Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438470 | XP_003601522.1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438470 | sp|Q9SSE5|COL9_ARATH | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.24e-142 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438470 | G7J8U1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0438470 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0438470 | 0.920484 | 1.206712e-87 | -8.615850e-47 |
| Msa0127170 | Msa0438470 | 0.802393 | 5.731622e-49 | -8.615850e-47 |
| Msa0369210 | Msa0438470 | 0.824989 | 5.985106e-54 | -8.615850e-47 |
| Msa0387830 | Msa0438470 | 0.957650 | 1.622520e-115 | -8.615850e-47 |
| Msa0402210 | Msa0438470 | 0.815313 | 9.853462e-52 | -8.615850e-47 |
| Msa0420790 | Msa0438470 | 0.952108 | 4.914666e-110 | -8.615850e-47 |
| Msa0438470 | Msa0483770 | 0.828401 | 9.177644e-55 | -8.615850e-47 |
| Msa0438470 | Msa0512350 | 0.980874 | 3.082713e-151 | -8.615850e-47 |
| Msa0438470 | Msa0550130 | 0.839409 | 1.611977e-57 | -8.615850e-47 |
| Msa0438470 | Msa0550150 | 0.806665 | 7.368371e-50 | -8.615850e-47 |
| Msa0438470 | Msa0574910 | 0.919379 | 4.846699e-87 | -8.615850e-47 |
| Msa0438470 | Msa0605640 | 0.807092 | 5.983725e-50 | -8.615850e-47 |
| Msa0438470 | Msa0646580 | 0.807275 | 5.473852e-50 | -8.615850e-47 |
| Msa0438470 | Msa0686220 | 0.801934 | 7.123025e-49 | -8.615850e-47 |
| Msa0438470 | Msa0686230 | 0.817034 | 4.065491e-52 | -8.615850e-47 |
| Msa0438470 | Msa0699370 | 0.808411 | 3.138722e-50 | -8.615850e-47 |
| Msa0438470 | Msa0837930 | -0.807137 | 5.852920e-50 | -8.615850e-47 |
| Msa0438470 | Msa0867720 | 0.847942 | 8.404960e-60 | -8.615850e-47 |
| Msa0438470 | Msa0867730 | 0.800542 | 1.372360e-48 | -8.615850e-47 |
| Msa0438470 | Msa0930760 | 0.925309 | 2.185634e-90 | -8.615850e-47 |
| Msa0438470 | Msa1039820 | 0.814649 | 1.383696e-51 | -8.615850e-47 |
| Msa0438470 | Msa1128260 | 0.827624 | 1.411910e-54 | -8.615850e-47 |
| Msa0438470 | Msa1130820 | -0.877223 | 7.466976e-69 | -8.615850e-47 |
| Msa0438470 | Msa1212190 | 0.872565 | 2.883972e-67 | -8.615850e-47 |
| Msa0438470 | Msa1212270 | 0.876580 | 1.247429e-68 | -8.615850e-47 |
| Msa0438470 | Msa1259910 | 0.873436 | 1.473202e-67 | -8.615850e-47 |
| Msa0438470 | Msa1406670 | -0.879278 | 1.420330e-69 | -8.615850e-47 |
| Msa0438470 | Msa1448870 | -0.876935 | 9.398455e-69 | -8.615850e-47 |
| Msa0355140 | Msa0438470 | 0.818719 | 1.692209e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438470 | MtrunA17_Chr3g0120711 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Msa0438470 | MtrunA17_Chr5g0429341 | 68.916 | 415 | 118 | 7 | 1 | 410 | 1 | 409 | 0.0 | 514 |
| Msa0438470 | MtrunA17_Chr2g0322941 | 51.818 | 110 | 52 | 1 | 1 | 110 | 40 | 148 | 8.10e-33 | 124 |
| Msa0438470 | MtrunA17_Chr7g0268691 | 48.544 | 103 | 53 | 0 | 5 | 107 | 20 | 122 | 1.84e-29 | 117 |
| Msa0438470 | MtrunA17_Chr7g0268691 | 62.500 | 48 | 18 | 0 | 348 | 395 | 322 | 369 | 7.35e-12 | 66.6 |
| Msa0438470 | MtrunA17_Chr1g0209071 | 44.860 | 107 | 57 | 1 | 1 | 107 | 1 | 105 | 1.03e-24 | 103 |
| Msa0438470 | MtrunA17_Chr2g0322951 | 49.550 | 111 | 40 | 3 | 303 | 405 | 41 | 143 | 1.45e-24 | 98.6 |
| Msa0438470 | MtrunA17_Chr7g0251781 | 35.971 | 139 | 81 | 2 | 1 | 132 | 1 | 138 | 9.29e-22 | 96.3 |
| Msa0438470 | MtrunA17_Chr7g0251781 | 56.061 | 66 | 29 | 0 | 331 | 396 | 318 | 383 | 1.34e-14 | 75.1 |
| Msa0438470 | MtrunA17_Chr1g0150471 | 44.048 | 84 | 46 | 1 | 4 | 86 | 5 | 88 | 4.71e-17 | 81.6 |
| Msa0438470 | MtrunA17_Chr3g0136701 | 39.216 | 102 | 61 | 1 | 4 | 104 | 5 | 106 | 4.19e-16 | 78.2 |
| Msa0438470 | MtrunA17_Chr3g0136701 | 45.833 | 72 | 36 | 1 | 333 | 401 | 208 | 279 | 3.44e-11 | 63.5 |
| Msa0438470 | MtrunA17_Chr4g0072871 | 38.889 | 90 | 54 | 1 | 4 | 92 | 21 | 110 | 4.02e-15 | 76.3 |
| Msa0438470 | MtrunA17_Chr7g0220721 | 41.758 | 91 | 52 | 1 | 5 | 94 | 26 | 116 | 1.39e-14 | 75.1 |
| Msa0438470 | MtrunA17_Chr4g0033641 | 38.542 | 96 | 49 | 2 | 1 | 86 | 1 | 96 | 9.46e-14 | 70.5 |
| Msa0438470 | MtrunA17_Chr5g0405151 | 38.095 | 84 | 44 | 1 | 1 | 76 | 1 | 84 | 1.94e-11 | 62.8 |
| Msa0438470 | MtrunA17_Chr1g0155811 | 34.021 | 97 | 53 | 2 | 1 | 86 | 1 | 97 | 3.07e-11 | 63.5 |
| Msa0438470 | MtrunA17_Chr4g0035651 | 35.052 | 97 | 52 | 2 | 1 | 86 | 1 | 97 | 4.30e-11 | 62.4 |
| Msa0438470 | MtrunA17_Chr3g0142221 | 33.673 | 98 | 53 | 2 | 1 | 86 | 1 | 98 | 6.76e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438470 | AT3G07650.3 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0438470 | AT3G07650.2 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0438470 | AT3G07650.4 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0438470 | AT3G07650.1 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0438470 | AT5G48250.1 | 53.699 | 419 | 140 | 10 | 1 | 411 | 1 | 373 | 1.37e-140 | 406 |
| Msa0438470 | AT3G21880.3 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.21e-61 | 203 |
| Msa0438470 | AT3G21880.2 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.21e-61 | 203 |
| Msa0438470 | AT3G21880.1 | 34.063 | 411 | 210 | 11 | 5 | 408 | 5 | 361 | 2.28e-61 | 202 |
| Msa0438470 | AT4G15250.1 | 53.153 | 111 | 50 | 2 | 5 | 115 | 5 | 113 | 6.87e-34 | 129 |
| Msa0438470 | AT4G15250.1 | 51.020 | 98 | 45 | 1 | 307 | 404 | 232 | 326 | 8.63e-20 | 90.1 |
| Msa0438470 | AT2G33500.1 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 2.85e-30 | 120 |
| Msa0438470 | AT2G33500.1 | 60.784 | 51 | 20 | 0 | 346 | 396 | 349 | 399 | 1.43e-12 | 69.3 |
| Msa0438470 | AT2G33500.2 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 2.99e-30 | 120 |
| Msa0438470 | AT2G33500.2 | 60.784 | 51 | 20 | 0 | 346 | 396 | 348 | 398 | 1.42e-12 | 69.3 |
| Msa0438470 | AT1G28050.1 | 39.041 | 146 | 86 | 2 | 5 | 147 | 9 | 154 | 5.62e-29 | 117 |
| Msa0438470 | AT1G28050.1 | 61.111 | 54 | 21 | 0 | 346 | 399 | 377 | 430 | 4.42e-13 | 70.9 |
| Msa0438470 | AT1G68190.1 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 5.83e-29 | 116 |
| Msa0438470 | AT1G68190.3 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 5.83e-29 | 116 |
| Msa0438470 | AT1G68190.2 | 46.847 | 111 | 57 | 2 | 1 | 110 | 39 | 148 | 1.03e-28 | 116 |
| Msa0438470 | AT2G47890.2 | 35.795 | 176 | 103 | 4 | 4 | 177 | 12 | 179 | 8.86e-26 | 105 |
| Msa0438470 | AT2G47890.3 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 3.20e-25 | 105 |
| Msa0438470 | AT2G47890.1 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 4.10e-25 | 105 |
| Msa0438470 | AT5G24930.1 | 43.333 | 90 | 50 | 1 | 4 | 92 | 5 | 94 | 4.10e-17 | 82.8 |
| Msa0438470 | AT5G24930.1 | 55.769 | 52 | 23 | 0 | 344 | 395 | 285 | 336 | 3.22e-11 | 64.7 |
| Msa0438470 | AT2G24790.1 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 8.61e-16 | 77.8 |
| Msa0438470 | AT2G24790.1 | 50.877 | 57 | 28 | 0 | 347 | 403 | 222 | 278 | 5.18e-11 | 63.5 |
| Msa0438470 | AT2G24790.2 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 8.70e-16 | 76.6 |
| Msa0438470 | AT5G15840.1 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 9.50e-15 | 75.9 |
| Msa0438470 | AT5G15840.2 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 1.60e-14 | 73.9 |
| Msa0438470 | AT5G15850.1 | 44.186 | 86 | 47 | 1 | 5 | 89 | 12 | 97 | 2.49e-14 | 74.3 |
| Msa0438470 | AT3G02380.1 | 40.000 | 100 | 53 | 2 | 5 | 97 | 16 | 115 | 1.44e-13 | 72.0 |
| Msa0438470 | AT3G02380.1 | 62.500 | 48 | 18 | 0 | 348 | 395 | 272 | 319 | 5.26e-12 | 67.0 |
| Msa0438470 | AT5G57660.1 | 30.216 | 139 | 92 | 2 | 5 | 142 | 22 | 156 | 2.34e-12 | 68.2 |
| Msa0438470 | AT2G31380.1 | 36.458 | 96 | 51 | 2 | 1 | 86 | 1 | 96 | 2.45e-12 | 66.6 |
| Msa0438470 | AT1G06040.2 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 3.92e-12 | 65.1 |
| Msa0438470 | AT1G06040.1 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 4.27e-12 | 66.2 |
| Msa0438470 | AT2G21320.1 | 39.286 | 84 | 43 | 1 | 1 | 76 | 1 | 84 | 5.81e-11 | 61.6 |
| Msa0438470 | AT4G38960.1 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.10e-11 | 61.6 |
| Msa0438470 | AT4G38960.6 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.10e-11 | 61.6 |
| Msa0438470 | AT1G75540.1 | 34.343 | 99 | 52 | 2 | 1 | 86 | 1 | 99 | 8.86e-11 | 63.2 |
Find 92 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGATTTAACAGTTTATT+TGG | 0.095234 | 3_3:+2735017 | Msa0438470:CDS |
| GTGGATTTAACAGTTTATTT+GGG | 0.284402 | 3_3:+2735018 | Msa0438470:CDS |
| CGCGGTTCTTTGCTTGATTC+GGG | 0.298118 | 3_3:-2734572 | None:intergenic |
| AGCTACTGATCTACCTGATT+TGG | 0.310422 | 3_3:+2734520 | Msa0438470:CDS |
| TCATCATCATCACTTGCTTC+AGG | 0.322324 | 3_3:-2734888 | None:intergenic |
| ACGCGGTTCTTTGCTTGATT+CGG | 0.327280 | 3_3:-2734573 | None:intergenic |
| CGGCCGAACTTTCTTCGATA+TGG | 0.346888 | 3_3:+2734369 | Msa0438470:CDS |
| GGATGAAATGGATATAAATA+TGG | 0.347846 | 3_3:+2734935 | Msa0438470:CDS |
| CGATTTCGATATGGATGAAA+TGG | 0.355447 | 3_3:+2734923 | Msa0438470:CDS |
| TACCTTTGGTACACATTCAT+TGG | 0.361210 | 3_3:-2734621 | None:intergenic |
| GATGCTGCAGTGCTGCATGC+TGG | 0.368884 | 3_3:-2735519 | None:intergenic |
| TATGTTCAGGGTTCATCAAT+TGG | 0.370264 | 3_3:+2735477 | Msa0438470:intron |
| ATTATACACTCAGTAGCTTC+TGG | 0.377897 | 3_3:-2736284 | None:intergenic |
| ACCGGCCCTTCACGCGCCTT+CGG | 0.385614 | 3_3:-2736216 | None:intergenic |
| GATCGTTTGCCTCTTATGAT+TGG | 0.395417 | 3_3:-2734321 | None:intergenic |
| CACTTTGTCAGAATTGTGAT+TGG | 0.398736 | 3_3:+2734273 | Msa0438470:CDS |
| TTTGCTTGATTCGGGCTTTG+AGG | 0.401934 | 3_3:-2734564 | None:intergenic |
| ATGCAGTTCACAACCTGCTT+TGG | 0.404101 | 3_3:+2734226 | Msa0438470:CDS |
| GTTCACAACCTGCTTTGGTT+AGG | 0.412214 | 3_3:+2734231 | Msa0438470:CDS |
| TAGCTTCTGGTTTGGCTCAA+AGG | 0.415587 | 3_3:-2736271 | None:intergenic |
| ACACTCAGTAGCTTCTGGTT+TGG | 0.416653 | 3_3:-2736279 | None:intergenic |
| CATTCATTGGTAGATCCATC+TGG | 0.421154 | 3_3:-2734608 | None:intergenic |
| AGCTTCTTCAATGCTTCTCA+TGG | 0.422785 | 3_3:+2735668 | Msa0438470:CDS |
| AGCTTCTGGTTTGGCTCAAA+GGG | 0.425533 | 3_3:-2736270 | None:intergenic |
| CTACATCTTCCAATCATAAG+AGG | 0.437225 | 3_3:+2734312 | Msa0438470:CDS |
| CAGAAAAGGAAAGGCTCGAT+TGG | 0.437549 | 3_3:-2735602 | None:intergenic |
| GCTCAAAGGGTCATAATCAT+AGG | 0.437780 | 3_3:-2736257 | None:intergenic |
| AGCATTAGCATCTTGACAAT+TGG | 0.444014 | 3_3:-2735066 | None:intergenic |
| TGTCAGAATTGTGATTGGTT+AGG | 0.444655 | 3_3:+2734278 | Msa0438470:CDS |
| GCGAAAGACTTATCCAAATC+AGG | 0.451210 | 3_3:-2734533 | None:intergenic |
| TGTAGTTGTAGCTCATTCTC+AGG | 0.468722 | 3_3:-2735717 | None:intergenic |
| CATCATCATCACTTGCTTCA+GGG | 0.475636 | 3_3:-2734887 | None:intergenic |
| TCCGAAGGCGCGTGAAGGGC+CGG | 0.483385 | 3_3:+2736215 | Msa0438470:CDS |
| TTTGCAGTAATACAAAGATT+CGG | 0.484517 | 3_3:-2735573 | None:intergenic |
| GGGGCAAAAGCCATGTCTGC+TGG | 0.484909 | 3_3:+2735038 | Msa0438470:CDS |
| TAATGAGAATAGGAGTGCTT+GGG | 0.485947 | 3_3:+2734460 | Msa0438470:CDS |
| TTCTCATGGGAGAACCTCCT+TGG | 0.487490 | 3_3:+2735682 | Msa0438470:CDS |
| TCATGAGTATTAATGAGAAT+AGG | 0.491713 | 3_3:+2734450 | Msa0438470:CDS |
| TCTGTATGGCGATTTCGATA+TGG | 0.492638 | 3_3:+2734914 | Msa0438470:CDS |
| AGACCATATCGAAGAAAGTT+CGG | 0.494435 | 3_3:-2734372 | None:intergenic |
| GCTTCAGGGCAATTTGTAGC+AGG | 0.495109 | 3_3:-2734873 | None:intergenic |
| AGAAAAGGAAAGGCTCGATT+GGG | 0.501130 | 3_3:-2735601 | None:intergenic |
| TTAATGAGAATAGGAGTGCT+TGG | 0.501567 | 3_3:+2734459 | Msa0438470:CDS |
| ATTAATGAAGACGGTGGTGC+TGG | 0.505210 | 3_3:+2735627 | Msa0438470:CDS |
| GTCTTCATTAATACCAGAAA+AGG | 0.513355 | 3_3:-2735616 | None:intergenic |
| ATATGCCTCTCGCAAGGAAA+GGG | 0.514733 | 3_3:+2736186 | Msa0438470:CDS |
| CCCTTGCTCGAAGACATTCA+AGG | 0.516832 | 3_3:+2734186 | Msa0438470:CDS |
| TGATGTCCGAAGGCGCGTGA+AGG | 0.519956 | 3_3:+2736210 | Msa0438470:CDS |
| GTCATAATCATAGGCCTCGC+CGG | 0.520189 | 3_3:-2736248 | None:intergenic |
| CAAACGATCAATTGCTACTC+AGG | 0.524349 | 3_3:+2734335 | Msa0438470:CDS |
| CCTCGCCGGCTTTAACAAAC+CGG | 0.526175 | 3_3:-2736234 | None:intergenic |
| ACTACATGTGAGCAAGAACT+AGG | 0.526382 | 3_3:+2734425 | Msa0438470:CDS |
| TTGTGGAGATCAACGGTCCA+TGG | 0.528039 | 3_3:+2734097 | Msa0438470:CDS |
| TCCTTGAATGTCTTCGAGCA+AGG | 0.533062 | 3_3:-2734187 | None:intergenic |
| TTCGGGCTTTGAGGATGTAC+CGG | 0.533096 | 3_3:-2734555 | None:intergenic |
| GATGTCCGAAGGCGCGTGAA+GGG | 0.533693 | 3_3:+2736211 | Msa0438470:CDS |
| AAGGGCCGGTTTGTTAAAGC+CGG | 0.538044 | 3_3:+2736229 | Msa0438470:CDS |
| CGTATGCTCGACCGCCCAGA+TGG | 0.548257 | 3_3:+2734593 | Msa0438470:CDS |
| AATTGTGATTGGTTAGGTCA+TGG | 0.558365 | 3_3:+2734284 | Msa0438470:CDS |
| CTACTCAGGTTGCCCTTCGT+CGG | 0.563208 | 3_3:+2734349 | Msa0438470:CDS |
| GCTTCTTCAATGCTTCTCAT+GGG | 0.566506 | 3_3:+2735669 | Msa0438470:CDS |
| TCAGAACACCTAACCAAAGC+AGG | 0.567607 | 3_3:-2734239 | None:intergenic |
| ATTGGAATCTCCAGCAGACA+TGG | 0.567887 | 3_3:-2735048 | None:intergenic |
| AAGAAAGTTCGGCCGACGAA+GGG | 0.569995 | 3_3:-2734361 | None:intergenic |
| CATGTAGTTTCACTCAGAGA+AGG | 0.576596 | 3_3:-2734410 | None:intergenic |
| CAAACATAGACACGCTGCAT+CGG | 0.578296 | 3_3:-2734132 | None:intergenic |
| TAGTGCTGTTATGCGATACA+AGG | 0.579883 | 3_3:+2735755 | Msa0438470:CDS |
| TACCAATGAATGTGTACCAA+AGG | 0.580738 | 3_3:+2734619 | Msa0438470:CDS |
| CCTTGAATGTCTTCGAGCAA+GGG | 0.583830 | 3_3:-2734186 | None:intergenic |
| GATATGCCTCTCGCAAGGAA+AGG | 0.583865 | 3_3:+2736185 | Msa0438470:CDS |
| TGGATTTAACAGTTTATTTG+GGG | 0.588596 | 3_3:+2735019 | Msa0438470:CDS |
| GATTTGGATAAGTCTTTCGC+CGG | 0.589605 | 3_3:+2734536 | Msa0438470:CDS |
| CATTAATACCAGAAAAGGAA+AGG | 0.592524 | 3_3:-2735611 | None:intergenic |
| GAAGAAAGTTCGGCCGACGA+AGG | 0.593920 | 3_3:-2734362 | None:intergenic |
| AGGAAAGGGCTGATGTCCGA+AGG | 0.595717 | 3_3:+2736200 | Msa0438470:CDS |
| ATGTAGTTTCACTCAGAGAA+GGG | 0.599442 | 3_3:-2734409 | None:intergenic |
| ATCAGCCCTTTCCTTGCGAG+AGG | 0.604664 | 3_3:-2736191 | None:intergenic |
| ATTCATTGGTAGATCCATCT+GGG | 0.610627 | 3_3:-2734607 | None:intergenic |
| AAAGCTCTTCAGAATGAGTG+AGG | 0.617795 | 3_3:-2734986 | None:intergenic |
| GCTGGAGACTATCAAGATTG+TGG | 0.619737 | 3_3:+2735645 | Msa0438470:CDS |
| AGTGAGATATGCCTCTCGCA+AGG | 0.625277 | 3_3:+2736180 | Msa0438470:CDS |
| TCTGGTATTAATGAAGACGG+TGG | 0.629157 | 3_3:+2735621 | Msa0438470:CDS |
| CCGGTTTGTTAAAGCCGGCG+AGG | 0.638136 | 3_3:+2736234 | Msa0438470:CDS |
| TCAAGATGCTAATGCTGCTG+AGG | 0.640291 | 3_3:+2735073 | Msa0438470:CDS |
| TCTGGGCGGTCGAGCATACG+CGG | 0.641340 | 3_3:-2734590 | None:intergenic |
| TCAGGACAAGTGTTTAACCA+AGG | 0.666255 | 3_3:-2735699 | None:intergenic |
| AAGCTCTTCAGAATGAGTGA+GGG | 0.667176 | 3_3:-2734985 | None:intergenic |
| GGACAAGTGTTTAACCAAGG+AGG | 0.698616 | 3_3:-2735696 | None:intergenic |
| ATCGGAGCGGCAGTACACCA+TGG | 0.702100 | 3_3:-2734114 | None:intergenic |
| ATCGCATAACAGCACTACAG+CGG | 0.703445 | 3_3:-2735749 | None:intergenic |
| ATAGACACGCTGCATCGGAG+CGG | 0.713055 | 3_3:-2734127 | None:intergenic |
| CATTGGTAGATCCATCTGGG+CGG | 0.761162 | 3_3:-2734604 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_3:2734817-2734836 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_3:2736094-2736113 | Msa0438470:intron | 15.0% |
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_3:2734817-2734836 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_3:2736094-2736113 | Msa0438470:intron | 15.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_3:2735240-2735259 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_3:2735464-2735483 | Msa0438470:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_3:2735465-2735484 | Msa0438470:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_3:2735240-2735259 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_3:2735464-2735483 | Msa0438470:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_3:2735465-2735484 | Msa0438470:intron | 20.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_3:2734450-2734469 | Msa0438470:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_3:2734638-2734657 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_3:2734935-2734954 | Msa0438470:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_3:2735018-2735037 | Msa0438470:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_3:2735019-2735038 | Msa0438470:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_3:2735171-2735190 | Msa0438470:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_3:2735414-2735433 | Msa0438470:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_3:2735576-2735595 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_3:2735618-2735637 | Msa0438470:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_3:2735910-2735929 | Msa0438470:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_3:2735918-2735937 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_3:2735919-2735938 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_3:2735994-2736013 | None:intergenic | 25.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_3:2734450-2734469 | Msa0438470:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_3:2734638-2734657 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_3:2734935-2734954 | Msa0438470:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_3:2735018-2735037 | Msa0438470:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_3:2735019-2735038 | Msa0438470:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_3:2735171-2735190 | Msa0438470:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_3:2735414-2735433 | Msa0438470:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_3:2735576-2735595 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_3:2735618-2735637 | Msa0438470:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_3:2735910-2735929 | Msa0438470:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_3:2735918-2735937 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_3:2735919-2735938 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_3:2735994-2736013 | None:intergenic | 25.0% |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_3:2734080-2734099 | Msa0438470:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_3:2734712-2734731 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_3:2734712-2734731 | Msa0438470:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_3:2734796-2734815 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_3:2734957-2734976 | Msa0438470:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_3:2734962-2734981 | Msa0438470:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_3:2734996-2735015 | Msa0438470:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_3:2735017-2735036 | Msa0438470:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_3:2735137-2735156 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_3:2735137-2735156 | Msa0438470:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_3:2735275-2735294 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_3:2735553-2735572 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_3:2735614-2735633 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_3:2735619-2735638 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_3:2735853-2735872 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_3:2735871-2735890 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_3:2735935-2735954 | Msa0438470:intron | 30.0% | |
| TGCTAACAAGTTAGGAATTA+CGG | + | chr3_3:2736019-2736038 | Msa0438470:intron | 30.0% | |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_3:2734080-2734099 | Msa0438470:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_3:2734712-2734731 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_3:2734712-2734731 | Msa0438470:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_3:2734796-2734815 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_3:2734957-2734976 | Msa0438470:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_3:2734962-2734981 | Msa0438470:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_3:2734996-2735015 | Msa0438470:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_3:2735017-2735036 | Msa0438470:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_3:2735137-2735156 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_3:2735137-2735156 | Msa0438470:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_3:2735275-2735294 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_3:2735553-2735572 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_3:2735614-2735633 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_3:2735619-2735638 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_3:2735853-2735872 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_3:2735871-2735890 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_3:2735935-2735954 | Msa0438470:intron | 30.0% | |
| TGCTAACAAGTTAGGAATTA+CGG | + | chr3_3:2736019-2736038 | Msa0438470:intron | 30.0% | |
| ! | GTGATTTTTGTGGAGATCAA+CGG | + | chr3_3:2734090-2734109 | Msa0438470:CDS | 35.0% |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_3:2734273-2734292 | Msa0438470:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_3:2734278-2734297 | Msa0438470:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_3:2734284-2734303 | Msa0438470:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_3:2734312-2734331 | Msa0438470:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_3:2734375-2734394 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_3:2734412-2734431 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_3:2734459-2734478 | Msa0438470:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_3:2734460-2734479 | Msa0438470:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_3:2734491-2734510 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_3:2734610-2734629 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_3:2734619-2734638 | Msa0438470:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_3:2734624-2734643 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_3:2734842-2734861 | Msa0438470:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_3:2734900-2734919 | Msa0438470:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_3:2734923-2734942 | Msa0438470:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_3:2734999-2735018 | Msa0438470:CDS | 35.0% |
| AGCATTAGCATCTTGACAAT+TGG | - | chr3_3:2735069-2735088 | None:intergenic | 35.0% | |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_3:2735264-2735283 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_3:2735375-2735394 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_3:2735376-2735395 | Msa0438470:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_3:2735433-2735452 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_3:2735477-2735496 | Msa0438470:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_3:2735877-2735896 | Msa0438470:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_3:2735878-2735897 | Msa0438470:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_3:2735957-2735976 | Msa0438470:intron | 35.0% | |
| !! | TCCTAACTTGTTAGCAAAGA+CGG | - | chr3_3:2736015-2736034 | None:intergenic | 35.0% |
| GCTAACAAGTTAGGAATTAC+GGG | + | chr3_3:2736020-2736039 | Msa0438470:intron | 35.0% | |
| ! | GTGATTTTTGTGGAGATCAA+CGG | + | chr3_3:2734090-2734109 | Msa0438470:CDS | 35.0% |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_3:2734273-2734292 | Msa0438470:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_3:2734278-2734297 | Msa0438470:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_3:2734284-2734303 | Msa0438470:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_3:2734312-2734331 | Msa0438470:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_3:2734375-2734394 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_3:2734412-2734431 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_3:2734459-2734478 | Msa0438470:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_3:2734460-2734479 | Msa0438470:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_3:2734491-2734510 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_3:2734610-2734629 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_3:2734619-2734638 | Msa0438470:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_3:2734624-2734643 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_3:2734842-2734861 | Msa0438470:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_3:2734900-2734919 | Msa0438470:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_3:2734923-2734942 | Msa0438470:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_3:2734999-2735018 | Msa0438470:CDS | 35.0% |
| AGCATTAGCATCTTGACAAT+TGG | - | chr3_3:2735069-2735088 | None:intergenic | 35.0% | |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_3:2735264-2735283 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_3:2735375-2735394 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_3:2735376-2735395 | Msa0438470:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_3:2735433-2735452 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_3:2735477-2735496 | Msa0438470:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_3:2735877-2735896 | Msa0438470:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_3:2735878-2735897 | Msa0438470:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_3:2735957-2735976 | Msa0438470:intron | 35.0% | |
| !! | TCCTAACTTGTTAGCAAAGA+CGG | - | chr3_3:2736015-2736034 | None:intergenic | 35.0% |
| GCTAACAAGTTAGGAATTAC+GGG | + | chr3_3:2736020-2736039 | Msa0438470:intron | 35.0% | |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_3:2734324-2734343 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_3:2734335-2734354 | Msa0438470:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_3:2734413-2734432 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_3:2734425-2734444 | Msa0438470:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_3:2734520-2734539 | Msa0438470:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_3:2734536-2734555 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_3:2734536-2734555 | Msa0438470:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_3:2734611-2734630 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_3:2734777-2734796 | Msa0438470:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_3:2734890-2734909 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_3:2734891-2734910 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_3:2734914-2734933 | Msa0438470:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_3:2734988-2735007 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_3:2734989-2735008 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_3:2735604-2735623 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_3:2735621-2735640 | Msa0438470:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_3:2735668-2735687 | Msa0438470:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_3:2735669-2735688 | Msa0438470:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_3:2735702-2735721 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_3:2735720-2735739 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_3:2735755-2735774 | Msa0438470:CDS | 40.0% |
| ACCGTCTTTGCTAACAAGTT+AGG | + | chr3_3:2736011-2736030 | Msa0438470:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_3:2736260-2736279 | None:intergenic | 40.0% | |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_3:2734324-2734343 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_3:2734335-2734354 | Msa0438470:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_3:2734413-2734432 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_3:2734425-2734444 | Msa0438470:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_3:2734520-2734539 | Msa0438470:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_3:2734536-2734555 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_3:2734536-2734555 | Msa0438470:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_3:2734611-2734630 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_3:2734777-2734796 | Msa0438470:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_3:2734890-2734909 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_3:2734891-2734910 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_3:2734914-2734933 | Msa0438470:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_3:2734988-2735007 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_3:2734989-2735008 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_3:2735604-2735623 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_3:2735621-2735640 | Msa0438470:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_3:2735668-2735687 | Msa0438470:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_3:2735669-2735688 | Msa0438470:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_3:2735702-2735721 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_3:2735720-2735739 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_3:2735755-2735774 | Msa0438470:CDS | 40.0% |
| ACCGTCTTTGCTAACAAGTT+AGG | + | chr3_3:2736011-2736030 | Msa0438470:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_3:2736260-2736279 | None:intergenic | 40.0% | |
| CAAACATAGACACGCTGCAT+CGG | - | chr3_3:2734135-2734154 | None:intergenic | 45.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_3:2734189-2734208 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_3:2734190-2734209 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_3:2734226-2734245 | Msa0438470:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_3:2734231-2734250 | Msa0438470:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_3:2734242-2734261 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_3:2734567-2734586 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_3:2734576-2734595 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_3:2734721-2734740 | Msa0438470:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_3:2734863-2734882 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_3:2735051-2735070 | None:intergenic | 45.0% | |
| TCAAGATGCTAATGCTGCTG+AGG | + | chr3_3:2735073-2735092 | Msa0438470:CDS | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_3:2735184-2735203 | Msa0438470:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_3:2735185-2735204 | Msa0438470:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_3:2735196-2735215 | Msa0438470:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_3:2735605-2735624 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_3:2735603-2735622 | Msa0438470:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_3:2735627-2735646 | Msa0438470:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_3:2735645-2735664 | Msa0438470:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_3:2735699-2735718 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_3:2735752-2735771 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_3:2735881-2735900 | Msa0438470:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_3:2735882-2735901 | Msa0438470:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_3:2735883-2735902 | Msa0438470:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_3:2736186-2736205 | Msa0438470:CDS | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_3:2736273-2736292 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_3:2736274-2736293 | None:intergenic | 45.0% |
| CAAACATAGACACGCTGCAT+CGG | - | chr3_3:2734135-2734154 | None:intergenic | 45.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_3:2734189-2734208 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_3:2734190-2734209 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_3:2734226-2734245 | Msa0438470:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_3:2734231-2734250 | Msa0438470:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_3:2734242-2734261 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_3:2734567-2734586 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_3:2734576-2734595 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_3:2734721-2734740 | Msa0438470:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_3:2734863-2734882 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_3:2735051-2735070 | None:intergenic | 45.0% | |
| TCAAGATGCTAATGCTGCTG+AGG | + | chr3_3:2735073-2735092 | Msa0438470:CDS | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_3:2735184-2735203 | Msa0438470:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_3:2735185-2735204 | Msa0438470:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_3:2735196-2735215 | Msa0438470:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_3:2735605-2735624 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_3:2735603-2735622 | Msa0438470:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_3:2735627-2735646 | Msa0438470:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_3:2735645-2735664 | Msa0438470:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_3:2735699-2735718 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_3:2735752-2735771 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_3:2735881-2735900 | Msa0438470:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_3:2735882-2735901 | Msa0438470:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_3:2735883-2735902 | Msa0438470:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_3:2736186-2736205 | Msa0438470:CDS | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_3:2736273-2736292 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_3:2736274-2736293 | None:intergenic | 45.0% |
| TTGTGGAGATCAACGGTCCA+TGG | + | chr3_3:2734097-2734116 | Msa0438470:CDS | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_3:2734186-2734205 | Msa0438470:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_3:2734364-2734383 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_3:2734369-2734388 | Msa0438470:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_3:2734558-2734577 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_3:2734575-2734594 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_3:2734607-2734626 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_3:2734876-2734895 | None:intergenic | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_3:2735682-2735701 | Msa0438470:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_3:2736180-2736199 | Msa0438470:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_3:2736185-2736204 | Msa0438470:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_3:2736229-2736248 | Msa0438470:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_3:2736251-2736270 | None:intergenic | 50.0% | |
| TTGTGGAGATCAACGGTCCA+TGG | + | chr3_3:2734097-2734116 | Msa0438470:CDS | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_3:2734186-2734205 | Msa0438470:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_3:2734364-2734383 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_3:2734369-2734388 | Msa0438470:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_3:2734558-2734577 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_3:2734575-2734594 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_3:2734607-2734626 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_3:2734876-2734895 | None:intergenic | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_3:2735682-2735701 | Msa0438470:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_3:2736180-2736199 | Msa0438470:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_3:2736185-2736204 | Msa0438470:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_3:2736229-2736248 | Msa0438470:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_3:2736251-2736270 | None:intergenic | 50.0% | |
| ATAGACACGCTGCATCGGAG+CGG | - | chr3_3:2734130-2734149 | None:intergenic | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_3:2734349-2734368 | Msa0438470:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_3:2734365-2734384 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_3:2735893-2735912 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_3:2736194-2736213 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_3:2736200-2736219 | Msa0438470:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_3:2736237-2736256 | None:intergenic | 55.0% |
| ATAGACACGCTGCATCGGAG+CGG | - | chr3_3:2734130-2734149 | None:intergenic | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_3:2734349-2734368 | Msa0438470:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_3:2734365-2734384 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_3:2735893-2735912 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_3:2736194-2736213 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_3:2736200-2736219 | Msa0438470:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_3:2736237-2736256 | None:intergenic | 55.0% |
| ATCGGAGCGGCAGTACACCA+TGG | - | chr3_3:2734117-2734136 | None:intergenic | 60.0% | |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_3:2735038-2735057 | Msa0438470:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_3:2735522-2735541 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_3:2736210-2736229 | Msa0438470:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_3:2736211-2736230 | Msa0438470:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_3:2736234-2736253 | Msa0438470:CDS | 60.0% |
| ATCGGAGCGGCAGTACACCA+TGG | - | chr3_3:2734117-2734136 | None:intergenic | 60.0% | |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_3:2735038-2735057 | Msa0438470:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_3:2735522-2735541 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_3:2736210-2736229 | Msa0438470:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_3:2736211-2736230 | Msa0438470:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_3:2736234-2736253 | Msa0438470:CDS | 60.0% |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_3:2734593-2734612 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_3:2734593-2734612 | Msa0438470:CDS | 65.0% | |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_3:2734593-2734612 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_3:2734593-2734612 | Msa0438470:CDS | 65.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_3:2736215-2736234 | Msa0438470:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_3:2736219-2736238 | None:intergenic | 70.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_3:2736215-2736234 | Msa0438470:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_3:2736219-2736238 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 2734077 | 2736297 | 2734077 | ID=Msa0438470;Name=Msa0438470 |
| chr3_3 | mRNA | 2734077 | 2736297 | 2734077 | ID=Msa0438470-mRNA-1;Parent=Msa0438470;Name=Msa0438470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|411 |
| chr3_3 | exon | 2734077 | 2734640 | 2734077 | ID=Msa0438470-mRNA-1:exon:633;Parent=Msa0438470-mRNA-1 |
| chr3_3 | exon | 2734864 | 2735094 | 2734864 | ID=Msa0438470-mRNA-1:exon:634;Parent=Msa0438470-mRNA-1 |
| chr3_3 | exon | 2735486 | 2735796 | 2735486 | ID=Msa0438470-mRNA-1:exon:635;Parent=Msa0438470-mRNA-1 |
| chr3_3 | exon | 2736168 | 2736297 | 2736168 | ID=Msa0438470-mRNA-1:exon:636;Parent=Msa0438470-mRNA-1 |
| chr3_3 | CDS | 2734077 | 2734640 | 2734077 | ID=Msa0438470-mRNA-1:cds;Parent=Msa0438470-mRNA-1 |
| chr3_3 | CDS | 2734864 | 2735094 | 2734864 | ID=Msa0438470-mRNA-1:cds;Parent=Msa0438470-mRNA-1 |
| chr3_3 | CDS | 2735486 | 2735796 | 2735486 | ID=Msa0438470-mRNA-1:cds;Parent=Msa0438470-mRNA-1 |
| chr3_3 | CDS | 2736168 | 2736297 | 2736168 | ID=Msa0438470-mRNA-1:cds;Parent=Msa0438470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
