AlfalfaGEDB | Msa0129990

M. sativa cultivar zhongmu-4 / Msa0129990

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129990	sp\|Q94A57\|PHL2_ARATH	48.707	232	93	5	38	245	30	259	1.07e-63	205

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129990	A0A072VPG6	96.333	300	6	2	1	300	1	295	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
Msa0129990	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0129990	0.813104	3.029771e-51	-8.615850e-47
Msa0034870	Msa0129990	0.974657	1.525582e-138	-8.615850e-47
Msa0124060	Msa0129990	0.809303	2.023070e-50	-8.615850e-47
Msa0129990	Msa0168500	0.801257	9.807246e-49	-8.615850e-47
Msa0129990	Msa0175780	0.824340	8.513165e-54	-8.615850e-47
Msa0129990	Msa0569200	0.803630	3.180982e-49	-8.615850e-47
Msa0129990	Msa1203710	0.802304	5.976998e-49	-8.615850e-47
Msa0129990	Msa1229500	0.802763	4.808129e-49	-8.615850e-47
Msa0129990	Msa1271990	0.807469	4.978546e-50	-8.615850e-47
Msa0129990	Msa1382560	0.824329	8.563065e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129990	MtrunA17_Chr1g0197171	96.333	300	6	2	1	300	1	295	0.0	599
Msa0129990	MtrunA17_Chr2g0290991	69.040	323	67	6	1	300	1	313	2.69e-150	423
Msa0129990	MtrunA17_Chr8g0356501	52.096	167	67	4	29	191	17	174	5.84e-46	158
Msa0129990	MtrunA17_Chr2g0310011	57.534	146	50	3	38	180	24	160	2.52e-44	154
Msa0129990	MtrunA17_Chr5g0409731	52.980	151	63	4	42	186	18	166	4.01e-43	149
Msa0129990	MtrunA17_Chr5g0417521	50.704	142	67	1	42	180	8	149	2.98e-39	140
Msa0129990	MtrunA17_Chr4g0042451	48.718	156	71	4	42	191	10	162	3.71e-39	140
Msa0129990	MtrunA17_Chr7g0254981	48.252	143	52	2	49	183	50	178	8.41e-39	137
Msa0129990	MtrunA17_Chr6g0461641	39.378	193	109	3	28	212	21	213	5.82e-38	138
Msa0129990	MtrunA17_Chr2g0321461	41.270	189	99	4	36	212	32	220	6.95e-38	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129990	AT3G24120.1	48.707	232	93	5	38	245	30	259	1.08e-64	205
Msa0129990	AT4G13640.1	48.889	225	95	4	39	244	27	250	9.58e-64	203
Msa0129990	AT3G24120.2	48.085	235	93	6	38	245	30	262	1.47e-62	200
Msa0129990	AT4G13640.2	48.246	228	95	5	39	244	27	253	1.37e-61	197
Msa0129990	AT1G79430.2	54.601	163	61	4	33	191	18	171	1.26e-47	163
Msa0129990	AT3G04030.3	39.754	244	111	8	29	246	25	258	1.59e-40	145
Msa0129990	AT3G12730.1	51.282	156	58	4	42	188	16	162	1.82e-40	141
Msa0129990	AT1G69580.1	47.337	169	68	4	38	191	23	185	3.05e-40	143
Msa0129990	AT1G69580.2	47.619	168	70	5	38	191	23	186	2.33e-39	141
Msa0129990	AT5G18240.1	37.190	242	120	6	29	246	25	258	2.01e-38	140

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Find 93 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAAGACTTTGGTTT+TGG	0.220050	1_3:-60059458	None:intergenic
AAATGCTTAGTAGCTTAATT+TGG	0.222202	1_3:+60063300	Msa0129990:three_prime_UTR
AAATTCGCCAAGATGCAGAA+CGG	0.668751	1_3:+60062763	Msa0129990:CDS
AACAGTTAGCCCCTTGAGGC+TGG	0.437173	1_3:-60062941	None:intergenic
AAGTAAGCTACATTTACTAG+TGG	0.617641	1_3:+60062094	Msa0129990:CDS
AAGTGAAAAGAACAAGACTT+TGG	0.504304	1_3:-60059464	None:intergenic
AATAGCAAGGTATGGAATGT+AGG	0.459706	1_3:+60063136	Msa0129990:CDS
ACACTAGAAGGATCACCTAG+TGG	0.682794	1_3:+60063008	Msa0129990:CDS
ACAGGAGAAAATGAAGGAAA+TGG	0.425402	1_3:-60059516	None:intergenic
ACATCACTTGAGAGTCTCAA+AGG	0.584426	1_3:+60062981	Msa0129990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGAAAAGAACAAGACTT+TGG	-	chr1_3:60059467-60059486	None:intergenic	30.0%
AGTATTACAGGAGAAAATGA+AGG	-	chr1_3:60059525-60059544	None:intergenic	30.0%
TTGCGATTATGACAAATCTA+CGG	+	chr1_3:60060178-60060197	Msa0129990:intron	30.0%
TACCAAAAATGCACTTAAGA+AGG	+	chr1_3:60060204-60060223	Msa0129990:intron	30.0%
ACTAGTAAATACAACCTCAA+GGG	+	chr1_3:60060262-60060281	Msa0129990:intron	30.0%
GGTTTAACACAATTAGAATG+TGG	+	chr1_3:60060283-60060302	Msa0129990:intron	30.0%
CAAGTGCATAATTATTCACA+TGG	-	chr1_3:60060406-60060425	None:intergenic	30.0%
GATAGATTTATTTGTACCTC+TGG	+	chr1_3:60060478-60060497	Msa0129990:intron	30.0%
ACTTTGGATTATGACTGATT+TGG	-	chr1_3:60060930-60060949	None:intergenic	30.0%
CATAATCCAAAGTCCAAATT+AGG	+	chr1_3:60060937-60060956	Msa0129990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	60059401	60063345	60059401	ID=Msa0129990;Name=Msa0129990
chr1_3	mRNA	60059401	60063345	60059401	ID=Msa0129990-mRNA-1;Parent=Msa0129990;Name=Msa0129990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=216\|1\|1\|1\|1\|1\|6\|188\|300
chr1_3	exon	60059401	60059836	60059401	ID=Msa0129990-mRNA-1:exon:19667;Parent=Msa0129990-mRNA-1
chr1_3	exon	60061422	60061498	60061422	ID=Msa0129990-mRNA-1:exon:19668;Parent=Msa0129990-mRNA-1
chr1_3	exon	60061605	60061659	60061605	ID=Msa0129990-mRNA-1:exon:19669;Parent=Msa0129990-mRNA-1
chr1_3	exon	60061877	60061946	60061877	ID=Msa0129990-mRNA-1:exon:19670;Parent=Msa0129990-mRNA-1
chr1_3	exon	60062049	60062118	60062049	ID=Msa0129990-mRNA-1:exon:19671;Parent=Msa0129990-mRNA-1
chr1_3	exon	60062747	60063345	60062747	ID=Msa0129990-mRNA-1:exon:19672;Parent=Msa0129990-mRNA-1
chr1_3	five_prime_UTR	60059401	60059616	60059401	ID=Msa0129990-mRNA-1:five_prime_utr;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60059617	60059836	60059617	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60061422	60061498	60061422	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60061605	60061659	60061605	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60061877	60061946	60061877	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60062049	60062118	60062049	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	CDS	60062747	60063157	60062747	ID=Msa0129990-mRNA-1:cds;Parent=Msa0129990-mRNA-1
chr1_3	three_prime_UTR	60063158	60063345	60063158	ID=Msa0129990-mRNA-1:three_prime_utr;Parent=Msa0129990-mRNA-1

Gene Sequence

>Msa0129990

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGCTGCTGCCGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTACCAAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAAGCTGGAAAAGATTTTGACGAGGGATGCAAAGATGGGTCATATCTTCTAGAAAGCCCTGGTACTGAAAACTCATCCCCAAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGGTATATGGCCATGCTAGAGAGAGCGTGTAAGATGTTGGCTGATCAATTTATCGGTGATACAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACCGAGCTAGGTGGAAATGGAATGCATGTTTCAGAAATACCATATATTCTCCAGCCTCAAGGGGCTAACTGTTCCACTGAAAGTTGCCTAACATCACTTGAGAGTCTCAAAGGATTGACACTAGAAGGATCACCTAGTGGGACAAAGAGGATGCTGGGCTTGGACTCCATGGTATCACCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAACCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG

Protein sequence

>Msa0129990

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAAAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSTELGGNGMHVSEIPYILQPQGANCSTESCLTSLESLKGLTLEGSPSGTKRMLGLDSMVSPLIWSETNMRTQGIHLTQVNPQGIARYGM*