Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016310 | sp|O82081|UCC1_ARATH | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 3.03e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016310 | Msa0083340 | 0.829219 | 5.819012e-55 | -8.615850e-47 |
| Msa0016310 | Msa0129700 | 0.952448 | 2.369464e-110 | -8.615850e-47 |
| Msa0016310 | Msa0226310 | 0.810127 | 1.345457e-50 | -8.615850e-47 |
| Msa0016310 | Msa0297910 | 0.803206 | 3.893960e-49 | -8.615850e-47 |
| Msa0016310 | Msa0304570 | 0.811942 | 5.438132e-51 | -8.615850e-47 |
| Msa0016310 | Msa0304680 | 0.808150 | 3.566903e-50 | -8.615850e-47 |
| Msa0016310 | Msa0748670 | 0.800748 | 1.245779e-48 | -8.615850e-47 |
| Msa0016310 | Msa0931620 | 0.811583 | 6.512574e-51 | -8.615850e-47 |
| Msa0016310 | Msa1012710 | 0.819524 | 1.110398e-52 | -8.615850e-47 |
| Msa0016310 | Msa1012800 | 0.868532 | 6.087012e-66 | -8.615850e-47 |
| Msa0016310 | Msa1054250 | 0.802731 | 4.882517e-49 | -8.615850e-47 |
| Msa0016310 | Msa1094410 | 0.819404 | 1.182518e-52 | -8.615850e-47 |
| Msa0016310 | Msa1131270 | 0.824016 | 1.014038e-53 | -8.615850e-47 |
| Msa0016310 | Msa1203440 | 0.813983 | 1.941799e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016310 | MtrunA17_Chr1g0196801 | 88.333 | 180 | 15 | 2 | 1 | 175 | 1 | 179 | 3.62e-106 | 301 |
| Msa0016310 | MtrunA17_Chr2g0323021 | 38.519 | 135 | 75 | 4 | 3 | 136 | 9 | 136 | 2.15e-28 | 105 |
| Msa0016310 | MtrunA17_Chr3g0132441 | 42.105 | 114 | 63 | 1 | 5 | 118 | 11 | 121 | 2.44e-28 | 103 |
| Msa0016310 | MtrunA17_Chr8g0335571 | 41.176 | 119 | 64 | 2 | 1 | 117 | 6 | 120 | 7.76e-28 | 103 |
| Msa0016310 | MtrunA17_Chr3g0132431 | 35.461 | 141 | 82 | 2 | 5 | 145 | 11 | 142 | 1.75e-26 | 99.4 |
| Msa0016310 | MtrunA17_Chr8g0335531 | 32.044 | 181 | 105 | 4 | 1 | 167 | 6 | 182 | 3.23e-26 | 98.6 |
| Msa0016310 | MtrunA17_Chr3g0132701 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 5.87e-26 | 99.0 |
| Msa0016310 | MtrunA17_Chr3g0132511 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 1.07e-25 | 98.2 |
| Msa0016310 | MtrunA17_Chr6g0481491 | 35.593 | 118 | 75 | 1 | 1 | 118 | 7 | 123 | 1.09e-24 | 95.1 |
| Msa0016310 | MtrunA17_Chr5g0394321 | 31.056 | 161 | 103 | 3 | 1 | 153 | 4 | 164 | 1.86e-23 | 91.3 |
| Msa0016310 | MtrunA17_Chr3g0132411 | 37.600 | 125 | 75 | 1 | 1 | 125 | 46 | 167 | 1.20e-22 | 89.0 |
| Msa0016310 | MtrunA17_Chr4g0064041 | 42.574 | 101 | 53 | 2 | 22 | 117 | 190 | 290 | 4.68e-22 | 91.3 |
| Msa0016310 | MtrunA17_Chr4g0064041 | 33.824 | 136 | 83 | 3 | 4 | 134 | 10 | 143 | 2.33e-16 | 75.5 |
| Msa0016310 | MtrunA17_Chr1g0205701 | 34.167 | 120 | 75 | 3 | 1 | 117 | 4 | 122 | 8.10e-21 | 84.7 |
| Msa0016310 | MtrunA17_Chr6g0459441 | 39.394 | 99 | 59 | 1 | 20 | 117 | 23 | 121 | 3.76e-20 | 82.8 |
| Msa0016310 | MtrunA17_Chr6g0453921 | 36.957 | 138 | 77 | 5 | 6 | 136 | 17 | 151 | 2.19e-19 | 80.9 |
| Msa0016310 | MtrunA17_Chr6g0453801 | 31.902 | 163 | 93 | 5 | 4 | 157 | 16 | 169 | 3.40e-19 | 80.1 |
| Msa0016310 | MtrunA17_Chr1g0211101 | 34.286 | 140 | 77 | 6 | 5 | 130 | 12 | 150 | 3.49e-19 | 80.1 |
| Msa0016310 | MtrunA17_Chr2g0289741 | 32.308 | 130 | 85 | 3 | 16 | 143 | 20 | 148 | 2.49e-18 | 77.8 |
| Msa0016310 | MtrunA17_Chr8g0387804 | 35.938 | 128 | 69 | 4 | 2 | 118 | 3 | 128 | 2.79e-17 | 73.9 |
| Msa0016310 | MtrunA17_Chr8g0380901 | 37.719 | 114 | 67 | 3 | 4 | 116 | 9 | 119 | 3.27e-17 | 73.6 |
| Msa0016310 | MtrunA17_Chr8g0360371 | 36.364 | 121 | 73 | 3 | 1 | 117 | 1 | 121 | 3.58e-17 | 77.0 |
| Msa0016310 | MtrunA17_Chr2g0306461 | 34.127 | 126 | 75 | 2 | 1 | 118 | 1 | 126 | 7.93e-17 | 74.3 |
| Msa0016310 | MtrunA17_Chr6g0458331 | 38.462 | 104 | 58 | 2 | 19 | 117 | 33 | 135 | 1.29e-16 | 73.2 |
| Msa0016310 | MtrunA17_Chr1g0150131 | 33.884 | 121 | 69 | 4 | 26 | 135 | 29 | 149 | 1.71e-15 | 70.5 |
| Msa0016310 | MtrunA17_Chr7g0253641 | 30.081 | 123 | 83 | 2 | 2 | 121 | 5 | 127 | 5.61e-15 | 70.1 |
| Msa0016310 | MtrunA17_Chr4g0073901 | 31.061 | 132 | 83 | 4 | 5 | 128 | 9 | 140 | 6.42e-15 | 68.9 |
| Msa0016310 | MtrunA17_Chr7g0253631 | 30.172 | 116 | 80 | 1 | 4 | 118 | 7 | 122 | 1.81e-14 | 68.9 |
| Msa0016310 | MtrunA17_Chr4g0073921 | 34.746 | 118 | 69 | 4 | 6 | 115 | 10 | 127 | 2.00e-14 | 69.3 |
| Msa0016310 | MtrunA17_Chr8g0385021 | 31.852 | 135 | 83 | 4 | 4 | 130 | 6 | 139 | 6.68e-14 | 67.8 |
| Msa0016310 | MtrunA17_Chr2g0324711 | 32.847 | 137 | 81 | 4 | 4 | 130 | 7 | 142 | 7.13e-14 | 68.2 |
| Msa0016310 | MtrunA17_Chr2g0331181 | 29.787 | 141 | 89 | 4 | 9 | 142 | 11 | 148 | 1.66e-13 | 65.5 |
| Msa0016310 | MtrunA17_Chr1g0188981 | 36.190 | 105 | 61 | 3 | 23 | 121 | 29 | 133 | 1.75e-13 | 65.5 |
| Msa0016310 | MtrunA17_Chr4g0062341 | 25.424 | 177 | 116 | 4 | 4 | 173 | 12 | 179 | 2.32e-13 | 64.7 |
| Msa0016310 | MtrunA17_Chr4g0062311 | 25.424 | 177 | 116 | 4 | 4 | 173 | 12 | 179 | 2.32e-13 | 64.7 |
| Msa0016310 | MtrunA17_Chr4g0040291 | 31.507 | 146 | 95 | 3 | 4 | 146 | 6 | 149 | 2.36e-13 | 65.1 |
| Msa0016310 | MtrunA17_Chr4g0041811 | 32.710 | 107 | 67 | 2 | 19 | 120 | 28 | 134 | 3.35e-13 | 65.1 |
| Msa0016310 | MtrunA17_Chr6g0453791 | 35.593 | 118 | 72 | 4 | 23 | 137 | 31 | 147 | 4.18e-13 | 63.9 |
| Msa0016310 | MtrunA17_Chr2g0301431 | 36.207 | 116 | 68 | 4 | 4 | 116 | 11 | 123 | 6.27e-13 | 62.4 |
| Msa0016310 | MtrunA17_Chr3g0136871 | 33.628 | 113 | 67 | 3 | 26 | 130 | 31 | 143 | 6.76e-13 | 63.5 |
| Msa0016310 | MtrunA17_Chr1g0177341 | 29.915 | 117 | 80 | 2 | 7 | 121 | 9 | 125 | 8.24e-13 | 62.8 |
| Msa0016310 | MtrunA17_Chr1g0177331 | 29.915 | 117 | 80 | 2 | 7 | 121 | 9 | 125 | 8.24e-13 | 62.8 |
| Msa0016310 | MtrunA17_Chr7g0253761 | 29.310 | 116 | 81 | 1 | 4 | 118 | 7 | 122 | 1.02e-12 | 63.2 |
| Msa0016310 | MtrunA17_Chr3g0125761 | 31.356 | 118 | 76 | 4 | 1 | 116 | 10 | 124 | 1.43e-12 | 61.6 |
| Msa0016310 | MtrunA17_Chr7g0253681 | 30.579 | 121 | 81 | 3 | 4 | 121 | 7 | 127 | 1.52e-12 | 62.4 |
| Msa0016310 | MtrunA17_Chr8g0380711 | 37.374 | 99 | 57 | 4 | 20 | 116 | 25 | 120 | 1.95e-12 | 61.2 |
| Msa0016310 | MtrunA17_Chr6g0483981 | 34.307 | 137 | 80 | 5 | 20 | 148 | 24 | 158 | 2.12e-12 | 64.3 |
| Msa0016310 | MtrunA17_Chr2g0319611 | 34.259 | 108 | 64 | 3 | 20 | 120 | 23 | 130 | 2.64e-12 | 63.2 |
| Msa0016310 | MtrunA17_Chr4g0039721 | 32.520 | 123 | 75 | 3 | 4 | 119 | 12 | 133 | 3.73e-12 | 61.6 |
| Msa0016310 | MtrunA17_Chr7g0253701 | 29.167 | 120 | 83 | 2 | 4 | 121 | 7 | 126 | 3.61e-11 | 58.5 |
| Msa0016310 | MtrunA17_Chr7g0253671 | 29.167 | 120 | 83 | 2 | 4 | 121 | 7 | 126 | 3.61e-11 | 58.5 |
| Msa0016310 | MtrunA17_Chr3g0144921 | 32.727 | 110 | 67 | 4 | 26 | 129 | 34 | 142 | 4.17e-11 | 58.5 |
| Msa0016310 | MtrunA17_Chr4g0001571 | 30.693 | 101 | 68 | 2 | 19 | 118 | 25 | 124 | 5.36e-11 | 58.2 |
| Msa0016310 | MtrunA17_Chr8g0385031 | 30.508 | 118 | 77 | 3 | 4 | 117 | 6 | 122 | 8.80e-11 | 59.3 |
| Msa0016310 | MtrunA17_Chr5g0440711 | 29.286 | 140 | 91 | 6 | 2 | 137 | 8 | 143 | 9.60e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016310 | AT5G07475.1 | 50.314 | 159 | 75 | 3 | 1 | 158 | 7 | 162 | 1.42e-49 | 159 |
| Msa0016310 | AT2G32300.1 | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 3.08e-30 | 111 |
| Msa0016310 | AT2G32300.2 | 43.590 | 117 | 65 | 1 | 2 | 117 | 35 | 151 | 1.04e-29 | 110 |
| Msa0016310 | AT2G31050.1 | 39.683 | 126 | 72 | 3 | 7 | 130 | 13 | 136 | 2.02e-24 | 94.7 |
| Msa0016310 | AT2G25060.1 | 39.735 | 151 | 69 | 5 | 4 | 136 | 16 | 162 | 3.86e-22 | 88.2 |
| Msa0016310 | AT2G26720.1 | 35.593 | 118 | 72 | 3 | 4 | 117 | 8 | 125 | 1.89e-21 | 87.0 |
| Msa0016310 | AT5G26330.1 | 39.604 | 101 | 58 | 2 | 20 | 117 | 21 | 121 | 2.35e-21 | 86.3 |
| Msa0016310 | AT3G60270.1 | 38.776 | 98 | 60 | 0 | 20 | 117 | 23 | 120 | 3.67e-21 | 85.9 |
| Msa0016310 | AT3G27200.1 | 36.522 | 115 | 70 | 2 | 6 | 117 | 7 | 121 | 5.52e-21 | 85.1 |
| Msa0016310 | AT5G25090.1 | 38.596 | 114 | 65 | 2 | 9 | 117 | 13 | 126 | 3.84e-20 | 83.2 |
| Msa0016310 | AT4G31840.1 | 35.256 | 156 | 91 | 6 | 4 | 151 | 10 | 163 | 5.05e-18 | 77.4 |
| Msa0016310 | AT1G72230.1 | 30.894 | 123 | 83 | 1 | 31 | 151 | 31 | 153 | 8.83e-18 | 77.0 |
| Msa0016310 | AT3G60280.1 | 37.755 | 98 | 61 | 0 | 20 | 117 | 21 | 118 | 1.06e-17 | 77.4 |
| Msa0016310 | AT3G20570.1 | 40.000 | 105 | 59 | 2 | 20 | 120 | 27 | 131 | 3.85e-17 | 75.9 |
| Msa0016310 | AT3G17675.1 | 30.769 | 117 | 78 | 2 | 4 | 117 | 11 | 127 | 1.12e-16 | 72.8 |
| Msa0016310 | AT5G53870.1 | 35.294 | 119 | 71 | 4 | 1 | 113 | 5 | 123 | 2.64e-16 | 75.5 |
| Msa0016310 | AT5G53870.2 | 35.294 | 119 | 71 | 4 | 1 | 113 | 5 | 123 | 2.92e-16 | 75.5 |
| Msa0016310 | AT2G23990.1 | 36.029 | 136 | 74 | 5 | 9 | 131 | 13 | 148 | 6.38e-16 | 72.4 |
| Msa0016310 | AT1G45063.2 | 34.127 | 126 | 75 | 4 | 1 | 120 | 6 | 129 | 6.97e-16 | 73.6 |
| Msa0016310 | AT1G45063.2 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 3.23e-12 | 63.5 |
| Msa0016310 | AT2G44790.1 | 38.000 | 100 | 56 | 2 | 20 | 117 | 29 | 124 | 8.79e-16 | 72.0 |
| Msa0016310 | AT1G45063.1 | 34.127 | 126 | 75 | 4 | 1 | 120 | 6 | 129 | 1.31e-15 | 73.6 |
| Msa0016310 | AT1G45063.1 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 5.81e-12 | 63.2 |
| Msa0016310 | AT4G28365.1 | 28.571 | 154 | 101 | 3 | 5 | 149 | 11 | 164 | 6.10e-15 | 69.7 |
| Msa0016310 | AT1G79800.1 | 34.454 | 119 | 66 | 4 | 23 | 130 | 34 | 151 | 8.90e-15 | 69.3 |
| Msa0016310 | AT4G27520.1 | 34.959 | 123 | 74 | 4 | 1 | 117 | 6 | 128 | 1.21e-14 | 70.9 |
| Msa0016310 | AT1G64640.1 | 36.364 | 121 | 70 | 3 | 19 | 132 | 29 | 149 | 2.75e-14 | 67.8 |
| Msa0016310 | AT3G53330.1 | 32.787 | 122 | 77 | 4 | 23 | 139 | 188 | 309 | 5.51e-14 | 68.6 |
| Msa0016310 | AT4G12880.1 | 31.897 | 116 | 75 | 3 | 6 | 118 | 12 | 126 | 3.62e-13 | 63.9 |
| Msa0016310 | AT5G57920.1 | 34.783 | 92 | 53 | 2 | 37 | 127 | 42 | 127 | 6.06e-13 | 64.3 |
| Msa0016310 | AT4G30590.1 | 33.884 | 121 | 73 | 4 | 4 | 117 | 8 | 128 | 6.71e-13 | 64.3 |
| Msa0016310 | AT3G18590.1 | 30.894 | 123 | 77 | 3 | 2 | 117 | 5 | 126 | 7.91e-13 | 63.9 |
| Msa0016310 | AT1G22480.1 | 31.624 | 117 | 75 | 1 | 4 | 120 | 5 | 116 | 9.23e-13 | 63.5 |
| Msa0016310 | AT5G57920.2 | 34.783 | 92 | 53 | 2 | 37 | 127 | 41 | 126 | 1.32e-12 | 63.2 |
| Msa0016310 | AT5G57920.3 | 32.710 | 107 | 61 | 3 | 26 | 127 | 59 | 159 | 1.43e-12 | 63.5 |
| Msa0016310 | AT4G32490.1 | 33.058 | 121 | 76 | 3 | 4 | 121 | 14 | 132 | 4.34e-12 | 62.4 |
| Msa0016310 | AT2G23990.2 | 30.968 | 155 | 75 | 6 | 9 | 131 | 13 | 167 | 3.05e-11 | 60.1 |
| Msa0016310 | AT3G01070.1 | 38.053 | 113 | 67 | 2 | 9 | 118 | 13 | 125 | 3.81e-11 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCGCTCTTCTTTGTTGA+TGG | 0.292064 | 1_1:-27086711 | None:intergenic |
| TCTGATCCAGCTACTGCTTT+TGG | 0.293698 | 1_1:-27086675 | None:intergenic |
| TATAGTTTATATTGCTGTTA+TGG | 0.320304 | 1_1:+27086764 | Msa0016310:CDS |
| GTGTTGGCAAATTACAGAAA+TGG | 0.435321 | 1_1:+27086519 | Msa0016310:CDS |
| CATTGACAAGAGCCGGAGAC+AGG | 0.497365 | 1_1:+27086556 | Msa0016310:CDS |
| CTGTCTCCGGCTCTTGTCAA+TGG | 0.513474 | 1_1:-27086555 | None:intergenic |
| CTAGCACCAAAAGCAGTAGC+TGG | 0.518482 | 1_1:+27086669 | Msa0016310:CDS |
| CTGTTGGAGATAGCTCTGGC+TGG | 0.524284 | 1_1:+27086007 | Msa0016310:CDS |
| TACACTGTTGGAGATAGCTC+TGG | 0.540204 | 1_1:+27086003 | Msa0016310:CDS |
| AACAAACTGTATTGCCTTGG+TGG | 0.541279 | 1_1:+27086594 | Msa0016310:CDS |
| ACATACAAAATACCTGTCTC+CGG | 0.555623 | 1_1:-27086568 | None:intergenic |
| ACGGTGCCATTGACAAGAGC+CGG | 0.574751 | 1_1:+27086549 | Msa0016310:CDS |
| ATGCAACACAACAAAAGTGT+TGG | 0.577530 | 1_1:+27086503 | Msa0016310:CDS |
| TCAGCAACTACCTACACTGT+TGG | 0.586019 | 1_1:+27085991 | Msa0016310:CDS |
| TGTTGGAGATAGCTCTGGCT+GGG | 0.608785 | 1_1:+27086008 | Msa0016310:CDS |
| CAGTAGCTGGATCAGATCAA+AGG | 0.609991 | 1_1:+27086682 | Msa0016310:CDS |
| AGAGCTATCTCCAACAGTGT+AGG | 0.611707 | 1_1:-27086001 | None:intergenic |
| CATGTTCATGTAGAAGATGA+CGG | 0.616290 | 1_1:+27086627 | Msa0016310:CDS |
| ATCGACATACAGTGTGGACG+AGG | 0.624451 | 1_1:+27086458 | Msa0016310:CDS |
| TTAGCTCTAATCTAGAAACA+TGG | 0.627015 | 1_1:+27086034 | Msa0016310:CDS |
| TAGCTCTAATCTAGAAACAT+GGG | 0.636260 | 1_1:+27086035 | Msa0016310:CDS |
| GGAAACAAACTGTATTGCCT+TGG | 0.642701 | 1_1:+27086591 | Msa0016310:CDS |
| ACAAACTGTATTGCCTTGGT+GGG | 0.646382 | 1_1:+27086595 | Msa0016310:CDS |
| CATGAAGTTTCATCCCACCA+AGG | 0.728162 | 1_1:-27086608 | None:intergenic |
| ATATTCATCGACATACAGTG+TGG | 0.739211 | 1_1:+27086452 | Msa0016310:CDS |
| TTACAGAAATGGAAACACGA+CGG | 0.770222 | 1_1:+27086530 | Msa0016310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATATTTGTATTTTTG+AGG | + | chr1_1:27086270-27086289 | Msa0016310:intron | 10.0% |
| !!! | ATTTATATTTGTATTTTTGA+GGG | + | chr1_1:27086271-27086290 | Msa0016310:intron | 10.0% |
| !!! | TATTTATATTTGTATTTTTG+AGG | + | chr1_1:27086270-27086289 | Msa0016310:intron | 10.0% |
| !!! | ATTTATATTTGTATTTTTGA+GGG | + | chr1_1:27086271-27086290 | Msa0016310:intron | 10.0% |
| !! | AATTATTGAATGAAAGATAA+AGG | - | chr1_1:27086104-27086123 | None:intergenic | 15.0% |
| !! | ATAATTCAATTTATGTGAAT+TGG | - | chr1_1:27086179-27086198 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATCCATATA+TGG | - | chr1_1:27086241-27086260 | None:intergenic | 15.0% |
| !! | AATTATTGAATGAAAGATAA+AGG | - | chr1_1:27086104-27086123 | None:intergenic | 15.0% |
| !! | ATAATTCAATTTATGTGAAT+TGG | - | chr1_1:27086179-27086198 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATCCATATA+TGG | - | chr1_1:27086241-27086260 | None:intergenic | 15.0% |
| !!! | TGATTGATTTTGATATGTTA+TGG | - | chr1_1:27086206-27086225 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | + | chr1_1:27086373-27086392 | Msa0016310:intron | 20.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | - | chr1_1:27086440-27086459 | None:intergenic | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | + | chr1_1:27086764-27086783 | Msa0016310:CDS | 20.0% |
| !!! | AAAAAAATTACAGTTTTGCT+TGG | + | chr1_1:27086897-27086916 | Msa0016310:three_prime_UTR | 20.0% |
| !!! | TGATTGATTTTGATATGTTA+TGG | - | chr1_1:27086206-27086225 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | + | chr1_1:27086373-27086392 | Msa0016310:intron | 20.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | - | chr1_1:27086440-27086459 | None:intergenic | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | + | chr1_1:27086764-27086783 | Msa0016310:CDS | 20.0% |
| !!! | AAAAAAATTACAGTTTTGCT+TGG | + | chr1_1:27086897-27086916 | Msa0016310:three_prime_UTR | 20.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | + | chr1_1:27086060-27086079 | Msa0016310:CDS | 25.0% |
| !! | GACAATTTTTACAACCATTT+GGG | + | chr1_1:27086395-27086414 | Msa0016310:intron | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | - | chr1_1:27086412-27086431 | None:intergenic | 25.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | + | chr1_1:27086060-27086079 | Msa0016310:CDS | 25.0% |
| !! | GACAATTTTTACAACCATTT+GGG | + | chr1_1:27086395-27086414 | Msa0016310:intron | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | - | chr1_1:27086412-27086431 | None:intergenic | 25.0% |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | + | chr1_1:27085954-27085973 | Msa0016310:CDS | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | + | chr1_1:27086034-27086053 | Msa0016310:CDS | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | + | chr1_1:27086035-27086054 | Msa0016310:CDS | 30.0% |
| ATTCTTCTTGTGACCATATA+TGG | + | chr1_1:27086225-27086244 | Msa0016310:intron | 30.0% | |
| ! | GGACAATTTTTACAACCATT+TGG | + | chr1_1:27086394-27086413 | Msa0016310:intron | 30.0% |
| ! | CTGTTATGGTAGCTTTTTAT+GGG | + | chr1_1:27086778-27086797 | Msa0016310:CDS | 30.0% |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | + | chr1_1:27085954-27085973 | Msa0016310:CDS | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | + | chr1_1:27086034-27086053 | Msa0016310:CDS | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | + | chr1_1:27086035-27086054 | Msa0016310:CDS | 30.0% |
| ATTCTTCTTGTGACCATATA+TGG | + | chr1_1:27086225-27086244 | Msa0016310:intron | 30.0% | |
| ! | GGACAATTTTTACAACCATT+TGG | + | chr1_1:27086394-27086413 | Msa0016310:intron | 30.0% |
| ! | CTGTTATGGTAGCTTTTTAT+GGG | + | chr1_1:27086778-27086797 | Msa0016310:CDS | 30.0% |
| ATATTCATCGACATACAGTG+TGG | + | chr1_1:27086452-27086471 | Msa0016310:CDS | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | + | chr1_1:27086503-27086522 | Msa0016310:CDS | 35.0% |
| ! | GTGTTGGCAAATTACAGAAA+TGG | + | chr1_1:27086519-27086538 | Msa0016310:CDS | 35.0% |
| TTACAGAAATGGAAACACGA+CGG | + | chr1_1:27086530-27086549 | Msa0016310:CDS | 35.0% | |
| ACATACAAAATACCTGTCTC+CGG | - | chr1_1:27086571-27086590 | None:intergenic | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | + | chr1_1:27086627-27086646 | Msa0016310:CDS | 35.0% | |
| !! | AAGAGCGCAGAATTTTCAAA+GGG | + | chr1_1:27086723-27086742 | Msa0016310:CDS | 35.0% |
| ! | GCTGTTATGGTAGCTTTTTA+TGG | + | chr1_1:27086777-27086796 | Msa0016310:CDS | 35.0% |
| ATATTCATCGACATACAGTG+TGG | + | chr1_1:27086452-27086471 | Msa0016310:CDS | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | + | chr1_1:27086503-27086522 | Msa0016310:CDS | 35.0% |
| ! | GTGTTGGCAAATTACAGAAA+TGG | + | chr1_1:27086519-27086538 | Msa0016310:CDS | 35.0% |
| TTACAGAAATGGAAACACGA+CGG | + | chr1_1:27086530-27086549 | Msa0016310:CDS | 35.0% | |
| ACATACAAAATACCTGTCTC+CGG | - | chr1_1:27086571-27086590 | None:intergenic | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | + | chr1_1:27086627-27086646 | Msa0016310:CDS | 35.0% | |
| !! | AAGAGCGCAGAATTTTCAAA+GGG | + | chr1_1:27086723-27086742 | Msa0016310:CDS | 35.0% |
| ! | GCTGTTATGGTAGCTTTTTA+TGG | + | chr1_1:27086777-27086796 | Msa0016310:CDS | 35.0% |
| ! | GGAGACAGGTATTTTGTATG+TGG | + | chr1_1:27086570-27086589 | Msa0016310:CDS | 40.0% |
| GGAAACAAACTGTATTGCCT+TGG | + | chr1_1:27086591-27086610 | Msa0016310:CDS | 40.0% | |
| AACAAACTGTATTGCCTTGG+TGG | + | chr1_1:27086594-27086613 | Msa0016310:CDS | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | + | chr1_1:27086595-27086614 | Msa0016310:CDS | 40.0% | |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | - | chr1_1:27086666-27086685 | None:intergenic | 40.0% |
| !! | GAAGAGCGCAGAATTTTCAA+AGG | + | chr1_1:27086722-27086741 | Msa0016310:CDS | 40.0% |
| ! | GGAGACAGGTATTTTGTATG+TGG | + | chr1_1:27086570-27086589 | Msa0016310:CDS | 40.0% |
| GGAAACAAACTGTATTGCCT+TGG | + | chr1_1:27086591-27086610 | Msa0016310:CDS | 40.0% | |
| AACAAACTGTATTGCCTTGG+TGG | + | chr1_1:27086594-27086613 | Msa0016310:CDS | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | + | chr1_1:27086595-27086614 | Msa0016310:CDS | 40.0% | |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | - | chr1_1:27086666-27086685 | None:intergenic | 40.0% |
| !! | GAAGAGCGCAGAATTTTCAA+AGG | + | chr1_1:27086722-27086741 | Msa0016310:CDS | 40.0% |
| TCAGCAACTACCTACACTGT+TGG | + | chr1_1:27085991-27086010 | Msa0016310:CDS | 45.0% | |
| AGAGCTATCTCCAACAGTGT+AGG | - | chr1_1:27086004-27086023 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | + | chr1_1:27086003-27086022 | Msa0016310:CDS | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | - | chr1_1:27086611-27086630 | None:intergenic | 45.0% | |
| ! | TCTGATCCAGCTACTGCTTT+TGG | - | chr1_1:27086678-27086697 | None:intergenic | 45.0% |
| CAGTAGCTGGATCAGATCAA+AGG | + | chr1_1:27086682-27086701 | Msa0016310:CDS | 45.0% | |
| TCTGCGCTCTTCTTTGTTGA+TGG | - | chr1_1:27086714-27086733 | None:intergenic | 45.0% | |
| TCAGCAACTACCTACACTGT+TGG | + | chr1_1:27085991-27086010 | Msa0016310:CDS | 45.0% | |
| AGAGCTATCTCCAACAGTGT+AGG | - | chr1_1:27086004-27086023 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | + | chr1_1:27086003-27086022 | Msa0016310:CDS | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | - | chr1_1:27086611-27086630 | None:intergenic | 45.0% | |
| ! | TCTGATCCAGCTACTGCTTT+TGG | - | chr1_1:27086678-27086697 | None:intergenic | 45.0% |
| CAGTAGCTGGATCAGATCAA+AGG | + | chr1_1:27086682-27086701 | Msa0016310:CDS | 45.0% | |
| TCTGCGCTCTTCTTTGTTGA+TGG | - | chr1_1:27086714-27086733 | None:intergenic | 45.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | + | chr1_1:27086008-27086027 | Msa0016310:CDS | 50.0% |
| ATCGACATACAGTGTGGACG+AGG | + | chr1_1:27086458-27086477 | Msa0016310:CDS | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | + | chr1_1:27086669-27086688 | Msa0016310:CDS | 50.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | + | chr1_1:27086008-27086027 | Msa0016310:CDS | 50.0% |
| ATCGACATACAGTGTGGACG+AGG | + | chr1_1:27086458-27086477 | Msa0016310:CDS | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | + | chr1_1:27086669-27086688 | Msa0016310:CDS | 50.0% | |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | + | chr1_1:27086007-27086026 | Msa0016310:CDS | 55.0% |
| !! | ACGGTGCCATTGACAAGAGC+CGG | + | chr1_1:27086549-27086568 | Msa0016310:CDS | 55.0% |
| CTGTCTCCGGCTCTTGTCAA+TGG | - | chr1_1:27086558-27086577 | None:intergenic | 55.0% | |
| CATTGACAAGAGCCGGAGAC+AGG | + | chr1_1:27086556-27086575 | Msa0016310:CDS | 55.0% | |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | + | chr1_1:27086007-27086026 | Msa0016310:CDS | 55.0% |
| !! | ACGGTGCCATTGACAAGAGC+CGG | + | chr1_1:27086549-27086568 | Msa0016310:CDS | 55.0% |
| CTGTCTCCGGCTCTTGTCAA+TGG | - | chr1_1:27086558-27086577 | None:intergenic | 55.0% | |
| CATTGACAAGAGCCGGAGAC+AGG | + | chr1_1:27086556-27086575 | Msa0016310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27085937 | 27086963 | 27085937 | ID=Msa0016310;Name=Msa0016310 |
| chr1_1 | mRNA | 27085937 | 27086963 | 27085937 | ID=Msa0016310-mRNA-1;Parent=Msa0016310;Name=Msa0016310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|148|175 |
| chr1_1 | exon | 27085937 | 27086093 | 27085937 | ID=Msa0016310-mRNA-1:exon:9058;Parent=Msa0016310-mRNA-1 |
| chr1_1 | exon | 27086445 | 27086963 | 27086445 | ID=Msa0016310-mRNA-1:exon:9059;Parent=Msa0016310-mRNA-1 |
| chr1_1 | CDS | 27085937 | 27086093 | 27085937 | ID=Msa0016310-mRNA-1:cds;Parent=Msa0016310-mRNA-1 |
| chr1_1 | CDS | 27086445 | 27086815 | 27086445 | ID=Msa0016310-mRNA-1:cds;Parent=Msa0016310-mRNA-1 |
| chr1_1 | three_prime_UTR | 27086816 | 27086963 | 27086816 | ID=Msa0016310-mRNA-1:three_prime_utr;Parent=Msa0016310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
