Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129700 | XP_004496082.1 | 84.444 | 180 | 23 | 1 | 1 | 175 | 1 | 180 | 7.68e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129700 | sp|O82081|UCC1_ARATH | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 1.63e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129700 | A0A1S2XXN4 | 84.444 | 180 | 23 | 1 | 1 | 175 | 1 | 180 | 3.67e-107 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016310 | Msa0129700 | 0.952448 | 2.369464e-110 | -8.615850e-47 |
| Msa0083340 | Msa0129700 | 0.850543 | 1.586518e-60 | -8.615850e-47 |
| Msa0129700 | Msa0304570 | 0.800620 | 1.323000e-48 | -8.615850e-47 |
| Msa0129700 | Msa0430240 | 0.800224 | 1.593509e-48 | -8.615850e-47 |
| Msa0129700 | Msa1012710 | 0.836208 | 1.070387e-56 | -8.615850e-47 |
| Msa0129700 | Msa1012800 | 0.867432 | 1.375088e-65 | -8.615850e-47 |
| Msa0129700 | Msa1054250 | 0.810828 | 9.491952e-51 | -8.615850e-47 |
| Msa0129700 | Msa1094410 | 0.843020 | 1.811182e-58 | -8.615850e-47 |
| Msa0129700 | Msa1131270 | 0.819577 | 1.079847e-52 | -8.615850e-47 |
| Msa0129700 | Msa1203440 | 0.804197 | 2.424798e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129700 | MtrunA17_Chr1g0196801 | 89.444 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 2.23e-107 | 304 |
| Msa0129700 | MtrunA17_Chr2g0323021 | 38.519 | 135 | 75 | 4 | 3 | 136 | 9 | 136 | 2.93e-28 | 105 |
| Msa0129700 | MtrunA17_Chr3g0132441 | 42.609 | 115 | 65 | 1 | 4 | 118 | 8 | 121 | 4.45e-28 | 103 |
| Msa0129700 | MtrunA17_Chr8g0335571 | 40.517 | 116 | 61 | 2 | 4 | 117 | 11 | 120 | 3.19e-27 | 101 |
| Msa0129700 | MtrunA17_Chr3g0132701 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 3.91e-26 | 99.4 |
| Msa0129700 | MtrunA17_Chr3g0132511 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 5.88e-26 | 99.0 |
| Msa0129700 | MtrunA17_Chr8g0335531 | 31.461 | 178 | 102 | 4 | 4 | 167 | 11 | 182 | 1.30e-25 | 97.1 |
| Msa0129700 | MtrunA17_Chr3g0132431 | 34.752 | 141 | 83 | 2 | 5 | 145 | 11 | 142 | 1.80e-25 | 96.7 |
| Msa0129700 | MtrunA17_Chr6g0481491 | 36.441 | 118 | 71 | 1 | 1 | 118 | 10 | 123 | 1.92e-24 | 94.7 |
| Msa0129700 | MtrunA17_Chr5g0394321 | 31.056 | 161 | 103 | 3 | 1 | 153 | 4 | 164 | 8.98e-24 | 92.0 |
| Msa0129700 | MtrunA17_Chr4g0064041 | 42.574 | 101 | 53 | 2 | 22 | 117 | 190 | 290 | 5.85e-22 | 90.9 |
| Msa0129700 | MtrunA17_Chr4g0064041 | 33.824 | 136 | 83 | 3 | 4 | 134 | 10 | 143 | 1.79e-16 | 75.9 |
| Msa0129700 | MtrunA17_Chr3g0132411 | 38.532 | 109 | 67 | 0 | 20 | 128 | 62 | 170 | 1.21e-21 | 86.3 |
| Msa0129700 | MtrunA17_Chr1g0205701 | 34.167 | 120 | 75 | 3 | 1 | 117 | 4 | 122 | 4.42e-21 | 85.1 |
| Msa0129700 | MtrunA17_Chr6g0453801 | 33.129 | 163 | 91 | 5 | 4 | 157 | 16 | 169 | 6.73e-21 | 84.3 |
| Msa0129700 | MtrunA17_Chr6g0453921 | 38.235 | 136 | 78 | 4 | 4 | 136 | 19 | 151 | 7.09e-21 | 84.7 |
| Msa0129700 | MtrunA17_Chr6g0459441 | 39.394 | 99 | 59 | 1 | 20 | 117 | 23 | 121 | 4.90e-20 | 82.4 |
| Msa0129700 | MtrunA17_Chr1g0211101 | 34.058 | 138 | 79 | 4 | 4 | 130 | 14 | 150 | 1.82e-18 | 78.2 |
| Msa0129700 | MtrunA17_Chr2g0289741 | 29.577 | 142 | 97 | 3 | 4 | 143 | 8 | 148 | 3.02e-18 | 77.4 |
| Msa0129700 | MtrunA17_Chr8g0387804 | 35.938 | 128 | 69 | 4 | 2 | 118 | 3 | 128 | 3.76e-17 | 73.6 |
| Msa0129700 | MtrunA17_Chr8g0360371 | 36.364 | 121 | 73 | 3 | 1 | 117 | 1 | 121 | 4.30e-17 | 77.0 |
| Msa0129700 | MtrunA17_Chr2g0306461 | 34.127 | 126 | 75 | 2 | 1 | 118 | 1 | 126 | 9.18e-17 | 74.3 |
| Msa0129700 | MtrunA17_Chr6g0458331 | 38.462 | 104 | 58 | 2 | 19 | 117 | 33 | 135 | 1.37e-16 | 73.2 |
| Msa0129700 | MtrunA17_Chr8g0380901 | 36.842 | 114 | 68 | 3 | 4 | 116 | 9 | 119 | 3.71e-16 | 70.9 |
| Msa0129700 | MtrunA17_Chr1g0150131 | 32.867 | 143 | 83 | 5 | 4 | 135 | 9 | 149 | 8.40e-16 | 71.2 |
| Msa0129700 | MtrunA17_Chr4g0073901 | 31.061 | 132 | 83 | 4 | 5 | 128 | 9 | 140 | 6.91e-15 | 68.9 |
| Msa0129700 | MtrunA17_Chr8g0385021 | 32.593 | 135 | 82 | 4 | 4 | 130 | 6 | 139 | 1.07e-14 | 70.1 |
| Msa0129700 | MtrunA17_Chr4g0073921 | 34.454 | 119 | 70 | 4 | 5 | 115 | 9 | 127 | 1.35e-14 | 69.7 |
| Msa0129700 | MtrunA17_Chr2g0324711 | 33.577 | 137 | 80 | 4 | 4 | 130 | 7 | 142 | 1.44e-14 | 70.1 |
| Msa0129700 | MtrunA17_Chr7g0253641 | 29.268 | 123 | 84 | 2 | 2 | 121 | 5 | 127 | 4.27e-14 | 67.8 |
| Msa0129700 | MtrunA17_Chr3g0125791 | 35.294 | 102 | 62 | 3 | 17 | 117 | 27 | 125 | 8.29e-14 | 64.7 |
| Msa0129700 | MtrunA17_Chr7g0253631 | 29.310 | 116 | 81 | 1 | 4 | 118 | 7 | 122 | 1.39e-13 | 66.6 |
| Msa0129700 | MtrunA17_Chr2g0331181 | 29.787 | 141 | 89 | 4 | 9 | 142 | 11 | 148 | 1.88e-13 | 65.1 |
| Msa0129700 | MtrunA17_Chr1g0188981 | 36.190 | 105 | 61 | 3 | 23 | 121 | 29 | 133 | 2.84e-13 | 64.7 |
| Msa0129700 | MtrunA17_Chr4g0041811 | 32.710 | 107 | 67 | 2 | 19 | 120 | 28 | 134 | 3.22e-13 | 65.1 |
| Msa0129700 | MtrunA17_Chr7g0253681 | 31.405 | 121 | 80 | 3 | 4 | 121 | 7 | 127 | 3.46e-13 | 63.9 |
| Msa0129700 | MtrunA17_Chr1g0177341 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 3.97e-13 | 63.5 |
| Msa0129700 | MtrunA17_Chr1g0177331 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 3.97e-13 | 63.5 |
| Msa0129700 | MtrunA17_Chr2g0301431 | 36.207 | 116 | 68 | 4 | 4 | 116 | 11 | 123 | 5.77e-13 | 62.4 |
| Msa0129700 | MtrunA17_Chr3g0136871 | 33.628 | 113 | 67 | 3 | 26 | 130 | 31 | 143 | 6.83e-13 | 63.5 |
| Msa0129700 | MtrunA17_Chr4g0039721 | 33.333 | 123 | 74 | 3 | 4 | 119 | 12 | 133 | 7.60e-13 | 63.5 |
| Msa0129700 | MtrunA17_Chr4g0040291 | 30.822 | 146 | 96 | 3 | 4 | 146 | 6 | 149 | 1.09e-12 | 63.2 |
| Msa0129700 | MtrunA17_Chr4g0062341 | 24.859 | 177 | 117 | 4 | 4 | 173 | 12 | 179 | 1.14e-12 | 63.2 |
| Msa0129700 | MtrunA17_Chr4g0062311 | 24.859 | 177 | 117 | 4 | 4 | 173 | 12 | 179 | 1.14e-12 | 63.2 |
| Msa0129700 | MtrunA17_Chr6g0483981 | 34.307 | 137 | 80 | 5 | 20 | 148 | 24 | 158 | 2.26e-12 | 64.3 |
| Msa0129700 | MtrunA17_Chr2g0319611 | 34.259 | 108 | 64 | 3 | 20 | 120 | 23 | 130 | 2.58e-12 | 63.2 |
| Msa0129700 | MtrunA17_Chr5g0440711 | 29.286 | 140 | 91 | 5 | 2 | 137 | 8 | 143 | 3.10e-12 | 61.2 |
| Msa0129700 | MtrunA17_Chr6g0453791 | 30.986 | 142 | 89 | 5 | 4 | 137 | 7 | 147 | 5.13e-12 | 61.2 |
| Msa0129700 | MtrunA17_Chr7g0253761 | 28.448 | 116 | 82 | 1 | 4 | 118 | 7 | 122 | 7.04e-12 | 60.8 |
| Msa0129700 | MtrunA17_Chr7g0253701 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 9.01e-12 | 60.1 |
| Msa0129700 | MtrunA17_Chr7g0253671 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 9.01e-12 | 60.1 |
| Msa0129700 | MtrunA17_Chr3g0125761 | 30.508 | 118 | 77 | 4 | 1 | 116 | 10 | 124 | 2.14e-11 | 58.5 |
| Msa0129700 | MtrunA17_Chr8g0380711 | 36.364 | 99 | 58 | 4 | 20 | 116 | 25 | 120 | 3.38e-11 | 57.8 |
| Msa0129700 | MtrunA17_Chr8g0385031 | 31.356 | 118 | 76 | 3 | 4 | 117 | 6 | 122 | 3.51e-11 | 60.5 |
| Msa0129700 | MtrunA17_Chr4g0001571 | 30.693 | 101 | 68 | 2 | 19 | 118 | 25 | 124 | 5.94e-11 | 58.2 |
| Msa0129700 | MtrunA17_Chr7g0253731 | 26.852 | 108 | 78 | 1 | 1 | 107 | 3 | 110 | 9.07e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129700 | AT5G07475.1 | 49.686 | 159 | 76 | 3 | 1 | 158 | 7 | 162 | 1.31e-48 | 156 |
| Msa0129700 | AT2G32300.1 | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 1.66e-30 | 112 |
| Msa0129700 | AT2G32300.2 | 43.590 | 117 | 65 | 1 | 2 | 117 | 35 | 151 | 5.30e-30 | 111 |
| Msa0129700 | AT2G31050.1 | 39.683 | 126 | 72 | 3 | 7 | 130 | 13 | 136 | 6.54e-24 | 93.2 |
| Msa0129700 | AT5G26330.1 | 39.604 | 101 | 58 | 2 | 20 | 117 | 21 | 121 | 3.20e-21 | 85.9 |
| Msa0129700 | AT2G25060.1 | 39.073 | 151 | 70 | 5 | 4 | 136 | 16 | 162 | 3.46e-21 | 85.9 |
| Msa0129700 | AT3G60270.1 | 38.776 | 98 | 60 | 0 | 20 | 117 | 23 | 120 | 4.08e-21 | 85.9 |
| Msa0129700 | AT3G27200.1 | 35.833 | 120 | 73 | 3 | 1 | 117 | 3 | 121 | 4.70e-21 | 85.1 |
| Msa0129700 | AT2G26720.1 | 36.207 | 116 | 69 | 3 | 4 | 117 | 13 | 125 | 9.77e-21 | 85.1 |
| Msa0129700 | AT5G25090.1 | 38.596 | 114 | 65 | 2 | 9 | 117 | 13 | 126 | 3.31e-20 | 83.6 |
| Msa0129700 | AT4G31840.1 | 34.752 | 141 | 82 | 5 | 5 | 135 | 6 | 146 | 1.00e-17 | 76.6 |
| Msa0129700 | AT3G60280.1 | 37.755 | 98 | 61 | 0 | 20 | 117 | 21 | 118 | 1.05e-17 | 77.8 |
| Msa0129700 | AT1G72230.1 | 30.894 | 123 | 83 | 1 | 31 | 151 | 31 | 153 | 1.85e-17 | 76.3 |
| Msa0129700 | AT3G20570.1 | 40.000 | 105 | 59 | 2 | 20 | 120 | 27 | 131 | 2.31e-17 | 76.3 |
| Msa0129700 | AT3G17675.1 | 30.769 | 117 | 78 | 2 | 4 | 117 | 11 | 127 | 8.77e-17 | 72.8 |
| Msa0129700 | AT5G53870.1 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 2.13e-16 | 75.9 |
| Msa0129700 | AT5G53870.2 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 2.30e-16 | 75.9 |
| Msa0129700 | AT2G44790.1 | 38.000 | 100 | 56 | 2 | 20 | 117 | 29 | 124 | 1.46e-15 | 71.6 |
| Msa0129700 | AT4G28365.1 | 29.221 | 154 | 100 | 3 | 5 | 149 | 11 | 164 | 1.61e-15 | 71.2 |
| Msa0129700 | AT2G23990.1 | 36.029 | 136 | 74 | 5 | 9 | 131 | 13 | 148 | 2.49e-15 | 70.9 |
| Msa0129700 | AT1G45063.2 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 4.21e-15 | 71.2 |
| Msa0129700 | AT1G45063.2 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 1.63e-11 | 61.6 |
| Msa0129700 | AT1G45063.1 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 6.04e-15 | 71.6 |
| Msa0129700 | AT1G45063.1 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 2.11e-11 | 61.6 |
| Msa0129700 | AT1G79800.1 | 34.454 | 119 | 66 | 4 | 23 | 130 | 34 | 151 | 7.15e-15 | 69.3 |
| Msa0129700 | AT4G27520.1 | 35.897 | 117 | 68 | 3 | 4 | 117 | 16 | 128 | 2.24e-14 | 70.1 |
| Msa0129700 | AT4G12880.1 | 32.479 | 117 | 75 | 3 | 5 | 118 | 11 | 126 | 3.36e-14 | 66.6 |
| Msa0129700 | AT1G64640.1 | 36.364 | 121 | 70 | 3 | 19 | 132 | 29 | 149 | 3.45e-14 | 67.8 |
| Msa0129700 | AT3G53330.1 | 32.787 | 122 | 77 | 4 | 23 | 139 | 188 | 309 | 1.58e-13 | 67.4 |
| Msa0129700 | AT3G18590.1 | 30.894 | 123 | 77 | 3 | 2 | 117 | 5 | 126 | 2.48e-13 | 65.5 |
| Msa0129700 | AT4G30590.1 | 34.188 | 117 | 70 | 4 | 4 | 113 | 8 | 124 | 6.24e-13 | 64.3 |
| Msa0129700 | AT1G22480.1 | 32.231 | 121 | 76 | 2 | 1 | 120 | 1 | 116 | 8.32e-13 | 63.5 |
| Msa0129700 | AT5G57920.1 | 34.783 | 92 | 53 | 2 | 37 | 127 | 42 | 127 | 1.67e-12 | 62.8 |
| Msa0129700 | AT4G32490.1 | 33.058 | 121 | 76 | 3 | 4 | 121 | 14 | 132 | 1.83e-12 | 63.5 |
| Msa0129700 | AT5G57920.2 | 34.783 | 92 | 53 | 2 | 37 | 127 | 41 | 126 | 3.29e-12 | 62.0 |
| Msa0129700 | AT5G57920.3 | 32.710 | 107 | 61 | 3 | 26 | 127 | 59 | 159 | 3.51e-12 | 62.8 |
| Msa0129700 | AT3G01070.1 | 38.938 | 113 | 66 | 2 | 9 | 118 | 13 | 125 | 5.12e-12 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCGCTCTTCTTTGTTGA+TGG | 0.292064 | 1_3:+59780279 | None:intergenic |
| TCTGATCCAGCTACTGCTTT+TGG | 0.293698 | 1_3:+59780315 | None:intergenic |
| TATAGTTTATATTGCTGTTA+TGG | 0.320304 | 1_3:-59780226 | Msa0129700:CDS |
| ACAAAAGTGTTGGCAAATTA+CGG | 0.407043 | 1_3:-59780477 | Msa0129700:CDS |
| GTGTTGGCAAATTACGGAAA+TGG | 0.435345 | 1_3:-59780471 | Msa0129700:CDS |
| CATTGACAAGAGCCGGAGAC+AGG | 0.497365 | 1_3:-59780434 | Msa0129700:CDS |
| CTGTCTCCGGCTCTTGTCAA+TGG | 0.513474 | 1_3:+59780435 | None:intergenic |
| CTAGCACCAAAAGCAGTAGC+TGG | 0.518482 | 1_3:-59780321 | Msa0129700:CDS |
| CTGTTGGAGATAGCTCTGGC+TGG | 0.524284 | 1_3:-59780983 | Msa0129700:CDS |
| TACACTGTTGGAGATAGCTC+TGG | 0.540204 | 1_3:-59780987 | Msa0129700:CDS |
| AACAAACTGTATTGCCTTGG+TGG | 0.541279 | 1_3:-59780396 | Msa0129700:CDS |
| ACATACAAAATACCTGTCTC+CGG | 0.555623 | 1_3:+59780422 | None:intergenic |
| ACGGTGCCATTGACAAGAGC+CGG | 0.574751 | 1_3:-59780441 | Msa0129700:CDS |
| ATGCAACACAACAAAAGTGT+TGG | 0.577530 | 1_3:-59780487 | Msa0129700:CDS |
| TCAGCAACTACCTACACTGT+TGG | 0.586019 | 1_3:-59780999 | Msa0129700:CDS |
| TGTTGGAGATAGCTCTGGCT+GGG | 0.608785 | 1_3:-59780982 | Msa0129700:CDS |
| CAGTAGCTGGATCAGATCAA+AGG | 0.609991 | 1_3:-59780308 | Msa0129700:CDS |
| AGAGCTATCTCCAACAGTGT+AGG | 0.611707 | 1_3:+59780989 | None:intergenic |
| CATGTTCATGTAGAAGATGA+CGG | 0.616290 | 1_3:-59780363 | Msa0129700:CDS |
| ATCGACATACAGTGTGGACG+AGG | 0.624451 | 1_3:-59780532 | Msa0129700:CDS |
| TTAGCTCTAATCTAGAAACA+TGG | 0.627015 | 1_3:-59780956 | Msa0129700:CDS |
| TAGCTCTAATCTAGAAACAT+GGG | 0.636260 | 1_3:-59780955 | Msa0129700:CDS |
| GGAAACAAACTGTATTGCCT+TGG | 0.642701 | 1_3:-59780399 | Msa0129700:CDS |
| ACAAACTGTATTGCCTTGGT+GGG | 0.646382 | 1_3:-59780395 | Msa0129700:CDS |
| CATGAAGTTTCATCCCACCA+AGG | 0.728162 | 1_3:+59780382 | None:intergenic |
| ATATTCATCGACATACAGTG+TGG | 0.739211 | 1_3:-59780538 | Msa0129700:CDS |
| TTACGGAAATGGAAACACGA+CGG | 0.772125 | 1_3:-59780460 | Msa0129700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATATTTGTATTTTTG+AGG | - | chr1_3:59780382-59780401 | Msa0129700:CDS | 10.0% |
| !!! | ATTTATATTTGTATTTTTGA+GGG | - | chr1_3:59780383-59780402 | Msa0129700:CDS | 10.0% |
| !!! | TATTTATATTTGTATTTTTG+AGG | - | chr1_3:59780382-59780401 | Msa0129700:CDS | 10.0% |
| !!! | ATTTATATTTGTATTTTTGA+GGG | - | chr1_3:59780383-59780402 | Msa0129700:CDS | 10.0% |
| !! | AATTATTGAATGAAAGATAA+AGG | + | chr1_3:59780216-59780235 | None:intergenic | 15.0% |
| !! | ATAATTCAATTTATGTGAAT+TGG | + | chr1_3:59780291-59780310 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATCCATATA+TGG | + | chr1_3:59780353-59780372 | None:intergenic | 15.0% |
| !! | AATTATTGAATGAAAGATAA+AGG | + | chr1_3:59780216-59780235 | None:intergenic | 15.0% |
| !! | ATAATTCAATTTATGTGAAT+TGG | + | chr1_3:59780291-59780310 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATCCATATA+TGG | + | chr1_3:59780353-59780372 | None:intergenic | 15.0% |
| !!! | TGATTGATTTTGATATGTTA+TGG | + | chr1_3:59780318-59780337 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | - | chr1_3:59780485-59780504 | Msa0129700:CDS | 20.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | + | chr1_3:59780552-59780571 | None:intergenic | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | - | chr1_3:59780876-59780895 | Msa0129700:intron | 20.0% |
| !!! | AAAAAAATTACAGTTTTGCT+TGG | - | chr1_3:59781009-59781028 | Msa0129700:CDS | 20.0% |
| !!! | TGATTGATTTTGATATGTTA+TGG | + | chr1_3:59780318-59780337 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | - | chr1_3:59780485-59780504 | Msa0129700:CDS | 20.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | + | chr1_3:59780552-59780571 | None:intergenic | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | - | chr1_3:59780876-59780895 | Msa0129700:intron | 20.0% |
| !!! | AAAAAAATTACAGTTTTGCT+TGG | - | chr1_3:59781009-59781028 | Msa0129700:CDS | 20.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | - | chr1_3:59780172-59780191 | Msa0129700:three_prime_UTR | 25.0% |
| !! | GACAATTTTTACAACCATTT+GGG | - | chr1_3:59780507-59780526 | Msa0129700:CDS | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | + | chr1_3:59780524-59780543 | None:intergenic | 25.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | - | chr1_3:59780172-59780191 | Msa0129700:three_prime_UTR | 25.0% |
| !! | GACAATTTTTACAACCATTT+GGG | - | chr1_3:59780507-59780526 | Msa0129700:CDS | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | + | chr1_3:59780524-59780543 | None:intergenic | 25.0% |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | - | chr1_3:59780066-59780085 | Msa0129700:three_prime_UTR | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | - | chr1_3:59780146-59780165 | Msa0129700:three_prime_UTR | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | - | chr1_3:59780147-59780166 | Msa0129700:three_prime_UTR | 30.0% |
| ATTCTTCTTGTGACCATATA+TGG | - | chr1_3:59780337-59780356 | Msa0129700:CDS | 30.0% | |
| ! | GGACAATTTTTACAACCATT+TGG | - | chr1_3:59780506-59780525 | Msa0129700:CDS | 30.0% |
| !! | ACAAAAGTGTTGGCAAATTA+CGG | - | chr1_3:59780625-59780644 | Msa0129700:intron | 30.0% |
| ! | CTGTTATGGTAGCTTTTTAT+GGG | - | chr1_3:59780890-59780909 | Msa0129700:intron | 30.0% |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | - | chr1_3:59780066-59780085 | Msa0129700:three_prime_UTR | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | - | chr1_3:59780146-59780165 | Msa0129700:three_prime_UTR | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | - | chr1_3:59780147-59780166 | Msa0129700:three_prime_UTR | 30.0% |
| ATTCTTCTTGTGACCATATA+TGG | - | chr1_3:59780337-59780356 | Msa0129700:CDS | 30.0% | |
| ! | GGACAATTTTTACAACCATT+TGG | - | chr1_3:59780506-59780525 | Msa0129700:CDS | 30.0% |
| !! | ACAAAAGTGTTGGCAAATTA+CGG | - | chr1_3:59780625-59780644 | Msa0129700:intron | 30.0% |
| ! | CTGTTATGGTAGCTTTTTAT+GGG | - | chr1_3:59780890-59780909 | Msa0129700:intron | 30.0% |
| ATATTCATCGACATACAGTG+TGG | - | chr1_3:59780564-59780583 | Msa0129700:intron | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | - | chr1_3:59780615-59780634 | Msa0129700:intron | 35.0% |
| ACATACAAAATACCTGTCTC+CGG | + | chr1_3:59780683-59780702 | None:intergenic | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | - | chr1_3:59780739-59780758 | Msa0129700:intron | 35.0% | |
| !! | AAGAGCGCAGAATTTTCAAA+GGG | - | chr1_3:59780835-59780854 | Msa0129700:intron | 35.0% |
| ! | GCTGTTATGGTAGCTTTTTA+TGG | - | chr1_3:59780889-59780908 | Msa0129700:intron | 35.0% |
| ATATTCATCGACATACAGTG+TGG | - | chr1_3:59780564-59780583 | Msa0129700:intron | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | - | chr1_3:59780615-59780634 | Msa0129700:intron | 35.0% |
| ACATACAAAATACCTGTCTC+CGG | + | chr1_3:59780683-59780702 | None:intergenic | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | - | chr1_3:59780739-59780758 | Msa0129700:intron | 35.0% | |
| !! | AAGAGCGCAGAATTTTCAAA+GGG | - | chr1_3:59780835-59780854 | Msa0129700:intron | 35.0% |
| ! | GCTGTTATGGTAGCTTTTTA+TGG | - | chr1_3:59780889-59780908 | Msa0129700:intron | 35.0% |
| ! | GTGTTGGCAAATTACGGAAA+TGG | - | chr1_3:59780631-59780650 | Msa0129700:intron | 40.0% |
| TTACGGAAATGGAAACACGA+CGG | - | chr1_3:59780642-59780661 | Msa0129700:intron | 40.0% | |
| ! | GGAGACAGGTATTTTGTATG+TGG | - | chr1_3:59780682-59780701 | Msa0129700:intron | 40.0% |
| GGAAACAAACTGTATTGCCT+TGG | - | chr1_3:59780703-59780722 | Msa0129700:intron | 40.0% | |
| AACAAACTGTATTGCCTTGG+TGG | - | chr1_3:59780706-59780725 | Msa0129700:intron | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | - | chr1_3:59780707-59780726 | Msa0129700:intron | 40.0% | |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | + | chr1_3:59780778-59780797 | None:intergenic | 40.0% |
| !! | GAAGAGCGCAGAATTTTCAA+AGG | - | chr1_3:59780834-59780853 | Msa0129700:intron | 40.0% |
| ! | GTGTTGGCAAATTACGGAAA+TGG | - | chr1_3:59780631-59780650 | Msa0129700:intron | 40.0% |
| TTACGGAAATGGAAACACGA+CGG | - | chr1_3:59780642-59780661 | Msa0129700:intron | 40.0% | |
| ! | GGAGACAGGTATTTTGTATG+TGG | - | chr1_3:59780682-59780701 | Msa0129700:intron | 40.0% |
| GGAAACAAACTGTATTGCCT+TGG | - | chr1_3:59780703-59780722 | Msa0129700:intron | 40.0% | |
| AACAAACTGTATTGCCTTGG+TGG | - | chr1_3:59780706-59780725 | Msa0129700:intron | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | - | chr1_3:59780707-59780726 | Msa0129700:intron | 40.0% | |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | + | chr1_3:59780778-59780797 | None:intergenic | 40.0% |
| !! | GAAGAGCGCAGAATTTTCAA+AGG | - | chr1_3:59780834-59780853 | Msa0129700:intron | 40.0% |
| TCAGCAACTACCTACACTGT+TGG | - | chr1_3:59780103-59780122 | Msa0129700:three_prime_UTR | 45.0% | |
| AGAGCTATCTCCAACAGTGT+AGG | + | chr1_3:59780116-59780135 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | - | chr1_3:59780115-59780134 | Msa0129700:three_prime_UTR | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | + | chr1_3:59780723-59780742 | None:intergenic | 45.0% | |
| ! | TCTGATCCAGCTACTGCTTT+TGG | + | chr1_3:59780790-59780809 | None:intergenic | 45.0% |
| CAGTAGCTGGATCAGATCAA+AGG | - | chr1_3:59780794-59780813 | Msa0129700:intron | 45.0% | |
| TCTGCGCTCTTCTTTGTTGA+TGG | + | chr1_3:59780826-59780845 | None:intergenic | 45.0% | |
| TCAGCAACTACCTACACTGT+TGG | - | chr1_3:59780103-59780122 | Msa0129700:three_prime_UTR | 45.0% | |
| AGAGCTATCTCCAACAGTGT+AGG | + | chr1_3:59780116-59780135 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | - | chr1_3:59780115-59780134 | Msa0129700:three_prime_UTR | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | + | chr1_3:59780723-59780742 | None:intergenic | 45.0% | |
| ! | TCTGATCCAGCTACTGCTTT+TGG | + | chr1_3:59780790-59780809 | None:intergenic | 45.0% |
| CAGTAGCTGGATCAGATCAA+AGG | - | chr1_3:59780794-59780813 | Msa0129700:intron | 45.0% | |
| TCTGCGCTCTTCTTTGTTGA+TGG | + | chr1_3:59780826-59780845 | None:intergenic | 45.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | - | chr1_3:59780120-59780139 | Msa0129700:three_prime_UTR | 50.0% |
| ATCGACATACAGTGTGGACG+AGG | - | chr1_3:59780570-59780589 | Msa0129700:intron | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | - | chr1_3:59780781-59780800 | Msa0129700:intron | 50.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | - | chr1_3:59780120-59780139 | Msa0129700:three_prime_UTR | 50.0% |
| ATCGACATACAGTGTGGACG+AGG | - | chr1_3:59780570-59780589 | Msa0129700:intron | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | - | chr1_3:59780781-59780800 | Msa0129700:intron | 50.0% | |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | - | chr1_3:59780119-59780138 | Msa0129700:three_prime_UTR | 55.0% |
| !! | ACGGTGCCATTGACAAGAGC+CGG | - | chr1_3:59780661-59780680 | Msa0129700:intron | 55.0% |
| CTGTCTCCGGCTCTTGTCAA+TGG | + | chr1_3:59780670-59780689 | None:intergenic | 55.0% | |
| CATTGACAAGAGCCGGAGAC+AGG | - | chr1_3:59780668-59780687 | Msa0129700:intron | 55.0% | |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | - | chr1_3:59780119-59780138 | Msa0129700:three_prime_UTR | 55.0% |
| !! | ACGGTGCCATTGACAAGAGC+CGG | - | chr1_3:59780661-59780680 | Msa0129700:intron | 55.0% |
| CTGTCTCCGGCTCTTGTCAA+TGG | + | chr1_3:59780670-59780689 | None:intergenic | 55.0% | |
| CATTGACAAGAGCCGGAGAC+AGG | - | chr1_3:59780668-59780687 | Msa0129700:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59780049 | 59781075 | 59780049 | ID=Msa0129700;Name=Msa0129700 |
| chr1_3 | mRNA | 59780049 | 59781075 | 59780049 | ID=Msa0129700-mRNA-1;Parent=Msa0129700;Name=Msa0129700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|148|175 |
| chr1_3 | exon | 59780049 | 59780567 | 59780049 | ID=Msa0129700-mRNA-1:exon:19463;Parent=Msa0129700-mRNA-1 |
| chr1_3 | exon | 59780919 | 59781075 | 59780919 | ID=Msa0129700-mRNA-1:exon:19462;Parent=Msa0129700-mRNA-1 |
| chr1_3 | CDS | 59780919 | 59781075 | 59780919 | ID=Msa0129700-mRNA-1:cds;Parent=Msa0129700-mRNA-1 |
| chr1_3 | CDS | 59780197 | 59780567 | 59780197 | ID=Msa0129700-mRNA-1:cds;Parent=Msa0129700-mRNA-1 |
| chr1_3 | three_prime_UTR | 59780049 | 59780196 | 59780049 | ID=Msa0129700-mRNA-1:three_prime_utr;Parent=Msa0129700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
