Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354500 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354500 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354500 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354500 | 0.804529 | 2.067745e-49 | -8.615850e-47 |
| Msa0095230 | Msa1354500 | 0.805883 | 1.076633e-49 | -8.615850e-47 |
| Msa1354320 | Msa1354500 | 0.812563 | 3.980243e-51 | -8.615850e-47 |
| Msa1354420 | Msa1354500 | 0.914480 | 1.823988e-84 | -8.615850e-47 |
| Msa1354430 | Msa1354500 | 0.853022 | 3.144829e-61 | -8.615850e-47 |
| Msa1354480 | Msa1354500 | 0.844651 | 6.625067e-59 | -8.615850e-47 |
| Msa1354490 | Msa1354500 | 0.863774 | 1.957294e-64 | -8.615850e-47 |
| Msa1354500 | Msa1354550 | 0.914579 | 1.623482e-84 | -8.615850e-47 |
| Msa1354500 | Msa1354560 | 0.850808 | 1.336549e-60 | -8.615850e-47 |
| Msa1354500 | Msa1354610 | 0.876186 | 1.705023e-68 | -8.615850e-47 |
| Msa1354500 | Msa1354620 | 0.869471 | 3.020158e-66 | -8.615850e-47 |
| Msa1354500 | Msa1354630 | 0.971455 | 3.437987e-133 | -8.615850e-47 |
| Msa1354500 | Msa1354680 | 0.941073 | 7.826903e-101 | -8.615850e-47 |
| Msa1354500 | Msa1354690 | 0.868745 | 5.196828e-66 | -8.615850e-47 |
| Msa1354500 | Msa1354700 | 0.835924 | 1.263674e-56 | -8.615850e-47 |
| Msa1354500 | Msa1354740 | 0.864427 | 1.225503e-64 | -8.615850e-47 |
| Msa1354500 | Msa1354750 | 0.859761 | 3.306396e-63 | -8.615850e-47 |
| Msa1354500 | Msa1354760 | 0.975854 | 1.010865e-140 | -8.615850e-47 |
| Msa1354500 | Msa1354810 | 0.916908 | 1.009937e-85 | -8.615850e-47 |
| Msa1354500 | Msa1354820 | 0.849660 | 2.804070e-60 | -8.615850e-47 |
| Msa1354500 | Msa1354910 | 0.818976 | 1.479375e-52 | -8.615850e-47 |
| Msa1354500 | Msa1354920 | 0.864743 | 9.762236e-65 | -8.615850e-47 |
| Msa1354500 | Msa1354980 | 0.913683 | 4.632434e-84 | -8.615850e-47 |
| Msa1354500 | Msa1354990 | 0.852260 | 5.188545e-61 | -8.615850e-47 |
| Msa1354500 | Msa1355080 | 0.832163 | 1.105470e-55 | -8.615850e-47 |
| Msa1354500 | Msa1355090 | 0.852423 | 4.662021e-61 | -8.615850e-47 |
| Msa1354500 | Msa1365890 | 0.892121 | 2.124238e-74 | -8.615850e-47 |
| Msa1354500 | Msa1365900 | 0.840454 | 8.612003e-58 | -8.615850e-47 |
| Msa1354500 | Msa1365950 | 0.855157 | 7.617484e-62 | -8.615850e-47 |
| Msa1354500 | Msa1365960 | 0.835275 | 1.844537e-56 | -8.615850e-47 |
| Msa1354500 | Msa1365970 | 0.941199 | 6.301955e-101 | -8.615850e-47 |
| Msa1354500 | Msa1366080 | 0.901616 | 2.236522e-78 | -8.615850e-47 |
| Msa1354500 | Msa1366090 | 0.823531 | 1.317187e-53 | -8.615850e-47 |
| Msa1354500 | Msa1368230 | 0.861026 | 1.369504e-63 | -8.615850e-47 |
| Msa1354500 | Msa1368240 | 0.935663 | 5.949398e-97 | -8.615850e-47 |
| Msa1354500 | Msa1380610 | 0.832730 | 8.002324e-56 | -8.615850e-47 |
| Msa1354500 | Msa1385410 | 0.878446 | 2.790973e-69 | -8.615850e-47 |
| Msa1354500 | Msa1385420 | 0.827877 | 1.226984e-54 | -8.615850e-47 |
| Msa1354500 | Msa1391090 | 0.831010 | 2.126547e-55 | -8.615850e-47 |
| Msa1354500 | Msa1391100 | 0.849288 | 3.560158e-60 | -8.615850e-47 |
| Msa1354500 | Msa1391110 | 0.946575 | 3.554134e-105 | -8.615850e-47 |
| Msa1354500 | Msa1391160 | 0.864873 | 8.889544e-65 | -8.615850e-47 |
| Msa1354500 | Msa1391170 | 0.851480 | 8.637794e-61 | -8.615850e-47 |
| Msa1354500 | Msa1391220 | 0.853111 | 2.965417e-61 | -8.615850e-47 |
| Msa1354500 | Msa1391230 | 0.840348 | 9.177563e-58 | -8.615850e-47 |
| Msa1354500 | Msa1391240 | 0.948376 | 1.066422e-106 | -8.615850e-47 |
| Msa1354500 | Msa1394030 | 0.862807 | 3.901901e-64 | -8.615850e-47 |
| Msa1354500 | Msa1394040 | 0.838146 | 3.419203e-57 | -8.615850e-47 |
| Msa1354500 | Msa1394060 | 0.803833 | 2.886863e-49 | -8.615850e-47 |
| Msa1354500 | Msa1394080 | 0.807378 | 5.204545e-50 | -8.615850e-47 |
| Msa1354500 | Msa1394150 | 0.826061 | 3.334960e-54 | -8.615850e-47 |
| Msa1354500 | Msa1394160 | 0.860776 | 1.631182e-63 | -8.615850e-47 |
| Msa1354500 | Msa1394210 | 0.850123 | 2.081678e-60 | -8.615850e-47 |
| Msa1354500 | Msa1394250 | 0.816810 | 4.564722e-52 | -8.615850e-47 |
| Msa1354500 | Msa1460120 | 0.859532 | 3.875579e-63 | -8.615850e-47 |
| Msa1354500 | Msa1460130 | 0.863656 | 2.131156e-64 | -8.615850e-47 |
| Msa0689940 | Msa1354500 | 0.802579 | 5.246826e-49 | -8.615850e-47 |
| Msa0126730 | Msa1354500 | 0.815614 | 8.449045e-52 | -8.615850e-47 |
| Msa0126750 | Msa1354500 | 0.841638 | 4.207622e-58 | -8.615850e-47 |
| Msa0202640 | Msa1354500 | 0.858649 | 7.125984e-63 | -8.615850e-47 |
| Msa0221840 | Msa1354500 | 0.802679 | 5.003612e-49 | -8.615850e-47 |
| Msa1305090 | Msa1354500 | 0.841624 | 4.245189e-58 | -8.615850e-47 |
| Msa1342040 | Msa1354500 | 0.805976 | 1.028949e-49 | -8.615850e-47 |
| Msa0370210 | Msa1354500 | 0.807035 | 6.153450e-50 | -8.615850e-47 |
| Msa0405420 | Msa1354500 | 0.866477 | 2.771299e-65 | -8.615850e-47 |
| Msa0405430 | Msa1354500 | 0.861358 | 1.085377e-63 | -8.615850e-47 |
| Msa0405440 | Msa1354500 | 0.926066 | 7.808178e-91 | -8.615850e-47 |
| Msa0405510 | Msa1354500 | 0.861212 | 1.202432e-63 | -8.615850e-47 |
| Msa0405520 | Msa1354500 | 0.833612 | 4.825658e-56 | -8.615850e-47 |
| Msa0405530 | Msa1354500 | 0.945407 | 3.238289e-104 | -8.615850e-47 |
| Msa0983630 | Msa1354500 | 0.886649 | 2.846487e-72 | -8.615850e-47 |
| Msa0983640 | Msa1354500 | 0.843473 | 1.371274e-58 | -8.615850e-47 |
| Msa1022050 | Msa1354500 | 0.900718 | 5.533306e-78 | -8.615850e-47 |
| Msa1022060 | Msa1354500 | 0.836458 | 9.250109e-57 | -8.615850e-47 |
| Msa1064410 | Msa1354500 | 0.877572 | 5.642786e-69 | -8.615850e-47 |
| Msa1086080 | Msa1354500 | 0.812782 | 3.565570e-51 | -8.615850e-47 |
| Msa1086090 | Msa1354500 | 0.854338 | 1.315833e-61 | -8.615850e-47 |
| Msa1086140 | Msa1354500 | 0.850457 | 1.677505e-60 | -8.615850e-47 |
| Msa1086190 | Msa1354500 | 0.830133 | 3.486503e-55 | -8.615850e-47 |
| Msa1086200 | Msa1354500 | 0.869902 | 2.185059e-66 | -8.615850e-47 |
| Msa1086270 | Msa1354500 | 0.840234 | 9.829549e-58 | -8.615850e-47 |
| Msa1086300 | Msa1354500 | 0.816167 | 6.357678e-52 | -8.615850e-47 |
| Msa1086320 | Msa1354500 | 0.829695 | 4.458043e-55 | -8.615850e-47 |
| Msa1086380 | Msa1354500 | 0.805863 | 1.087072e-49 | -8.615850e-47 |
| Msa1086470 | Msa1354500 | 0.809996 | 1.435199e-50 | -8.615850e-47 |
| Msa1086490 | Msa1354500 | 0.805366 | 1.382079e-49 | -8.615850e-47 |
| Msa1086510 | Msa1354500 | 0.822786 | 1.965641e-53 | -8.615850e-47 |
| Msa1086550 | Msa1354500 | 0.831451 | 1.657128e-55 | -8.615850e-47 |
| Msa1086590 | Msa1354500 | 0.811543 | 6.642189e-51 | -8.615850e-47 |
| Msa1086600 | Msa1354500 | 0.873754 | 1.150295e-67 | -8.615850e-47 |
| Msa1086670 | Msa1354500 | 0.820863 | 5.477859e-53 | -8.615850e-47 |
| Msa1086680 | Msa1354500 | 0.814509 | 1.486058e-51 | -8.615850e-47 |
| Msa1086720 | Msa1354500 | 0.866071 | 3.727552e-65 | -8.615850e-47 |
| Msa1086730 | Msa1354500 | 0.882076 | 1.411027e-70 | -8.615850e-47 |
| Msa1086740 | Msa1354500 | 0.956575 | 2.132509e-114 | -8.615850e-47 |
| Msa1086790 | Msa1354500 | 0.916782 | 1.176611e-85 | -8.615850e-47 |
| Msa1086800 | Msa1354500 | 0.857038 | 2.143043e-62 | -8.615850e-47 |
| Msa1086860 | Msa1354500 | 0.807301 | 5.405415e-50 | -8.615850e-47 |
| Msa1086890 | Msa1354500 | 0.822295 | 2.557135e-53 | -8.615850e-47 |
| Msa1086900 | Msa1354500 | 0.856456 | 3.178034e-62 | -8.615850e-47 |
| Msa1086960 | Msa1354500 | 0.935422 | 8.701348e-97 | -8.615850e-47 |
| Msa1086970 | Msa1354500 | 0.835090 | 2.054826e-56 | -8.615850e-47 |
| Msa1087030 | Msa1354500 | 0.856184 | 3.818070e-62 | -8.615850e-47 |
| Msa1087040 | Msa1354500 | 0.863759 | 1.978612e-64 | -8.615850e-47 |
| Msa1087050 | Msa1354500 | 0.946984 | 1.621146e-105 | -8.615850e-47 |
| Msa1087110 | Msa1354500 | 0.935383 | 9.243786e-97 | -8.615850e-47 |
| Msa1087120 | Msa1354500 | 0.832767 | 7.835298e-56 | -8.615850e-47 |
| Msa1091700 | Msa1354500 | 0.812472 | 4.167067e-51 | -8.615850e-47 |
| Msa0263770 | Msa1354500 | 0.878073 | 3.772277e-69 | -8.615850e-47 |
| Msa0268170 | Msa1354500 | 0.801781 | 7.658371e-49 | -8.615850e-47 |
| Msa0268190 | Msa1354500 | 0.819571 | 1.082816e-52 | -8.615850e-47 |
| Msa0268210 | Msa1354500 | 0.841186 | 5.535698e-58 | -8.615850e-47 |
| Msa0268250 | Msa1354500 | 0.835847 | 1.322326e-56 | -8.615850e-47 |
| Msa0268260 | Msa1354500 | 0.843192 | 1.630000e-58 | -8.615850e-47 |
| Msa0268270 | Msa1354500 | 0.941086 | 7.653391e-101 | -8.615850e-47 |
| Msa0268300 | Msa1354500 | 0.886747 | 2.611945e-72 | -8.615850e-47 |
| Msa0268310 | Msa1354500 | 0.840564 | 8.060928e-58 | -8.615850e-47 |
| Msa0268410 | Msa1354500 | 0.802442 | 5.600563e-49 | -8.615850e-47 |
| Msa0268430 | Msa1354500 | 0.830341 | 3.101593e-55 | -8.615850e-47 |
| Msa0268450 | Msa1354500 | 0.835520 | 1.600048e-56 | -8.615850e-47 |
| Msa0268530 | Msa1354500 | 0.801533 | 8.609306e-49 | -8.615850e-47 |
| Msa0268550 | Msa1354500 | 0.804691 | 1.912685e-49 | -8.615850e-47 |
| Msa0268560 | Msa1354500 | 0.820649 | 6.134514e-53 | -8.615850e-47 |
| Msa0268570 | Msa1354500 | 0.852621 | 4.092698e-61 | -8.615850e-47 |
| Msa0268580 | Msa1354500 | 0.806527 | 7.877557e-50 | -8.615850e-47 |
| Msa0268630 | Msa1354500 | 0.840376 | 9.026817e-58 | -8.615850e-47 |
| Msa0268660 | Msa1354500 | 0.813206 | 2.877757e-51 | -8.615850e-47 |
| Msa0268670 | Msa1354500 | 0.833599 | 4.861410e-56 | -8.615850e-47 |
| Msa0268740 | Msa1354500 | 0.831648 | 1.481852e-55 | -8.615850e-47 |
| Msa0268750 | Msa1354500 | 0.862964 | 3.490198e-64 | -8.615850e-47 |
| Msa0268830 | Msa1354500 | 0.866131 | 3.568467e-65 | -8.615850e-47 |
| Msa0268840 | Msa1354500 | 0.806541 | 7.824147e-50 | -8.615850e-47 |
| Msa0268860 | Msa1354500 | 0.824751 | 6.811707e-54 | -8.615850e-47 |
| Msa0268880 | Msa1354500 | 0.824164 | 9.362737e-54 | -8.615850e-47 |
| Msa0268940 | Msa1354500 | 0.800639 | 1.311770e-48 | -8.615850e-47 |
| Msa0268950 | Msa1354500 | 0.821034 | 5.003061e-53 | -8.615850e-47 |
| Msa0268960 | Msa1354500 | 0.866120 | 3.595753e-65 | -8.615850e-47 |
| Msa0269040 | Msa1354500 | 0.861644 | 8.877322e-64 | -8.615850e-47 |
| Msa0269050 | Msa1354500 | 0.811270 | 7.612931e-51 | -8.615850e-47 |
| Msa0269070 | Msa1354500 | 0.826253 | 3.002235e-54 | -8.615850e-47 |
| Msa0269090 | Msa1354500 | 0.817391 | 3.379718e-52 | -8.615850e-47 |
| Msa0269130 | Msa1354500 | 0.812817 | 3.503351e-51 | -8.615850e-47 |
| Msa0269140 | Msa1354500 | 0.869985 | 2.053824e-66 | -8.615850e-47 |
| Msa0269150 | Msa1354500 | 0.971888 | 7.054192e-134 | -8.615850e-47 |
| Msa0344180 | Msa1354500 | 0.801710 | 7.917769e-49 | -8.615850e-47 |
| Msa0344190 | Msa1354500 | 0.816271 | 6.026318e-52 | -8.615850e-47 |
| Msa0344310 | Msa1354500 | 0.839903 | 1.199636e-57 | -8.615850e-47 |
| Msa1143120 | Msa1354500 | 0.858438 | 8.238330e-63 | -8.615850e-47 |
| Msa1143160 | Msa1354500 | 0.802738 | 4.865331e-49 | -8.615850e-47 |
| Msa1143170 | Msa1354500 | 0.844109 | 9.265679e-59 | -8.615850e-47 |
| Msa0484040 | Msa1354500 | 0.829424 | 5.187378e-55 | -8.615850e-47 |
| Msa0582510 | Msa1354500 | 0.856970 | 2.243357e-62 | -8.615850e-47 |
| Msa0582540 | Msa1354500 | 0.818529 | 1.869389e-52 | -8.615850e-47 |
| Msa0582640 | Msa1354500 | 0.828707 | 7.740902e-55 | -8.615850e-47 |
| Msa0582650 | Msa1354500 | 0.850591 | 1.538236e-60 | -8.615850e-47 |
| Msa0582690 | Msa1354500 | 0.861037 | 1.358964e-63 | -8.615850e-47 |
| Msa0582720 | Msa1354500 | 0.804939 | 1.698024e-49 | -8.615850e-47 |
| Msa0582730 | Msa1354500 | 0.816313 | 5.897760e-52 | -8.615850e-47 |
| Msa0582760 | Msa1354500 | 0.829648 | 4.577356e-55 | -8.615850e-47 |
| Msa0582770 | Msa1354500 | 0.856396 | 3.310780e-62 | -8.615850e-47 |
| Msa0582810 | Msa1354500 | 0.868438 | 6.527312e-66 | -8.615850e-47 |
| Msa0582840 | Msa1354500 | 0.822360 | 2.469283e-53 | -8.615850e-47 |
| Msa0582910 | Msa1354500 | 0.822844 | 1.905402e-53 | -8.615850e-47 |
| Msa0582920 | Msa1354500 | 0.857629 | 1.432811e-62 | -8.615850e-47 |
| Msa0591270 | Msa1354500 | 0.806316 | 8.728276e-50 | -8.615850e-47 |
| Msa0591290 | Msa1354500 | 0.808083 | 3.686581e-50 | -8.615850e-47 |
| Msa0591310 | Msa1354500 | 0.859610 | 3.670840e-63 | -8.615850e-47 |
| Msa0591350 | Msa1354500 | 0.912345 | 2.166475e-83 | -8.615850e-47 |
| Msa0591360 | Msa1354500 | 0.835701 | 1.439486e-56 | -8.615850e-47 |
| Msa0591380 | Msa1354500 | 0.835445 | 1.671331e-56 | -8.615850e-47 |
| Msa0867680 | Msa1354500 | 0.883932 | 2.952065e-71 | -8.615850e-47 |
| Msa0867690 | Msa1354500 | 0.853064 | 3.059383e-61 | -8.615850e-47 |
| Msa0876520 | Msa1354500 | 0.858271 | 9.236365e-63 | -8.615850e-47 |
| Msa0908220 | Msa1354500 | 0.852953 | 3.291697e-61 | -8.615850e-47 |
| Msa0908230 | Msa1354500 | 0.878674 | 2.319155e-69 | -8.615850e-47 |
| Msa0908240 | Msa1354500 | 0.960305 | 2.084242e-118 | -8.615850e-47 |
| Msa0908310 | Msa1354500 | 0.899879 | 1.279315e-77 | -8.615850e-47 |
| Msa0908320 | Msa1354500 | 0.851196 | 1.038708e-60 | -8.615850e-47 |
| Msa0908370 | Msa1354500 | 0.907136 | 7.016669e-81 | -8.615850e-47 |
| Msa0908380 | Msa1354500 | 0.834337 | 3.178262e-56 | -8.615850e-47 |
| Msa0908430 | Msa1354500 | 0.867465 | 1.341984e-65 | -8.615850e-47 |
| Msa0908440 | Msa1354500 | 0.887651 | 1.183722e-72 | -8.615850e-47 |
| Msa0908450 | Msa1354500 | 0.955616 | 2.013051e-113 | -8.615850e-47 |
| Msa0908480 | Msa1354500 | 0.878432 | 2.821358e-69 | -8.615850e-47 |
| Msa0908530 | Msa1354500 | 0.918247 | 1.972428e-86 | -8.615850e-47 |
| Msa0908540 | Msa1354500 | 0.850083 | 2.135917e-60 | -8.615850e-47 |
| Msa0908590 | Msa1354500 | 0.849748 | 2.649026e-60 | -8.615850e-47 |
| Msa0908600 | Msa1354500 | 0.841626 | 4.240314e-58 | -8.615850e-47 |
| Msa0908610 | Msa1354500 | 0.947089 | 1.323323e-105 | -8.615850e-47 |
| Msa0908650 | Msa1354500 | 0.844645 | 6.651917e-59 | -8.615850e-47 |
| Msa0908660 | Msa1354500 | 0.845757 | 3.327930e-59 | -8.615850e-47 |
| Msa0908670 | Msa1354500 | 0.949123 | 2.401150e-107 | -8.615850e-47 |
| Msa0908720 | Msa1354500 | 0.900502 | 6.869872e-78 | -8.615850e-47 |
| Msa0908730 | Msa1354500 | 0.833971 | 3.923529e-56 | -8.615850e-47 |
| Msa0911190 | Msa1354500 | 0.926414 | 4.848988e-91 | -8.615850e-47 |
| Msa0911200 | Msa1354500 | 0.845587 | 3.700108e-59 | -8.615850e-47 |
| Msa0911230 | Msa1354500 | 0.895090 | 1.333551e-75 | -8.615850e-47 |
| Msa0924830 | Msa1354500 | 0.851472 | 8.679354e-61 | -8.615850e-47 |
| Msa0924870 | Msa1354500 | 0.807172 | 5.755009e-50 | -8.615850e-47 |
| Msa0924880 | Msa1354500 | 0.853343 | 2.545048e-61 | -8.615850e-47 |
| Msa0924920 | Msa1354500 | 0.893615 | 5.330211e-75 | -8.615850e-47 |
| Msa0924930 | Msa1354500 | 0.855248 | 7.166107e-62 | -8.615850e-47 |
| Msa0924940 | Msa1354500 | 0.858671 | 7.020100e-63 | -8.615850e-47 |
| Msa0925100 | Msa1354500 | 0.927875 | 6.382050e-92 | -8.615850e-47 |
| Msa0925110 | Msa1354500 | 0.884442 | 1.911810e-71 | -8.615850e-47 |
| Msa0931070 | Msa1354500 | 0.845626 | 3.612336e-59 | -8.615850e-47 |
| Msa0931110 | Msa1354500 | 0.815398 | 9.434578e-52 | -8.615850e-47 |
| Msa0931130 | Msa1354500 | 0.855364 | 6.631273e-62 | -8.615850e-47 |
| Msa0931160 | Msa1354500 | 0.811952 | 5.412542e-51 | -8.615850e-47 |
| Msa0931220 | Msa1354500 | 0.814945 | 1.189583e-51 | -8.615850e-47 |
| Msa0931230 | Msa1354500 | 0.842279 | 2.848776e-58 | -8.615850e-47 |
| Msa0931260 | Msa1354500 | 0.868008 | 8.979652e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354500 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1354500 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354500 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354500 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354500 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1354500 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0014543:+302099 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0014543:-302132 | Msa1354500:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0014543:+302250 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0014543:-303094 | Msa1354500:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0014543:+302160 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0014543:+302330 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0014543:-302131 | Msa1354500:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0014543:+302133 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0014543:+302260 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0014543:-302234 | Msa1354500:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0014543:-303300 | Msa1354500:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0014543:+303425 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0014543:-302306 | Msa1354500:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0014543:+303102 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0014543:-302273 | Msa1354500:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0014543:+303451 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0014543:+302161 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0014543:-302160 | Msa1354500:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0014543:+303437 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0014543:-303493 | Msa1354500:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0014543:-303480 | Msa1354500:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0014543:+302320 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0014543:-302233 | Msa1354500:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0014543:-302394 | Msa1354500:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0014543:+302305 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0014543:-302279 | Msa1354500:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0014543:-302186 | Msa1354500:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0014543:+303452 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0014543:-303086 | Msa1354500:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0014543:-302232 | Msa1354500:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0014543:-302147 | Msa1354500:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0014543:+302261 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0014543:-302168 | Msa1354500:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0014543:+302290 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0014543:+303112 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0014543:-302130 | Msa1354500:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0014543:-302210 | Msa1354500:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0014543:-302231 | Msa1354500:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0014543:+302192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:302256-302275 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:302257-302276 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:302260-302279 | Msa1354500:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:302256-302275 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:302257-302276 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:302260-302279 | Msa1354500:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:302696-302715 | Msa1354500:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:302696-302715 | Msa1354500:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:302438-302457 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:303057-303076 | Msa1354500:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:303102-303121 | Msa1354500:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:302438-302457 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:303057-303076 | Msa1354500:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:303102-303121 | Msa1354500:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:302216-302235 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:302217-302236 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:302336-302355 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:302337-302356 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:302338-302357 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:302439-302458 | Msa1354500:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:302444-302463 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:302581-302600 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:302804-302823 | Msa1354500:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:302880-302899 | Msa1354500:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:302881-302900 | Msa1354500:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:302948-302967 | Msa1354500:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:302958-302977 | Msa1354500:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:303021-303040 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:303103-303122 | Msa1354500:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:303157-303176 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:303357-303376 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:302216-302235 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:302217-302236 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:302336-302355 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:302337-302356 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:302338-302357 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:302439-302458 | Msa1354500:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:302444-302463 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:302581-302600 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:302804-302823 | Msa1354500:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:302880-302899 | Msa1354500:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:302881-302900 | Msa1354500:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:302948-302967 | Msa1354500:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:302958-302977 | Msa1354500:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:303021-303040 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:303103-303122 | Msa1354500:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:303157-303176 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:303357-303376 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:302211-302230 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:302250-302269 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:302304-302323 | Msa1354500:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:302381-302400 | Msa1354500:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:302937-302956 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:302938-302957 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:302936-302955 | Msa1354500:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:302953-302972 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:302951-302970 | Msa1354500:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:302957-302976 | Msa1354500:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:303347-303366 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:303371-303390 | Msa1354500:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:303473-303492 | Msa1354500:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:302211-302230 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:302250-302269 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:302304-302323 | Msa1354500:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:302381-302400 | Msa1354500:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:302937-302956 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:302938-302957 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:302936-302955 | Msa1354500:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:302953-302972 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:302951-302970 | Msa1354500:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:302957-302976 | Msa1354500:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:303347-303366 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:303371-303390 | Msa1354500:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:303473-303492 | Msa1354500:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:302249-302268 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:302368-302387 | Msa1354500:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:302374-302393 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:302472-302491 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:302735-302754 | Msa1354500:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:302763-302782 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:302935-302954 | Msa1354500:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:303159-303178 | Msa1354500:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:303187-303206 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:303189-303208 | Msa1354500:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:303257-303276 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:303267-303286 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:303268-303287 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:303325-303344 | Msa1354500:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:303346-303365 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:303370-303389 | Msa1354500:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:303372-303391 | Msa1354500:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:303474-303493 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:303472-303491 | Msa1354500:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:303474-303493 | Msa1354500:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:302249-302268 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:302368-302387 | Msa1354500:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:302374-302393 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:302472-302491 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:302735-302754 | Msa1354500:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:302763-302782 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:302935-302954 | Msa1354500:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:303159-303178 | Msa1354500:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:303187-303206 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:303189-303208 | Msa1354500:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:303257-303276 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:303267-303286 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:303268-303287 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:303325-303344 | Msa1354500:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:303346-303365 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:303370-303389 | Msa1354500:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:303372-303391 | Msa1354500:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:303474-303493 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:303472-303491 | Msa1354500:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:303474-303493 | Msa1354500:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:302124-302143 | Msa1354500:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:302155-302174 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:302170-302189 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:302175-302194 | Msa1354500:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:302182-302201 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:302248-302267 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:302367-302386 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:302421-302440 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:302425-302444 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:302546-302565 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:302545-302564 | Msa1354500:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:302893-302912 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:302914-302933 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:303107-303126 | Msa1354500:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:303266-303285 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:303277-303296 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:303287-303306 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:303317-303336 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:303331-303350 | Msa1354500:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:303373-303392 | Msa1354500:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:303415-303434 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:303418-303437 | Msa1354500:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:302124-302143 | Msa1354500:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:302155-302174 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:302170-302189 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:302175-302194 | Msa1354500:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:302182-302201 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:302248-302267 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:302367-302386 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:302421-302440 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:302425-302444 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:302546-302565 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:302545-302564 | Msa1354500:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:302893-302912 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:302914-302933 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:303107-303126 | Msa1354500:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:303266-303285 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:303277-303296 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:303287-303306 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:303317-303336 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:303331-303350 | Msa1354500:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:303373-303392 | Msa1354500:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:303415-303434 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:303418-303437 | Msa1354500:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:302156-302175 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:302247-302266 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:302459-302478 | Msa1354500:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:302463-302482 | Msa1354500:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:302469-302488 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:302517-302536 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:302518-302537 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:302519-302538 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:302518-302537 | Msa1354500:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:302864-302883 | Msa1354500:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:302968-302987 | Msa1354500:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:303112-303131 | Msa1354500:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:303129-303148 | Msa1354500:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:303202-303221 | Msa1354500:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:303377-303396 | Msa1354500:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:303378-303397 | Msa1354500:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:303394-303413 | Msa1354500:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:303446-303465 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:302156-302175 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:302247-302266 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:302459-302478 | Msa1354500:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:302463-302482 | Msa1354500:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:302469-302488 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:302517-302536 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:302518-302537 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:302519-302538 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:302518-302537 | Msa1354500:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:302864-302883 | Msa1354500:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:302968-302987 | Msa1354500:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:303112-303131 | Msa1354500:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:303129-303148 | Msa1354500:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:303202-303221 | Msa1354500:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:303377-303396 | Msa1354500:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:303378-303397 | Msa1354500:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:303394-303413 | Msa1354500:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:303446-303465 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:302246-302265 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:302896-302915 | Msa1354500:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:303171-303190 | Msa1354500:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:303210-303229 | Msa1354500:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:303302-303321 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:303384-303403 | Msa1354500:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:303447-303466 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:303444-303463 | Msa1354500:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:303457-303476 | Msa1354500:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:302246-302265 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:302896-302915 | Msa1354500:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:303171-303190 | Msa1354500:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:303210-303229 | Msa1354500:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:303302-303321 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:303384-303403 | Msa1354500:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:303447-303466 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:303444-303463 | Msa1354500:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:303457-303476 | Msa1354500:CDS | 50.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:302245-302264 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:302846-302865 | Msa1354500:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:302847-302866 | Msa1354500:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:302855-302874 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:303298-303317 | Msa1354500:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:303436-303455 | Msa1354500:intron | 55.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:302245-302264 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:302846-302865 | Msa1354500:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:302847-302866 | Msa1354500:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:302855-302874 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:303298-303317 | Msa1354500:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:303436-303455 | Msa1354500:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:302495-302514 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:302512-302531 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:302510-302529 | Msa1354500:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:302851-302870 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:302848-302867 | Msa1354500:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:302852-302871 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:302495-302514 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:302512-302531 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:302510-302529 | Msa1354500:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:302851-302870 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:302848-302867 | Msa1354500:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:302852-302871 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:302505-302524 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:302505-302524 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 302113 | 303513 | 302113 | ID=Msa1354500;Name=Msa1354500 |
| tig0014543 | mRNA | 302113 | 303513 | 302113 | ID=Msa1354500-mRNA-1;Parent=Msa1354500;Name=Msa1354500-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0014543 | exon | 303437 | 303513 | 303437 | ID=Msa1354500-mRNA-1:exon:9142;Parent=Msa1354500-mRNA-1 |
| tig0014543 | exon | 303301 | 303344 | 303301 | ID=Msa1354500-mRNA-1:exon:9141;Parent=Msa1354500-mRNA-1 |
| tig0014543 | exon | 303087 | 303145 | 303087 | ID=Msa1354500-mRNA-1:exon:9140;Parent=Msa1354500-mRNA-1 |
| tig0014543 | exon | 302113 | 302406 | 302113 | ID=Msa1354500-mRNA-1:exon:9139;Parent=Msa1354500-mRNA-1 |
| tig0014543 | CDS | 303437 | 303513 | 303437 | ID=Msa1354500-mRNA-1:cds;Parent=Msa1354500-mRNA-1 |
| tig0014543 | CDS | 303301 | 303344 | 303301 | ID=Msa1354500-mRNA-1:cds;Parent=Msa1354500-mRNA-1 |
| tig0014543 | CDS | 303087 | 303145 | 303087 | ID=Msa1354500-mRNA-1:cds;Parent=Msa1354500-mRNA-1 |
| tig0014543 | CDS | 302113 | 302406 | 302113 | ID=Msa1354500-mRNA-1:cds;Parent=Msa1354500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
