AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012710 MtrunA17_Chr7g0224391 98.169 437 8 0 1 437 1 437 0.0 892
Msa1012710 MtrunA17_Chr3g0132001 66.587 419 137 2 20 437 18 434 0.0 585
Msa1012710 MtrunA17_Chr8g0386141 61.449 428 160 3 12 437 4 428 0.0 537
Msa1012710 MtrunA17_Chr4g0001861 34.483 435 266 7 13 435 3 430 1.50e-84 265
Msa1012710 MtrunA17_Chr2g0334001 34.247 438 262 9 13 435 3 429 1.58e-82 260
Msa1012710 MtrunA17_Chr8g0371821 34.660 427 255 10 23 435 10 426 1.79e-78 249
Msa1012710 MtrunA17_Chr5g0433641 35.659 387 235 8 20 397 14 395 2.76e-76 245
Msa1012710 MtrunA17_Chr2g0306321 36.203 395 230 14 36 412 41 431 1.73e-75 243
Msa1012710 MtrunA17_Chr1g0191081 34.651 430 254 11 19 431 21 440 2.08e-75 242
Msa1012710 MtrunA17_Chr1g0165671 34.635 384 239 7 19 396 30 407 2.05e-74 240
Msa1012710 MtrunA17_Chr7g0273721 34.367 387 239 8 19 395 14 395 2.46e-72 234
Msa1012710 MtrunA17_Chr1g0165661 33.333 423 264 10 20 429 13 430 1.28e-71 233
Msa1012710 MtrunA17_Chr1g0165681 33.596 381 241 8 23 396 16 391 1.06e-70 230
Msa1012710 MtrunA17_Chr7g0273761 32.639 432 265 10 20 433 386 809 3.86e-69 234
Msa1012710 MtrunA17_Chr7g0273761 30.272 294 191 6 150 433 32 321 2.71e-38 147
Msa1012710 MtrunA17_Chr7g0273781 32.376 383 248 5 20 395 47 425 4.00e-67 222
Msa1012710 MtrunA17_Chr7g0273731 32.812 384 247 6 19 395 96 475 1.27e-66 221
Msa1012710 MtrunA17_Chr7g0273791 31.332 383 252 6 20 395 14 392 5.25e-65 216
Msa1012710 MtrunA17_Chr2g0311401 36.000 300 172 5 150 435 6 299 3.14e-64 209
Msa1012710 MtrunA17_Chr3g0087401 30.995 442 265 12 24 432 10 444 4.91e-64 213
Msa1012710 MtrunA17_Chr3g0141851 32.483 431 260 13 22 436 18 433 5.48e-64 213
Msa1012710 MtrunA17_Chr4g0027071 32.143 448 267 15 18 436 14 453 7.00e-61 205
Msa1012710 MtrunA17_Chr7g0235531 30.394 431 282 8 20 435 8 435 1.88e-60 203
Msa1012710 MtrunA17_Chr7g0252731 29.736 417 259 10 22 426 23 417 5.67e-60 201
Msa1012710 MtrunA17_Chr4g0072041 32.506 403 235 9 24 396 22 417 8.65e-59 199
Msa1012710 MtrunA17_Chr1g0165711 32.283 381 211 10 21 396 14 352 1.13e-55 190
Msa1012710 MtrunA17_Chr3g0113821 31.651 436 268 12 20 436 9 433 6.21e-55 188
Msa1012710 MtrunA17_Chr4g0054081 30.025 403 243 9 24 395 17 411 6.87e-49 172
Msa1012710 MtrunA17_Chr7g0253541 30.072 419 241 16 13 391 2 408 3.45e-46 166
Msa1012710 MtrunA17_Chr2g0283361 28.571 413 276 11 39 437 29 436 7.41e-44 159
Msa1012710 MtrunA17_Chr3g0106691 32.000 400 228 15 23 392 63 448 3.39e-43 158
Msa1012710 MtrunA17_Chr6g0470591 31.635 373 229 12 38 392 42 406 1.00e-42 156
Msa1012710 MtrunA17_Chr7g0253531 28.646 384 232 10 51 396 37 416 1.52e-39 147
Msa1012710 MtrunA17_Chr7g0253501 28.643 398 214 12 51 396 37 416 1.36e-38 145
Msa1012710 MtrunA17_Chr3g0106721 34.091 308 185 11 65 360 65 366 1.46e-38 145
Msa1012710 MtrunA17_Chr3g0106661 27.778 450 285 16 23 436 17 462 1.89e-37 142
Msa1012710 MtrunA17_Chr7g0270771 34.643 280 151 10 23 294 12 267 2.01e-37 137
Msa1012710 MtrunA17_Chr3g0106761 31.548 336 189 15 82 392 28 347 3.16e-35 134
Msa1012710 MtrunA17_Chr3g0123061 26.866 402 247 15 23 408 12 382 2.04e-34 132
Msa1012710 MtrunA17_Chr3g0106741 31.845 336 188 17 82 392 59 378 2.51e-33 130
Msa1012710 MtrunA17_Chr5g0442691 28.133 391 239 13 37 393 54 436 5.10e-33 130
Msa1012710 MtrunA17_Chr5g0442701 27.877 391 240 13 37 393 31 413 3.64e-32 127
Msa1012710 MtrunA17_Chr6g0471971 31.890 254 130 9 165 408 1 221 4.24e-32 121
Msa1012710 MtrunA17_Chr3g0134091 30.159 315 194 10 56 356 56 358 1.04e-29 120
Msa1012710 MtrunA17_Chr7g0252771 26.953 256 173 4 189 435 1 251 1.08e-29 116
Msa1012710 MtrunA17_Chr3g0134071 27.094 406 251 16 55 432 57 445 1.85e-27 114
Msa1012710 MtrunA17_Chr4g0053061 26.980 404 248 17 58 429 77 465 4.40e-27 113
Msa1012710 MtrunA17_Chr3g0106711 37.037 189 105 5 23 199 17 203 5.88e-27 108
Msa1012710 MtrunA17_Chr5g0442721 25.355 422 268 15 9 393 4 415 1.18e-26 111
Msa1012710 MtrunA17_Chr8g0359251 25.707 389 258 10 63 433 58 433 2.97e-26 110
Msa1012710 MtrunA17_Chr8g0374911 26.000 400 257 16 58 429 70 458 3.35e-26 110
Msa1012710 MtrunA17_Chr3g0134121 28.610 367 226 13 14 356 5 359 3.39e-26 110
Msa1012710 MtrunA17_Chr4g0053111 26.617 402 257 13 54 429 46 435 3.61e-26 110
Msa1012710 MtrunA17_Chr3g0134041 25.686 401 260 13 55 432 53 438 4.76e-26 109
Msa1012710 MtrunA17_Chr3g0125001 26.154 390 265 12 63 437 50 431 1.76e-25 107
Msa1012710 MtrunA17_Chr6g0471381 30.151 199 129 6 201 395 7 199 2.33e-25 104
Msa1012710 MtrunA17_Chr8g0374641 27.047 403 244 19 58 429 49 432 5.00e-25 106
Msa1012710 MtrunA17_Chr3g0097841 32.212 208 125 3 244 435 33 240 7.09e-25 102
Msa1012710 MtrunA17_Chr4g0053081 26.396 394 248 16 61 429 57 433 1.24e-24 105
Msa1012710 MtrunA17_Chr4g0010361 26.154 390 255 14 63 429 50 429 1.34e-24 105
Msa1012710 MtrunA17_Chr3g0095731 25.455 385 240 12 45 394 41 413 1.37e-24 105
Msa1012710 MtrunA17_Chr4g0010311 27.202 386 245 13 68 429 55 428 1.67e-24 105
Msa1012710 MtrunA17_Chr3g0095721 25.915 355 226 11 68 394 72 417 2.81e-24 104
Msa1012710 MtrunA17_Chr4g0010331 25.788 349 229 11 63 392 50 387 3.03e-24 104
Msa1012710 MtrunA17_Chr4g0004691 28.571 175 121 2 14 188 3 173 5.30e-24 98.6
Msa1012710 MtrunA17_Chr4g0053091 25.843 356 210 11 61 392 60 385 1.21e-23 102
Msa1012710 MtrunA17_Chr7g0273741 36.296 135 83 2 20 151 14 148 1.88e-23 95.9
Msa1012710 MtrunA17_Chr4g0010121 25.879 398 254 14 58 429 89 471 5.61e-23 100
Msa1012710 MtrunA17_Chr6g0471371 37.179 156 90 4 19 170 12 163 7.62e-23 95.1
Msa1012710 MtrunA17_Chr1g0199561 24.598 435 276 15 13 413 1 417 9.01e-23 100
Msa1012710 MtrunA17_Chr5g0408911 25.124 402 259 15 37 415 41 423 9.43e-23 100
Msa1012710 MtrunA17_Chr3g0134061 24.408 422 268 15 14 395 4 414 1.45e-22 99.8
Msa1012710 MtrunA17_Chr8g0354371 26.686 341 231 10 63 392 59 391 1.53e-22 99.4
Msa1012710 MtrunA17_Chr6g0467861 26.834 477 283 23 13 437 45 507 1.81e-22 99.8
Msa1012710 MtrunA17_Chr3g0098961 37.705 122 73 2 20 138 17 138 2.92e-22 93.6
Msa1012710 MtrunA17_Chr7g0274021 25.070 359 250 8 12 362 5 352 4.83e-22 98.2
Msa1012710 MtrunA17_Chr4g0010351 29.603 277 169 11 68 327 55 322 1.95e-21 95.5
Msa1012710 MtrunA17_Chr3g0113181 24.796 367 221 11 68 392 66 419 2.21e-21 96.3
Msa1012710 MtrunA17_Chr7g0224131 24.740 384 264 12 63 429 50 425 2.57e-21 95.9
Msa1012710 MtrunA17_Chr8g0376901 25.122 410 249 16 13 392 1 382 3.97e-21 95.1
Msa1012710 MtrunA17_Chr5g0436621 23.575 386 227 11 67 393 60 436 4.22e-21 95.5
Msa1012710 MtrunA17_Chr8g0361781 23.724 392 263 13 20 392 12 386 4.69e-21 95.1
Msa1012710 MtrunA17_Chr4g0010381 26.154 390 243 17 68 429 55 427 3.19e-20 92.4
Msa1012710 MtrunA17_Chr1g0165741 34.815 135 85 2 20 151 13 147 3.17e-19 84.0
Msa1012710 MtrunA17_Chr8g0361771 24.079 407 257 13 15 392 3 386 4.07e-19 89.4
Msa1012710 MtrunA17_Chr5g0438701 21.995 441 297 15 13 432 1 415 4.86e-19 89.0
Msa1012710 MtrunA17_Chr3g0134101 27.097 310 194 9 56 356 74 360 7.18e-19 88.6
Msa1012710 MtrunA17_Chr3g0134111 24.810 395 253 14 25 390 19 398 1.22e-18 87.8
Msa1012710 MtrunA17_Chr7g0219331 23.864 352 236 10 68 391 157 504 6.75e-18 85.9
Msa1012710 MtrunA17_Chr7g0219241 23.671 414 259 16 67 435 68 469 2.57e-17 84.0
Msa1012710 MtrunA17_Chr2g0323481 22.778 360 238 11 68 392 62 416 4.00e-17 83.2
Msa1012710 MtrunA17_Chr4g0004701 26.178 191 120 5 265 435 49 238 6.13e-17 80.1
Msa1012710 MtrunA17_Chr7g0219291 23.342 407 262 14 68 435 416 811 6.37e-17 83.6
Msa1012710 MtrunA17_Chr7g0219301 24.432 352 234 10 68 391 64 411 1.13e-16 82.8
Msa1012710 MtrunA17_Chr7g0252761 32.374 139 91 3 20 156 20 157 4.20e-16 75.9
Msa1012710 MtrunA17_Chr2g0323421 24.650 357 234 10 68 392 111 464 5.10e-16 80.1
Msa1012710 MtrunA17_Chr8g0378151 29.609 179 123 2 24 201 20 196 1.32e-15 78.6
Msa1012710 MtrunA17_Chr3g0097851 37.079 89 56 0 265 353 26 114 1.37e-14 70.1
Msa1012710 MtrunA17_Chr6g0455341 24.571 350 231 12 68 391 70 412 1.63e-14 75.5
Msa1012710 MtrunA17_Chr1g0165731 28.319 113 76 3 165 276 1 109 5.68e-14 68.2
Msa1012710 MtrunA17_Chr7g0219181 22.356 416 265 15 67 435 67 471 5.81e-14 73.6
Msa1012710 MtrunA17_Chr6g0454761 22.006 309 214 9 150 435 634 938 8.55e-14 73.9
Msa1012710 MtrunA17_Chr6g0454761 23.134 268 172 8 150 391 147 406 7.27e-13 70.9
Msa1012710 MtrunA17_Chr1g0148851 23.077 338 209 12 48 359 39 351 1.22e-13 72.4
Msa1012710 MtrunA17_Chr2g0311411 31.447 159 95 5 13 170 3 148 1.76e-13 67.8
Msa1012710 MtrunA17_Chr7g0273701 33.028 109 70 2 292 397 1 109 1.95e-13 68.2
Msa1012710 MtrunA17_Chr8g0353421 34.906 106 66 2 21 123 14 119 3.47e-13 66.2
Msa1012710 MtrunA17_Chr2g0323471 21.289 357 241 10 67 391 81 429 7.21e-13 70.1
Msa1012710 MtrunA17_Chr6g0471891 26.667 165 91 5 234 396 1 137 1.07e-12 67.4
Msa1012710 MtrunA17_Chr2g0302471 28.947 152 97 5 15 165 4 145 6.47e-12 63.2
Msa1012710 MtrunA17_Chr3g0132831 23.629 237 160 7 48 275 46 270 8.93e-12 66.6
Msa1012710 MtrunA17_Chr8g0339641 21.984 373 244 11 67 397 61 428 1.35e-11 66.2
Msa1012710 MtrunA17_Chr7g0219121 23.588 301 173 12 62 315 61 351 2.39e-11 65.5
Msa1012710 MtrunA17_Chr3g0097831 36.986 73 44 1 24 94 10 82 3.09e-11 59.3
Msa1012710 MtrunA17_Chr2g0298091 26.627 169 118 4 22 188 19 183 5.00e-11 64.3
Msa1012710 MtrunA17_Chr3g0106631 32.051 156 98 6 151 302 2 153 6.84e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012710 AT5G41040.1 73.210 433 110 4 11 437 25 457 0.0 672
Msa1012710 AT5G41040.2 73.210 433 110 4 11 437 9 441 0.0 671
Msa1012710 AT5G63560.1 61.045 421 154 4 20 437 13 426 0.0 525
Msa1012710 AT3G48720.1 55.609 419 182 3 21 437 14 430 5.32e-177 502
Msa1012710 AT5G48930.1 34.174 436 268 7 12 435 2 430 2.91e-81 257
Msa1012710 AT1G03390.1 35.747 442 264 14 13 437 19 457 3.74e-77 248
Msa1012710 AT1G65450.1 35.797 433 254 12 20 436 22 446 1.19e-76 246
Msa1012710 AT1G27620.1 33.724 427 260 9 19 435 12 425 1.76e-73 237
Msa1012710 AT5G17540.1 32.376 383 248 7 20 395 13 391 2.26e-63 211
Msa1012710 AT3G03480.1 34.465 383 233 10 23 395 26 400 1.22e-61 207
Msa1012710 AT1G28680.1 32.028 434 271 12 20 435 13 440 9.63e-57 194
Msa1012710 AT5G57840.1 32.316 393 235 8 20 390 7 390 2.44e-56 192
Msa1012710 AT2G19070.1 30.941 404 237 10 26 396 14 408 7.75e-56 191
Msa1012710 AT2G40230.1 30.324 432 273 11 20 435 9 428 5.87e-53 183
Msa1012710 AT1G28680.2 32.277 347 223 8 20 360 13 353 6.61e-50 174
Msa1012710 AT4G31910.1 29.953 424 260 13 31 423 26 443 1.54e-47 169
Msa1012710 AT1G65450.3 32.292 288 177 7 161 436 1 282 1.15e-44 157
Msa1012710 AT5G07080.1 29.773 440 271 17 19 433 17 443 3.97e-44 160
Msa1012710 AT3G62160.1 29.923 391 236 12 22 397 11 378 1.95e-41 152
Msa1012710 AT2G25150.1 30.543 442 266 14 23 435 20 449 2.13e-40 150
Msa1012710 AT3G47170.1 28.348 448 286 13 19 433 15 460 4.22e-40 149
Msa1012710 AT2G23510.1 28.442 443 274 16 23 436 20 448 2.46e-36 139
Msa1012710 AT1G78990.1 27.295 403 244 14 48 414 46 435 9.23e-34 132
Msa1012710 AT1G24430.1 27.578 417 255 17 35 432 27 415 3.04e-30 122
Msa1012710 AT1G31490.1 27.877 391 248 15 37 410 29 402 2.73e-29 119
Msa1012710 AT1G32910.1 25.068 367 246 11 46 393 44 400 4.99e-29 119
Msa1012710 AT5G16410.1 26.823 384 243 15 37 400 61 426 3.65e-27 113
Msa1012710 AT5G07870.1 29.073 313 195 9 62 356 66 369 6.08e-27 112
Msa1012710 AT5G42830.1 29.191 346 217 10 29 356 22 357 1.26e-26 111
Msa1012710 AT2G39980.1 26.455 378 215 11 68 392 62 429 1.99e-26 111
Msa1012710 AT5G07860.1 27.832 309 194 8 62 356 66 359 6.05e-24 103
Msa1012710 AT5G23940.1 27.586 406 258 14 51 429 43 439 9.57e-24 103
Msa1012710 AT3G29670.1 24.112 394 271 12 48 419 42 429 1.36e-23 103
Msa1012710 AT3G50270.1 26.463 393 250 17 68 434 62 441 2.76e-23 102
Msa1012710 AT5G61160.1 25.352 355 234 12 68 399 64 410 4.88e-23 101
Msa1012710 AT4G15390.1 23.394 436 287 15 23 432 15 429 1.07e-22 100
Msa1012710 AT4G15390.2 23.394 436 287 15 23 432 15 429 1.07e-22 100
Msa1012710 AT3G29635.1 24.289 387 267 11 71 436 70 451 1.36e-22 100
Msa1012710 AT1G24420.2 23.836 365 246 10 79 432 76 419 8.88e-22 97.4
Msa1012710 AT1G24420.1 23.836 365 246 10 79 432 76 419 8.88e-22 97.4
Msa1012710 AT3G30280.1 25.000 428 273 20 23 424 13 418 1.79e-20 93.6
Msa1012710 AT5G47950.1 24.190 401 255 17 48 432 42 409 8.12e-20 91.7
Msa1012710 AT3G50280.1 22.938 388 268 14 68 434 59 436 1.27e-19 91.3
Msa1012710 AT5G38130.1 24.523 367 249 12 71 419 82 438 8.01e-19 89.0
Msa1012710 AT5G23970.1 23.399 406 263 11 37 421 24 402 2.31e-18 87.4
Msa1012710 AT3G29590.1 25.220 341 223 13 76 392 69 401 5.53e-18 86.3
Msa1012710 AT5G47980.1 23.516 438 282 18 23 431 12 425 1.18e-17 85.1
Msa1012710 AT1G65450.2 45.455 110 55 4 20 125 22 130 1.31e-17 80.5
Msa1012710 AT4G15400.1 24.122 427 289 17 23 433 12 419 7.27e-17 82.8
Msa1012710 AT5G07850.1 25.656 343 215 14 20 343 27 348 1.00e-16 82.4
Msa1012710 AT5G67150.1 23.243 370 237 13 68 407 61 413 1.28e-16 82.0
Msa1012710 AT3G29680.1 22.481 387 276 8 68 435 62 443 3.93e-16 80.5
Msa1012710 AT3G50300.1 23.861 373 252 12 68 419 59 420 1.90e-15 78.6
Msa1012710 AT5G39090.1 22.133 375 271 11 78 436 75 444 1.85e-13 72.4
Msa1012710 AT3G50280.2 22.623 305 216 10 142 434 10 306 2.26e-13 71.2
Msa1012710 AT1G03495.1 27.083 288 170 15 68 322 66 346 7.41e-13 70.1
Msa1012710 AT4G29250.1 22.378 429 285 17 34 433 33 442 2.39e-12 68.9
Msa1012710 AT3G50290.1 25.283 265 182 7 137 389 9 269 1.03e-11 65.5
Msa1012710 AT1G03940.1 24.020 408 259 17 68 436 66 461 3.37e-11 65.5
Msa1012710 AT5G39050.1 21.725 313 219 6 150 436 152 464 4.44e-11 65.1
Msa1012710 AT4G13840.1 24.885 217 139 7 68 275 67 268 7.14e-11 64.3

Find 100 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTCCCAAAGGGTATTT+TGG 0.104046 7_1:-18145061 Msa1012710:CDS
GTCTGGACCGGTTTCCTTGC+CGG 0.230469 7_1:-18144795 Msa1012710:CDS
CTTCAATGTCAGCAAATTCT+TGG 0.238280 7_1:+18145332 None:intergenic
AGAAGCTTTGTTTCTTGTTC+TGG 0.240151 7_1:+18145118 None:intergenic
GAAAATTCTAATTATCAAAA+TGG 0.257291 7_1:-18146852 Msa1012710:CDS
TGCTTCACACAAATATGATA+TGG 0.268225 7_1:+18147042 None:intergenic
CCAAGATTTAATGCAGATAT+AGG 0.271308 7_1:-18144681 Msa1012710:exon
CATCATTTCATCTTCATATA+AGG 0.279635 7_1:+18145291 None:intergenic
GTTCATTATTACCCTCTTGC+TGG 0.281316 7_1:-18146627 Msa1012710:CDS
AAATACCCTTTGGGAAGTTT+TGG 0.290579 7_1:+18145064 None:intergenic
CACTGTATGTTTGATGGAAT+TGG 0.294988 7_1:-18145475 Msa1012710:CDS
CCGTTTCATACCACCGATTT+CGG 0.298332 7_1:-18144836 Msa1012710:CDS
AATTGTTCAATGGAAGAAAT+TGG 0.299341 7_1:-18146525 Msa1012710:CDS
CCTTTCTTTGTTTCTTCAGA+TGG 0.304433 7_1:+18146780 None:intergenic
TCTTGACCGAAGCATATTAA+AGG 0.311197 7_1:-18145386 Msa1012710:CDS
TGAATAACCTTCACCGTATA+CGG 0.313318 7_1:+18144977 None:intergenic
GAACAAGCCCTTTCCGTATA+CGG 0.314033 7_1:-18144990 Msa1012710:CDS
AACAAGAGCTAGGCCATCTT+TGG 0.319090 7_1:-18144894 Msa1012710:CDS
CAAGTGTTGGTTCACTTGTT+AGG 0.323483 7_1:+18146808 None:intergenic
AGTGCTGTTTATGAATTTAT+TGG 0.329556 7_1:-18144582 Msa1012710:three_prime_UTR
TGGTGCAAATGCTCTATCTT+CGG 0.344041 7_1:+18145352 None:intergenic
TCCATTCCCAAAATACCCTT+TGG 0.350876 7_1:+18145054 None:intergenic
AGAAGCATTAATGTGCTTCT+TGG 0.357845 7_1:-18144731 Msa1012710:CDS
TATTCTTCAGATGCCTCCTT+TGG 0.367285 7_1:-18146436 Msa1012710:CDS
ATATTTGTGTGAAGCAATTC+AGG 0.371213 7_1:-18147035 Msa1012710:intron
GGTGCAAATGCTCTATCTTC+GGG 0.375653 7_1:+18145353 None:intergenic
CGATTTCGGTTGGGGAGAAC+CGG 0.379270 7_1:-18144822 Msa1012710:CDS
GAATGCTTGTGAAGTGATTA+AGG 0.383599 7_1:-18146670 Msa1012710:CDS
CCTATATCTGCATTAAATCT+TGG 0.386363 7_1:+18144681 None:intergenic
AAGTGCTTTCAGCATTTGTT+TGG 0.399533 7_1:-18145171 Msa1012710:CDS
TCCTTCTCCGGCAAGGAAAC+CGG 0.400213 7_1:+18144788 None:intergenic
GATGCCTCCTTTGGTTGCTC+AGG 0.401248 7_1:-18146427 Msa1012710:intron
TCATACCACCGATTTCGGTT+GGG 0.412037 7_1:-18144831 Msa1012710:CDS
CGGTTCTCCCCAACCGAAAT+CGG 0.413358 7_1:+18144823 None:intergenic
TGGGGAGAACCGGTTCTGTC+TGG 0.419323 7_1:-18144812 Msa1012710:CDS
TTCATATAAGGTACTAGTGT+TGG 0.419653 7_1:+18145303 None:intergenic
ATGAATCACTGTATGTTTGA+TGG 0.425031 7_1:-18145481 Msa1012710:CDS
CCATTCCCAAAATACCCTTT+GGG 0.427070 7_1:+18145055 None:intergenic
TGCGGACCTTTAATATGCTT+CGG 0.427426 7_1:+18145380 None:intergenic
AATATGCTTCGGTCAAGAAC+TGG 0.431411 7_1:+18145391 None:intergenic
AACAAAATCACTTCCTTCTC+CGG 0.435908 7_1:+18144776 None:intergenic
CATACCACCGATTTCGGTTG+GGG 0.437822 7_1:-18144830 Msa1012710:CDS
TCCAAGGACTCTTGGTATGT+TGG 0.438373 7_1:-18146484 Msa1012710:CDS
TTCATACCACCGATTTCGGT+TGG 0.441418 7_1:-18144832 Msa1012710:CDS
TTCATTATTACCCTCTTGCT+GGG 0.443863 7_1:-18146626 Msa1012710:CDS
TTCTTTGTTTCTTCAGATGG+TGG 0.446811 7_1:+18146783 None:intergenic
GCTTCACACAAATATGATAT+GGG 0.459751 7_1:+18147043 None:intergenic
AAACCTGATCCAAGGACTCT+TGG 0.464374 7_1:-18146492 Msa1012710:CDS
ACAAATGCTGTTTGTAAAGC+AGG 0.466739 7_1:-18145022 Msa1012710:CDS
ATACCAAGAGTCCTTGGATC+AGG 0.478213 7_1:+18146489 None:intergenic
ACCAACATACCAAGAGTCCT+TGG 0.479611 7_1:+18146483 None:intergenic
GGCTGAAGCTAATTGTTCAA+TGG 0.480046 7_1:-18146535 Msa1012710:CDS
TCAGATGGTGGAACAAGTGT+TGG 0.489688 7_1:+18146795 None:intergenic
ACCGGTTTCCTTGCCGGAGA+AGG 0.494266 7_1:-18144789 Msa1012710:CDS
CTATGGAGTTTGTTAACTCA+TGG 0.498485 7_1:-18145450 Msa1012710:CDS
TTGGTAGTAAGCAATAACTA+AGG 0.501457 7_1:-18144563 Msa1012710:three_prime_UTR
AAAACCTCCACATTTGAACT+TGG 0.504811 7_1:+18145519 None:intergenic
CTCAGAGGGTAAACTGATTG+TGG 0.510531 7_1:-18146589 Msa1012710:CDS
AAGATCTTCATGACAGGAGC+AGG 0.513671 7_1:+18144704 None:intergenic
ACCTTCACCGTATACGGAAA+GGG 0.514785 7_1:+18144983 None:intergenic
TGAAGAATATGCTTAGCATC+AGG 0.522838 7_1:+18146450 None:intergenic
TATGGAGTTTGTTAACTCAT+GGG 0.537855 7_1:-18145449 Msa1012710:CDS
TTGAACCAAAACTTCCCAAA+GGG 0.539116 7_1:-18145069 Msa1012710:CDS
TCCTCTCTTGACCATGTGAA+AGG 0.539507 7_1:+18144753 None:intergenic
GTTTGATGGAATTGGAGCTA+TGG 0.548532 7_1:-18145467 Msa1012710:CDS
TAATCAAGAAGTGTTTGAGA+TGG 0.549573 7_1:-18146874 Msa1012710:exon
GAAACCGGTCCAGACAGAAC+CGG 0.551440 7_1:+18144803 None:intergenic
CCGAAATCGGTGGTATGAAA+CGG 0.552192 7_1:+18144836 None:intergenic
AAAAGTGTACAAGCCAAAGA+TGG 0.555885 7_1:+18144881 None:intergenic
AGAACCGGTTCTGTCTGGAC+CGG 0.557075 7_1:-18144807 Msa1012710:CDS
GCCCTTTCCGTATACGGTGA+AGG 0.557341 7_1:-18144984 Msa1012710:CDS
TACTGATAGTTACATGAGAT+CGG 0.559146 7_1:-18144936 Msa1012710:CDS
TATTCAAGATGCAATCAAGA+TGG 0.561804 7_1:-18144960 Msa1012710:CDS
CCATCTGAAGAAACAAAGAA+AGG 0.565357 7_1:-18146780 Msa1012710:CDS
AGAACTGGAGGGACGGAGAG+TGG 0.571956 7_1:+18145406 None:intergenic
TCTTGGAAGATCTTCATGAC+AGG 0.573252 7_1:+18144698 None:intergenic
TCCTTTCACATGGTCAAGAG+AGG 0.581268 7_1:-18144754 Msa1012710:CDS
AAACTGATTGTGGATTGTAC+AGG 0.586136 7_1:-18146579 Msa1012710:CDS
AGATTAAGTATAAGCTCAGA+GGG 0.587672 7_1:-18146603 Msa1012710:CDS
CAGCTGACCAAGTTCAAATG+TGG 0.590914 7_1:-18145526 Msa1012710:CDS
AACCTTCACCGTATACGGAA+AGG 0.593644 7_1:+18144982 None:intergenic
ATGGAGTTTGTTAACTCATG+GGG 0.595449 7_1:-18145448 Msa1012710:CDS
GTGCAAATGCTCTATCTTCG+GGG 0.597277 7_1:+18145354 None:intergenic
AATCACTTCCTTCTCCGGCA+AGG 0.599797 7_1:+18144781 None:intergenic
CTGACCAAGTTCAAATGTGG+AGG 0.605830 7_1:-18145523 Msa1012710:CDS
TTTGAACCAAAACTTCCCAA+AGG 0.608712 7_1:-18145070 Msa1012710:CDS
ATACTTAATCTCCCAGCAAG+AGG 0.610225 7_1:+18146615 None:intergenic
TGCAAATGCTCTATCTTCGG+GGG 0.613923 7_1:+18145355 None:intergenic
ATGCTTCGGTCAAGAACTGG+AGG 0.620290 7_1:+18145394 None:intergenic
ATATTACAAAACCTGATCCA+AGG 0.621561 7_1:-18146500 Msa1012710:CDS
TCGGTCAAGAACTGGAGGGA+CGG 0.623713 7_1:+18145399 None:intergenic
CATACCTGAGCAACCAAAGG+AGG 0.626730 7_1:+18146423 None:intergenic
TACTTAATCTCCCAGCAAGA+GGG 0.629161 7_1:+18146616 None:intergenic
AAACATACCTGAGCAACCAA+AGG 0.647608 7_1:+18146420 None:intergenic
GAGATTAAGTATAAGCTCAG+AGG 0.659227 7_1:-18146604 Msa1012710:CDS
TCATGGGGAGAAATAGCAAG+AGG 0.661263 7_1:-18145433 Msa1012710:CDS
TTCTCCCCAACCGAAATCGG+TGG 0.671335 7_1:+18144826 None:intergenic
ATTGTGGATTGTACAGGAGA+AGG 0.683782 7_1:-18146573 Msa1012710:CDS
TGCTTCGGTCAAGAACTGGA+GGG 0.700549 7_1:+18145395 None:intergenic
AAAGCTTTAGAAGATGATGG+CGG 0.739373 7_1:-18145220 Msa1012710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTAATTTTTTTAGTTA+AGG - chr7_1:18145542-18145561 Msa1012710:intron 10.0%
!!! TGTTTAATTTTTTTAGTTAA+GGG - chr7_1:18145543-18145562 Msa1012710:intron 10.0%
!!! TTGTGTTATTTTTTATTATA+TGG - chr7_1:18146992-18147011 Msa1012710:intron 10.0%
!! GAAAATTCTAATTATCAAAA+TGG - chr7_1:18144774-18144793 Msa1012710:CDS 15.0%
!! AAAAATATTTAGTACATGTT+TGG + chr7_1:18145669-18145688 None:intergenic 15.0%
!!! CTATTTGAGAAATTTTAAAT+AGG + chr7_1:18145735-18145754 None:intergenic 15.0%
!! AATGTTATGTTTGAAGATTA+AGG + chr7_1:18144688-18144707 None:intergenic 20.0%
!!! TTTTTGTTTGTTTGTAAAAC+AGG - chr7_1:18144724-18144743 Msa1012710:CDS 20.0%
!! CCAAATTATTTAAGAGTTTA+GGG + chr7_1:18145433-18145452 None:intergenic 20.0%
!! TCCAAATTATTTAAGAGTTT+AGG + chr7_1:18145434-18145453 None:intergenic 20.0%
!!! CTCTTAAATAATTTGGAATT+TGG - chr7_1:18145437-18145456 Msa1012710:CDS 20.0%
!! ATTTGTGTATGATAAACATA+AGG - chr7_1:18145895-18145914 Msa1012710:intron 20.0%
!! TTTGATTATTGACATAGAAA+CGG + chr7_1:18146013-18146032 None:intergenic 20.0%
! AATTGTTCAATGGAAGAAAT+TGG - chr7_1:18145101-18145120 Msa1012710:CDS 25.0%
! ACATGATTCAATGTATTCAT+AGG - chr7_1:18145335-18145354 Msa1012710:CDS 25.0%
! CCCTAAACTCTTAAATAATT+TGG - chr7_1:18145430-18145449 Msa1012710:CDS 25.0%
! ACTTCAGTGACAAAAAATAA+AGG + chr7_1:18145780-18145799 None:intergenic 25.0%
!! TACTTTTGAACTTAGACATT+TGG + chr7_1:18145809-18145828 None:intergenic 25.0%
! CATCATTTCATCTTCATATA+AGG + chr7_1:18146338-18146357 None:intergenic 25.0%
!!! TTCAATTCTTTTAGTTTCTC+AGG + chr7_1:18146382-18146401 None:intergenic 25.0%
!!! AAAAAAGCTTTAGAAGATGA+TGG - chr7_1:18146403-18146422 Msa1012710:intron 25.0%
!!! AGTGCTGTTTATGAATTTAT+TGG - chr7_1:18147044-18147063 Msa1012710:five_prime_UTR 25.0%
GCTTCACACAAATATGATAT+GGG + chr7_1:18144586-18144605 None:intergenic 30.0%
TGCTTCACACAAATATGATA+TGG + chr7_1:18144587-18144606 None:intergenic 30.0%
ATATTTGTGTGAAGCAATTC+AGG - chr7_1:18144591-18144610 Msa1012710:three_prime_UTR 30.0%
!! TAATCAAGAAGTGTTTGAGA+TGG - chr7_1:18144752-18144771 Msa1012710:CDS 30.0%
!!! TGTTTTGATCAAGGTTTGAT+AGG + chr7_1:18144881-18144900 None:intergenic 30.0%
!!! TTACAGCAATGTTTTGATCA+AGG + chr7_1:18144890-18144909 None:intergenic 30.0%
TGCTTCAAAAATGAAGAGAA+AGG - chr7_1:18144927-18144946 Msa1012710:CDS 30.0%
AGATTAAGTATAAGCTCAGA+GGG - chr7_1:18145023-18145042 Msa1012710:CDS 30.0%
ATATTACAAAACCTGATCCA+AGG - chr7_1:18145126-18145145 Msa1012710:CDS 30.0%
!!! GTTACTAGTCTTTTTGTAGT+TGG - chr7_1:18145230-18145249 Msa1012710:CDS 30.0%
TCTCAAATTATTATCCGTGT+CGG + chr7_1:18145310-18145329 None:intergenic 30.0%
TTCAGAGGTTACTTGTAATT+TGG - chr7_1:18145405-18145424 Msa1012710:CDS 30.0%
TCAGAGGTTACTTGTAATTT+GGG - chr7_1:18145406-18145425 Msa1012710:CDS 30.0%
CATACACAAATTCCTATGAA+GGG + chr7_1:18145886-18145905 None:intergenic 30.0%
TCATACACAAATTCCTATGA+AGG + chr7_1:18145887-18145906 None:intergenic 30.0%
TGTCTCACAAGTATCATAAA+AGG - chr7_1:18145931-18145950 Msa1012710:intron 30.0%
ATGAATCACTGTATGTTTGA+TGG - chr7_1:18146145-18146164 Msa1012710:intron 30.0%
!! TATGGAGTTTGTTAACTCAT+GGG - chr7_1:18146177-18146196 Msa1012710:intron 30.0%
! TTCATATAAGGTACTAGTGT+TGG + chr7_1:18146326-18146345 None:intergenic 30.0%
TATTCAAGATGCAATCAAGA+TGG - chr7_1:18146666-18146685 Msa1012710:CDS 30.0%
TACTGATAGTTACATGAGAT+CGG - chr7_1:18146690-18146709 Msa1012710:CDS 30.0%
CCTATATCTGCATTAAATCT+TGG + chr7_1:18146948-18146967 None:intergenic 30.0%
CCAAGATTTAATGCAGATAT+AGG - chr7_1:18146945-18146964 Msa1012710:intron 30.0%
! TTGGTAGTAAGCAATAACTA+AGG - chr7_1:18147063-18147082 Msa1012710:five_prime_UTR 30.0%
GCAATGTTGAAAATGTCACA+TGG + chr7_1:18144648-18144667 None:intergenic 35.0%
! TTCTTTGTTTCTTCAGATGG+TGG + chr7_1:18144846-18144865 None:intergenic 35.0%
! CCTTTCTTTGTTTCTTCAGA+TGG + chr7_1:18144849-18144868 None:intergenic 35.0%
CCATCTGAAGAAACAAAGAA+AGG - chr7_1:18144846-18144865 Msa1012710:CDS 35.0%
GAATGCTTGTGAAGTGATTA+AGG - chr7_1:18144956-18144975 Msa1012710:CDS 35.0%
TTCATTATTACCCTCTTGCT+GGG - chr7_1:18145000-18145019 Msa1012710:CDS 35.0%
GAGATTAAGTATAAGCTCAG+AGG - chr7_1:18145022-18145041 Msa1012710:CDS 35.0%
! AAACTGATTGTGGATTGTAC+AGG - chr7_1:18145047-18145066 Msa1012710:CDS 35.0%
TGAAGAATATGCTTAGCATC+AGG + chr7_1:18145179-18145198 None:intergenic 35.0%
!! TAGTTACTTGCTATGAACCA+CGG - chr7_1:18145267-18145286 Msa1012710:CDS 35.0%
TCAAGTGTATCTTTGATGAG+CGG - chr7_1:18145572-18145591 Msa1012710:intron 35.0%
AAAACCTCCACATTTGAACT+TGG + chr7_1:18146110-18146129 None:intergenic 35.0%
! AAATGTGGAGGTTTTTCTCT+TGG - chr7_1:18146115-18146134 Msa1012710:intron 35.0%
CACTGTATGTTTGATGGAAT+TGG - chr7_1:18146151-18146170 Msa1012710:intron 35.0%
!! CTATGGAGTTTGTTAACTCA+TGG - chr7_1:18146176-18146195 Msa1012710:intron 35.0%
!! ATGGAGTTTGTTAACTCATG+GGG - chr7_1:18146178-18146197 Msa1012710:intron 35.0%
TCTTGACCGAAGCATATTAA+AGG - chr7_1:18146240-18146259 Msa1012710:intron 35.0%
CTTCAATGTCAGCAAATTCT+TGG + chr7_1:18146297-18146316 None:intergenic 35.0%
!! AAAGCTTTAGAAGATGATGG+CGG - chr7_1:18146406-18146425 Msa1012710:intron 35.0%
AAGTGCTTTCAGCATTTGTT+TGG - chr7_1:18146455-18146474 Msa1012710:CDS 35.0%
!! AGAAGCTTTGTTTCTTGTTC+TGG + chr7_1:18146511-18146530 None:intergenic 35.0%
!!! AAGCTTCTTTTTGCTGTTGA+TGG - chr7_1:18146523-18146542 Msa1012710:CDS 35.0%
!!! TTCTTTTTGCTGTTGATGGA+AGG - chr7_1:18146527-18146546 Msa1012710:CDS 35.0%
!!! TCTTTTTGCTGTTGATGGAA+GGG - chr7_1:18146528-18146547 Msa1012710:CDS 35.0%
TTTGAACCAAAACTTCCCAA+AGG - chr7_1:18146556-18146575 Msa1012710:CDS 35.0%
TTGAACCAAAACTTCCCAAA+GGG - chr7_1:18146557-18146576 Msa1012710:CDS 35.0%
!! AAATACCCTTTGGGAAGTTT+TGG + chr7_1:18146565-18146584 None:intergenic 35.0%
!!! AAACTTCCCAAAGGGTATTT+TGG - chr7_1:18146565-18146584 Msa1012710:CDS 35.0%
!!! AACTTCCCAAAGGGTATTTT+GGG - chr7_1:18146566-18146585 Msa1012710:CDS 35.0%
! ACAAATGCTGTTTGTAAAGC+AGG - chr7_1:18146604-18146623 Msa1012710:CDS 35.0%
TGAATAACCTTCACCGTATA+CGG + chr7_1:18146652-18146671 None:intergenic 35.0%
!! ATCGGCTATCGATTATTTTG+AGG - chr7_1:18146708-18146727 Msa1012710:CDS 35.0%
!!! ATTTTGAGGTAACAAGAGCT+AGG - chr7_1:18146722-18146741 Msa1012710:CDS 35.0%
! AAAAGTGTACAAGCCAAAGA+TGG + chr7_1:18146748-18146767 None:intergenic 35.0%
! GTACACTTTTGATCACAACT+TGG - chr7_1:18146758-18146777 Msa1012710:CDS 35.0%
! TTTTGATCACAACTTGGTCT+AGG - chr7_1:18146764-18146783 Msa1012710:CDS 35.0%
AACAAAATCACTTCCTTCTC+CGG + chr7_1:18146853-18146872 None:intergenic 35.0%
! GTGATTTTGTTCCTTTCACA+TGG - chr7_1:18146862-18146881 Msa1012710:exon 35.0%
!! AGAAGCATTAATGTGCTTCT+TGG - chr7_1:18146895-18146914 Msa1012710:intron 35.0%
!! CAAGTGTTGGTTCACTTGTT+AGG + chr7_1:18144821-18144840 None:intergenic 40.0%
GTTCATTATTACCCTCTTGC+TGG - chr7_1:18144999-18145018 Msa1012710:CDS 40.0%
TACTTAATCTCCCAGCAAGA+GGG + chr7_1:18145013-18145032 None:intergenic 40.0%
ATACTTAATCTCCCAGCAAG+AGG + chr7_1:18145014-18145033 None:intergenic 40.0%
! ATTGTGGATTGTACAGGAGA+AGG - chr7_1:18145053-18145072 Msa1012710:CDS 40.0%
!!! AGAAGGTGCTCTTTTTGTTG+AGG - chr7_1:18145070-18145089 Msa1012710:CDS 40.0%
GGCTGAAGCTAATTGTTCAA+TGG - chr7_1:18145091-18145110 Msa1012710:CDS 40.0%
TATTCTTCAGATGCCTCCTT+TGG - chr7_1:18145190-18145209 Msa1012710:CDS 40.0%
AAACATACCTGAGCAACCAA+AGG + chr7_1:18145209-18145228 None:intergenic 40.0%
! TGTATTCATAGGTGTCGTGT+CGG - chr7_1:18145346-18145365 Msa1012710:CDS 40.0%
!! TACAAGTAACCTCTGAAGCA+TGG + chr7_1:18145402-18145421 None:intergenic 40.0%
GTTTGATGGAATTGGAGCTA+TGG - chr7_1:18146159-18146178 Msa1012710:intron 40.0%
AATATGCTTCGGTCAAGAAC+TGG + chr7_1:18146238-18146257 None:intergenic 40.0%
TGCGGACCTTTAATATGCTT+CGG + chr7_1:18146249-18146268 None:intergenic 40.0%
TGGTGCAAATGCTCTATCTT+CGG + chr7_1:18146277-18146296 None:intergenic 40.0%
CCATTCCCAAAATACCCTTT+GGG + chr7_1:18146574-18146593 None:intergenic 40.0%
TCCATTCCCAAAATACCCTT+TGG + chr7_1:18146575-18146594 None:intergenic 40.0%
TCTTGGAAGATCTTCATGAC+AGG + chr7_1:18146931-18146950 None:intergenic 40.0%
!! TCAGATGGTGGAACAAGTGT+TGG + chr7_1:18144834-18144853 None:intergenic 45.0%
CTCAGAGGGTAAACTGATTG+TGG - chr7_1:18145037-18145056 Msa1012710:CDS 45.0%
AAACCTGATCCAAGGACTCT+TGG - chr7_1:18145134-18145153 Msa1012710:CDS 45.0%
ATACCAAGAGTCCTTGGATC+AGG + chr7_1:18145140-18145159 None:intergenic 45.0%
TCCAAGGACTCTTGGTATGT+TGG - chr7_1:18145142-18145161 Msa1012710:CDS 45.0%
ACCAACATACCAAGAGTCCT+TGG + chr7_1:18145146-18145165 None:intergenic 45.0%
! TCCTCATATTTGAGGTGTCC+CGG + chr7_1:18145375-18145394 None:intergenic 45.0%
ATGGACGCTCCTCATATTTG+AGG + chr7_1:18145383-18145402 None:intergenic 45.0%
GCATTTCTCAAGCCCTTCAT+AGG - chr7_1:18145871-18145890 Msa1012710:intron 45.0%
CAGCTGACCAAGTTCAAATG+TGG - chr7_1:18146100-18146119 Msa1012710:intron 45.0%
CTGACCAAGTTCAAATGTGG+AGG - chr7_1:18146103-18146122 Msa1012710:intron 45.0%
TCATGGGGAGAAATAGCAAG+AGG - chr7_1:18146193-18146212 Msa1012710:intron 45.0%
TGCAAATGCTCTATCTTCGG+GGG + chr7_1:18146274-18146293 None:intergenic 45.0%
GTGCAAATGCTCTATCTTCG+GGG + chr7_1:18146275-18146294 None:intergenic 45.0%
GGTGCAAATGCTCTATCTTC+GGG + chr7_1:18146276-18146295 None:intergenic 45.0%
!!! CCCAAAGGGTATTTTGGGAA+TGG - chr7_1:18146571-18146590 Msa1012710:CDS 45.0%
GAACAAGCCCTTTCCGTATA+CGG - chr7_1:18146636-18146655 Msa1012710:CDS 45.0%
ACCTTCACCGTATACGGAAA+GGG + chr7_1:18146646-18146665 None:intergenic 45.0%
AACCTTCACCGTATACGGAA+AGG + chr7_1:18146647-18146666 None:intergenic 45.0%
AACAAGAGCTAGGCCATCTT+TGG - chr7_1:18146732-18146751 Msa1012710:CDS 45.0%
CCGAAATCGGTGGTATGAAA+CGG + chr7_1:18146793-18146812 None:intergenic 45.0%
!! CCGTTTCATACCACCGATTT+CGG - chr7_1:18146790-18146809 Msa1012710:CDS 45.0%
!! TTCATACCACCGATTTCGGT+TGG - chr7_1:18146794-18146813 Msa1012710:CDS 45.0%
!! TCATACCACCGATTTCGGTT+GGG - chr7_1:18146795-18146814 Msa1012710:CDS 45.0%
TCCTTTCACATGGTCAAGAG+AGG - chr7_1:18146872-18146891 Msa1012710:exon 45.0%
TCCTCTCTTGACCATGTGAA+AGG + chr7_1:18146876-18146895 None:intergenic 45.0%
AAGATCTTCATGACAGGAGC+AGG + chr7_1:18146925-18146944 None:intergenic 45.0%
CATACCTGAGCAACCAAAGG+AGG + chr7_1:18145206-18145225 None:intergenic 50.0%
TTGCTATGAACCACGGACAC+CGG - chr7_1:18145274-18145293 Msa1012710:CDS 50.0%
TCCGGGACACCTCAAATATG+AGG - chr7_1:18145371-18145390 Msa1012710:CDS 50.0%
TGCTTCGGTCAAGAACTGGA+GGG + chr7_1:18146234-18146253 None:intergenic 50.0%
ATGCTTCGGTCAAGAACTGG+AGG + chr7_1:18146235-18146254 None:intergenic 50.0%
!! CATACCACCGATTTCGGTTG+GGG - chr7_1:18146796-18146815 Msa1012710:CDS 50.0%
AATCACTTCCTTCTCCGGCA+AGG + chr7_1:18146848-18146867 None:intergenic 50.0%
GATGCCTCCTTTGGTTGCTC+AGG - chr7_1:18145199-18145218 Msa1012710:CDS 55.0%
! ATAGGTGTCGTGTCGGTGTC+CGG - chr7_1:18145353-18145372 Msa1012710:CDS 55.0%
TCGGTCAAGAACTGGAGGGA+CGG + chr7_1:18146230-18146249 None:intergenic 55.0%
GCTCTATCTTCGGGGGATTG+CGG + chr7_1:18146267-18146286 None:intergenic 55.0%
GCCCTTTCCGTATACGGTGA+AGG - chr7_1:18146642-18146661 Msa1012710:CDS 55.0%
TTCTCCCCAACCGAAATCGG+TGG + chr7_1:18146803-18146822 None:intergenic 55.0%
CGGTTCTCCCCAACCGAAAT+CGG + chr7_1:18146806-18146825 None:intergenic 55.0%
CGATTTCGGTTGGGGAGAAC+CGG - chr7_1:18146804-18146823 Msa1012710:CDS 55.0%
! AGAACCGGTTCTGTCTGGAC+CGG - chr7_1:18146819-18146838 Msa1012710:CDS 55.0%
GAAACCGGTCCAGACAGAAC+CGG + chr7_1:18146826-18146845 None:intergenic 55.0%
TCCTTCTCCGGCAAGGAAAC+CGG + chr7_1:18146841-18146860 None:intergenic 55.0%
! TAGGTGTCGTGTCGGTGTCC+GGG - chr7_1:18145354-18145373 Msa1012710:CDS 60.0%
!! GAGGAGCGTCCATGCTTCAG+AGG - chr7_1:18145390-18145409 Msa1012710:CDS 60.0%
AGAACTGGAGGGACGGAGAG+TGG + chr7_1:18146223-18146242 None:intergenic 60.0%
! TGGGGAGAACCGGTTCTGTC+TGG - chr7_1:18146814-18146833 Msa1012710:CDS 60.0%
! GTCTGGACCGGTTTCCTTGC+CGG - chr7_1:18146831-18146850 Msa1012710:CDS 60.0%
! ACCGGTTTCCTTGCCGGAGA+AGG - chr7_1:18146837-18146856 Msa1012710:CDS 60.0%
CCTGTCGTGTCCGGTGTCCG+TGG + chr7_1:18145287-18145306 None:intergenic 70.0%
CCACGGACACCGGACACGAC+AGG - chr7_1:18145284-18145303 Msa1012710:CDS 70.0%
! CCGTGTCGGCCTGTCGTGTC+CGG + chr7_1:18145296-18145315 None:intergenic 70.0%
CCGGACACGACAGGCCGACA+CGG - chr7_1:18145293-18145312 Msa1012710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 18144552 18147096 18144552 ID=Msa1012710;Name=Msa1012710
chr7_1 mRNA 18144552 18147096 18144552 ID=Msa1012710-mRNA-1;Parent=Msa1012710;Name=Msa1012710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|0.5|0.33|3|130|437
chr7_1 exon 18144552 18145545 18144552 ID=Msa1012710-mRNA-1:exon:4538;Parent=Msa1012710-mRNA-1
chr7_1 exon 18146428 18146902 18146428 ID=Msa1012710-mRNA-1:exon:4537;Parent=Msa1012710-mRNA-1
chr7_1 exon 18147036 18147096 18147036 ID=Msa1012710-mRNA-1:exon:4536;Parent=Msa1012710-mRNA-1
chr7_1 five_prime_UTR 18147036 18147096 18147036 ID=Msa1012710-mRNA-1:five_prime_utr;Parent=Msa1012710-mRNA-1
chr7_1 five_prime_UTR 18146878 18146902 18146878 ID=Msa1012710-mRNA-1:five_prime_utr;Parent=Msa1012710-mRNA-1
chr7_1 CDS 18146428 18146877 18146428 ID=Msa1012710-mRNA-1:cds;Parent=Msa1012710-mRNA-1
chr7_1 CDS 18144682 18145545 18144682 ID=Msa1012710-mRNA-1:cds;Parent=Msa1012710-mRNA-1
chr7_1 three_prime_UTR 18144552 18144681 18144552 ID=Msa1012710-mRNA-1:three_prime_utr;Parent=Msa1012710-mRNA-1
Gene Sequence

>Msa1012710

ATGGAAAATTCTAATTATCAAAATGGCTTCAAACAAATTAATGTAAACCTAACAAGTGAACCAACACTTGTTCCACCATCTGAAGAAACAAAGAAAGGAATGTATTTCCTATCAAACCTTGATCAAAACATTGCTGTAATTGTAAGAACTGTTTATTGCTTCAAAAATGAAGAGAAAGGAAATGAGAATGCTTGTGAAGTGATTAAGGATGCATTGAAGAATGTTCTTGTTCATTATTACCCTCTTGCTGGGAGATTAAGTATAAGCTCAGAGGGTAAACTGATTGTGGATTGTACAGGAGAAGGTGCTCTTTTTGTTGAGGCTGAAGCTAATTGTTCAATGGAAGAAATTGGTGATATTACAAAACCTGATCCAAGGACTCTTGGTATGTTGGTTTATGATATTCCTGATGCTAAGCATATTCTTCAGATGCCTCCTTTGGTTGCTCAGCTGACCAAGTTCAAATGTGGAGGTTTTTCTCTTGGACTATGTATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGAGAAATAGCAAGAGGTTTACCACTCTCCGTCCCTCCAGTTCTTGACCGAAGCATATTAAAGGTCCGCAATCCCCCGAAGATAGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAATCCAACACTAGTACCTTATATGAAGATGAAATGATGTATAGATCATTCTGTTTCGATCCTGAGAAACTAAAAGAATTGAAGAAAAAAGCTTTAGAAGATGATGGCGGTGTTCTTGAATCTTGCACAACATTTGAAGTGCTTTCAGCATTTGTTTGGATAGCTAGAACAAAAGCACTGAAAATGTTACCAGAACAAGAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCTAAATTTGAACCAAAACTTCCCAAAGGGTATTTTGGGAATGGAATTATACTAACAAATGCTGTTTGTAAAGCAGGTGAAATTACGAACAAGCCCTTTCCGTATACGGTGAAGGTTATTCAAGATGCAATCAAGATGGTTACTGATAGTTACATGAGATCGGCTATCGATTATTTTGAGGTAACAAGAGCTAGGCCATCTTTGGCTTGTACACTTTTGATCACAACTTGGTCTAGGCTTCCGTTTCATACCACCGATTTCGGTTGGGGAGAACCGGTTCTGTCTGGACCGGTTTCCTTGCCGGAGAAGGAAGTGATTTTGTTCCTTTCACATGGTCAAGAGAGGAGAAGCATTAATGTGCTTCTTGGTTTGCCTGCTCCTGTCATGAAGATCTTCCAAGATTTAATGCAGATATAG
Protein sequence

>Msa1012710

MENSNYQNGFKQINVNLTSEPTLVPPSEETKKGMYFLSNLDQNIAVIVRTVYCFKNEEKGNENACEVIKDALKNVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPRTLGMLVYDIPDAKHILQMPPLVAQLTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGEIARGLPLSVPPVLDRSILKVRNPPKIEHLHQEFADIEDKSNTSTLYEDEMMYRSFCFDPEKLKELKKKALEDDGGVLESCTTFEVLSAFVWIARTKALKMLPEQETKLLFAVDGRAKFEPKLPKGYFGNGIILTNAVCKAGEITNKPFPYTVKVIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLPFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRSINVLLGLPAPVMKIFQDLMQI*