Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079390 | XP_003590981.1 | 98.036 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079390 | sp|Q501D1|Y1490_ARATH | 53.899 | 577 | 244 | 9 | 1 | 560 | 1 | 572 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079390 | G7I6T7 | 98.036 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0079390 | 0.816841 | 4.491741e-52 | -8.615850e-47 |
| Msa0032080 | Msa0079390 | 0.867296 | 1.519353e-65 | -8.615850e-47 |
| Msa0032100 | Msa0079390 | 0.926081 | 7.645662e-91 | -8.615850e-47 |
| Msa0034400 | Msa0079390 | 0.825336 | 4.955462e-54 | -8.615850e-47 |
| Msa0055240 | Msa0079390 | 0.810612 | 1.057259e-50 | -8.615850e-47 |
| Msa0079370 | Msa0079390 | 0.921785 | 2.289110e-88 | -8.615850e-47 |
| Msa0079390 | Msa0083090 | 0.808453 | 3.074374e-50 | -8.615850e-47 |
| Msa0079390 | Msa0102140 | 0.833477 | 5.214485e-56 | -8.615850e-47 |
| Msa0079390 | Msa0124320 | 0.824111 | 9.636451e-54 | -8.615850e-47 |
| Msa0079390 | Msa0127640 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa0079390 | Msa0138020 | 0.809478 | 1.854970e-50 | -8.615850e-47 |
| Msa0079390 | Msa0172080 | 0.851990 | 6.191005e-61 | -8.615850e-47 |
| Msa0079390 | Msa0175420 | 0.824327 | 8.570826e-54 | -8.615850e-47 |
| Msa0079390 | Msa0189030 | 0.818565 | 1.834265e-52 | -8.615850e-47 |
| Msa0079390 | Msa0189110 | 0.846460 | 2.142691e-59 | -8.615850e-47 |
| Msa0079390 | Msa0218370 | 0.850263 | 1.901099e-60 | -8.615850e-47 |
| Msa0079390 | Msa0223910 | 0.814301 | 1.652192e-51 | -8.615850e-47 |
| Msa0079390 | Msa0231240 | 0.858411 | 8.394527e-63 | -8.615850e-47 |
| Msa0079390 | Msa0232340 | 0.809119 | 2.214684e-50 | -8.615850e-47 |
| Msa0079390 | Msa0236420 | 0.843276 | 1.548151e-58 | -8.615850e-47 |
| Msa0079390 | Msa0245860 | 0.820490 | 6.674549e-53 | -8.615850e-47 |
| Msa0079390 | Msa0265150 | 0.829331 | 5.465018e-55 | -8.615850e-47 |
| Msa0079390 | Msa0270960 | 0.841579 | 4.361640e-58 | -8.615850e-47 |
| Msa0079390 | Msa0281930 | 0.824513 | 7.748646e-54 | -8.615850e-47 |
| Msa0079390 | Msa0287790 | 0.807923 | 3.987690e-50 | -8.615850e-47 |
| Msa0079390 | Msa0287870 | 0.827492 | 1.518322e-54 | -8.615850e-47 |
| Msa0079390 | Msa0288120 | 0.800442 | 1.438297e-48 | -8.615850e-47 |
| Msa0079390 | Msa0309270 | 0.820236 | 7.630625e-53 | -8.615850e-47 |
| Msa0079390 | Msa0323370 | 0.857111 | 2.039100e-62 | -8.615850e-47 |
| Msa0079390 | Msa0363790 | 0.827454 | 1.550341e-54 | -8.615850e-47 |
| Msa0079390 | Msa0398200 | 0.804929 | 1.706062e-49 | -8.615850e-47 |
| Msa0079390 | Msa0455760 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0079390 | Msa0486690 | 0.849710 | 2.714725e-60 | -8.615850e-47 |
| Msa0079390 | Msa0526070 | -0.803409 | 3.534812e-49 | -8.615850e-47 |
| Msa0079390 | Msa0538670 | 0.801915 | 7.186990e-49 | -8.615850e-47 |
| Msa0079390 | Msa0574850 | 0.818830 | 1.597469e-52 | -8.615850e-47 |
| Msa0079390 | Msa0622170 | -0.804063 | 2.586244e-49 | -8.615850e-47 |
| Msa0079390 | Msa0623070 | 0.829210 | 5.847010e-55 | -8.615850e-47 |
| Msa0079390 | Msa0649730 | 0.807175 | 5.747904e-50 | -8.615850e-47 |
| Msa0079390 | Msa0654310 | 0.805831 | 1.104081e-49 | -8.615850e-47 |
| Msa0079390 | Msa0672760 | 0.810138 | 1.337777e-50 | -8.615850e-47 |
| Msa0079390 | Msa0685090 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0079390 | Msa0722070 | 0.826919 | 2.082522e-54 | -8.615850e-47 |
| Msa0079390 | Msa0763400 | 0.821281 | 4.389866e-53 | -8.615850e-47 |
| Msa0079390 | Msa0763890 | 0.812316 | 4.508395e-51 | -8.615850e-47 |
| Msa0079390 | Msa0763920 | 0.821833 | 3.271228e-53 | -8.615850e-47 |
| Msa0079390 | Msa0796980 | 0.801585 | 8.399865e-49 | -8.615850e-47 |
| Msa0079390 | Msa0797770 | 0.803743 | 3.014004e-49 | -8.615850e-47 |
| Msa0079390 | Msa0835230 | 0.807486 | 4.938170e-50 | -8.615850e-47 |
| Msa0079390 | Msa0844110 | 0.817161 | 3.806802e-52 | -8.615850e-47 |
| Msa0079390 | Msa0899970 | 0.833485 | 5.191115e-56 | -8.615850e-47 |
| Msa0079390 | Msa0921420 | 0.801633 | 8.211061e-49 | -8.615850e-47 |
| Msa0079390 | Msa0958920 | 0.809216 | 2.111209e-50 | -8.615850e-47 |
| Msa0079390 | Msa0965080 | 0.822001 | 2.991735e-53 | -8.615850e-47 |
| Msa0079390 | Msa0965290 | 0.822849 | 1.901187e-53 | -8.615850e-47 |
| Msa0079390 | Msa0999680 | 0.821174 | 4.645945e-53 | -8.615850e-47 |
| Msa0079390 | Msa1039710 | -0.811933 | 5.464116e-51 | -8.615850e-47 |
| Msa0079390 | Msa1160560 | 0.821476 | 3.957307e-53 | -8.615850e-47 |
| Msa0079390 | Msa1223870 | 0.802261 | 6.099912e-49 | -8.615850e-47 |
| Msa0079390 | Msa1263060 | 0.802949 | 4.400407e-49 | -8.615850e-47 |
| Msa0079390 | Msa1264620 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0079390 | Msa1304890 | -0.802375 | 5.780740e-49 | -8.615850e-47 |
| Msa0079390 | Msa1305350 | 0.803754 | 2.997716e-49 | -8.615850e-47 |
| Msa0079390 | Msa1333730 | 0.808188 | 3.500652e-50 | -8.615850e-47 |
| Msa0079390 | Msa1338400 | 0.818293 | 2.114001e-52 | -8.615850e-47 |
| Msa0079390 | Msa1346080 | 0.801591 | 8.374928e-49 | -8.615850e-47 |
| Msa0079390 | Msa1355180 | 0.842650 | 2.272003e-58 | -8.615850e-47 |
| Msa0079390 | Msa1369920 | -0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0079390 | Msa1390020 | 0.803661 | 3.134262e-49 | -8.615850e-47 |
| Msa0079390 | Msa1390350 | 0.836155 | 1.104548e-56 | -8.615850e-47 |
| Msa0079390 | Msa1401460 | 0.829685 | 4.483030e-55 | -8.615850e-47 |
| Msa0079390 | Msa1419840 | 0.816691 | 4.853226e-52 | -8.615850e-47 |
| Msa0079390 | Msa1442920 | 0.805469 | 1.314848e-49 | -8.615850e-47 |
| Msa0079390 | Msa1458680 | 0.830080 | 3.590995e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079390 | MtrunA17_Chr1g0190341 | 98.036 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1143 |
| Msa0079390 | MtrunA17_Chr1g0190371 | 98.036 | 560 | 11 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1143 |
| Msa0079390 | MtrunA17_Chr5g0395701 | 56.491 | 570 | 231 | 7 | 4 | 558 | 38 | 605 | 0.0 | 665 |
| Msa0079390 | MtrunA17_Chr4g0039581 | 55.185 | 569 | 240 | 8 | 1 | 558 | 3 | 567 | 0.0 | 655 |
| Msa0079390 | MtrunA17_Chr2g0309191 | 47.257 | 565 | 266 | 12 | 6 | 558 | 8 | 552 | 6.46e-175 | 506 |
| Msa0079390 | MtrunA17_Chr2g0310081 | 45.471 | 552 | 264 | 10 | 20 | 558 | 51 | 578 | 1.89e-169 | 493 |
| Msa0079390 | MtrunA17_Chr2g0309181 | 46.422 | 545 | 267 | 9 | 23 | 558 | 57 | 585 | 1.64e-167 | 488 |
| Msa0079390 | MtrunA17_Chr4g0074491 | 44.646 | 551 | 274 | 10 | 23 | 558 | 12 | 546 | 1.13e-160 | 469 |
| Msa0079390 | MtrunA17_Chr2g0309171 | 45.438 | 537 | 264 | 9 | 35 | 558 | 631 | 1151 | 4.88e-153 | 468 |
| Msa0079390 | MtrunA17_Chr2g0309171 | 45.591 | 533 | 260 | 9 | 35 | 554 | 14 | 529 | 3.64e-145 | 447 |
| Msa0079390 | MtrunA17_Chr2g0309131 | 42.620 | 542 | 229 | 8 | 23 | 558 | 20 | 485 | 1.20e-140 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079390 | AT3G04350.1 | 64.510 | 572 | 186 | 7 | 1 | 560 | 1 | 567 | 0.0 | 763 |
| Msa0079390 | AT5G18490.1 | 63.121 | 564 | 188 | 8 | 4 | 560 | 3 | 553 | 0.0 | 736 |
| Msa0079390 | AT3G04350.2 | 65.234 | 535 | 172 | 6 | 35 | 560 | 16 | 545 | 0.0 | 724 |
| Msa0079390 | AT1G04090.1 | 53.899 | 577 | 244 | 9 | 1 | 560 | 1 | 572 | 0.0 | 650 |
| Msa0079390 | AT5G43950.1 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 632 |
| Msa0079390 | AT2G44260.1 | 45.588 | 544 | 268 | 9 | 23 | 558 | 29 | 552 | 5.77e-167 | 486 |
| Msa0079390 | AT2G44230.1 | 45.155 | 547 | 264 | 10 | 23 | 558 | 20 | 541 | 3.37e-166 | 483 |
| Msa0079390 | AT2G44260.2 | 45.489 | 532 | 262 | 9 | 35 | 558 | 71 | 582 | 1.31e-161 | 473 |
| Msa0079390 | AT3G01870.1 | 41.176 | 561 | 290 | 13 | 15 | 558 | 46 | 583 | 3.05e-139 | 416 |
| Msa0079390 | AT3G01880.1 | 42.000 | 550 | 283 | 13 | 23 | 558 | 62 | 589 | 3.88e-138 | 413 |
Find 189 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1_2:-57216635 | None:intergenic |
| ACTGCGTGAATGCGTAAATT+TGG | 0.163385 | 1_2:-57217346 | None:intergenic |
| ATACTGAAAACAAGAGAATT+TGG | 0.220063 | 1_2:-57217546 | None:intergenic |
| GTAGTTACTTGTAGCTTTCT+TGG | 0.221103 | 1_2:+57217671 | Msa0079390:three_prime_UTR |
| TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1_2:+57215686 | Msa0079390:CDS |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1_2:+57216754 | Msa0079390:CDS |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1_2:+57217128 | Msa0079390:CDS |
| CACTTAATTACTCATTAATA+TGG | 0.264581 | 1_2:+57215908 | Msa0079390:CDS |
| GGATCAGCGTCAAAGAATTC+TGG | 0.283321 | 1_2:-57215132 | None:intergenic |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1_2:-57217170 | None:intergenic |
| CGTATTGCTTGTAATGGAAT+AGG | 0.307831 | 1_2:+57217851 | Msa0079390:three_prime_UTR |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1_2:-57216886 | None:intergenic |
| TCCTTTACCATAAGAATGAT+TGG | 0.315404 | 1_2:-57217262 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1_2:-57216816 | None:intergenic |
| TCTGAAAACATACCATTATT+AGG | 0.322734 | 1_2:-57217305 | None:intergenic |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1_2:-57217089 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1_2:+57216460 | Msa0079390:CDS |
| ACAAGAGAATTTGGATTGTC+TGG | 0.332057 | 1_2:-57217537 | None:intergenic |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1_2:-57216030 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1_2:-57216021 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1_2:+57216773 | Msa0079390:CDS |
| TCTCTCTTCTTTCTAATAAG+AGG | 0.345722 | 1_2:+57215051 | Msa0079390:five_prime_UTR |
| ATTCGATTTGGAGTTTATTC+AGG | 0.347982 | 1_2:+57216785 | Msa0079390:CDS |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1_2:+57215944 | Msa0079390:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1_2:-57217161 | None:intergenic |
| GACGGACCAGATATCAAGTT+TGG | 0.351841 | 1_2:-57217452 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1_2:+57217081 | Msa0079390:CDS |
| CATGCTCTTATTGAGCATTA+CGG | 0.358178 | 1_2:+57216294 | Msa0079390:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1_2:-57216627 | None:intergenic |
| TTCATTCGTATTGCTTGTAA+TGG | 0.364694 | 1_2:+57217845 | Msa0079390:three_prime_UTR |
| TCATCTTTCTGTCCTAATAA+TGG | 0.365027 | 1_2:+57217293 | Msa0079390:three_prime_UTR |
| AAGAGGTGAAGGAAGAGAAA+AGG | 0.366594 | 1_2:-57215160 | None:intergenic |
| GCTGGATCCAATCATTCTTA+TGG | 0.369974 | 1_2:+57217255 | Msa0079390:three_prime_UTR |
| ATGCTCTTATTGAGCATTAC+GGG | 0.370883 | 1_2:+57216295 | Msa0079390:CDS |
| TAAGAGGTTGCTTTGTGGTT+TGG | 0.377108 | 1_2:+57215067 | Msa0079390:five_prime_UTR |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1_2:-57216634 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1_2:+57217146 | Msa0079390:CDS |
| AAAATTCCAAACTTGATATC+TGG | 0.383640 | 1_2:+57217446 | Msa0079390:three_prime_UTR |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1_2:-57216016 | None:intergenic |
| TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1_2:+57215915 | Msa0079390:CDS |
| AGAGGTGAAGGAAGAGAAAA+GGG | 0.390245 | 1_2:-57215159 | None:intergenic |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1_2:-57217118 | None:intergenic |
| CTGCGTGAATGCGTAAATTT+GGG | 0.393049 | 1_2:-57217345 | None:intergenic |
| GTGGTTTGGTAAGGGATGTT+TGG | 0.395720 | 1_2:+57215081 | Msa0079390:exon |
| TAAGATAATATTATTGCTAA+AGG | 0.408489 | 1_2:+57217801 | Msa0079390:three_prime_UTR |
| TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1_2:+57216857 | Msa0079390:CDS |
| CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1_2:-57215907 | None:intergenic |
| CCTTGTGGCCATTGCGGAAG+AGG | 0.425442 | 1_2:-57215177 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1_2:-57216615 | None:intergenic |
| TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1_2:-57215806 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1_2:+57216555 | Msa0079390:CDS |
| GCTCAATAAGAGCATGAATC+TGG | 0.427486 | 1_2:-57216287 | None:intergenic |
| ATTGTTGCTGCCGGGTATCT+TGG | 0.427869 | 1_2:+57216960 | Msa0079390:CDS |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1_2:-57215979 | None:intergenic |
| GTATCAACTGTATGTATAGA+AGG | 0.431668 | 1_2:+57217624 | Msa0079390:three_prime_UTR |
| GGTTGCTTTGTGGTTTGGTA+AGG | 0.431847 | 1_2:+57215072 | Msa0079390:five_prime_UTR |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1_2:+57216873 | Msa0079390:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1_2:+57216674 | Msa0079390:CDS |
| TCCAATCATTCTTATGGTAA+AGG | 0.432784 | 1_2:+57217261 | Msa0079390:three_prime_UTR |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1_2:+57216673 | Msa0079390:CDS |
| GATACATGGCGACGATATCT+TGG | 0.440980 | 1_2:-57217606 | None:intergenic |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1_2:+57216718 | Msa0079390:CDS |
| TCTAATAAGAGGTTGCTTTG+TGG | 0.443374 | 1_2:+57215062 | Msa0079390:five_prime_UTR |
| ATATTATTGCTAAAGGTTGA+TGG | 0.447274 | 1_2:+57217808 | Msa0079390:three_prime_UTR |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1_2:-57215970 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1_2:+57216879 | Msa0079390:CDS |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1_2:-57216336 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1_2:-57215644 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1_2:-57217134 | None:intergenic |
| TGTATGTATAGAAGGTGTAT+AGG | 0.462422 | 1_2:+57217632 | Msa0079390:three_prime_UTR |
| AGAACATGTATATACATTTG+TGG | 0.465667 | 1_2:+57217770 | Msa0079390:three_prime_UTR |
| TATTATTGCTAAAGGTTGAT+GGG | 0.466225 | 1_2:+57217809 | Msa0079390:three_prime_UTR |
| GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1_2:-57216276 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1_2:+57216138 | Msa0079390:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1_2:-57215769 | None:intergenic |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1_2:+57215824 | Msa0079390:CDS |
| TGGATCCAGCTCATGAGAAA+TGG | 0.475127 | 1_2:-57217242 | None:intergenic |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1_2:+57216755 | Msa0079390:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1_2:+57216584 | Msa0079390:CDS |
| GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1_2:-57215153 | None:intergenic |
| TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1_2:+57216506 | Msa0079390:CDS |
| GCAGGCACGTCAGTGGTCAT+TGG | 0.482146 | 1_2:+57217371 | Msa0079390:three_prime_UTR |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1_2:-57215976 | None:intergenic |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1_2:-57216013 | None:intergenic |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1_2:+57217168 | Msa0079390:CDS |
| GATCAGCGTCAAAGAATTCT+GGG | 0.494149 | 1_2:-57215131 | None:intergenic |
| TGTAGATCCGATGTTTAAGT+TGG | 0.494899 | 1_2:+57217714 | Msa0079390:three_prime_UTR |
| TTCCTTCACCTCTTCCGCAA+TGG | 0.497042 | 1_2:+57215169 | Msa0079390:CDS |
| ACTAGCCATTTCTCATGAGC+TGG | 0.497310 | 1_2:+57217237 | Msa0079390:three_prime_UTR |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1_2:-57216614 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1_2:+57215643 | Msa0079390:CDS |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1_2:+57216206 | Msa0079390:CDS |
| GAGAAATGGCTAGTAGCATA+TGG | 0.508226 | 1_2:-57217228 | None:intergenic |
| CTCGCAAACTTCTGTTAGAT+CGG | 0.508339 | 1_2:-57216061 | None:intergenic |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1_2:-57216707 | None:intergenic |
| CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1_2:+57216843 | Msa0079390:CDS |
| TACGCATTCACGCAGTCGGC+AGG | 0.512700 | 1_2:+57217353 | Msa0079390:three_prime_UTR |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1_2:-57216583 | None:intergenic |
| CTAGCTAGAGGTGTATCTGT+TGG | 0.516741 | 1_2:+57216165 | Msa0079390:CDS |
| GGTGGCCGTTGGATCTAGAT+TGG | 0.518329 | 1_2:-57217474 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1_2:+57215963 | Msa0079390:CDS |
| GTTGCTTTGTGGTTTGGTAA+GGG | 0.528648 | 1_2:+57215073 | Msa0079390:five_prime_UTR |
| GATACAAGATTGTTGCTGCC+GGG | 0.529740 | 1_2:+57216952 | Msa0079390:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1_2:+57216858 | Msa0079390:CDS |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1_2:+57217136 | Msa0079390:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1_2:+57216395 | Msa0079390:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1_2:+57217137 | Msa0079390:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1_2:-57216567 | None:intergenic |
| CTATACATACAGTTGATACA+TGG | 0.547754 | 1_2:-57217620 | None:intergenic |
| AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1_2:-57215878 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1_2:+57215825 | Msa0079390:CDS |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1_2:+57215644 | Msa0079390:CDS |
| AATTCTAACGGAAAGGCACT+AGG | 0.549895 | 1_2:+57215718 | Msa0079390:CDS |
| GGCCATTGCGGAAGAGGTGA+AGG | 0.550905 | 1_2:-57215171 | None:intergenic |
| ATCAGCACATCGGTGGCCGT+TGG | 0.551235 | 1_2:-57217485 | None:intergenic |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1_2:+57215754 | Msa0079390:CDS |
| AGATACAAGATTGTTGCTGC+CGG | 0.552734 | 1_2:+57216951 | Msa0079390:CDS |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1_2:-57215975 | None:intergenic |
| GACTCCATCACCAAGATACC+CGG | 0.558460 | 1_2:-57216970 | None:intergenic |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1_2:-57216706 | None:intergenic |
| ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1_2:-57216496 | None:intergenic |
| GCCGTTGGATCTAGATTGGA+CGG | 0.562927 | 1_2:-57217470 | None:intergenic |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1_2:-57217035 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1_2:+57217133 | Msa0079390:CDS |
| GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1_2:+57216507 | Msa0079390:CDS |
| GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1_2:-57215862 | None:intergenic |
| TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1_2:-57216492 | None:intergenic |
| AATTTACGCATTCACGCAGT+CGG | 0.570803 | 1_2:+57217349 | Msa0079390:three_prime_UTR |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1_2:+57216396 | Msa0079390:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1_2:+57216558 | Msa0079390:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1_2:+57216654 | Msa0079390:CDS |
| TGGAGATGCACAAATTCTAA+CGG | 0.580046 | 1_2:+57215706 | Msa0079390:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1_2:+57215964 | Msa0079390:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1_2:+57216708 | Msa0079390:CDS |
| TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1_2:+57215805 | Msa0079390:CDS |
| CCTCTTCCGCAATGGCCACA+AGG | 0.586239 | 1_2:+57215177 | Msa0079390:CDS |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1_2:+57217160 | Msa0079390:CDS |
| GAATAGGAATGTGCTTGGTT+CGG | 0.588806 | 1_2:+57217867 | Msa0079390:three_prime_UTR |
| GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1_2:-57215782 | None:intergenic |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1_2:-57216128 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1_2:-57215757 | None:intergenic |
| GGTGTATAGGAGGTGTGCCT+CGG | 0.595411 | 1_2:+57217645 | Msa0079390:three_prime_UTR |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1_2:+57216349 | Msa0079390:CDS |
| TCCGTCCAATCTAGATCCAA+CGG | 0.595498 | 1_2:+57217469 | Msa0079390:three_prime_UTR |
| TATTGAGCATTACGGGCCAA+CGG | 0.595833 | 1_2:+57216302 | Msa0079390:CDS |
| CTGATGATAGTGTGAATGTG+TGG | 0.596339 | 1_2:+57217503 | Msa0079390:three_prime_UTR |
| TCTGTTGGAACATTCTTCTG+TGG | 0.597430 | 1_2:+57216180 | Msa0079390:CDS |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1_2:-57217002 | None:intergenic |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1_2:+57216438 | Msa0079390:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1_2:+57217009 | Msa0079390:CDS |
| GCTGCCGGGTATCTTGGTGA+TGG | 0.606924 | 1_2:+57216966 | Msa0079390:CDS |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1_2:+57216341 | Msa0079390:CDS |
| ATGTATAGAAGGTGTATAGG+AGG | 0.609592 | 1_2:+57217635 | Msa0079390:three_prime_UTR |
| TAATGGAATAGGAATGTGCT+TGG | 0.609971 | 1_2:+57217862 | Msa0079390:three_prime_UTR |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1_2:+57216432 | Msa0079390:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1_2:+57217173 | Msa0079390:CDS |
| AGAATACCTTGTGGCCATTG+CGG | 0.613053 | 1_2:-57215183 | None:intergenic |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1_2:+57216820 | Msa0079390:CDS |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1_2:+57215979 | Msa0079390:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1_2:+57217154 | Msa0079390:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1_2:+57216450 | Msa0079390:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1_2:-57216318 | None:intergenic |
| GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1_2:-57215995 | None:intergenic |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1_2:-57216872 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1_2:+57216417 | Msa0079390:CDS |
| ATGCACAAATTCTAACGGAA+AGG | 0.619830 | 1_2:+57215711 | Msa0079390:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1_2:+57216583 | Msa0079390:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1_2:+57216435 | Msa0079390:CDS |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1_2:-57216450 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1_2:+57217010 | Msa0079390:CDS |
| CACTATCATCAGCACATCGG+TGG | 0.627838 | 1_2:-57217492 | None:intergenic |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1_2:+57216524 | Msa0079390:CDS |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1_2:-57216855 | None:intergenic |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1_2:+57216819 | Msa0079390:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1_2:-57215817 | None:intergenic |
| TGATGATAGTGTGAATGTGT+GGG | 0.650642 | 1_2:+57217504 | Msa0079390:three_prime_UTR |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1_2:+57216666 | Msa0079390:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1_2:-57216205 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1_2:-57217039 | None:intergenic |
| GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1_2:-57216147 | None:intergenic |
| ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1_2:+57216844 | Msa0079390:CDS |
| CTACAAGTAACTACTATCCG+AGG | 0.655684 | 1_2:-57217662 | None:intergenic |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1_2:+57217138 | Msa0079390:CDS |
| GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1_2:-57215801 | None:intergenic |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1_2:+57216988 | Msa0079390:CDS |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1_2:+57217011 | Msa0079390:CDS |
| GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1_2:+57216153 | Msa0079390:CDS |
| GCAGTCGGCAGGCACGTCAG+TGG | 0.703576 | 1_2:+57217364 | Msa0079390:three_prime_UTR |
| TCACACTATCATCAGCACAT+CGG | 0.710871 | 1_2:-57217495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTATTTGATTTCTTTT+TGG | + | chr1_2:57215522-57215541 | Msa0079390:intron | 15.0% |
| !! | TAAGATAATATTATTGCTAA+AGG | + | chr1_2:57217801-57217820 | Msa0079390:three_prime_UTR | 15.0% |
| !!! | ACTGTTTTCTTTCTATTTTT+TGG | + | chr1_2:57215256-57215275 | Msa0079390:intron | 20.0% |
| !!! | GATCTTATTGTCATTAATTT+TGG | + | chr1_2:57215337-57215356 | Msa0079390:intron | 20.0% |
| !!! | TAGTATTTTTTGCAGATATT+GGG | + | chr1_2:57215366-57215385 | Msa0079390:intron | 20.0% |
| !! | ATTACTAAGCTTGAAAATTA+AGG | - | chr1_2:57215395-57215414 | None:intergenic | 20.0% |
| !!! | TTTGATTTCTTTTTGGTTAT+TGG | + | chr1_2:57215529-57215548 | Msa0079390:intron | 20.0% |
| !! | CATATTAATGAGTAATTAAG+TGG | - | chr1_2:57215910-57215929 | None:intergenic | 20.0% |
| !! | CACTTAATTACTCATTAATA+TGG | + | chr1_2:57215908-57215927 | Msa0079390:CDS | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1_2:57216917-57216936 | Msa0079390:CDS | 20.0% |
| !!! | TTTTTAACCAACTTAAACAT+CGG | - | chr1_2:57217724-57217743 | None:intergenic | 20.0% |
| ! | AAGAAAAAAAGAATACCTTG+TGG | - | chr1_2:57215195-57215214 | None:intergenic | 25.0% |
| !!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1_2:57215365-57215384 | Msa0079390:intron | 25.0% |
| !!! | CTTTATTTCATATTTTGCTG+TGG | + | chr1_2:57215447-57215466 | Msa0079390:intron | 25.0% |
| ! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1_2:57215686-57215705 | Msa0079390:CDS | 25.0% |
| ! | TTACTCATTAATATGGTGTA+TGG | + | chr1_2:57215915-57215934 | Msa0079390:CDS | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | + | chr1_2:57215944-57215963 | Msa0079390:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | - | chr1_2:57216819-57216838 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | + | chr1_2:57216819-57216838 | Msa0079390:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | + | chr1_2:57216820-57216839 | Msa0079390:CDS | 25.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | - | chr1_2:57217092-57217111 | None:intergenic | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1_2:57217091-57217110 | Msa0079390:CDS | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1_2:57217121-57217140 | None:intergenic | 25.0% |
| ! | TCTGAAAACATACCATTATT+AGG | - | chr1_2:57217308-57217327 | None:intergenic | 25.0% |
| !! | TATGTTTTCAGACTTTGATT+TGG | + | chr1_2:57217316-57217335 | Msa0079390:three_prime_UTR | 25.0% |
| !!! | AGCGAACAAATTTTGATTTT+TGG | + | chr1_2:57217416-57217435 | Msa0079390:three_prime_UTR | 25.0% |
| ! | AAAATTCCAAACTTGATATC+TGG | + | chr1_2:57217446-57217465 | Msa0079390:three_prime_UTR | 25.0% |
| ! | ATACTGAAAACAAGAGAATT+TGG | - | chr1_2:57217549-57217568 | None:intergenic | 25.0% |
| ! | AGAACATGTATATACATTTG+TGG | + | chr1_2:57217770-57217789 | Msa0079390:three_prime_UTR | 25.0% |
| ! | ATATTATTGCTAAAGGTTGA+TGG | + | chr1_2:57217808-57217827 | Msa0079390:three_prime_UTR | 25.0% |
| !! | TATTATTGCTAAAGGTTGAT+GGG | + | chr1_2:57217809-57217828 | Msa0079390:three_prime_UTR | 25.0% |
| TCTCTCTTCTTTCTAATAAG+AGG | + | chr1_2:57215051-57215070 | Msa0079390:five_prime_UTR | 30.0% | |
| !! | TGTAACTTGTATTTTCCCAA+GGG | - | chr1_2:57215662-57215681 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | - | chr1_2:57215663-57215682 | None:intergenic | 30.0% |
| ! | TTTCACGTTTTATAGACCTT+TGG | + | chr1_2:57215741-57215760 | Msa0079390:CDS | 30.0% |
| AGAAAAATTCTTTCCAGGTT+TGG | + | chr1_2:57216115-57216134 | Msa0079390:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | + | chr1_2:57216417-57216436 | Msa0079390:CDS | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1_2:57216499-57216518 | None:intergenic | 30.0% |
| TGCGAGAAATAATCTTAAGA+AGG | + | chr1_2:57216506-57216525 | Msa0079390:CDS | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | + | chr1_2:57216507-57216526 | Msa0079390:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | + | chr1_2:57216584-57216603 | Msa0079390:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | - | chr1_2:57216637-57216656 | None:intergenic | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | - | chr1_2:57216638-57216657 | None:intergenic | 30.0% | |
| AACATTGAGATGAACAAGAT+CGG | + | chr1_2:57216654-57216673 | Msa0079390:CDS | 30.0% | |
| !! | ATTCGATTTGGAGTTTATTC+AGG | + | chr1_2:57216785-57216804 | Msa0079390:CDS | 30.0% |
| AGAACGTGAATCATATACAA+TGG | - | chr1_2:57217042-57217061 | None:intergenic | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | + | chr1_2:57217081-57217100 | Msa0079390:CDS | 30.0% | |
| TCCAATCATTCTTATGGTAA+AGG | + | chr1_2:57217261-57217280 | Msa0079390:three_prime_UTR | 30.0% | |
| TCCTTTACCATAAGAATGAT+TGG | - | chr1_2:57217265-57217284 | None:intergenic | 30.0% | |
| TCATCTTTCTGTCCTAATAA+TGG | + | chr1_2:57217293-57217312 | Msa0079390:three_prime_UTR | 30.0% | |
| ! | CTATACATACAGTTGATACA+TGG | - | chr1_2:57217623-57217642 | None:intergenic | 30.0% |
| GTATCAACTGTATGTATAGA+AGG | + | chr1_2:57217624-57217643 | Msa0079390:three_prime_UTR | 30.0% | |
| ! | TGTATGTATAGAAGGTGTAT+AGG | + | chr1_2:57217632-57217651 | Msa0079390:three_prime_UTR | 30.0% |
| TTCATTCGTATTGCTTGTAA+TGG | + | chr1_2:57217845-57217864 | Msa0079390:three_prime_UTR | 30.0% | |
| ! | TCTAATAAGAGGTTGCTTTG+TGG | + | chr1_2:57215062-57215081 | Msa0079390:five_prime_UTR | 35.0% |
| AGTTTGTGAGTGATATACTC+AGG | + | chr1_2:57215610-57215629 | Msa0079390:intron | 35.0% | |
| TGGAGATGCACAAATTCTAA+CGG | + | chr1_2:57215706-57215725 | Msa0079390:CDS | 35.0% | |
| ATGCACAAATTCTAACGGAA+AGG | + | chr1_2:57215711-57215730 | Msa0079390:CDS | 35.0% | |
| !! | TAAGTGGCTTTTTAAGAGCT+GGG | - | chr1_2:57215894-57215913 | None:intergenic | 35.0% |
| !! | TTAAGTGGCTTTTTAAGAGC+TGG | - | chr1_2:57215895-57215914 | None:intergenic | 35.0% |
| CATCGAACTTCTTCAACTTT+CGG | - | chr1_2:57216033-57216052 | None:intergenic | 35.0% | |
| GTCGAAGAAAAATTCTTTCC+AGG | + | chr1_2:57216110-57216129 | Msa0079390:CDS | 35.0% | |
| CACTTGTTCAGAATCAAAGT+AGG | - | chr1_2:57216208-57216227 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | + | chr1_2:57216206-57216225 | Msa0079390:CDS | 35.0% | |
| CATGCTCTTATTGAGCATTA+CGG | + | chr1_2:57216294-57216313 | Msa0079390:CDS | 35.0% | |
| ATGCTCTTATTGAGCATTAC+GGG | + | chr1_2:57216295-57216314 | Msa0079390:CDS | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | - | chr1_2:57216321-57216340 | None:intergenic | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | + | chr1_2:57216341-57216360 | Msa0079390:CDS | 35.0% | |
| ! | TGGAGCAATTTTGTATACTG+CGG | + | chr1_2:57216383-57216402 | Msa0079390:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | + | chr1_2:57216460-57216479 | Msa0079390:CDS | 35.0% |
| GTTCATGTAAAACCAGCATT+AGG | + | chr1_2:57216555-57216574 | Msa0079390:CDS | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | - | chr1_2:57216586-57216605 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | + | chr1_2:57216583-57216602 | Msa0079390:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | + | chr1_2:57216773-57216792 | Msa0079390:CDS | 35.0% |
| CTCATATATTGCAACCAACA+TGG | - | chr1_2:57217005-57217024 | None:intergenic | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | + | chr1_2:57217010-57217029 | Msa0079390:CDS | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | + | chr1_2:57217011-57217030 | Msa0079390:CDS | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | - | chr1_2:57217038-57217057 | None:intergenic | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | + | chr1_2:57217128-57217147 | Msa0079390:CDS | 35.0% | |
| ! | TGATGATAGTGTGAATGTGT+GGG | + | chr1_2:57217504-57217523 | Msa0079390:three_prime_UTR | 35.0% |
| ACAAGAGAATTTGGATTGTC+TGG | - | chr1_2:57217540-57217559 | None:intergenic | 35.0% | |
| !! | TGTTTTCAGTGTGTCATTGA+TGG | + | chr1_2:57217574-57217593 | Msa0079390:three_prime_UTR | 35.0% |
| ! | ATGTATAGAAGGTGTATAGG+AGG | + | chr1_2:57217635-57217654 | Msa0079390:three_prime_UTR | 35.0% |
| GTAGTTACTTGTAGCTTTCT+TGG | + | chr1_2:57217671-57217690 | Msa0079390:three_prime_UTR | 35.0% | |
| TGTAGATCCGATGTTTAAGT+TGG | + | chr1_2:57217714-57217733 | Msa0079390:three_prime_UTR | 35.0% | |
| ! | CGTATTGCTTGTAATGGAAT+AGG | + | chr1_2:57217851-57217870 | Msa0079390:three_prime_UTR | 35.0% |
| TAATGGAATAGGAATGTGCT+TGG | + | chr1_2:57217862-57217881 | Msa0079390:three_prime_UTR | 35.0% | |
| ! | TAAGAGGTTGCTTTGTGGTT+TGG | + | chr1_2:57215067-57215086 | Msa0079390:five_prime_UTR | 40.0% |
| !! | GTTGCTTTGTGGTTTGGTAA+GGG | + | chr1_2:57215073-57215092 | Msa0079390:five_prime_UTR | 40.0% |
| !! | TTGGTTGCGAGTGTTTTTGT+TGG | + | chr1_2:57215100-57215119 | Msa0079390:CDS | 40.0% |
| !! | TGGTTGCGAGTGTTTTTGTT+GGG | + | chr1_2:57215101-57215120 | Msa0079390:CDS | 40.0% |
| GATCAGCGTCAAAGAATTCT+GGG | - | chr1_2:57215134-57215153 | None:intergenic | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1_2:57215162-57215181 | None:intergenic | 40.0% | |
| AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1_2:57215163-57215182 | None:intergenic | 40.0% | |
| TTGTGAGTGATATACTCAGG+TGG | + | chr1_2:57215613-57215632 | Msa0079390:intron | 40.0% | |
| !! | AATTCTAACGGAAAGGCACT+AGG | + | chr1_2:57215718-57215737 | Msa0079390:CDS | 40.0% |
| ! | AATCCATCTGGAATCTCCAA+AGG | - | chr1_2:57215760-57215779 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCTG+GGG | - | chr1_2:57215893-57215912 | None:intergenic | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1_2:57215973-57215992 | None:intergenic | 40.0% |
| AACTTTCGGTTCATCTGGAT+TGG | - | chr1_2:57216019-57216038 | None:intergenic | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | - | chr1_2:57216024-57216043 | None:intergenic | 40.0% | |
| CTCGCAAACTTCTGTTAGAT+CGG | - | chr1_2:57216064-57216083 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | - | chr1_2:57216131-57216150 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | + | chr1_2:57216138-57216157 | Msa0079390:CDS | 40.0% | |
| TCTGTTGGAACATTCTTCTG+TGG | + | chr1_2:57216180-57216199 | Msa0079390:CDS | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | - | chr1_2:57216279-57216298 | None:intergenic | 40.0% | |
| ! | GCTCAATAAGAGCATGAATC+TGG | - | chr1_2:57216290-57216309 | None:intergenic | 40.0% |
| GATGGCATGTATTTCTCATC+AGG | - | chr1_2:57216339-57216358 | None:intergenic | 40.0% | |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1_2:57216363-57216382 | Msa0079390:CDS | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | + | chr1_2:57216384-57216403 | Msa0079390:CDS | 40.0% |
| TATACTGCGGGTAATGCAAA+GGG | + | chr1_2:57216396-57216415 | Msa0079390:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | + | chr1_2:57216432-57216451 | Msa0079390:CDS | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | + | chr1_2:57216558-57216577 | Msa0079390:CDS | 40.0% | |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1_2:57216603-57216622 | Msa0079390:CDS | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | - | chr1_2:57216630-57216649 | None:intergenic | 40.0% |
| AACAAGATCGGTGAACATGT+CGG | + | chr1_2:57216666-57216685 | Msa0079390:CDS | 40.0% | |
| AAAAACAGACCAAAGCTCTC+CGG | - | chr1_2:57216730-57216749 | None:intergenic | 40.0% | |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1_2:57216744-57216763 | Msa0079390:CDS | 40.0% |
| GGATCATCCAAACTTGGAAT+AGG | + | chr1_2:57216879-57216898 | Msa0079390:CDS | 40.0% | |
| AGATACAAGATTGTTGCTGC+CGG | + | chr1_2:57216951-57216970 | Msa0079390:CDS | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | + | chr1_2:57216988-57217007 | Msa0079390:CDS | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | + | chr1_2:57217009-57217028 | Msa0079390:CDS | 40.0% | |
| GAGAAATGGCTAGTAGCATA+TGG | - | chr1_2:57217231-57217250 | None:intergenic | 40.0% | |
| GCTGGATCCAATCATTCTTA+TGG | + | chr1_2:57217255-57217274 | Msa0079390:three_prime_UTR | 40.0% | |
| CTGCGTGAATGCGTAAATTT+GGG | - | chr1_2:57217348-57217367 | None:intergenic | 40.0% | |
| ACTGCGTGAATGCGTAAATT+TGG | - | chr1_2:57217349-57217368 | None:intergenic | 40.0% | |
| AATTTACGCATTCACGCAGT+CGG | + | chr1_2:57217349-57217368 | Msa0079390:three_prime_UTR | 40.0% | |
| TCACACTATCATCAGCACAT+CGG | - | chr1_2:57217498-57217517 | None:intergenic | 40.0% | |
| ! | CTGATGATAGTGTGAATGTG+TGG | + | chr1_2:57217503-57217522 | Msa0079390:three_prime_UTR | 40.0% |
| CTACAAGTAACTACTATCCG+AGG | - | chr1_2:57217665-57217684 | None:intergenic | 40.0% | |
| GAATAGGAATGTGCTTGGTT+CGG | + | chr1_2:57217867-57217886 | Msa0079390:three_prime_UTR | 40.0% | |
| !! | GGTTGCTTTGTGGTTTGGTA+AGG | + | chr1_2:57215072-57215091 | Msa0079390:five_prime_UTR | 45.0% |
| !! | GTGGTTTGGTAAGGGATGTT+TGG | + | chr1_2:57215081-57215100 | Msa0079390:exon | 45.0% |
| GGATCAGCGTCAAAGAATTC+TGG | - | chr1_2:57215135-57215154 | None:intergenic | 45.0% | |
| GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1_2:57215156-57215175 | None:intergenic | 45.0% | |
| AGAATACCTTGTGGCCATTG+CGG | - | chr1_2:57215186-57215205 | None:intergenic | 45.0% | |
| TGAGTGATATACTCAGGTGG+CGG | + | chr1_2:57215616-57215635 | Msa0079390:intron | 45.0% | |
| ! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1_2:57215754-57215773 | Msa0079390:CDS | 45.0% |
| CCAAGACAGGAAAATCCATC+TGG | - | chr1_2:57215772-57215791 | None:intergenic | 45.0% | |
| !! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1_2:57215769-57215788 | Msa0079390:CDS | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1_2:57215978-57215997 | None:intergenic | 45.0% |
| ! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1_2:57215979-57215998 | None:intergenic | 45.0% |
| CCAAAGGGTTATAAAGCCGT+CGG | + | chr1_2:57215979-57215998 | Msa0079390:CDS | 45.0% | |
| ! | TTTCGGTTCATCTGGATTGG+TGG | - | chr1_2:57216016-57216035 | None:intergenic | 45.0% |
| ! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1_2:57216153-57216172 | Msa0079390:CDS | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+TGG | + | chr1_2:57216165-57216184 | Msa0079390:CDS | 45.0% |
| TATTGAGCATTACGGGCCAA+CGG | + | chr1_2:57216302-57216321 | Msa0079390:CDS | 45.0% | |
| AAAAACCACGACACCGATGA+TGG | - | chr1_2:57216357-57216376 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | + | chr1_2:57216395-57216414 | Msa0079390:CDS | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | - | chr1_2:57216453-57216472 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | + | chr1_2:57216450-57216469 | Msa0079390:CDS | 45.0% | |
| TTTCTCGCATCTTCATCGGT+AGG | - | chr1_2:57216495-57216514 | None:intergenic | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | + | chr1_2:57216524-57216543 | Msa0079390:CDS | 45.0% | |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1_2:57216747-57216766 | Msa0079390:CDS | 45.0% |
| TGAGCACAGTGGAGGTAAAT+GGG | + | chr1_2:57216755-57216774 | Msa0079390:CDS | 45.0% | |
| ATGCTAGCTATCCTCATGCA+GGG | + | chr1_2:57216844-57216863 | Msa0079390:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | - | chr1_2:57216875-57216894 | None:intergenic | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | + | chr1_2:57216873-57216892 | Msa0079390:CDS | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | - | chr1_2:57216889-57216908 | None:intergenic | 45.0% | |
| GATACAAGATTGTTGCTGCC+GGG | + | chr1_2:57216952-57216971 | Msa0079390:CDS | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | + | chr1_2:57217168-57217187 | Msa0079390:CDS | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | - | chr1_2:57217173-57217192 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | + | chr1_2:57217173-57217192 | Msa0079390:CDS | 45.0% | |
| ACTAGCCATTTCTCATGAGC+TGG | + | chr1_2:57217237-57217256 | Msa0079390:three_prime_UTR | 45.0% | |
| TGGATCCAGCTCATGAGAAA+TGG | - | chr1_2:57217245-57217264 | None:intergenic | 45.0% | |
| GACGGACCAGATATCAAGTT+TGG | - | chr1_2:57217455-57217474 | None:intergenic | 45.0% | |
| TCCGTCCAATCTAGATCCAA+CGG | + | chr1_2:57217469-57217488 | Msa0079390:three_prime_UTR | 45.0% | |
| GATACATGGCGACGATATCT+TGG | - | chr1_2:57217609-57217628 | None:intergenic | 45.0% | |
| TTCCTTCACCTCTTCCGCAA+TGG | + | chr1_2:57215169-57215188 | Msa0079390:CDS | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | - | chr1_2:57215647-57215666 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | + | chr1_2:57215644-57215663 | Msa0079390:CDS | 50.0% | |
| GTGGCAGTAGTAACCAAGAC+AGG | - | chr1_2:57215785-57215804 | None:intergenic | 50.0% | |
| ACAAGAACGTGTCCTCGCAA+CGG | - | chr1_2:57215820-57215839 | None:intergenic | 50.0% | |
| GACTCGGAACAATCAGCTTG+AGG | - | chr1_2:57215865-57215884 | None:intergenic | 50.0% | |
| AAGAGCTGGGGATTCTGACT+CGG | - | chr1_2:57215881-57215900 | None:intergenic | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | + | chr1_2:57215963-57215982 | Msa0079390:CDS | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | + | chr1_2:57215964-57215983 | Msa0079390:CDS | 50.0% | |
| ! | CCGACGGCTTTATAACCCTT+TGG | - | chr1_2:57215982-57216001 | None:intergenic | 50.0% |
| GGTGGTAACTACTATGCCGA+CGG | - | chr1_2:57215998-57216017 | None:intergenic | 50.0% | |
| GCTAGCATACCTCTATCGCA+AGG | - | chr1_2:57216150-57216169 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | + | chr1_2:57216435-57216454 | Msa0079390:CDS | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | + | chr1_2:57216438-57216457 | Msa0079390:CDS | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | - | chr1_2:57216570-57216589 | None:intergenic | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | - | chr1_2:57216617-57216636 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | - | chr1_2:57216618-57216637 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | + | chr1_2:57216673-57216692 | Msa0079390:CDS | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | + | chr1_2:57216674-57216693 | Msa0079390:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | + | chr1_2:57216754-57216773 | Msa0079390:CDS | 50.0% | |
| CATGCTAGCTATCCTCATGC+AGG | + | chr1_2:57216843-57216862 | Msa0079390:CDS | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | - | chr1_2:57216858-57216877 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | + | chr1_2:57216857-57216876 | Msa0079390:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | + | chr1_2:57216858-57216877 | Msa0079390:CDS | 50.0% | |
| ATTGTTGCTGCCGGGTATCT+TGG | + | chr1_2:57216960-57216979 | Msa0079390:CDS | 50.0% | |
| GACTCCATCACCAAGATACC+CGG | - | chr1_2:57216973-57216992 | None:intergenic | 50.0% | |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1_2:57217133-57217152 | Msa0079390:CDS | 50.0% |
| TCCTCACCAGAAAGCTCTGT+TGG | - | chr1_2:57217137-57217156 | None:intergenic | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1_2:57217136-57217155 | Msa0079390:CDS | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1_2:57217137-57217156 | Msa0079390:CDS | 50.0% |
| TCCTTCTCCTTTGGACCAGT+TGG | - | chr1_2:57217164-57217183 | None:intergenic | 50.0% | |
| GCCGTTGGATCTAGATTGGA+CGG | - | chr1_2:57217473-57217492 | None:intergenic | 50.0% | |
| CACTATCATCAGCACATCGG+TGG | - | chr1_2:57217495-57217514 | None:intergenic | 50.0% | |
| !! | TACTCAGGTGGCGGTTTTGC+CGG | + | chr1_2:57215625-57215644 | Msa0079390:intron | 55.0% |
| GCCGGTGGAAGAATATCCCT+TGG | + | chr1_2:57215643-57215662 | Msa0079390:CDS | 55.0% | |
| GCAACGGCTGATCATTGGAG+TGG | - | chr1_2:57215804-57215823 | None:intergenic | 55.0% | |
| TCCAATGATCAGCCGTTGCG+AGG | + | chr1_2:57215805-57215824 | Msa0079390:CDS | 55.0% | |
| TCCTCGCAACGGCTGATCAT+TGG | - | chr1_2:57215809-57215828 | None:intergenic | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | + | chr1_2:57215824-57215843 | Msa0079390:CDS | 55.0% | |
| AGGACACGTTCTTGTCGCTC+GGG | + | chr1_2:57215825-57215844 | Msa0079390:CDS | 55.0% | |
| !! | ACATGCCATCATCGGTGTCG+TGG | + | chr1_2:57216349-57216368 | Msa0079390:CDS | 55.0% |
| GGTGAAGTTGCTCACGCGAA+GGG | - | chr1_2:57216709-57216728 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | + | chr1_2:57216708-57216727 | Msa0079390:CDS | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | + | chr1_2:57216718-57216737 | Msa0079390:CDS | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1_2:57217138-57217157 | Msa0079390:CDS | 55.0% |
| GCCAACTGGTCCAAAGGAGA+AGG | + | chr1_2:57217160-57217179 | Msa0079390:CDS | 55.0% | |
| GGTGGCCGTTGGATCTAGAT+TGG | - | chr1_2:57217477-57217496 | None:intergenic | 55.0% | |
| ! | GGTGTATAGGAGGTGTGCCT+CGG | + | chr1_2:57217645-57217664 | Msa0079390:three_prime_UTR | 55.0% |
| GGCCATTGCGGAAGAGGTGA+AGG | - | chr1_2:57215174-57215193 | None:intergenic | 60.0% | |
| CCTTGTGGCCATTGCGGAAG+AGG | - | chr1_2:57215180-57215199 | None:intergenic | 60.0% | |
| CCTCTTCCGCAATGGCCACA+AGG | + | chr1_2:57215177-57215196 | Msa0079390:CDS | 60.0% | |
| CGGTGAAGTTGCTCACGCGA+AGG | - | chr1_2:57216710-57216729 | None:intergenic | 60.0% | |
| GCTGCCGGGTATCTTGGTGA+TGG | + | chr1_2:57216966-57216985 | Msa0079390:CDS | 60.0% | |
| TACGCATTCACGCAGTCGGC+AGG | + | chr1_2:57217353-57217372 | Msa0079390:three_prime_UTR | 60.0% | |
| GCAGGCACGTCAGTGGTCAT+TGG | + | chr1_2:57217371-57217390 | Msa0079390:three_prime_UTR | 60.0% | |
| ATCAGCACATCGGTGGCCGT+TGG | - | chr1_2:57217488-57217507 | None:intergenic | 60.0% | |
| !! | TCAGGTGGCGGTTTTGCCGG+TGG | + | chr1_2:57215628-57215647 | Msa0079390:intron | 65.0% |
| TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1_2:57217146-57217165 | Msa0079390:CDS | 65.0% | |
| GGAGGGGCCAACTGGTCCAA+AGG | + | chr1_2:57217154-57217173 | Msa0079390:CDS | 65.0% | |
| GCAGTCGGCAGGCACGTCAG+TGG | + | chr1_2:57217364-57217383 | Msa0079390:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57215039 | 57217917 | 57215039 | ID=Msa0079390;Name=Msa0079390 |
| chr1_2 | mRNA | 57215039 | 57217917 | 57215039 | ID=Msa0079390-mRNA-1;Parent=Msa0079390;Name=Msa0079390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=57|1|1|1|1|1|2|706|560 |
| chr1_2 | exon | 57215039 | 57215198 | 57215039 | ID=Msa0079390-mRNA-1:exon:18038;Parent=Msa0079390-mRNA-1 |
| chr1_2 | exon | 57215632 | 57217917 | 57215632 | ID=Msa0079390-mRNA-1:exon:18039;Parent=Msa0079390-mRNA-1 |
| chr1_2 | five_prime_UTR | 57215039 | 57215095 | 57215039 | ID=Msa0079390-mRNA-1:five_prime_utr;Parent=Msa0079390-mRNA-1 |
| chr1_2 | CDS | 57215096 | 57215198 | 57215096 | ID=Msa0079390-mRNA-1:cds;Parent=Msa0079390-mRNA-1 |
| chr1_2 | CDS | 57215632 | 57217211 | 57215632 | ID=Msa0079390-mRNA-1:cds;Parent=Msa0079390-mRNA-1 |
| chr1_2 | three_prime_UTR | 57217212 | 57217917 | 57217212 | ID=Msa0079390-mRNA-1:three_prime_utr;Parent=Msa0079390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
