AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127640 MtrunA17_Chr1g0191231 99.445 541 3 0 1 541 1 541 0.0 1093
Msa0127640 MtrunA17_Chr7g0273581 73.657 577 107 4 9 540 3 579 0.0 847
Msa0127640 MtrunA17_Chr4g0066681 74.669 529 128 2 7 532 6 531 0.0 801
Msa0127640 MtrunA17_Chr1g0191531 63.048 525 161 4 23 532 23 529 0.0 660
Msa0127640 MtrunA17_Chr3g0100591 61.858 506 185 4 19 521 24 524 0.0 623
Msa0127640 MtrunA17_Chr1g0191541 53.435 524 173 6 13 532 13 469 5.41e-179 512
Msa0127640 MtrunA17_Chr2g0291231 36.224 196 107 7 253 445 14 194 3.87e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127640 AT3G05030.1 77.281 537 118 2 7 539 6 542 0.0 847
Msa0127640 AT3G05030.4 77.281 537 118 2 7 539 6 542 0.0 847
Msa0127640 AT3G05030.2 77.281 537 118 2 7 539 6 542 0.0 847
Msa0127640 AT5G27150.1 77.674 533 115 3 5 536 2 531 0.0 822
Msa0127640 AT3G06370.3 73.211 545 135 3 1 540 1 539 0.0 760
Msa0127640 AT3G06370.4 73.211 545 135 3 1 540 1 539 0.0 760
Msa0127640 AT3G05030.3 81.922 437 73 1 7 437 6 442 0.0 724
Msa0127640 AT3G06370.1 74.263 509 120 3 1 504 1 503 0.0 711
Msa0127640 AT3G06370.2 80.446 404 79 0 1 404 1 404 0.0 637
Msa0127640 AT5G55470.1 58.712 528 203 5 1 521 1 520 0.0 607
Msa0127640 AT1G79610.1 31.828 443 264 15 18 445 20 439 3.31e-48 176
Msa0127640 AT1G54370.1 31.081 518 312 18 19 519 20 509 4.39e-41 155

Find 140 sgRNAs with CRISPR-Local

Find 721 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGTATAGTCTTGTATT+TGG 0.133117 1_3:+57106870 Msa0127640:CDS
TACTACTGGACTTTGAAATT+TGG 0.159315 1_3:+57104755 Msa0127640:five_prime_UTR
CTTTCTCTGTTCGAATTCTT+TGG 0.185435 1_3:+57104235 Msa0127640:five_prime_UTR
TTCAATTGCATTGCATTTCT+TGG 0.206910 1_3:+57106971 Msa0127640:CDS
TCATTCATTGTCCCACTTCT+AGG 0.209054 1_3:+57109599 Msa0127640:CDS
AATGCTACTATCAATCATTT+TGG 0.223873 1_3:+57104268 Msa0127640:five_prime_UTR
TATTGTATAGTCTTGTATTT+GGG 0.239719 1_3:+57106871 Msa0127640:CDS
AGTGGGACAATGAATGATTT+TGG 0.240398 1_3:-57109593 None:intergenic
AGCTCAGAAACATAAATATC+TGG 0.260306 1_3:+57104722 Msa0127640:five_prime_UTR
AACACATATTACACATTTCA+TGG 0.268912 1_3:-57109842 None:intergenic
CTCACACTGTTCATCGATTA+TGG 0.271792 1_3:+57109705 Msa0127640:CDS
TCAAAACTCTTTCTATTTAC+CGG 0.284679 1_3:+57104175 Msa0127640:five_prime_UTR
ATCACATCATTTGGAGCTAT+TGG 0.297209 1_3:+57106280 Msa0127640:CDS
AGTGACTCAACAAGATTATT+AGG 0.313295 1_3:+57103936 Msa0127640:five_prime_UTR
AGATCAGAAGGTTCTTAAAA+TGG 0.321486 1_3:+57104697 Msa0127640:five_prime_UTR
CTGTGTGCTTGTATTGTCCT+TGG 0.329640 1_3:+57104941 Msa0127640:CDS
AGACTCTGTTTGCACATTGC+AGG 0.351154 1_3:+57106741 Msa0127640:CDS
TTCATGACTATCACATCATT+TGG 0.361443 1_3:+57106271 Msa0127640:CDS
TTGATGCAGTTCACCATGTC+GGG 0.365442 1_3:+57109036 Msa0127640:intron
TGTTCGGTCGGTGAATTTCA+TGG 0.372487 1_3:-57109655 None:intergenic
ATTACAATTTATCAGGTGTT+TGG 0.372668 1_3:+57109488 Msa0127640:intron
GGAGAGAGATGAGAAAGTTC+TGG 0.374087 1_3:-57104071 None:intergenic
TTGTTGGGTCTAATACTTCT+TGG 0.378696 1_3:+57108596 Msa0127640:CDS
TCTGTCGATATTCTATTTAG+AGG 0.379221 1_3:-57103914 None:intergenic
TTTAGTCAAGTTGGATAAGA+AGG 0.381030 1_3:-57108645 None:intergenic
CAAGTTGGATAAGAAGGATA+AGG 0.382746 1_3:-57108639 None:intergenic
AGCTGCAAGTTCAGTATTGT+TGG 0.385899 1_3:+57108580 Msa0127640:CDS
TGTTTCTATGAACTTGTTTG+TGG 0.386146 1_3:+57104913 Msa0127640:CDS
AATGGCACTTGCGTATAATC+AGG 0.391176 1_3:+57108842 Msa0127640:CDS
CTGGGATTCATTATTACTAC+TGG 0.398345 1_3:+57104741 Msa0127640:five_prime_UTR
ATCTTTATCTTCCTTTATGT+TGG 0.399431 1_3:+57108284 Msa0127640:CDS
GATTCTGAAGCTGATCTTGA+AGG 0.399508 1_3:+57109632 Msa0127640:CDS
TATCTTCCTTTATGTTGGTA+TGG 0.401826 1_3:+57108289 Msa0127640:CDS
TAGGTTATCATTTGGTGGGC+TGG 0.409191 1_3:+57108798 Msa0127640:intron
AATGGAAGTTTGTTAGTGAT+AGG 0.409420 1_3:+57108330 Msa0127640:CDS
ACTGAAAACTTACAATCAAA+AGG 0.409719 1_3:-57105009 None:intergenic
TCTTCTCAGGGTATTTGCAC+TGG 0.411364 1_3:+57105355 Msa0127640:intron
TCAATTGCATTGCATTTCTT+GGG 0.411660 1_3:+57106972 Msa0127640:CDS
CAAAGAATTCGAACAGAGAA+AGG 0.413872 1_3:-57104234 None:intergenic
CAATCCCTAGTTCGAATTCC+CGG 0.415642 1_3:-57104194 None:intergenic
TATGAGAGGTGCTGTTTCAA+TGG 0.419953 1_3:+57108824 Msa0127640:CDS
GACGATGCAGGTGCTAAATC+AGG 0.421808 1_3:+57106836 Msa0127640:intron
TACCCGGCATTGAATATAAT+AGG 0.423054 1_3:-57105463 None:intergenic
GGTAGTTGTTGTTATACAAT+GGG 0.424935 1_3:-57103870 None:intergenic
CTGGAAATCGGCGATTATCT+AGG 0.425226 1_3:+57106617 Msa0127640:CDS
CGGTAGTTGTTGTTATACAA+TGG 0.426319 1_3:-57103871 None:intergenic
AATACAAGACTATACAATAA+AGG 0.427303 1_3:-57106867 None:intergenic
GGTAAGAATGCCACTCAGAT+AGG 0.440033 1_3:-57108042 None:intergenic
TGAACGCAATGGTAATCAAT+GGG 0.442698 1_3:+57109805 Msa0127640:CDS
GGCTTACCACTGTGCTGAAA+AGG 0.442970 1_3:-57109113 None:intergenic
CTTGGTGAGCCAGGTTCTAC+AGG 0.443445 1_3:-57109782 None:intergenic
CAAGATCAGCTTCAGAATCT+CGG 0.443542 1_3:-57109628 None:intergenic
ATTTACCGGGAATTCGAACT+AGG 0.447409 1_3:+57104189 Msa0127640:five_prime_UTR
GATATTGGGCCACTGGAAAT+CGG 0.450578 1_3:+57106605 Msa0127640:CDS
AGTAAAGCACGAAGGCTGTT+CGG 0.452548 1_3:-57109671 None:intergenic
TTGTTATGTCTCATTATACT+TGG 0.457147 1_3:+57108081 Msa0127640:CDS
TTGCGTTCACTTGGTGAGCC+AGG 0.466834 1_3:-57109791 None:intergenic
TGCTGACTAAGCCACTCATA+AGG 0.466961 1_3:+57109513 Msa0127640:CDS
TGTGAACTAAAATCCATCAT+TGG 0.466979 1_3:-57110124 None:intergenic
CAAAACTCTTTCTATTTACC+GGG 0.468448 1_3:+57104176 Msa0127640:five_prime_UTR
GGGCATCCATACCAACATAA+AGG 0.472613 1_3:-57108295 None:intergenic
AAGTTGGATAAGAAGGATAA+GGG 0.473086 1_3:-57108638 None:intergenic
GTGAACGCAATGGTAATCAA+TGG 0.474866 1_3:+57109804 Msa0127640:CDS
GTTGTTGTTATACAATGGGT+TGG 0.476547 1_3:-57103866 None:intergenic
AAGAAATGCAATGCAATTGA+AGG 0.486550 1_3:-57106969 None:intergenic
GCTGCAAGTTCAGTATTGTT+GGG 0.488198 1_3:+57108581 Msa0127640:CDS
CTTGCAGCTATAGATGTTCC+AGG 0.488582 1_3:-57108566 None:intergenic
AACAATACCACAAAAGAATA+CGG 0.489252 1_3:-57108063 None:intergenic
TACAATCAAAAGGGCAGTGA+TGG 0.489549 1_3:-57104999 None:intergenic
AAGATCAGCTTCAGAATCTC+GGG 0.489748 1_3:-57109627 None:intergenic
TGATTACCATTGCGTTCACT+TGG 0.493357 1_3:-57109800 None:intergenic
TTATGTTGGTATGGATGCCC+TGG 0.498703 1_3:+57108298 Msa0127640:CDS
CTCAACAAAATTTCACTACC+AGG 0.499402 1_3:-57109964 None:intergenic
AACAGAAGCATGATCGGAAG+TGG 0.501203 1_3:-57104891 None:intergenic
ACACATACACAAACATGTAA+TGG 0.502601 1_3:-57110067 None:intergenic
CCGCCTATTATATTCAATGC+CGG 0.505451 1_3:+57105460 Msa0127640:CDS
CTATCTACACTCTCCAATGA+TGG 0.507711 1_3:+57110111 Msa0127640:three_prime_UTR
GTGATGAATTATGCAGAAGA+AGG 0.509014 1_3:-57104137 None:intergenic
CGCCTATTATATTCAATGCC+GGG 0.509321 1_3:+57105461 Msa0127640:CDS
GAGGATGGATATTGGGCCAC+TGG 0.510833 1_3:+57106598 Msa0127640:CDS
TATAGTCTTGTATTTGGGGA+AGG 0.512404 1_3:+57106876 Msa0127640:CDS
TGCTTGCTACAAACAAATAC+AGG 0.513396 1_3:-57107001 None:intergenic
TTTGATGCAGTTCACCATGT+CGG 0.516704 1_3:+57109035 Msa0127640:intron
TTTGTAGCAAGCACACTCCT+TGG 0.519299 1_3:+57107011 Msa0127640:CDS
GGCATACCTCTCCTATATGC+TGG 0.520496 1_3:+57107922 Msa0127640:CDS
TGGCCATACTTGCTGTCTGA+AGG 0.525975 1_3:-57108690 None:intergenic
ACCTACCTCAGCCAGCATAT+AGG 0.526592 1_3:-57107933 None:intergenic
GCTCAGAAACATAAATATCT+GGG 0.530136 1_3:+57104723 Msa0127640:five_prime_UTR
GGTTGCTCTTATGATGCTAA+TGG 0.530635 1_3:+57107901 Msa0127640:CDS
TTTGAGTAGCTAGTCTGAGA+TGG 0.531156 1_3:+57109990 Msa0127640:three_prime_UTR
AGCAACGCGTGATGATGAAT+CGG 0.531376 1_3:-57103998 None:intergenic
GTGGAGGGTGGACGACATCA+TGG 0.532330 1_3:+57104826 Msa0127640:exon
CTGAAAACTTACAATCAAAA+GGG 0.534892 1_3:-57105008 None:intergenic
AGAAACAACAGAAGCATGAT+CGG 0.540009 1_3:-57104897 None:intergenic
AGAGAGATATTATATATCTC+CGG 0.540483 1_3:-57103891 None:intergenic
ATGCAATTGAAGGGTTCAGT+TGG 0.548283 1_3:-57106959 None:intergenic
CATTGTATAACAACAACTAC+CGG 0.568653 1_3:+57103872 Msa0127640:five_prime_UTR
TTTACCGGGAATTCGAACTA+GGG 0.570945 1_3:+57104190 Msa0127640:five_prime_UTR
TGATGAATTATGCAGAAGAA+GGG 0.572686 1_3:-57104136 None:intergenic
AAGAGCAACCTCACGATCTG+TGG 0.575236 1_3:-57107888 None:intergenic
ATCTTCTCGAGGAGAATCGA+TGG 0.579050 1_3:+57104966 Msa0127640:CDS
AATCGATGAACAGTGTGAGT+TGG 0.579424 1_3:-57109701 None:intergenic
TCATCATCACGCGTTGCTCG+AGG 0.587162 1_3:+57104003 Msa0127640:five_prime_UTR
AAGCACACTCCTTGGCGTTG+TGG 0.587805 1_3:+57107019 Msa0127640:CDS
TCTCGGGAATCTCCTAGAAG+TGG 0.589238 1_3:-57109611 None:intergenic
CTTGTGTTGATGAGATCAGA+AGG 0.590827 1_3:+57104685 Msa0127640:five_prime_UTR
TGAATATAATAGGCGGCAGA+AGG 0.597021 1_3:-57105453 None:intergenic
ATCTTGTGTCATTATAACCA+CGG 0.600760 1_3:+57106312 Msa0127640:CDS
TCTTGTGTCATTATAACCAC+GGG 0.605584 1_3:+57106313 Msa0127640:CDS
CCTCTCCTATATGCTGGCTG+AGG 0.606924 1_3:+57107928 Msa0127640:CDS
TGGTGGGCTGGTCTTATGAG+AGG 0.607118 1_3:+57108810 Msa0127640:CDS
GATAAAGATCTCAGCAACAA+AGG 0.607883 1_3:-57108270 None:intergenic
CTCGGGAATCTCCTAGAAGT+GGG 0.609122 1_3:-57109610 None:intergenic
ATTGTATAGTCTTGTATTTG+GGG 0.609143 1_3:+57106872 Msa0127640:CDS
AGAAATGCAATGCAATTGAA+GGG 0.611163 1_3:-57106968 None:intergenic
AAGCACGAAGGCTGTTCGGT+CGG 0.612423 1_3:-57109667 None:intergenic
TGTCCTTGGTCATCTTCTCG+AGG 0.623388 1_3:+57104955 Msa0127640:CDS
TTAGGAGTGATAATCTTCCA+CGG 0.640851 1_3:+57103954 Msa0127640:five_prime_UTR
TAGTTGAGTATGCCCCGACA+TGG 0.643424 1_3:-57109049 None:intergenic
TTACATAATAGACAGAGAGA+TGG 0.644211 1_3:-57110017 None:intergenic
TGATGCAGTTCACCATGTCG+GGG 0.644290 1_3:+57109037 Msa0127640:intron
CAGGCACTCCACAGATCGTG+AGG 0.650350 1_3:+57107880 Msa0127640:intron
AAGGACAACAGTGATGGTGC+TGG 0.652906 1_3:-57109094 None:intergenic
AGATAATCGCCGATTTCCAG+TGG 0.654519 1_3:-57106614 None:intergenic
GAGAAAGTTCTGGAAGACAA+TGG 0.655034 1_3:-57104061 None:intergenic
GATCTCAGCAACAAAGGACA+AGG 0.655763 1_3:-57108264 None:intergenic
TGTGCAAACAGAGTCTGTTG+CGG 0.676521 1_3:-57106734 None:intergenic
AGGCATTTACCACAACGCCA+AGG 0.680339 1_3:-57107028 None:intergenic
GGCTCACCAAGTGAACGCAA+TGG 0.680619 1_3:+57109794 Msa0127640:CDS
CCTCAGCCAGCATATAGGAG+AGG 0.687456 1_3:-57107928 None:intergenic
GAACGCAATGGTAATCAATG+GGG 0.694035 1_3:+57109806 Msa0127640:CDS
CCGGCATTGAATATAATAGG+CGG 0.694673 1_3:-57105460 None:intergenic
AGAAAGAGAGAAAATACACG+TGG 0.697943 1_3:-57104092 None:intergenic
GCTGAAAAGGACAACAGTGA+TGG 0.701655 1_3:-57109100 None:intergenic
GGTAGTAGAAGCCTTATGAG+TGG 0.701911 1_3:-57109524 None:intergenic
TCTCCTCGAGAAGATGACCA+AGG 0.718020 1_3:-57104958 None:intergenic
ATGCAGTTAACCTATCTGAG+TGG 0.719464 1_3:+57108032 Msa0127640:intron
TGCATTGAAAAGAACCACTG+AGG 0.727765 1_3:-57106916 None:intergenic
TGTGAATGATGCTACCTCAG+TGG 0.753451 1_3:+57106902 Msa0127640:CDS
GAGTTGATAGTAAAGCACGA+AGG 0.775920 1_3:-57109679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTATTTTTGTATAT+TGG + chr1_3:57104580-57104599 Msa0127640:intron 10.0%
!!! AGTTTTTTATTTTTGTATAT+TGG + chr1_3:57104580-57104599 Msa0127640:intron 10.0%
!!! AAAAACATGATTTAATTTGA+CGG + chr1_3:57104464-57104483 Msa0127640:intron 15.0%
!!! GCATCTATTTATTTATTTTT+TGG + chr1_3:57105296-57105315 Msa0127640:intron 15.0%
!!! ATTTATTTTTTGGTTTCTAT+TGG + chr1_3:57105306-57105325 Msa0127640:intron 15.0%
!! AAATTAATTTATGCAAAAAG+AGG + chr1_3:57105717-57105736 Msa0127640:intron 15.0%
!!! TGGTTATGAATTTTTTTATA+TGG - chr1_3:57106072-57106091 None:intergenic 15.0%
!!! AATATTTCTTTTAGTTGATT+AGG - chr1_3:57106490-57106509 None:intergenic 15.0%
!! ATGTTATATTGAAAATACAA+TGG - chr1_3:57107231-57107250 None:intergenic 15.0%
!! ATATATACAATATAACAGAT+TGG - chr1_3:57107268-57107287 None:intergenic 15.0%
!! TAATATTTGAACATTTAGAA+TGG - chr1_3:57107538-57107557 None:intergenic 15.0%
!! AAATAATATAATGAAGAGAT+AGG + chr1_3:57107579-57107598 Msa0127640:intron 15.0%
!! AAATAATTACATTGTTTCAA+TGG + chr1_3:57107744-57107763 Msa0127640:intron 15.0%
!!! TCTTTAAAAAAAAAAAAACC+TGG + chr1_3:57109946-57109965 Msa0127640:three_prime_UTR 15.0%
!!! AAAAACATGATTTAATTTGA+CGG + chr1_3:57104464-57104483 Msa0127640:intron 15.0%
!!! GCATCTATTTATTTATTTTT+TGG + chr1_3:57105296-57105315 Msa0127640:intron 15.0%
!!! ATTTATTTTTTGGTTTCTAT+TGG + chr1_3:57105306-57105325 Msa0127640:intron 15.0%
!! AAATTAATTTATGCAAAAAG+AGG + chr1_3:57105717-57105736 Msa0127640:intron 15.0%
!!! TGGTTATGAATTTTTTTATA+TGG - chr1_3:57106072-57106091 None:intergenic 15.0%
!!! AATATTTCTTTTAGTTGATT+AGG - chr1_3:57106490-57106509 None:intergenic 15.0%
!! ATGTTATATTGAAAATACAA+TGG - chr1_3:57107231-57107250 None:intergenic 15.0%
!! ATATATACAATATAACAGAT+TGG - chr1_3:57107268-57107287 None:intergenic 15.0%
!! TAATATTTGAACATTTAGAA+TGG - chr1_3:57107538-57107557 None:intergenic 15.0%
!! AAATAATATAATGAAGAGAT+AGG + chr1_3:57107579-57107598 Msa0127640:intron 15.0%
!! AAATAATTACATTGTTTCAA+TGG + chr1_3:57107744-57107763 Msa0127640:intron 15.0%
!!! AAATAGAAAGAGTTTTGAAA+TGG - chr1_3:57104173-57104192 None:intergenic 20.0%
!!! AAAACATGATTTAATTTGAC+GGG + chr1_3:57104465-57104484 Msa0127640:intron 20.0%
!! AGGAATATATATTACCAAAT+AGG + chr1_3:57104546-57104565 Msa0127640:intron 20.0%
!!! ATTTGTCATGTTTTGTATAT+TGG + chr1_3:57104620-57104639 Msa0127640:intron 20.0%
!! CCTAATAAATAAATCTAAAG+AGG - chr1_3:57106348-57106367 None:intergenic 20.0%
!! CCTCTTTAGATTTATTTATT+AGG + chr1_3:57106345-57106364 Msa0127640:intron 20.0%
!!! TTGTGATAATTTTTAGCTAT+TGG + chr1_3:57106700-57106719 Msa0127640:intron 20.0%
!! AATACAAGACTATACAATAA+AGG - chr1_3:57106870-57106889 None:intergenic 20.0%
!!! TTATTGTATAGTCTTGTATT+TGG + chr1_3:57106870-57106889 Msa0127640:CDS 20.0%
!!! TATTGTATAGTCTTGTATTT+GGG + chr1_3:57106871-57106890 Msa0127640:CDS 20.0%
!! TATTGAAAATACAATGGAAA+TGG - chr1_3:57107225-57107244 None:intergenic 20.0%
!! TTCAATATAACATGATATGA+TGG + chr1_3:57107238-57107257 Msa0127640:intron 20.0%
!!! GTTTTGGATATTTGAATAAT+TGG + chr1_3:57108889-57108908 Msa0127640:intron 20.0%
!! AGTTATAGCTATTTATTGTT+TGG - chr1_3:57108927-57108946 None:intergenic 20.0%
!! CAAGTTAATTACAATTTATC+AGG + chr1_3:57109481-57109500 Msa0127640:intron 20.0%
!! TAAAGAAAAATTTCACTACT+AGG - chr1_3:57109932-57109951 None:intergenic 20.0%
!!! AAATAGAAAGAGTTTTGAAA+TGG - chr1_3:57104173-57104192 None:intergenic 20.0%
!!! AAAACATGATTTAATTTGAC+GGG + chr1_3:57104465-57104484 Msa0127640:intron 20.0%
!! AGGAATATATATTACCAAAT+AGG + chr1_3:57104546-57104565 Msa0127640:intron 20.0%
!!! ATTTGTCATGTTTTGTATAT+TGG + chr1_3:57104620-57104639 Msa0127640:intron 20.0%
!! CCTAATAAATAAATCTAAAG+AGG - chr1_3:57106348-57106367 None:intergenic 20.0%
!! CCTCTTTAGATTTATTTATT+AGG + chr1_3:57106345-57106364 Msa0127640:intron 20.0%
!!! TTGTGATAATTTTTAGCTAT+TGG + chr1_3:57106700-57106719 Msa0127640:intron 20.0%
!! AATACAAGACTATACAATAA+AGG - chr1_3:57106870-57106889 None:intergenic 20.0%
!!! TTATTGTATAGTCTTGTATT+TGG + chr1_3:57106870-57106889 Msa0127640:CDS 20.0%
!!! TATTGTATAGTCTTGTATTT+GGG + chr1_3:57106871-57106890 Msa0127640:CDS 20.0%
!! TATTGAAAATACAATGGAAA+TGG - chr1_3:57107225-57107244 None:intergenic 20.0%
!! TTCAATATAACATGATATGA+TGG + chr1_3:57107238-57107257 Msa0127640:intron 20.0%
!!! GTTTTGGATATTTGAATAAT+TGG + chr1_3:57108889-57108908 Msa0127640:intron 20.0%
!! AGTTATAGCTATTTATTGTT+TGG - chr1_3:57108927-57108946 None:intergenic 20.0%
!! CAAGTTAATTACAATTTATC+AGG + chr1_3:57109481-57109500 Msa0127640:intron 20.0%
!! TAAAGAAAAATTTCACTACT+AGG - chr1_3:57109932-57109951 None:intergenic 20.0%
! AGAGAGATATTATATATCTC+CGG - chr1_3:57103894-57103913 None:intergenic 25.0%
! TCAAAACTCTTTCTATTTAC+CGG + chr1_3:57104175-57104194 Msa0127640:five_prime_UTR 25.0%
!! AATGCTACTATCAATCATTT+TGG + chr1_3:57104268-57104287 Msa0127640:five_prime_UTR 25.0%
!!! TTTTCTTTTGCCTTGTTTTT+TGG + chr1_3:57104513-57104532 Msa0127640:intron 25.0%
! AATTCCAATTCCAAAAAACA+AGG - chr1_3:57104526-57104545 None:intergenic 25.0%
!!! TGTTTTTTGGAATTGGAATT+AGG + chr1_3:57104526-57104545 Msa0127640:intron 25.0%
! TATATTACCAAATAGGTTCT+AGG + chr1_3:57104553-57104572 Msa0127640:intron 25.0%
!!! AAATCTGCTTTTGAAATTTG+TGG + chr1_3:57104807-57104826 Msa0127640:five_prime_UTR 25.0%
! CTGAAAACTTACAATCAAAA+GGG - chr1_3:57105011-57105030 None:intergenic 25.0%
! ACTGAAAACTTACAATCAAA+AGG - chr1_3:57105012-57105031 None:intergenic 25.0%
! AACTCATTCTCCAAATATTA+TGG + chr1_3:57105072-57105091 Msa0127640:intron 25.0%
! ACTCATTCTCCAAATATTAT+GGG + chr1_3:57105073-57105092 Msa0127640:intron 25.0%
! ATGTGATGTTCCAATTAAAA+GGG + chr1_3:57105555-57105574 Msa0127640:intron 25.0%
! CTAGTTTCAAATCATCATAT+TGG - chr1_3:57105651-57105670 None:intergenic 25.0%
! ATAATTAACGGTTTACTCAA+TGG + chr1_3:57105741-57105760 Msa0127640:intron 25.0%
!!! TGCTTTTTTAAAAGTGACTT+AGG + chr1_3:57105838-57105857 Msa0127640:intron 25.0%
! CTAAGTGTAGTTAATTTAAG+AGG - chr1_3:57105923-57105942 None:intergenic 25.0%
! AACTAAAACAGCTATTCTAA+TGG + chr1_3:57106017-57106036 Msa0127640:intron 25.0%
!!! TGAATGAAGTATTTTTGAAG+GGG - chr1_3:57106104-57106123 None:intergenic 25.0%
!!! CTGAATGAAGTATTTTTGAA+GGG - chr1_3:57106105-57106124 None:intergenic 25.0%
! TGTTCTCTGTAATATATTTC+AGG + chr1_3:57106215-57106234 Msa0127640:intron 25.0%
! TAAATATGAGCCATTATTTC+AGG + chr1_3:57106557-57106576 Msa0127640:intron 25.0%
!!! ATTGTATAGTCTTGTATTTG+GGG + chr1_3:57106872-57106891 Msa0127640:CDS 25.0%
! GTTATTAAAAAGCTGTACAT+TGG + chr1_3:57107177-57107196 Msa0127640:CDS 25.0%
! AAGCAATGTTCTATGTTAAA+TGG + chr1_3:57107418-57107437 Msa0127640:intron 25.0%
! TATATTGAATCCTATCATTC+TGG - chr1_3:57107461-57107480 None:intergenic 25.0%
!!! TCTTAAATTTGTTGCTGTTT+AGG + chr1_3:57107719-57107738 Msa0127640:intron 25.0%
!! AGAACTTTAGTAATGTTTTC+TGG + chr1_3:57107961-57107980 Msa0127640:intron 25.0%
! AACAATACCACAAAAGAATA+CGG - chr1_3:57108066-57108085 None:intergenic 25.0%
! TTGTTATGTCTCATTATACT+TGG + chr1_3:57108081-57108100 Msa0127640:CDS 25.0%
! ATCTTTATCTTCCTTTATGT+TGG + chr1_3:57108284-57108303 Msa0127640:CDS 25.0%
! AAAAATCGCTCAGTAAAAAA+GGG - chr1_3:57108401-57108420 None:intergenic 25.0%
! TAAAAATCGCTCAGTAAAAA+AGG - chr1_3:57108402-57108421 None:intergenic 25.0%
! TAGGAAGAAAAAAACAGTTA+AGG - chr1_3:57108515-57108534 None:intergenic 25.0%
!!! TTGTGATTTTTTAGTCAAGT+TGG - chr1_3:57108657-57108676 None:intergenic 25.0%
! AAATGATAACCTAAAATGAG+GGG - chr1_3:57108791-57108810 None:intergenic 25.0%
! CAAATGATAACCTAAAATGA+GGG - chr1_3:57108792-57108811 None:intergenic 25.0%
!!! ATTTTAGGTTATCATTTGGT+GGG + chr1_3:57108794-57108813 Msa0127640:intron 25.0%
! TATAACTGATCCTATCTATT+GGG + chr1_3:57108940-57108959 Msa0127640:intron 25.0%
! AAAGAATTTCCTACATTTCA+TGG - chr1_3:57109325-57109344 None:intergenic 25.0%
! ATTACAATTTATCAGGTGTT+TGG + chr1_3:57109488-57109507 Msa0127640:intron 25.0%
! AACACATATTACACATTTCA+TGG - chr1_3:57109845-57109864 None:intergenic 25.0%
! AGAGAGATATTATATATCTC+CGG - chr1_3:57103894-57103913 None:intergenic 25.0%
! TCAAAACTCTTTCTATTTAC+CGG + chr1_3:57104175-57104194 Msa0127640:five_prime_UTR 25.0%
!! AATGCTACTATCAATCATTT+TGG + chr1_3:57104268-57104287 Msa0127640:five_prime_UTR 25.0%
!!! TTTTCTTTTGCCTTGTTTTT+TGG + chr1_3:57104513-57104532 Msa0127640:intron 25.0%
! AATTCCAATTCCAAAAAACA+AGG - chr1_3:57104526-57104545 None:intergenic 25.0%
!!! TGTTTTTTGGAATTGGAATT+AGG + chr1_3:57104526-57104545 Msa0127640:intron 25.0%
! TATATTACCAAATAGGTTCT+AGG + chr1_3:57104553-57104572 Msa0127640:intron 25.0%
!!! AAATCTGCTTTTGAAATTTG+TGG + chr1_3:57104807-57104826 Msa0127640:five_prime_UTR 25.0%
! CTGAAAACTTACAATCAAAA+GGG - chr1_3:57105011-57105030 None:intergenic 25.0%
! ACTGAAAACTTACAATCAAA+AGG - chr1_3:57105012-57105031 None:intergenic 25.0%
! AACTCATTCTCCAAATATTA+TGG + chr1_3:57105072-57105091 Msa0127640:intron 25.0%
! ACTCATTCTCCAAATATTAT+GGG + chr1_3:57105073-57105092 Msa0127640:intron 25.0%
! ATGTGATGTTCCAATTAAAA+GGG + chr1_3:57105555-57105574 Msa0127640:intron 25.0%
! CTAGTTTCAAATCATCATAT+TGG - chr1_3:57105651-57105670 None:intergenic 25.0%
! ATAATTAACGGTTTACTCAA+TGG + chr1_3:57105741-57105760 Msa0127640:intron 25.0%
!!! TGCTTTTTTAAAAGTGACTT+AGG + chr1_3:57105838-57105857 Msa0127640:intron 25.0%
! CTAAGTGTAGTTAATTTAAG+AGG - chr1_3:57105923-57105942 None:intergenic 25.0%
! AACTAAAACAGCTATTCTAA+TGG + chr1_3:57106017-57106036 Msa0127640:intron 25.0%
!!! TGAATGAAGTATTTTTGAAG+GGG - chr1_3:57106104-57106123 None:intergenic 25.0%
!!! CTGAATGAAGTATTTTTGAA+GGG - chr1_3:57106105-57106124 None:intergenic 25.0%
! TGTTCTCTGTAATATATTTC+AGG + chr1_3:57106215-57106234 Msa0127640:intron 25.0%
! TAAATATGAGCCATTATTTC+AGG + chr1_3:57106557-57106576 Msa0127640:intron 25.0%
!!! ATTGTATAGTCTTGTATTTG+GGG + chr1_3:57106872-57106891 Msa0127640:CDS 25.0%
! GTTATTAAAAAGCTGTACAT+TGG + chr1_3:57107177-57107196 Msa0127640:CDS 25.0%
! AAGCAATGTTCTATGTTAAA+TGG + chr1_3:57107418-57107437 Msa0127640:intron 25.0%
! TATATTGAATCCTATCATTC+TGG - chr1_3:57107461-57107480 None:intergenic 25.0%
!!! TCTTAAATTTGTTGCTGTTT+AGG + chr1_3:57107719-57107738 Msa0127640:intron 25.0%
!! AGAACTTTAGTAATGTTTTC+TGG + chr1_3:57107961-57107980 Msa0127640:intron 25.0%
! AACAATACCACAAAAGAATA+CGG - chr1_3:57108066-57108085 None:intergenic 25.0%
! TTGTTATGTCTCATTATACT+TGG + chr1_3:57108081-57108100 Msa0127640:CDS 25.0%
! ATCTTTATCTTCCTTTATGT+TGG + chr1_3:57108284-57108303 Msa0127640:CDS 25.0%
! AAAAATCGCTCAGTAAAAAA+GGG - chr1_3:57108401-57108420 None:intergenic 25.0%
! TAAAAATCGCTCAGTAAAAA+AGG - chr1_3:57108402-57108421 None:intergenic 25.0%
! TAGGAAGAAAAAAACAGTTA+AGG - chr1_3:57108515-57108534 None:intergenic 25.0%
!!! TTGTGATTTTTTAGTCAAGT+TGG - chr1_3:57108657-57108676 None:intergenic 25.0%
! AAATGATAACCTAAAATGAG+GGG - chr1_3:57108791-57108810 None:intergenic 25.0%
! CAAATGATAACCTAAAATGA+GGG - chr1_3:57108792-57108811 None:intergenic 25.0%
!!! ATTTTAGGTTATCATTTGGT+GGG + chr1_3:57108794-57108813 Msa0127640:intron 25.0%
! TATAACTGATCCTATCTATT+GGG + chr1_3:57108940-57108959 Msa0127640:intron 25.0%
! AAAGAATTTCCTACATTTCA+TGG - chr1_3:57109325-57109344 None:intergenic 25.0%
! ATTACAATTTATCAGGTGTT+TGG + chr1_3:57109488-57109507 Msa0127640:intron 25.0%
! AACACATATTACACATTTCA+TGG - chr1_3:57109845-57109864 None:intergenic 25.0%
! GGTAGTTGTTGTTATACAAT+GGG - chr1_3:57103873-57103892 None:intergenic 30.0%
CATTGTATAACAACAACTAC+CGG + chr1_3:57103872-57103891 Msa0127640:five_prime_UTR 30.0%
TCTGTCGATATTCTATTTAG+AGG - chr1_3:57103917-57103936 None:intergenic 30.0%
AGTGACTCAACAAGATTATT+AGG + chr1_3:57103936-57103955 Msa0127640:five_prime_UTR 30.0%
TGATGAATTATGCAGAAGAA+GGG - chr1_3:57104139-57104158 None:intergenic 30.0%
!!! AGAAAGAGTTTTGAAATGGT+TGG - chr1_3:57104169-57104188 None:intergenic 30.0%
CAAAACTCTTTCTATTTACC+GGG + chr1_3:57104176-57104195 Msa0127640:five_prime_UTR 30.0%
! CACTTACCTGTAATCATTTT+GGG + chr1_3:57104295-57104314 Msa0127640:intron 30.0%
TTTAGACCCAAAATGATTAC+AGG - chr1_3:57104304-57104323 None:intergenic 30.0%
!!! TTTGCCTTGTTTTTTGGAAT+TGG + chr1_3:57104519-57104538 Msa0127640:intron 30.0%
AGATCAGAAGGTTCTTAAAA+TGG + chr1_3:57104697-57104716 Msa0127640:five_prime_UTR 30.0%
AGCTCAGAAACATAAATATC+TGG + chr1_3:57104722-57104741 Msa0127640:five_prime_UTR 30.0%
GCTCAGAAACATAAATATCT+GGG + chr1_3:57104723-57104742 Msa0127640:five_prime_UTR 30.0%
!! TACTACTGGACTTTGAAATT+TGG + chr1_3:57104755-57104774 Msa0127640:five_prime_UTR 30.0%
! TGTTTCTATGAACTTGTTTG+TGG + chr1_3:57104913-57104932 Msa0127640:CDS 30.0%
TCATTTGAACAACTAGCTAA+AGG - chr1_3:57105037-57105056 None:intergenic 30.0%
! ATGCTTAGTTTGAGCTATAT+TGG + chr1_3:57105271-57105290 Msa0127640:intron 30.0%
!! TGATGATGGCTAAATGTTAT+TGG + chr1_3:57105330-57105349 Msa0127640:intron 30.0%
AATGTTATTGGATTCTTCTC+AGG + chr1_3:57105342-57105361 Msa0127640:intron 30.0%
ATGTTATTGGATTCTTCTCA+GGG + chr1_3:57105343-57105362 Msa0127640:intron 30.0%
TTCCATAGTAGACAATAAGA+TGG - chr1_3:57105501-57105520 None:intergenic 30.0%
CATGTGATGTTCCAATTAAA+AGG + chr1_3:57105554-57105573 Msa0127640:intron 30.0%
TGTGATGTTCCAATTAAAAG+GGG + chr1_3:57105556-57105575 Msa0127640:intron 30.0%
TCATCATATTGGTATGAATG+TGG - chr1_3:57105640-57105659 None:intergenic 30.0%
! CACTTCTTTATGCGTATTTT+TGG + chr1_3:57105689-57105708 Msa0127640:intron 30.0%
! GCAAAAAGAGGCATAATTAA+CGG + chr1_3:57105729-57105748 Msa0127640:intron 30.0%
AGAGATGAATTCACAAACAT+AGG - chr1_3:57105870-57105889 None:intergenic 30.0%
ATCTACAAGAAAAATCCAAG+AGG - chr1_3:57105947-57105966 None:intergenic 30.0%
! GATTTTTCTTGTAGATACCA+TGG + chr1_3:57105951-57105970 Msa0127640:intron 30.0%
!! GCTGAATGAAGTATTTTTGA+AGG - chr1_3:57106106-57106125 None:intergenic 30.0%
AATTTCATTGTGCGTAAATG+TGG + chr1_3:57106162-57106181 Msa0127640:intron 30.0%
TTCATGACTATCACATCATT+TGG + chr1_3:57106271-57106290 Msa0127640:CDS 30.0%
! ATCTTGTGTCATTATAACCA+CGG + chr1_3:57106312-57106331 Msa0127640:CDS 30.0%
TGAAAAAGCAAAGGTTAGTA+AGG - chr1_3:57106436-57106455 None:intergenic 30.0%
GCTTTCAATTGAAAAAGCAA+AGG - chr1_3:57106445-57106464 None:intergenic 30.0%
AAAAGTAGCACCTGAAATAA+TGG - chr1_3:57106570-57106589 None:intergenic 30.0%
!! TACTTTTGCTTTTAAGAGGA+TGG + chr1_3:57106583-57106602 Msa0127640:CDS 30.0%
!! CTTTTAAGAGGATGGATATT+GGG + chr1_3:57106591-57106610 Msa0127640:CDS 30.0%
ACTAGTCAATCTTATCTAGT+TGG + chr1_3:57106646-57106665 Msa0127640:intron 30.0%
AGAAATGCAATGCAATTGAA+GGG - chr1_3:57106971-57106990 None:intergenic 30.0%
AAGAAATGCAATGCAATTGA+AGG - chr1_3:57106972-57106991 None:intergenic 30.0%
TTCAATTGCATTGCATTTCT+TGG + chr1_3:57106971-57106990 Msa0127640:CDS 30.0%
TCAATTGCATTGCATTTCTT+GGG + chr1_3:57106972-57106991 Msa0127640:CDS 30.0%
TACGAAAATTAGACTGAACT+TGG + chr1_3:57107388-57107407 Msa0127640:intron 30.0%
AAATTAGACTGAACTTGGTT+TGG + chr1_3:57107393-57107412 Msa0127640:intron 30.0%
TTCCATATTGAGTACTATGT+AGG + chr1_3:57107815-57107834 Msa0127640:intron 30.0%
TCCATATTGAGTACTATGTA+GGG + chr1_3:57107816-57107835 Msa0127640:intron 30.0%
! ATTCTTACCGTATTCTTTTG+TGG + chr1_3:57108056-57108075 Msa0127640:CDS 30.0%
ATCTGTTTAGAAGACATACT+TGG - chr1_3:57108138-57108157 None:intergenic 30.0%
AGATATAGAAAAGACATGTC+TGG - chr1_3:57108200-57108219 None:intergenic 30.0%
! ATTTTTGTCCAACTTTTCAC+AGG + chr1_3:57108228-57108247 Msa0127640:intron 30.0%
TATCTTCCTTTATGTTGGTA+TGG + chr1_3:57108289-57108308 Msa0127640:CDS 30.0%
!! AATGGAAGTTTGTTAGTGAT+AGG + chr1_3:57108330-57108349 Msa0127640:CDS 30.0%
AAGTTGGATAAGAAGGATAA+GGG - chr1_3:57108641-57108660 None:intergenic 30.0%
!! TTTAGTCAAGTTGGATAAGA+AGG - chr1_3:57108648-57108667 None:intergenic 30.0%
AAGGTCACTCAATAGAAATT+TGG - chr1_3:57108713-57108732 None:intergenic 30.0%
AAGCACAAGAAATACAGAAA+AGG - chr1_3:57108732-57108751 None:intergenic 30.0%
ATTTCTTGTGCTTAATACCA+AGG + chr1_3:57108739-57108758 Msa0127640:intron 30.0%
CCAAATGATAACCTAAAATG+AGG - chr1_3:57108793-57108812 None:intergenic 30.0%
!!! CCTCATTTTAGGTTATCATT+TGG + chr1_3:57108790-57108809 Msa0127640:intron 30.0%
!!! CATTTTAGGTTATCATTTGG+TGG + chr1_3:57108793-57108812 Msa0127640:intron 30.0%
CTATAACTGATCCTATCTAT+TGG + chr1_3:57108939-57108958 Msa0127640:intron 30.0%
! AAACCTTTTTCCCAATAGAT+AGG - chr1_3:57108953-57108972 None:intergenic 30.0%
GTCAGAAACTGCAAAATTAA+TGG - chr1_3:57109137-57109156 None:intergenic 30.0%
!!! CAACAATTAGTCTTTGGTTT+TGG + chr1_3:57109298-57109317 Msa0127640:intron 30.0%
TTACATAATAGACAGAGAGA+TGG - chr1_3:57110020-57110039 None:intergenic 30.0%
ACACATACACAAACATGTAA+TGG - chr1_3:57110070-57110089 None:intergenic 30.0%
TGTGAACTAAAATCCATCAT+TGG - chr1_3:57110127-57110146 None:intergenic 30.0%
! GGTAGTTGTTGTTATACAAT+GGG - chr1_3:57103873-57103892 None:intergenic 30.0%
CATTGTATAACAACAACTAC+CGG + chr1_3:57103872-57103891 Msa0127640:five_prime_UTR 30.0%
TCTGTCGATATTCTATTTAG+AGG - chr1_3:57103917-57103936 None:intergenic 30.0%
AGTGACTCAACAAGATTATT+AGG + chr1_3:57103936-57103955 Msa0127640:five_prime_UTR 30.0%
TGATGAATTATGCAGAAGAA+GGG - chr1_3:57104139-57104158 None:intergenic 30.0%
!!! AGAAAGAGTTTTGAAATGGT+TGG - chr1_3:57104169-57104188 None:intergenic 30.0%
CAAAACTCTTTCTATTTACC+GGG + chr1_3:57104176-57104195 Msa0127640:five_prime_UTR 30.0%
! CACTTACCTGTAATCATTTT+GGG + chr1_3:57104295-57104314 Msa0127640:intron 30.0%
TTTAGACCCAAAATGATTAC+AGG - chr1_3:57104304-57104323 None:intergenic 30.0%
!!! TTTGCCTTGTTTTTTGGAAT+TGG + chr1_3:57104519-57104538 Msa0127640:intron 30.0%
AGATCAGAAGGTTCTTAAAA+TGG + chr1_3:57104697-57104716 Msa0127640:five_prime_UTR 30.0%
AGCTCAGAAACATAAATATC+TGG + chr1_3:57104722-57104741 Msa0127640:five_prime_UTR 30.0%
GCTCAGAAACATAAATATCT+GGG + chr1_3:57104723-57104742 Msa0127640:five_prime_UTR 30.0%
!! TACTACTGGACTTTGAAATT+TGG + chr1_3:57104755-57104774 Msa0127640:five_prime_UTR 30.0%
! TGTTTCTATGAACTTGTTTG+TGG + chr1_3:57104913-57104932 Msa0127640:CDS 30.0%
TCATTTGAACAACTAGCTAA+AGG - chr1_3:57105037-57105056 None:intergenic 30.0%
! ATGCTTAGTTTGAGCTATAT+TGG + chr1_3:57105271-57105290 Msa0127640:intron 30.0%
!! TGATGATGGCTAAATGTTAT+TGG + chr1_3:57105330-57105349 Msa0127640:intron 30.0%
AATGTTATTGGATTCTTCTC+AGG + chr1_3:57105342-57105361 Msa0127640:intron 30.0%
ATGTTATTGGATTCTTCTCA+GGG + chr1_3:57105343-57105362 Msa0127640:intron 30.0%
TTCCATAGTAGACAATAAGA+TGG - chr1_3:57105501-57105520 None:intergenic 30.0%
CATGTGATGTTCCAATTAAA+AGG + chr1_3:57105554-57105573 Msa0127640:intron 30.0%
TGTGATGTTCCAATTAAAAG+GGG + chr1_3:57105556-57105575 Msa0127640:intron 30.0%
TCATCATATTGGTATGAATG+TGG - chr1_3:57105640-57105659 None:intergenic 30.0%
! CACTTCTTTATGCGTATTTT+TGG + chr1_3:57105689-57105708 Msa0127640:intron 30.0%
! GCAAAAAGAGGCATAATTAA+CGG + chr1_3:57105729-57105748 Msa0127640:intron 30.0%
AGAGATGAATTCACAAACAT+AGG - chr1_3:57105870-57105889 None:intergenic 30.0%
ATCTACAAGAAAAATCCAAG+AGG - chr1_3:57105947-57105966 None:intergenic 30.0%
! GATTTTTCTTGTAGATACCA+TGG + chr1_3:57105951-57105970 Msa0127640:intron 30.0%
!! GCTGAATGAAGTATTTTTGA+AGG - chr1_3:57106106-57106125 None:intergenic 30.0%
AATTTCATTGTGCGTAAATG+TGG + chr1_3:57106162-57106181 Msa0127640:intron 30.0%
TTCATGACTATCACATCATT+TGG + chr1_3:57106271-57106290 Msa0127640:CDS 30.0%
! ATCTTGTGTCATTATAACCA+CGG + chr1_3:57106312-57106331 Msa0127640:CDS 30.0%
TGAAAAAGCAAAGGTTAGTA+AGG - chr1_3:57106436-57106455 None:intergenic 30.0%
GCTTTCAATTGAAAAAGCAA+AGG - chr1_3:57106445-57106464 None:intergenic 30.0%
AAAAGTAGCACCTGAAATAA+TGG - chr1_3:57106570-57106589 None:intergenic 30.0%
!! TACTTTTGCTTTTAAGAGGA+TGG + chr1_3:57106583-57106602 Msa0127640:CDS 30.0%
!! CTTTTAAGAGGATGGATATT+GGG + chr1_3:57106591-57106610 Msa0127640:CDS 30.0%
ACTAGTCAATCTTATCTAGT+TGG + chr1_3:57106646-57106665 Msa0127640:intron 30.0%
AGAAATGCAATGCAATTGAA+GGG - chr1_3:57106971-57106990 None:intergenic 30.0%
AAGAAATGCAATGCAATTGA+AGG - chr1_3:57106972-57106991 None:intergenic 30.0%
TTCAATTGCATTGCATTTCT+TGG + chr1_3:57106971-57106990 Msa0127640:CDS 30.0%
TCAATTGCATTGCATTTCTT+GGG + chr1_3:57106972-57106991 Msa0127640:CDS 30.0%
TACGAAAATTAGACTGAACT+TGG + chr1_3:57107388-57107407 Msa0127640:intron 30.0%
AAATTAGACTGAACTTGGTT+TGG + chr1_3:57107393-57107412 Msa0127640:intron 30.0%
TTCCATATTGAGTACTATGT+AGG + chr1_3:57107815-57107834 Msa0127640:intron 30.0%
TCCATATTGAGTACTATGTA+GGG + chr1_3:57107816-57107835 Msa0127640:intron 30.0%
! ATTCTTACCGTATTCTTTTG+TGG + chr1_3:57108056-57108075 Msa0127640:CDS 30.0%
ATCTGTTTAGAAGACATACT+TGG - chr1_3:57108138-57108157 None:intergenic 30.0%
AGATATAGAAAAGACATGTC+TGG - chr1_3:57108200-57108219 None:intergenic 30.0%
! ATTTTTGTCCAACTTTTCAC+AGG + chr1_3:57108228-57108247 Msa0127640:intron 30.0%
TATCTTCCTTTATGTTGGTA+TGG + chr1_3:57108289-57108308 Msa0127640:CDS 30.0%
!! AATGGAAGTTTGTTAGTGAT+AGG + chr1_3:57108330-57108349 Msa0127640:CDS 30.0%
AAGTTGGATAAGAAGGATAA+GGG - chr1_3:57108641-57108660 None:intergenic 30.0%
!! TTTAGTCAAGTTGGATAAGA+AGG - chr1_3:57108648-57108667 None:intergenic 30.0%
AAGGTCACTCAATAGAAATT+TGG - chr1_3:57108713-57108732 None:intergenic 30.0%
AAGCACAAGAAATACAGAAA+AGG - chr1_3:57108732-57108751 None:intergenic 30.0%
ATTTCTTGTGCTTAATACCA+AGG + chr1_3:57108739-57108758 Msa0127640:intron 30.0%
CCAAATGATAACCTAAAATG+AGG - chr1_3:57108793-57108812 None:intergenic 30.0%
!!! CCTCATTTTAGGTTATCATT+TGG + chr1_3:57108790-57108809 Msa0127640:intron 30.0%
!!! CATTTTAGGTTATCATTTGG+TGG + chr1_3:57108793-57108812 Msa0127640:intron 30.0%
CTATAACTGATCCTATCTAT+TGG + chr1_3:57108939-57108958 Msa0127640:intron 30.0%
! AAACCTTTTTCCCAATAGAT+AGG - chr1_3:57108953-57108972 None:intergenic 30.0%
GTCAGAAACTGCAAAATTAA+TGG - chr1_3:57109137-57109156 None:intergenic 30.0%
!!! CAACAATTAGTCTTTGGTTT+TGG + chr1_3:57109298-57109317 Msa0127640:intron 30.0%
TTACATAATAGACAGAGAGA+TGG - chr1_3:57110020-57110039 None:intergenic 30.0%
ACACATACACAAACATGTAA+TGG - chr1_3:57110070-57110089 None:intergenic 30.0%
TGTGAACTAAAATCCATCAT+TGG - chr1_3:57110127-57110146 None:intergenic 30.0%
! GTTGTTGTTATACAATGGGT+TGG - chr1_3:57103869-57103888 None:intergenic 35.0%
! CGGTAGTTGTTGTTATACAA+TGG - chr1_3:57103874-57103893 None:intergenic 35.0%
TTAGGAGTGATAATCTTCCA+CGG + chr1_3:57103954-57103973 Msa0127640:five_prime_UTR 35.0%
AGAAAGAGAGAAAATACACG+TGG - chr1_3:57104095-57104114 None:intergenic 35.0%
GTGATGAATTATGCAGAAGA+AGG - chr1_3:57104140-57104159 None:intergenic 35.0%
!!! GTTTTGAAATGGTTGGATCA+GGG - chr1_3:57104162-57104181 None:intergenic 35.0%
!!! AGTTTTGAAATGGTTGGATC+AGG - chr1_3:57104163-57104182 None:intergenic 35.0%
CAAAGAATTCGAACAGAGAA+AGG - chr1_3:57104237-57104256 None:intergenic 35.0%
CTTTCTCTGTTCGAATTCTT+TGG + chr1_3:57104235-57104254 Msa0127640:five_prime_UTR 35.0%
! GCACTTACCTGTAATCATTT+TGG + chr1_3:57104294-57104313 Msa0127640:intron 35.0%
! ATTTAAGGGTTTTCTGTAGC+AGG + chr1_3:57104333-57104352 Msa0127640:intron 35.0%
! TTTAAGGGTTTTCTGTAGCA+GGG + chr1_3:57104334-57104353 Msa0127640:intron 35.0%
ACTCATACCTAGAACCTATT+TGG - chr1_3:57104563-57104582 None:intergenic 35.0%
CTGGGATTCATTATTACTAC+TGG + chr1_3:57104741-57104760 Msa0127640:five_prime_UTR 35.0%
!!! TCTGCTTTTGAAATTTGTGG+AGG + chr1_3:57104810-57104829 Msa0127640:five_prime_UTR 35.0%
!!! CTGCTTTTGAAATTTGTGGA+GGG + chr1_3:57104811-57104830 Msa0127640:five_prime_UTR 35.0%
! AGAAACAACAGAAGCATGAT+CGG - chr1_3:57104900-57104919 None:intergenic 35.0%
TAGACAGAGCCCATAATATT+TGG - chr1_3:57105085-57105104 None:intergenic 35.0%
TGGATTCACGTTTGATCTAA+TGG + chr1_3:57105130-57105149 Msa0127640:intron 35.0%
AAGACTTATTGATCCAATGG+TGG + chr1_3:57105154-57105173 Msa0127640:intron 35.0%
TTGTGCACCATAGAAAGAAT+TGG + chr1_3:57105212-57105231 Msa0127640:intron 35.0%
AGTTCAGCCAATTCTTTCTA+TGG - chr1_3:57105222-57105241 None:intergenic 35.0%
TGGTTTCTATTGGATGATGA+TGG + chr1_3:57105316-57105335 Msa0127640:intron 35.0%
!!! GTAGTGATTTTGCTGTTTAG+TGG + chr1_3:57105379-57105398 Msa0127640:CDS 35.0%
! TACCCGGCATTGAATATAAT+AGG - chr1_3:57105466-57105485 None:intergenic 35.0%
ATGGTGCAAAATAACTTACC+CGG - chr1_3:57105482-57105501 None:intergenic 35.0%
CACCATCTTATTGTCTACTA+TGG + chr1_3:57105496-57105515 Msa0127640:intron 35.0%
! AAACATCCTCCCCTTTTAAT+TGG - chr1_3:57105568-57105587 None:intergenic 35.0%
AATTAAAAGGGGAGGATGTT+TGG + chr1_3:57105567-57105586 Msa0127640:intron 35.0%
ATTAACGGTTTACTCAATGG+CGG + chr1_3:57105744-57105763 Msa0127640:intron 35.0%
TTAACTACACTTAGTCCTCT+TGG + chr1_3:57105929-57105948 Msa0127640:intron 35.0%
!! TTTTGAAGGGGAAAACGATA+TGG - chr1_3:57106092-57106111 None:intergenic 35.0%
! ATCACATCATTTGGAGCTAT+TGG + chr1_3:57106280-57106299 Msa0127640:CDS 35.0%
! TCTTGTGTCATTATAACCAC+GGG + chr1_3:57106313-57106332 Msa0127640:CDS 35.0%
CTTATAAAAACCAACTGCAG+AGG + chr1_3:57106512-57106531 Msa0127640:intron 35.0%
GGCTCATATTTAAGTCAACA+TGG - chr1_3:57106549-57106568 None:intergenic 35.0%
!!! GTGCTACTTTTGCTTTTAAG+AGG + chr1_3:57106579-57106598 Msa0127640:CDS 35.0%
!! GCTTTTAAGAGGATGGATAT+TGG + chr1_3:57106590-57106609 Msa0127640:CDS 35.0%
!! TATAGTCTTGTATTTGGGGA+AGG + chr1_3:57106876-57106895 Msa0127640:CDS 35.0%
! TGCTTGCTACAAACAAATAC+AGG - chr1_3:57107004-57107023 None:intergenic 35.0%
TTAAAAAGCTGTACATTGGC+AGG + chr1_3:57107181-57107200 Msa0127640:CDS 35.0%
TACAAGAAATAGCCAGAACT+TGG - chr1_3:57107342-57107361 None:intergenic 35.0%
AAACTGTAGAGTGTAGACAT+TGG - chr1_3:57107369-57107388 None:intergenic 35.0%
AGATGTAATTCCACAAAGCT+TGG + chr1_3:57107607-57107626 Msa0127640:intron 35.0%
GATGTAATTCCACAAAGCTT+GGG + chr1_3:57107608-57107627 Msa0127640:intron 35.0%
ATGTAATTCCACAAAGCTTG+GGG + chr1_3:57107609-57107628 Msa0127640:intron 35.0%
TCCCTACATAGTACTCAATA+TGG - chr1_3:57107820-57107839 None:intergenic 35.0%
AAAGAATGCCTGTGAAAAGT+TGG - chr1_3:57108239-57108258 None:intergenic 35.0%
GATAAAGATCTCAGCAACAA+AGG - chr1_3:57108273-57108292 None:intergenic 35.0%
!! CTTCCATTTTTCAATGTCCA+GGG - chr1_3:57108318-57108337 None:intergenic 35.0%
!! ACTTCCATTTTTCAATGTCC+AGG - chr1_3:57108319-57108338 None:intergenic 35.0%
ATGTCCTAAGTTCTCTTTAC+TGG + chr1_3:57108354-57108373 Msa0127640:intron 35.0%
ATCACCAGTAAAGAGAACTT+AGG - chr1_3:57108361-57108380 None:intergenic 35.0%
! CATCTTTTCATGTCCATAGA+TGG + chr1_3:57108432-57108451 Msa0127640:intron 35.0%
CAGTTCTATCATACCATCTA+TGG - chr1_3:57108448-57108467 None:intergenic 35.0%
TTGTTGGGTCTAATACTTCT+TGG + chr1_3:57108596-57108615 Msa0127640:CDS 35.0%
! CAAGTTGGATAAGAAGGATA+AGG - chr1_3:57108642-57108661 None:intergenic 35.0%
TATCCAAAACCAAAACTCAG+TGG - chr1_3:57108879-57108898 None:intergenic 35.0%
GATCCTATCTATTGGGAAAA+AGG + chr1_3:57108947-57108966 Msa0127640:intron 35.0%
CTATTGGGAAAAAGGTTTGA+TGG + chr1_3:57108955-57108974 Msa0127640:intron 35.0%
! GTTGTTGTTGTCACAAATGA+CGG + chr1_3:57108983-57109002 Msa0127640:intron 35.0%
GTGAACTGCATCAAATAGAT+AGG - chr1_3:57109030-57109049 None:intergenic 35.0%
ATAAAATAAACCGTGCAGTG+AGG - chr1_3:57109187-57109206 None:intergenic 35.0%
!! TTCCTGCAACAATTAGTCTT+TGG + chr1_3:57109292-57109311 Msa0127640:intron 35.0%
AACCAAAGACTAATTGTTGC+AGG - chr1_3:57109297-57109316 None:intergenic 35.0%
! AGTGGGACAATGAATGATTT+TGG - chr1_3:57109596-57109615 None:intergenic 35.0%
TGAACGCAATGGTAATCAAT+GGG + chr1_3:57109805-57109824 Msa0127640:CDS 35.0%
CTCAACAAAATTTCACTACC+AGG - chr1_3:57109967-57109986 None:intergenic 35.0%
! GTTGTTGTTATACAATGGGT+TGG - chr1_3:57103869-57103888 None:intergenic 35.0%
! CGGTAGTTGTTGTTATACAA+TGG - chr1_3:57103874-57103893 None:intergenic 35.0%
TTAGGAGTGATAATCTTCCA+CGG + chr1_3:57103954-57103973 Msa0127640:five_prime_UTR 35.0%
AGAAAGAGAGAAAATACACG+TGG - chr1_3:57104095-57104114 None:intergenic 35.0%
GTGATGAATTATGCAGAAGA+AGG - chr1_3:57104140-57104159 None:intergenic 35.0%
!!! GTTTTGAAATGGTTGGATCA+GGG - chr1_3:57104162-57104181 None:intergenic 35.0%
!!! AGTTTTGAAATGGTTGGATC+AGG - chr1_3:57104163-57104182 None:intergenic 35.0%
CAAAGAATTCGAACAGAGAA+AGG - chr1_3:57104237-57104256 None:intergenic 35.0%
CTTTCTCTGTTCGAATTCTT+TGG + chr1_3:57104235-57104254 Msa0127640:five_prime_UTR 35.0%
! GCACTTACCTGTAATCATTT+TGG + chr1_3:57104294-57104313 Msa0127640:intron 35.0%
! ATTTAAGGGTTTTCTGTAGC+AGG + chr1_3:57104333-57104352 Msa0127640:intron 35.0%
! TTTAAGGGTTTTCTGTAGCA+GGG + chr1_3:57104334-57104353 Msa0127640:intron 35.0%
ACTCATACCTAGAACCTATT+TGG - chr1_3:57104563-57104582 None:intergenic 35.0%
CTGGGATTCATTATTACTAC+TGG + chr1_3:57104741-57104760 Msa0127640:five_prime_UTR 35.0%
!!! TCTGCTTTTGAAATTTGTGG+AGG + chr1_3:57104810-57104829 Msa0127640:five_prime_UTR 35.0%
!!! CTGCTTTTGAAATTTGTGGA+GGG + chr1_3:57104811-57104830 Msa0127640:five_prime_UTR 35.0%
! AGAAACAACAGAAGCATGAT+CGG - chr1_3:57104900-57104919 None:intergenic 35.0%
TAGACAGAGCCCATAATATT+TGG - chr1_3:57105085-57105104 None:intergenic 35.0%
TGGATTCACGTTTGATCTAA+TGG + chr1_3:57105130-57105149 Msa0127640:intron 35.0%
AAGACTTATTGATCCAATGG+TGG + chr1_3:57105154-57105173 Msa0127640:intron 35.0%
TTGTGCACCATAGAAAGAAT+TGG + chr1_3:57105212-57105231 Msa0127640:intron 35.0%
AGTTCAGCCAATTCTTTCTA+TGG - chr1_3:57105222-57105241 None:intergenic 35.0%
TGGTTTCTATTGGATGATGA+TGG + chr1_3:57105316-57105335 Msa0127640:intron 35.0%
!!! GTAGTGATTTTGCTGTTTAG+TGG + chr1_3:57105379-57105398 Msa0127640:CDS 35.0%
! TACCCGGCATTGAATATAAT+AGG - chr1_3:57105466-57105485 None:intergenic 35.0%
ATGGTGCAAAATAACTTACC+CGG - chr1_3:57105482-57105501 None:intergenic 35.0%
CACCATCTTATTGTCTACTA+TGG + chr1_3:57105496-57105515 Msa0127640:intron 35.0%
! AAACATCCTCCCCTTTTAAT+TGG - chr1_3:57105568-57105587 None:intergenic 35.0%
AATTAAAAGGGGAGGATGTT+TGG + chr1_3:57105567-57105586 Msa0127640:intron 35.0%
ATTAACGGTTTACTCAATGG+CGG + chr1_3:57105744-57105763 Msa0127640:intron 35.0%
TTAACTACACTTAGTCCTCT+TGG + chr1_3:57105929-57105948 Msa0127640:intron 35.0%
!! TTTTGAAGGGGAAAACGATA+TGG - chr1_3:57106092-57106111 None:intergenic 35.0%
! ATCACATCATTTGGAGCTAT+TGG + chr1_3:57106280-57106299 Msa0127640:CDS 35.0%
! TCTTGTGTCATTATAACCAC+GGG + chr1_3:57106313-57106332 Msa0127640:CDS 35.0%
CTTATAAAAACCAACTGCAG+AGG + chr1_3:57106512-57106531 Msa0127640:intron 35.0%
GGCTCATATTTAAGTCAACA+TGG - chr1_3:57106549-57106568 None:intergenic 35.0%
!!! GTGCTACTTTTGCTTTTAAG+AGG + chr1_3:57106579-57106598 Msa0127640:CDS 35.0%
!! GCTTTTAAGAGGATGGATAT+TGG + chr1_3:57106590-57106609 Msa0127640:CDS 35.0%
!! TATAGTCTTGTATTTGGGGA+AGG + chr1_3:57106876-57106895 Msa0127640:CDS 35.0%
! TGCTTGCTACAAACAAATAC+AGG - chr1_3:57107004-57107023 None:intergenic 35.0%
TTAAAAAGCTGTACATTGGC+AGG + chr1_3:57107181-57107200 Msa0127640:CDS 35.0%
TACAAGAAATAGCCAGAACT+TGG - chr1_3:57107342-57107361 None:intergenic 35.0%
AAACTGTAGAGTGTAGACAT+TGG - chr1_3:57107369-57107388 None:intergenic 35.0%
AGATGTAATTCCACAAAGCT+TGG + chr1_3:57107607-57107626 Msa0127640:intron 35.0%
GATGTAATTCCACAAAGCTT+GGG + chr1_3:57107608-57107627 Msa0127640:intron 35.0%
ATGTAATTCCACAAAGCTTG+GGG + chr1_3:57107609-57107628 Msa0127640:intron 35.0%
TCCCTACATAGTACTCAATA+TGG - chr1_3:57107820-57107839 None:intergenic 35.0%
AAAGAATGCCTGTGAAAAGT+TGG - chr1_3:57108239-57108258 None:intergenic 35.0%
GATAAAGATCTCAGCAACAA+AGG - chr1_3:57108273-57108292 None:intergenic 35.0%
!! CTTCCATTTTTCAATGTCCA+GGG - chr1_3:57108318-57108337 None:intergenic 35.0%
!! ACTTCCATTTTTCAATGTCC+AGG - chr1_3:57108319-57108338 None:intergenic 35.0%
ATGTCCTAAGTTCTCTTTAC+TGG + chr1_3:57108354-57108373 Msa0127640:intron 35.0%
ATCACCAGTAAAGAGAACTT+AGG - chr1_3:57108361-57108380 None:intergenic 35.0%
! CATCTTTTCATGTCCATAGA+TGG + chr1_3:57108432-57108451 Msa0127640:intron 35.0%
CAGTTCTATCATACCATCTA+TGG - chr1_3:57108448-57108467 None:intergenic 35.0%
TTGTTGGGTCTAATACTTCT+TGG + chr1_3:57108596-57108615 Msa0127640:CDS 35.0%
! CAAGTTGGATAAGAAGGATA+AGG - chr1_3:57108642-57108661 None:intergenic 35.0%
TATCCAAAACCAAAACTCAG+TGG - chr1_3:57108879-57108898 None:intergenic 35.0%
GATCCTATCTATTGGGAAAA+AGG + chr1_3:57108947-57108966 Msa0127640:intron 35.0%
CTATTGGGAAAAAGGTTTGA+TGG + chr1_3:57108955-57108974 Msa0127640:intron 35.0%
! GTTGTTGTTGTCACAAATGA+CGG + chr1_3:57108983-57109002 Msa0127640:intron 35.0%
GTGAACTGCATCAAATAGAT+AGG - chr1_3:57109030-57109049 None:intergenic 35.0%
ATAAAATAAACCGTGCAGTG+AGG - chr1_3:57109187-57109206 None:intergenic 35.0%
!! TTCCTGCAACAATTAGTCTT+TGG + chr1_3:57109292-57109311 Msa0127640:intron 35.0%
AACCAAAGACTAATTGTTGC+AGG - chr1_3:57109297-57109316 None:intergenic 35.0%
! AGTGGGACAATGAATGATTT+TGG - chr1_3:57109596-57109615 None:intergenic 35.0%
TGAACGCAATGGTAATCAAT+GGG + chr1_3:57109805-57109824 Msa0127640:CDS 35.0%
!! GAGAAAGTTCTGGAAGACAA+TGG - chr1_3:57104064-57104083 None:intergenic 40.0%
ATTTACCGGGAATTCGAACT+AGG + chr1_3:57104189-57104208 Msa0127640:five_prime_UTR 40.0%
TTTACCGGGAATTCGAACTA+GGG + chr1_3:57104190-57104209 Msa0127640:five_prime_UTR 40.0%
! CTTGTGTTGATGAGATCAGA+AGG + chr1_3:57104685-57104704 Msa0127640:five_prime_UTR 40.0%
!!! CTTTTGAAATTTGTGGAGGG+TGG + chr1_3:57104814-57104833 Msa0127640:five_prime_UTR 40.0%
TACAATCAAAAGGGCAGTGA+TGG - chr1_3:57105002-57105021 None:intergenic 40.0%
GGCAAGACTTATTGATCCAA+TGG + chr1_3:57105151-57105170 Msa0127640:intron 40.0%
!!! GTGATTTTGCTGTTTAGTGG+TGG + chr1_3:57105382-57105401 Msa0127640:CDS 40.0%
TGAATATAATAGGCGGCAGA+AGG - chr1_3:57105456-57105475 None:intergenic 40.0%
! CCGGCATTGAATATAATAGG+CGG - chr1_3:57105463-57105482 None:intergenic 40.0%
CCGCCTATTATATTCAATGC+CGG + chr1_3:57105460-57105479 Msa0127640:CDS 40.0%
CGCCTATTATATTCAATGCC+GGG + chr1_3:57105461-57105480 Msa0127640:CDS 40.0%
GATGTTCCAATTAAAAGGGG+AGG + chr1_3:57105559-57105578 Msa0127640:intron 40.0%
GCTCTTTACGAACCATAAAC+CGG + chr1_3:57105595-57105614 Msa0127640:intron 40.0%
!! TTCATTTAGACGCCGGTTTA+TGG - chr1_3:57105610-57105629 None:intergenic 40.0%
ACAGATCTTCATTTAGACGC+CGG - chr1_3:57105617-57105636 None:intergenic 40.0%
CAGAAAAGACTAATCTGCCA+TGG - chr1_3:57105971-57105990 None:intergenic 40.0%
! ACAGTTGATGCTCATGTCAT+GGG - chr1_3:57106043-57106062 None:intergenic 40.0%
! TACAGTTGATGCTCATGTCA+TGG - chr1_3:57106044-57106063 None:intergenic 40.0%
TTCATTGTGCGTAAATGTGG+TGG + chr1_3:57106165-57106184 Msa0127640:intron 40.0%
TCATTGTGCGTAAATGTGGT+GGG + chr1_3:57106166-57106185 Msa0127640:intron 40.0%
AACTGTGATGCATTAGTTGC+TGG - chr1_3:57106797-57106816 None:intergenic 40.0%
GACCTTATAAATGACGATGC+AGG + chr1_3:57106824-57106843 Msa0127640:intron 40.0%
CACCTGCATCGTCATTTATA+AGG - chr1_3:57106829-57106848 None:intergenic 40.0%
TGCATTGAAAAGAACCACTG+AGG - chr1_3:57106919-57106938 None:intergenic 40.0%
ATGCAATTGAAGGGTTCAGT+TGG - chr1_3:57106962-57106981 None:intergenic 40.0%
!! GCTTGATGTGACTTGTGTTT+TGG + chr1_3:57107107-57107126 Msa0127640:intron 40.0%
! GTACATTGGCAGGTATTTTC+TGG + chr1_3:57107191-57107210 Msa0127640:intron 40.0%
GTATGCGAATAACCAAGTTC+TGG + chr1_3:57107327-57107346 Msa0127640:intron 40.0%
AAATGAGCTCATCACTTAGC+TGG + chr1_3:57107495-57107514 Msa0127640:intron 40.0%
TGTAATTCCACAAAGCTTGG+GGG + chr1_3:57107610-57107629 Msa0127640:intron 40.0%
ACAAATACACAGAGAGACAC+GGG - chr1_3:57107783-57107802 None:intergenic 40.0%
GACAAATACACAGAGAGACA+CGG - chr1_3:57107784-57107803 None:intergenic 40.0%
GGTTGCTCTTATGATGCTAA+TGG + chr1_3:57107901-57107920 Msa0127640:CDS 40.0%
ATGCAGTTAACCTATCTGAG+TGG + chr1_3:57108032-57108051 Msa0127640:intron 40.0%
ATGCCCTGGACATTGAAAAA+TGG + chr1_3:57108312-57108331 Msa0127640:CDS 40.0%
CAGTCAAACCAAGTAGTACA+AGG - chr1_3:57108486-57108505 None:intergenic 40.0%
AGCTGCAAGTTCAGTATTGT+TGG + chr1_3:57108580-57108599 Msa0127640:CDS 40.0%
GCTGCAAGTTCAGTATTGTT+GGG + chr1_3:57108581-57108600 Msa0127640:CDS 40.0%
TTTCCTTCAGACAGCAAGTA+TGG + chr1_3:57108687-57108706 Msa0127640:intron 40.0%
! CTTTTGCTTCCCCTCATTTT+AGG + chr1_3:57108779-57108798 Msa0127640:intron 40.0%
!! TATGAGAGGTGCTGTTTCAA+TGG + chr1_3:57108824-57108843 Msa0127640:CDS 40.0%
AATGGCACTTGCGTATAATC+AGG + chr1_3:57108842-57108861 Msa0127640:CDS 40.0%
!!! GTACCACTGAGTTTTGGTTT+TGG + chr1_3:57108873-57108892 Msa0127640:intron 40.0%
TTATTGTTTGGCTGAAGCAG+TGG - chr1_3:57108915-57108934 None:intergenic 40.0%
TTTGATGCAGTTCACCATGT+CGG + chr1_3:57109035-57109054 Msa0127640:intron 40.0%
! ATTAGTTTCTCCTCACTGCA+CGG + chr1_3:57109174-57109193 Msa0127640:intron 40.0%
!! GGTTTTGGTCCATGAAATGT+AGG + chr1_3:57109313-57109332 Msa0127640:intron 40.0%
!!! CTGCTTGTGATTTTAGGATG+AGG - chr1_3:57109548-57109567 None:intergenic 40.0%
!! GTCATGCTGCTTGTGATTTT+AGG - chr1_3:57109554-57109573 None:intergenic 40.0%
!!! TTTTGGAGTAGTCGATTCTG+TGG - chr1_3:57109579-57109598 None:intergenic 40.0%
TCATTCATTGTCCCACTTCT+AGG + chr1_3:57109599-57109618 Msa0127640:CDS 40.0%
AAGATCAGCTTCAGAATCTC+GGG - chr1_3:57109630-57109649 None:intergenic 40.0%
CAAGATCAGCTTCAGAATCT+CGG - chr1_3:57109631-57109650 None:intergenic 40.0%
!! GATTCTGAAGCTGATCTTGA+AGG + chr1_3:57109632-57109651 Msa0127640:CDS 40.0%
!! GAGTTGATAGTAAAGCACGA+AGG - chr1_3:57109682-57109701 None:intergenic 40.0%
AATCGATGAACAGTGTGAGT+TGG - chr1_3:57109704-57109723 None:intergenic 40.0%
! CTCACACTGTTCATCGATTA+TGG + chr1_3:57109705-57109724 Msa0127640:CDS 40.0%
! TCATTCATGCGTCCTGTTTT+TGG + chr1_3:57109743-57109762 Msa0127640:CDS 40.0%
TGATTACCATTGCGTTCACT+TGG - chr1_3:57109803-57109822 None:intergenic 40.0%
GTGAACGCAATGGTAATCAA+TGG + chr1_3:57109804-57109823 Msa0127640:CDS 40.0%
GAACGCAATGGTAATCAATG+GGG + chr1_3:57109806-57109825 Msa0127640:CDS 40.0%
! TTTGAGTAGCTAGTCTGAGA+TGG + chr1_3:57109990-57110009 Msa0127640:three_prime_UTR 40.0%
CTATCTACACTCTCCAATGA+TGG + chr1_3:57110111-57110130 Msa0127640:three_prime_UTR 40.0%
!! GAGAAAGTTCTGGAAGACAA+TGG - chr1_3:57104064-57104083 None:intergenic 40.0%
ATTTACCGGGAATTCGAACT+AGG + chr1_3:57104189-57104208 Msa0127640:five_prime_UTR 40.0%
TTTACCGGGAATTCGAACTA+GGG + chr1_3:57104190-57104209 Msa0127640:five_prime_UTR 40.0%
! CTTGTGTTGATGAGATCAGA+AGG + chr1_3:57104685-57104704 Msa0127640:five_prime_UTR 40.0%
!!! CTTTTGAAATTTGTGGAGGG+TGG + chr1_3:57104814-57104833 Msa0127640:five_prime_UTR 40.0%
TACAATCAAAAGGGCAGTGA+TGG - chr1_3:57105002-57105021 None:intergenic 40.0%
GGCAAGACTTATTGATCCAA+TGG + chr1_3:57105151-57105170 Msa0127640:intron 40.0%
!!! GTGATTTTGCTGTTTAGTGG+TGG + chr1_3:57105382-57105401 Msa0127640:CDS 40.0%
TGAATATAATAGGCGGCAGA+AGG - chr1_3:57105456-57105475 None:intergenic 40.0%
! CCGGCATTGAATATAATAGG+CGG - chr1_3:57105463-57105482 None:intergenic 40.0%
CCGCCTATTATATTCAATGC+CGG + chr1_3:57105460-57105479 Msa0127640:CDS 40.0%
CGCCTATTATATTCAATGCC+GGG + chr1_3:57105461-57105480 Msa0127640:CDS 40.0%
GATGTTCCAATTAAAAGGGG+AGG + chr1_3:57105559-57105578 Msa0127640:intron 40.0%
GCTCTTTACGAACCATAAAC+CGG + chr1_3:57105595-57105614 Msa0127640:intron 40.0%
!! TTCATTTAGACGCCGGTTTA+TGG - chr1_3:57105610-57105629 None:intergenic 40.0%
ACAGATCTTCATTTAGACGC+CGG - chr1_3:57105617-57105636 None:intergenic 40.0%
CAGAAAAGACTAATCTGCCA+TGG - chr1_3:57105971-57105990 None:intergenic 40.0%
! ACAGTTGATGCTCATGTCAT+GGG - chr1_3:57106043-57106062 None:intergenic 40.0%
! TACAGTTGATGCTCATGTCA+TGG - chr1_3:57106044-57106063 None:intergenic 40.0%
TTCATTGTGCGTAAATGTGG+TGG + chr1_3:57106165-57106184 Msa0127640:intron 40.0%
TCATTGTGCGTAAATGTGGT+GGG + chr1_3:57106166-57106185 Msa0127640:intron 40.0%
AACTGTGATGCATTAGTTGC+TGG - chr1_3:57106797-57106816 None:intergenic 40.0%
GACCTTATAAATGACGATGC+AGG + chr1_3:57106824-57106843 Msa0127640:intron 40.0%
CACCTGCATCGTCATTTATA+AGG - chr1_3:57106829-57106848 None:intergenic 40.0%
TGCATTGAAAAGAACCACTG+AGG - chr1_3:57106919-57106938 None:intergenic 40.0%
ATGCAATTGAAGGGTTCAGT+TGG - chr1_3:57106962-57106981 None:intergenic 40.0%
!! GCTTGATGTGACTTGTGTTT+TGG + chr1_3:57107107-57107126 Msa0127640:intron 40.0%
! GTACATTGGCAGGTATTTTC+TGG + chr1_3:57107191-57107210 Msa0127640:intron 40.0%
GTATGCGAATAACCAAGTTC+TGG + chr1_3:57107327-57107346 Msa0127640:intron 40.0%
AAATGAGCTCATCACTTAGC+TGG + chr1_3:57107495-57107514 Msa0127640:intron 40.0%
TGTAATTCCACAAAGCTTGG+GGG + chr1_3:57107610-57107629 Msa0127640:intron 40.0%
ACAAATACACAGAGAGACAC+GGG - chr1_3:57107783-57107802 None:intergenic 40.0%
GACAAATACACAGAGAGACA+CGG - chr1_3:57107784-57107803 None:intergenic 40.0%
GGTTGCTCTTATGATGCTAA+TGG + chr1_3:57107901-57107920 Msa0127640:CDS 40.0%
ATGCAGTTAACCTATCTGAG+TGG + chr1_3:57108032-57108051 Msa0127640:intron 40.0%
ATGCCCTGGACATTGAAAAA+TGG + chr1_3:57108312-57108331 Msa0127640:CDS 40.0%
CAGTCAAACCAAGTAGTACA+AGG - chr1_3:57108486-57108505 None:intergenic 40.0%
AGCTGCAAGTTCAGTATTGT+TGG + chr1_3:57108580-57108599 Msa0127640:CDS 40.0%
GCTGCAAGTTCAGTATTGTT+GGG + chr1_3:57108581-57108600 Msa0127640:CDS 40.0%
TTTCCTTCAGACAGCAAGTA+TGG + chr1_3:57108687-57108706 Msa0127640:intron 40.0%
! CTTTTGCTTCCCCTCATTTT+AGG + chr1_3:57108779-57108798 Msa0127640:intron 40.0%
!! TATGAGAGGTGCTGTTTCAA+TGG + chr1_3:57108824-57108843 Msa0127640:CDS 40.0%
AATGGCACTTGCGTATAATC+AGG + chr1_3:57108842-57108861 Msa0127640:CDS 40.0%
!!! GTACCACTGAGTTTTGGTTT+TGG + chr1_3:57108873-57108892 Msa0127640:intron 40.0%
TTATTGTTTGGCTGAAGCAG+TGG - chr1_3:57108915-57108934 None:intergenic 40.0%
TTTGATGCAGTTCACCATGT+CGG + chr1_3:57109035-57109054 Msa0127640:intron 40.0%
! ATTAGTTTCTCCTCACTGCA+CGG + chr1_3:57109174-57109193 Msa0127640:intron 40.0%
!! GGTTTTGGTCCATGAAATGT+AGG + chr1_3:57109313-57109332 Msa0127640:intron 40.0%
!!! CTGCTTGTGATTTTAGGATG+AGG - chr1_3:57109548-57109567 None:intergenic 40.0%
!! GTCATGCTGCTTGTGATTTT+AGG - chr1_3:57109554-57109573 None:intergenic 40.0%
!!! TTTTGGAGTAGTCGATTCTG+TGG - chr1_3:57109579-57109598 None:intergenic 40.0%
TCATTCATTGTCCCACTTCT+AGG + chr1_3:57109599-57109618 Msa0127640:CDS 40.0%
AAGATCAGCTTCAGAATCTC+GGG - chr1_3:57109630-57109649 None:intergenic 40.0%
CAAGATCAGCTTCAGAATCT+CGG - chr1_3:57109631-57109650 None:intergenic 40.0%
!! GATTCTGAAGCTGATCTTGA+AGG + chr1_3:57109632-57109651 Msa0127640:CDS 40.0%
!! GAGTTGATAGTAAAGCACGA+AGG - chr1_3:57109682-57109701 None:intergenic 40.0%
AATCGATGAACAGTGTGAGT+TGG - chr1_3:57109704-57109723 None:intergenic 40.0%
! CTCACACTGTTCATCGATTA+TGG + chr1_3:57109705-57109724 Msa0127640:CDS 40.0%
! TCATTCATGCGTCCTGTTTT+TGG + chr1_3:57109743-57109762 Msa0127640:CDS 40.0%
TGATTACCATTGCGTTCACT+TGG - chr1_3:57109803-57109822 None:intergenic 40.0%
GTGAACGCAATGGTAATCAA+TGG + chr1_3:57109804-57109823 Msa0127640:CDS 40.0%
GAACGCAATGGTAATCAATG+GGG + chr1_3:57109806-57109825 Msa0127640:CDS 40.0%
CTATCTACACTCTCCAATGA+TGG + chr1_3:57110111-57110130 Msa0127640:three_prime_UTR 40.0%
!!! TGTTTGTTTTTGAGCTGCCG+TGG - chr1_3:57103974-57103993 None:intergenic 45.0%
! AGCAACGCGTGATGATGAAT+CGG - chr1_3:57104001-57104020 None:intergenic 45.0%
GGAGAGAGATGAGAAAGTTC+TGG - chr1_3:57104074-57104093 None:intergenic 45.0%
CAATCCCTAGTTCGAATTCC+CGG - chr1_3:57104197-57104216 None:intergenic 45.0%
! AACAGAAGCATGATCGGAAG+TGG - chr1_3:57104894-57104913 None:intergenic 45.0%
CTGTGTGCTTGTATTGTCCT+TGG + chr1_3:57104941-57104960 Msa0127640:CDS 45.0%
ATCTTCTCGAGGAGAATCGA+TGG + chr1_3:57104966-57104985 Msa0127640:CDS 45.0%
CGCAAGTATGTTGTCTACAC+TGG + chr1_3:57105110-57105129 Msa0127640:intron 45.0%
! CACAAGCTTGTTTCCACCAT+TGG - chr1_3:57105170-57105189 None:intergenic 45.0%
! TCTTCTCAGGGTATTTGCAC+TGG + chr1_3:57105355-57105374 Msa0127640:intron 45.0%
!! CTCAATGGCGGAGAAGTTTT+TGG + chr1_3:57105756-57105775 Msa0127640:intron 45.0%
TAGACATGTTCCTCTGCAGT+TGG - chr1_3:57106525-57106544 None:intergenic 45.0%
GATATTGGGCCACTGGAAAT+CGG + chr1_3:57106605-57106624 Msa0127640:CDS 45.0%
!! AGATAATCGCCGATTTCCAG+TGG - chr1_3:57106617-57106636 None:intergenic 45.0%
CTGGAAATCGGCGATTATCT+AGG + chr1_3:57106617-57106636 Msa0127640:CDS 45.0%
TGTGCAAACAGAGTCTGTTG+CGG - chr1_3:57106737-57106756 None:intergenic 45.0%
AGACTCTGTTTGCACATTGC+AGG + chr1_3:57106741-57106760 Msa0127640:CDS 45.0%
TGTGAATGATGCTACCTCAG+TGG + chr1_3:57106902-57106921 Msa0127640:CDS 45.0%
TTTGTAGCAAGCACACTCCT+TGG + chr1_3:57107011-57107030 Msa0127640:CDS 45.0%
!! TGAGAGTGCTAGACAGAGAA+AGG - chr1_3:57107051-57107070 None:intergenic 45.0%
ATTTCTATCACCTCGCAGAC+AGG + chr1_3:57107138-57107157 Msa0127640:intron 45.0%
!! CTATCATTCTGGCTTGAAGC+AGG - chr1_3:57107450-57107469 None:intergenic 45.0%
CTGCTTCAAGCCAGAATGAT+AGG + chr1_3:57107448-57107467 Msa0127640:intron 45.0%
GGTAAGAATGCCACTCAGAT+AGG - chr1_3:57108045-57108064 None:intergenic 45.0%
GATCTCAGCAACAAAGGACA+AGG - chr1_3:57108267-57108286 None:intergenic 45.0%
GGGCATCCATACCAACATAA+AGG - chr1_3:57108298-57108317 None:intergenic 45.0%
TTATGTTGGTATGGATGCCC+TGG + chr1_3:57108298-57108317 Msa0127640:CDS 45.0%
GAAGCAGTCCTTGTACTACT+TGG + chr1_3:57108475-57108494 Msa0127640:intron 45.0%
TCCTATTCTTGTGCCACACT+TGG + chr1_3:57108530-57108549 Msa0127640:intron 45.0%
ACCAAGTGTGGCACAAGAAT+AGG - chr1_3:57108534-57108553 None:intergenic 45.0%
CTATAGATGTTCCAGGACTG+CGG - chr1_3:57108562-57108581 None:intergenic 45.0%
CTTGCAGCTATAGATGTTCC+AGG - chr1_3:57108569-57108588 None:intergenic 45.0%
AGACACTTGTCAGCATACCT+TGG - chr1_3:57108759-57108778 None:intergenic 45.0%
! TAGGTTATCATTTGGTGGGC+TGG + chr1_3:57108798-57108817 Msa0127640:intron 45.0%
! TGAGCAGTACCACTGAGTTT+TGG + chr1_3:57108867-57108886 Msa0127640:intron 45.0%
TTGATGCAGTTCACCATGTC+GGG + chr1_3:57109036-57109055 Msa0127640:intron 45.0%
GCTGAAAAGGACAACAGTGA+TGG - chr1_3:57109103-57109122 None:intergenic 45.0%
! TGTTGTCCTTTTCAGCACAG+TGG + chr1_3:57109107-57109126 Msa0127640:CDS 45.0%
GTGCAGTGAGGAGAAACTAA+TGG - chr1_3:57109175-57109194 None:intergenic 45.0%
! TGCTGACTAAGCCACTCATA+AGG + chr1_3:57109513-57109532 Msa0127640:CDS 45.0%
! GGTAGTAGAAGCCTTATGAG+TGG - chr1_3:57109527-57109546 None:intergenic 45.0%
TGTTCGGTCGGTGAATTTCA+TGG - chr1_3:57109658-57109677 None:intergenic 45.0%
AGTAAAGCACGAAGGCTGTT+CGG - chr1_3:57109674-57109693 None:intergenic 45.0%
!!! TTCATGCGTCCTGTTTTTGG+TGG + chr1_3:57109746-57109765 Msa0127640:CDS 45.0%
AAACCTCTGCCACCAAAAAC+AGG - chr1_3:57109758-57109777 None:intergenic 45.0%
!!! GGTTTTGTTCCTGTAGAACC+TGG + chr1_3:57109773-57109792 Msa0127640:CDS 45.0%
!!! TGTTTGTTTTTGAGCTGCCG+TGG - chr1_3:57103974-57103993 None:intergenic 45.0%
! AGCAACGCGTGATGATGAAT+CGG - chr1_3:57104001-57104020 None:intergenic 45.0%
GGAGAGAGATGAGAAAGTTC+TGG - chr1_3:57104074-57104093 None:intergenic 45.0%
CAATCCCTAGTTCGAATTCC+CGG - chr1_3:57104197-57104216 None:intergenic 45.0%
! AACAGAAGCATGATCGGAAG+TGG - chr1_3:57104894-57104913 None:intergenic 45.0%
CTGTGTGCTTGTATTGTCCT+TGG + chr1_3:57104941-57104960 Msa0127640:CDS 45.0%
ATCTTCTCGAGGAGAATCGA+TGG + chr1_3:57104966-57104985 Msa0127640:CDS 45.0%
CGCAAGTATGTTGTCTACAC+TGG + chr1_3:57105110-57105129 Msa0127640:intron 45.0%
! CACAAGCTTGTTTCCACCAT+TGG - chr1_3:57105170-57105189 None:intergenic 45.0%
! TCTTCTCAGGGTATTTGCAC+TGG + chr1_3:57105355-57105374 Msa0127640:intron 45.0%
!! CTCAATGGCGGAGAAGTTTT+TGG + chr1_3:57105756-57105775 Msa0127640:intron 45.0%
TAGACATGTTCCTCTGCAGT+TGG - chr1_3:57106525-57106544 None:intergenic 45.0%
GATATTGGGCCACTGGAAAT+CGG + chr1_3:57106605-57106624 Msa0127640:CDS 45.0%
!! AGATAATCGCCGATTTCCAG+TGG - chr1_3:57106617-57106636 None:intergenic 45.0%
CTGGAAATCGGCGATTATCT+AGG + chr1_3:57106617-57106636 Msa0127640:CDS 45.0%
TGTGCAAACAGAGTCTGTTG+CGG - chr1_3:57106737-57106756 None:intergenic 45.0%
AGACTCTGTTTGCACATTGC+AGG + chr1_3:57106741-57106760 Msa0127640:CDS 45.0%
TGTGAATGATGCTACCTCAG+TGG + chr1_3:57106902-57106921 Msa0127640:CDS 45.0%
TTTGTAGCAAGCACACTCCT+TGG + chr1_3:57107011-57107030 Msa0127640:CDS 45.0%
!! TGAGAGTGCTAGACAGAGAA+AGG - chr1_3:57107051-57107070 None:intergenic 45.0%
ATTTCTATCACCTCGCAGAC+AGG + chr1_3:57107138-57107157 Msa0127640:intron 45.0%
!! CTATCATTCTGGCTTGAAGC+AGG - chr1_3:57107450-57107469 None:intergenic 45.0%
CTGCTTCAAGCCAGAATGAT+AGG + chr1_3:57107448-57107467 Msa0127640:intron 45.0%
GGTAAGAATGCCACTCAGAT+AGG - chr1_3:57108045-57108064 None:intergenic 45.0%
GATCTCAGCAACAAAGGACA+AGG - chr1_3:57108267-57108286 None:intergenic 45.0%
GGGCATCCATACCAACATAA+AGG - chr1_3:57108298-57108317 None:intergenic 45.0%
TTATGTTGGTATGGATGCCC+TGG + chr1_3:57108298-57108317 Msa0127640:CDS 45.0%
GAAGCAGTCCTTGTACTACT+TGG + chr1_3:57108475-57108494 Msa0127640:intron 45.0%
TCCTATTCTTGTGCCACACT+TGG + chr1_3:57108530-57108549 Msa0127640:intron 45.0%
ACCAAGTGTGGCACAAGAAT+AGG - chr1_3:57108534-57108553 None:intergenic 45.0%
CTATAGATGTTCCAGGACTG+CGG - chr1_3:57108562-57108581 None:intergenic 45.0%
CTTGCAGCTATAGATGTTCC+AGG - chr1_3:57108569-57108588 None:intergenic 45.0%
AGACACTTGTCAGCATACCT+TGG - chr1_3:57108759-57108778 None:intergenic 45.0%
! TAGGTTATCATTTGGTGGGC+TGG + chr1_3:57108798-57108817 Msa0127640:intron 45.0%
! TGAGCAGTACCACTGAGTTT+TGG + chr1_3:57108867-57108886 Msa0127640:intron 45.0%
TTGATGCAGTTCACCATGTC+GGG + chr1_3:57109036-57109055 Msa0127640:intron 45.0%
GCTGAAAAGGACAACAGTGA+TGG - chr1_3:57109103-57109122 None:intergenic 45.0%
! TGTTGTCCTTTTCAGCACAG+TGG + chr1_3:57109107-57109126 Msa0127640:CDS 45.0%
GTGCAGTGAGGAGAAACTAA+TGG - chr1_3:57109175-57109194 None:intergenic 45.0%
! TGCTGACTAAGCCACTCATA+AGG + chr1_3:57109513-57109532 Msa0127640:CDS 45.0%
! GGTAGTAGAAGCCTTATGAG+TGG - chr1_3:57109527-57109546 None:intergenic 45.0%
TGTTCGGTCGGTGAATTTCA+TGG - chr1_3:57109658-57109677 None:intergenic 45.0%
AGTAAAGCACGAAGGCTGTT+CGG - chr1_3:57109674-57109693 None:intergenic 45.0%
!!! TTCATGCGTCCTGTTTTTGG+TGG + chr1_3:57109746-57109765 Msa0127640:CDS 45.0%
AAACCTCTGCCACCAAAAAC+AGG - chr1_3:57109758-57109777 None:intergenic 45.0%
!!! GGTTTTGTTCCTGTAGAACC+TGG + chr1_3:57109773-57109792 Msa0127640:CDS 45.0%
!!! TCTAAAATATAATATATTTA+AGG + chr1_3:57104318-57104337 Msa0127640:intron 5.0%
!! CTAAAATATAATATATTTAA+GGG + chr1_3:57104319-57104338 Msa0127640:intron 5.0%
!!! ATTTATATTTATACATTTTA+AGG + chr1_3:57104439-57104458 Msa0127640:intron 5.0%
!! AAAAAAAAAATTAAGAAAAA+AGG - chr1_3:57104497-57104516 None:intergenic 5.0%
!!! TCTAAAATATAATATATTTA+AGG + chr1_3:57104318-57104337 Msa0127640:intron 5.0%
!! CTAAAATATAATATATTTAA+GGG + chr1_3:57104319-57104338 Msa0127640:intron 5.0%
!!! ATTTATATTTATACATTTTA+AGG + chr1_3:57104439-57104458 Msa0127640:intron 5.0%
!! AAAAAAAAAATTAAGAAAAA+AGG - chr1_3:57104497-57104516 None:intergenic 5.0%
TGTCCTTGGTCATCTTCTCG+AGG + chr1_3:57104955-57104974 Msa0127640:CDS 50.0%
TCTCCTCGAGAAGATGACCA+AGG - chr1_3:57104961-57104980 None:intergenic 50.0%
GGTGGAAACAAGCTTGTGCA+TGG + chr1_3:57105172-57105191 Msa0127640:intron 50.0%
AAAGAGGTAAGACGTACCCG+TGG - chr1_3:57106332-57106351 None:intergenic 50.0%
GACGATGCAGGTGCTAAATC+AGG + chr1_3:57106836-57106855 Msa0127640:intron 50.0%
AGGCATTTACCACAACGCCA+AGG - chr1_3:57107031-57107050 None:intergenic 50.0%
AATCGTTCCCCCAAGCTTTG+TGG - chr1_3:57107620-57107639 None:intergenic 50.0%
CGACAAGAGTTCAGGAGAGT+GGG - chr1_3:57107672-57107691 None:intergenic 50.0%
CCACTCTCCTGAACTCTTGT+CGG + chr1_3:57107670-57107689 Msa0127640:intron 50.0%
CACTCTCCTGAACTCTTGTC+GGG + chr1_3:57107671-57107690 Msa0127640:intron 50.0%
TTCACACCCGACAAGAGTTC+AGG - chr1_3:57107680-57107699 None:intergenic 50.0%
AAGAGCAACCTCACGATCTG+TGG - chr1_3:57107891-57107910 None:intergenic 50.0%
GGCATACCTCTCCTATATGC+TGG + chr1_3:57107922-57107941 Msa0127640:CDS 50.0%
! TCCTATATGCTGGCTGAGGT+AGG + chr1_3:57107932-57107951 Msa0127640:intron 50.0%
ACCTACCTCAGCCAGCATAT+AGG - chr1_3:57107936-57107955 None:intergenic 50.0%
ACTGCGGAAGAAACCAAGTG+TGG - chr1_3:57108546-57108565 None:intergenic 50.0%
!! TGGCCATACTTGCTGTCTGA+AGG - chr1_3:57108693-57108712 None:intergenic 50.0%
TGATGCAGTTCACCATGTCG+GGG + chr1_3:57109037-57109056 Msa0127640:intron 50.0%
TAGTTGAGTATGCCCCGACA+TGG - chr1_3:57109052-57109071 None:intergenic 50.0%
! AAGGACAACAGTGATGGTGC+TGG - chr1_3:57109097-57109116 None:intergenic 50.0%
GGCTTACCACTGTGCTGAAA+AGG - chr1_3:57109116-57109135 None:intergenic 50.0%
CTCGGGAATCTCCTAGAAGT+GGG - chr1_3:57109613-57109632 None:intergenic 50.0%
TCTCGGGAATCTCCTAGAAG+TGG - chr1_3:57109614-57109633 None:intergenic 50.0%
TGTCCTTGGTCATCTTCTCG+AGG + chr1_3:57104955-57104974 Msa0127640:CDS 50.0%
TCTCCTCGAGAAGATGACCA+AGG - chr1_3:57104961-57104980 None:intergenic 50.0%
GGTGGAAACAAGCTTGTGCA+TGG + chr1_3:57105172-57105191 Msa0127640:intron 50.0%
AAAGAGGTAAGACGTACCCG+TGG - chr1_3:57106332-57106351 None:intergenic 50.0%
GACGATGCAGGTGCTAAATC+AGG + chr1_3:57106836-57106855 Msa0127640:intron 50.0%
AGGCATTTACCACAACGCCA+AGG - chr1_3:57107031-57107050 None:intergenic 50.0%
AATCGTTCCCCCAAGCTTTG+TGG - chr1_3:57107620-57107639 None:intergenic 50.0%
CGACAAGAGTTCAGGAGAGT+GGG - chr1_3:57107672-57107691 None:intergenic 50.0%
CCACTCTCCTGAACTCTTGT+CGG + chr1_3:57107670-57107689 Msa0127640:intron 50.0%
CACTCTCCTGAACTCTTGTC+GGG + chr1_3:57107671-57107690 Msa0127640:intron 50.0%
TTCACACCCGACAAGAGTTC+AGG - chr1_3:57107680-57107699 None:intergenic 50.0%
AAGAGCAACCTCACGATCTG+TGG - chr1_3:57107891-57107910 None:intergenic 50.0%
GGCATACCTCTCCTATATGC+TGG + chr1_3:57107922-57107941 Msa0127640:CDS 50.0%
! TCCTATATGCTGGCTGAGGT+AGG + chr1_3:57107932-57107951 Msa0127640:intron 50.0%
ACCTACCTCAGCCAGCATAT+AGG - chr1_3:57107936-57107955 None:intergenic 50.0%
ACTGCGGAAGAAACCAAGTG+TGG - chr1_3:57108546-57108565 None:intergenic 50.0%
!! TGGCCATACTTGCTGTCTGA+AGG - chr1_3:57108693-57108712 None:intergenic 50.0%
TGATGCAGTTCACCATGTCG+GGG + chr1_3:57109037-57109056 Msa0127640:intron 50.0%
TAGTTGAGTATGCCCCGACA+TGG - chr1_3:57109052-57109071 None:intergenic 50.0%
! AAGGACAACAGTGATGGTGC+TGG - chr1_3:57109097-57109116 None:intergenic 50.0%
GGCTTACCACTGTGCTGAAA+AGG - chr1_3:57109116-57109135 None:intergenic 50.0%
CTCGGGAATCTCCTAGAAGT+GGG - chr1_3:57109613-57109632 None:intergenic 50.0%
TCTCGGGAATCTCCTAGAAG+TGG - chr1_3:57109614-57109633 None:intergenic 50.0%
TCATCATCACGCGTTGCTCG+AGG + chr1_3:57104003-57104022 Msa0127640:five_prime_UTR 55.0%
GAGGATGGATATTGGGCCAC+TGG + chr1_3:57106598-57106617 Msa0127640:CDS 55.0%
AAGCACACTCCTTGGCGTTG+TGG + chr1_3:57107019-57107038 Msa0127640:CDS 55.0%
CCGACAAGAGTTCAGGAGAG+TGG - chr1_3:57107673-57107692 None:intergenic 55.0%
! CTGTGGAGTGCCTGGAATGA+AGG - chr1_3:57107874-57107893 None:intergenic 55.0%
CCTCAGCCAGCATATAGGAG+AGG - chr1_3:57107931-57107950 None:intergenic 55.0%
! CCTCTCCTATATGCTGGCTG+AGG + chr1_3:57107928-57107947 Msa0127640:CDS 55.0%
CTTGGTTTCTTCCGCAGTCC+TGG + chr1_3:57108548-57108567 Msa0127640:intron 55.0%
!! TGGTGGGCTGGTCTTATGAG+AGG + chr1_3:57108810-57108829 Msa0127640:CDS 55.0%
AAGCACGAAGGCTGTTCGGT+CGG - chr1_3:57109670-57109689 None:intergenic 55.0%
!!! CGTCCTGTTTTTGGTGGCAG+AGG + chr1_3:57109752-57109771 Msa0127640:CDS 55.0%
CTTGGTGAGCCAGGTTCTAC+AGG - chr1_3:57109785-57109804 None:intergenic 55.0%
! TTGCGTTCACTTGGTGAGCC+AGG - chr1_3:57109794-57109813 None:intergenic 55.0%
GGCTCACCAAGTGAACGCAA+TGG + chr1_3:57109794-57109813 Msa0127640:CDS 55.0%
TCATCATCACGCGTTGCTCG+AGG + chr1_3:57104003-57104022 Msa0127640:five_prime_UTR 55.0%
GAGGATGGATATTGGGCCAC+TGG + chr1_3:57106598-57106617 Msa0127640:CDS 55.0%
AAGCACACTCCTTGGCGTTG+TGG + chr1_3:57107019-57107038 Msa0127640:CDS 55.0%
CCGACAAGAGTTCAGGAGAG+TGG - chr1_3:57107673-57107692 None:intergenic 55.0%
! CTGTGGAGTGCCTGGAATGA+AGG - chr1_3:57107874-57107893 None:intergenic 55.0%
CCTCAGCCAGCATATAGGAG+AGG - chr1_3:57107931-57107950 None:intergenic 55.0%
! CCTCTCCTATATGCTGGCTG+AGG + chr1_3:57107928-57107947 Msa0127640:CDS 55.0%
CTTGGTTTCTTCCGCAGTCC+TGG + chr1_3:57108548-57108567 Msa0127640:intron 55.0%
!! TGGTGGGCTGGTCTTATGAG+AGG + chr1_3:57108810-57108829 Msa0127640:CDS 55.0%
AAGCACGAAGGCTGTTCGGT+CGG - chr1_3:57109670-57109689 None:intergenic 55.0%
!!! CGTCCTGTTTTTGGTGGCAG+AGG + chr1_3:57109752-57109771 Msa0127640:CDS 55.0%
CTTGGTGAGCCAGGTTCTAC+AGG - chr1_3:57109785-57109804 None:intergenic 55.0%
! TTGCGTTCACTTGGTGAGCC+AGG - chr1_3:57109794-57109813 None:intergenic 55.0%
GGCTCACCAAGTGAACGCAA+TGG + chr1_3:57109794-57109813 Msa0127640:CDS 55.0%
GTGGAGGGTGGACGACATCA+TGG + chr1_3:57104826-57104845 Msa0127640:exon 60.0%
ACTGAGCAGACCTGTCTGCG+AGG - chr1_3:57107151-57107170 None:intergenic 60.0%
! CTCACGATCTGTGGAGTGCC+TGG - chr1_3:57107882-57107901 None:intergenic 60.0%
CAGGCACTCCACAGATCGTG+AGG + chr1_3:57107880-57107899 Msa0127640:intron 60.0%
GTGGAGGGTGGACGACATCA+TGG + chr1_3:57104826-57104845 Msa0127640:exon 60.0%
ACTGAGCAGACCTGTCTGCG+AGG - chr1_3:57107151-57107170 None:intergenic 60.0%
! CTCACGATCTGTGGAGTGCC+TGG - chr1_3:57107882-57107901 None:intergenic 60.0%
CAGGCACTCCACAGATCGTG+AGG + chr1_3:57107880-57107899 Msa0127640:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57103863 57110158 57103863 ID=Msa0127640;Name=Msa0127640
chr1_3 mRNA 57103863 57110158 57103863 ID=Msa0127640-mRNA-1;Parent=Msa0127640;Name=Msa0127640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=592|1|1|1|0.92|0.86|15|326|541
chr1_3 exon 57103863 57104289 57103863 ID=Msa0127640-mRNA-1:exon:18149;Parent=Msa0127640-mRNA-1
chr1_3 exon 57104680 57105018 57104680 ID=Msa0127640-mRNA-1:exon:18150;Parent=Msa0127640-mRNA-1
chr1_3 exon 57105364 57105482 57105364 ID=Msa0127640-mRNA-1:exon:18151;Parent=Msa0127640-mRNA-1
chr1_3 exon 57106237 57106334 57106237 ID=Msa0127640-mRNA-1:exon:18152;Parent=Msa0127640-mRNA-1
chr1_3 exon 57106579 57106638 57106579 ID=Msa0127640-mRNA-1:exon:18153;Parent=Msa0127640-mRNA-1
chr1_3 exon 57106716 57106762 57106716 ID=Msa0127640-mRNA-1:exon:18154;Parent=Msa0127640-mRNA-1
chr1_3 exon 57106846 57107040 57106846 ID=Msa0127640-mRNA-1:exon:18155;Parent=Msa0127640-mRNA-1
chr1_3 exon 57107156 57107202 57107156 ID=Msa0127640-mRNA-1:exon:18156;Parent=Msa0127640-mRNA-1
chr1_3 exon 57107883 57107949 57107883 ID=Msa0127640-mRNA-1:exon:18157;Parent=Msa0127640-mRNA-1
chr1_3 exon 57108038 57108138 57108038 ID=Msa0127640-mRNA-1:exon:18158;Parent=Msa0127640-mRNA-1
chr1_3 exon 57108250 57108351 57108250 ID=Msa0127640-mRNA-1:exon:18159;Parent=Msa0127640-mRNA-1
chr1_3 exon 57108565 57108703 57108565 ID=Msa0127640-mRNA-1:exon:18160;Parent=Msa0127640-mRNA-1
chr1_3 exon 57108801 57108863 57108801 ID=Msa0127640-mRNA-1:exon:18161;Parent=Msa0127640-mRNA-1
chr1_3 exon 57109045 57109128 57109045 ID=Msa0127640-mRNA-1:exon:18162;Parent=Msa0127640-mRNA-1
chr1_3 exon 57109503 57110158 57109503 ID=Msa0127640-mRNA-1:exon:18163;Parent=Msa0127640-mRNA-1
chr1_3 five_prime_UTR 57103863 57104289 57103863 ID=Msa0127640-mRNA-1:five_prime_utr;Parent=Msa0127640-mRNA-1
chr1_3 five_prime_UTR 57104680 57104844 57104680 ID=Msa0127640-mRNA-1:five_prime_utr;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57104845 57105018 57104845 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57105364 57105482 57105364 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57106237 57106334 57106237 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57106579 57106638 57106579 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57106716 57106762 57106716 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57106846 57107040 57106846 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57107156 57107202 57107156 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57107883 57107949 57107883 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57108038 57108138 57108038 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57108250 57108351 57108250 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57108565 57108703 57108565 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57108801 57108863 57108801 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57109045 57109128 57109045 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 CDS 57109503 57109832 57109503 ID=Msa0127640-mRNA-1:cds;Parent=Msa0127640-mRNA-1
chr1_3 three_prime_UTR 57109833 57110158 57109833 ID=Msa0127640-mRNA-1:three_prime_utr;Parent=Msa0127640-mRNA-1
Gene Sequence

>Msa0127640

ATGGCTATTGAAATGACTTCTATTGTTTCAAAACTATCAATGTTATCCACTTCCGATCATGCTTCTGTTGTTTCTATGAACTTGTTTGTGGCACTTCTGTGTGCTTGTATTGTCCTTGGTCATCTTCTCGAGGAGAATCGATGGATGAATGAATCCATCACTGCCCTTTTGATTGGTATTTGCACTGGTGTAGTGATTTTGCTGTTTAGTGGTGGAAAAAGTTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCGCCTATTATATTCAATGCCGGGTTTCAAGTAAAGAAAAAGCAGTTTTTTGTCAACTTCATGACTATCACATCATTTGGAGCTATTGGCACATTAATATCTTGTGTCATTATAACCACGGGTGCTACTTTTGCTTTTAAGAGGATGGATATTGGGCCACTGGAAATCGGCGATTATCTAGCTATTGGAGCAATATTTGCCGCAACAGACTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTATTGTATAGTCTTGTATTTGGGGAAGGTGTTGTGAATGATGCTACCTCAGTGGTTCTTTTCAATGCAATTCAAAGCTTTGATCTTAACCAACTGAACCCTTCAATTGCATTGCATTTCTTGGGCAACTTCCTGTATTTGTTTGTAGCAAGCACACTCCTTGGCGTTGTGACAGGTCTGCTCAGTGCTTATGTTATTAAAAAGCTGTACATTGGCAGGCACTCCACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGTTAACCTATCTGAGTGGCATTCTTACCGTATTCTTTTGTGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACGCAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCTACCTTGTCCTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGTCCTGGAACATCTATAGCTGCAAGTTCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTTCCCTTATCCTTCTTATCCAACTTGACTAAAAAATCACAACATCAGAAGATTTCCTTCAGACAGCAAGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCGTATAATCAGTTCACCATGTCGGGGCATACTCAACTACGTAGCAATGCAATCATGATAACCAGCACCATCACTGTTGTCCTTTTCAGCACAGTGGTGTTTGGTTTGCTGACTAAGCCACTCATAAGGCTTCTACTACCTCATCCTAAAATCACAAGCAGCATGACAACCACAGAATCGACTACTCCAAAATCATTCATTGTCCCACTTCTAGGAGATTCCCGAGATTCTGAAGCTGATCTTGAAGGCCATGAAATTCACCGACCGAACAGCCTTCGTGCTTTACTATCAACTCCAACTCACACTGTTCATCGATTATGGCGAAAGTTTGATGATTCATTCATGCGTCCTGTTTTTGGTGGCAGAGGTTTTGTTCCTGTAGAACCTGGCTCACCAAGTGAACGCAATGGTAATCAATGGGGTTGA
Protein sequence

>Msa0127640

MAIEMTSIVSKLSMLSTSDHASVVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGICTGVVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITSFGAIGTLISCVIITTGATFAFKRMDIGPLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQLNPSIALHFLGNFLYLFVASTLLGVVTGLLSAYVIKKLYIGRHSTDREVALMMLMAYLSYMLAELTYLSGILTVFFCGIVMSHYTWHNVTQSSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLILLGRAAFVFPLSFLSNLTKKSQHQKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHPKITSSMTTTESTTPKSFIVPLLGDSRDSEADLEGHEIHRPNSLRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPSERNGNQWG*