 | Msa1354760:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:499402-499421 | Msa1354760:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:499546-499565 | Msa1354760:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:499563-499582 | Msa1354760:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:499636-499655 | Msa1354760:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:499811-499830 | Msa1354760:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:499812-499831 | Msa1354760:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:499828-499847 | Msa1354760:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:499880-499899 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:498590-498609 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:498681-498700 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:498893-498912 | Msa1354760:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:498897-498916 | Msa1354760:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:498903-498922 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:498951-498970 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:498952-498971 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:498953-498972 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:498952-498971 | Msa1354760:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:499298-499317 | Msa1354760:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:499402-499421 | Msa1354760:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:499546-499565 | Msa1354760:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:499563-499582 | Msa1354760:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:499636-499655 | Msa1354760:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:499811-499830 | Msa1354760:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:499812-499831 | Msa1354760:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:499828-499847 | Msa1354760:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:499880-499899 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:498680-498699 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:499330-499349 | Msa1354760:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:499605-499624 | Msa1354760:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:499644-499663 | Msa1354760:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:499736-499755 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:499818-499837 | Msa1354760:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:499881-499900 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:499878-499897 | Msa1354760:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:499891-499910 | Msa1354760:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:498680-498699 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:499330-499349 | Msa1354760:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:499605-499624 | Msa1354760:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:499644-499663 | Msa1354760:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:499736-499755 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:499818-499837 | Msa1354760:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:499881-499900 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:499878-499897 | Msa1354760:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:499891-499910 | Msa1354760:CDS | 50.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:498679-498698 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:499280-499299 | Msa1354760:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:499281-499300 | Msa1354760:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:499289-499308 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:499732-499751 | Msa1354760:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:499870-499889 | Msa1354760:intron | 55.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:498679-498698 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:499280-499299 | Msa1354760:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:499281-499300 | Msa1354760:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:499289-499308 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:499732-499751 | Msa1354760:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:499870-499889 | Msa1354760:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:498929-498948 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:498946-498965 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:498944-498963 | Msa1354760:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:499285-499304 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:499282-499301 | Msa1354760:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:499286-499305 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:498929-498948 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:498946-498965 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:498944-498963 | Msa1354760:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:499285-499304 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:499282-499301 | Msa1354760:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:499286-499305 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:498939-498958 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:498939-498958 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 498547 | 499947 | 498547 | ID=Msa1354760;Name=Msa1354760 |
| tig0014543 | mRNA | 498547 | 499947 | 498547 | ID=Msa1354760-mRNA-1;Parent=Msa1354760;Name=Msa1354760-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0014543 | exon | 499871 | 499947 | 499871 | ID=Msa1354760-mRNA-1:exon:9222;Parent=Msa1354760-mRNA-1 |
| tig0014543 | exon | 499735 | 499778 | 499735 | ID=Msa1354760-mRNA-1:exon:9221;Parent=Msa1354760-mRNA-1 |
| tig0014543 | exon | 499521 | 499579 | 499521 | ID=Msa1354760-mRNA-1:exon:9220;Parent=Msa1354760-mRNA-1 |
| tig0014543 | exon | 498547 | 498840 | 498547 | ID=Msa1354760-mRNA-1:exon:9219;Parent=Msa1354760-mRNA-1 |
| tig0014543 | CDS | 499871 | 499947 | 499871 | ID=Msa1354760-mRNA-1:cds;Parent=Msa1354760-mRNA-1 |
| tig0014543 | CDS | 499735 | 499778 | 499735 | ID=Msa1354760-mRNA-1:cds;Parent=Msa1354760-mRNA-1 |
| tig0014543 | CDS | 499521 | 499579 | 499521 | ID=Msa1354760-mRNA-1:cds;Parent=Msa1354760-mRNA-1 |
| tig0014543 | CDS | 498547 | 498840 | 498547 | ID=Msa1354760-mRNA-1:cds;Parent=Msa1354760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
