AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168500 MtrunA17_Chr1g0184901 100.000 134 0 0 1 134 1 134 8.52e-94 266
Msa0168500 MtrunA17_Chr1g0211651 91.473 129 11 0 6 134 3 131 4.51e-82 236
Msa0168500 MtrunA17_Chr1g0148961 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0168500 MtrunA17_Chr1g0148951 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0168500 MtrunA17_Chr4g0024701 73.881 134 15 1 1 134 1 114 8.12e-55 167
Msa0168500 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 8.07e-40 130
Msa0168500 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 9.64e-40 129
Msa0168500 MtrunA17_Chr7g0268831 59.016 122 47 3 11 130 6 126 2.14e-39 129
Msa0168500 MtrunA17_Chr7g0273351 59.664 119 45 3 14 130 6 123 1.14e-38 127
Msa0168500 MtrunA17_Chr7g0259151 55.118 127 50 3 10 130 1 126 4.17e-38 126
Msa0168500 MtrunA17_Chr7g0273331 59.664 119 45 3 14 130 62 179 9.34e-38 127
Msa0168500 MtrunA17_Chr7g0272611 55.752 113 48 2 19 130 19 130 4.70e-36 120
Msa0168500 MtrunA17_Chr4g0031041 60.550 109 41 2 23 130 15 122 9.62e-36 120
Msa0168500 MtrunA17_Chr2g0327951 60.550 109 41 2 23 130 56 163 1.27e-35 121
Msa0168500 MtrunA17_Chr4g0035621 62.500 104 37 2 28 130 26 128 6.80e-35 118
Msa0168500 MtrunA17_Chr4g0032301 60.952 105 39 2 27 130 25 128 1.02e-34 117
Msa0168500 MtrunA17_Chr4g0031001 61.538 104 38 2 28 130 26 128 1.22e-34 117
Msa0168500 MtrunA17_Chr4g0031651 60.952 105 39 2 27 130 25 128 1.29e-34 117
Msa0168500 MtrunA17_Chr2g0327931 60.952 105 39 2 27 130 24 127 1.42e-34 117
Msa0168500 MtrunA17_Chr8g0379311 58.716 109 43 2 27 134 25 132 2.01e-34 117
Msa0168500 MtrunA17_Chr7g0273341 52.101 119 43 5 14 130 45 151 2.33e-27 99.4
Msa0168500 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 1.30e-20 80.9
Msa0168500 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 7.69e-19 78.2
Msa0168500 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 2.52e-18 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168500 AT3G54560.1 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0168500 AT3G54560.2 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0168500 AT2G38810.1 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0168500 AT2G38810.4 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0168500 AT2G38810.3 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0168500 AT2G38810.2 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0168500 AT1G52740.1 82.836 134 23 0 1 134 1 134 2.15e-71 210
Msa0168500 AT4G13570.1 78.022 91 20 0 34 124 28 118 3.31e-47 148
Msa0168500 AT4G13570.2 78.889 90 19 0 35 124 35 124 6.73e-47 148
Msa0168500 AT3G20670.1 64.545 110 37 2 24 132 14 122 6.60e-40 130
Msa0168500 AT4G27230.2 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0168500 AT4G27230.1 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0168500 AT5G54640.1 64.545 110 37 2 24 132 14 122 1.17e-39 130
Msa0168500 AT1G51060.1 63.889 108 37 2 24 130 14 120 4.32e-39 128
Msa0168500 AT5G02560.1 60.177 113 43 2 23 134 21 132 1.17e-38 128
Msa0168500 AT1G08880.1 59.829 117 44 3 14 128 9 124 1.62e-38 127
Msa0168500 AT1G54690.1 59.829 117 44 3 14 128 9 124 2.02e-38 127
Msa0168500 AT5G27670.1 60.177 113 43 2 19 130 18 129 9.53e-37 123
Msa0168500 AT5G59870.1 59.633 109 42 2 23 130 21 128 7.61e-35 118
Msa0168500 AT5G02560.2 49.635 137 43 3 23 134 21 156 2.98e-33 115

Find 59 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTTGCAGCTTGCTATC+AGG 0.247896 1_4:-51148883 Msa0168500:CDS
CTGTGATTTGTAGTCTTTAT+TGG 0.272896 1_4:-51148523 Msa0168500:three_prime_UTR
AGCAACAGCTGCAGTGTATT+TGG 0.282329 1_4:-51148993 Msa0168500:CDS
TTCTTCTCGTGCTGGAATTC+AGG 0.284428 1_4:-51150005 Msa0168500:intron
AAAGCAAAGAAATCATTCTT+TGG 0.335830 1_4:+51148769 None:intergenic
GGTATTCTTATGTGGTCATT+TGG 0.337403 1_4:-51148618 Msa0168500:three_prime_UTR
TTGATATGGTAGTGTGTAAA+TGG 0.352891 1_4:-51148642 Msa0168500:three_prime_UTR
AGTGTATTTGGCATCCATTC+TGG 0.360664 1_4:-51148981 Msa0168500:CDS
CAGCAATTGTTCCCTTGATA+AGG 0.371937 1_4:+51148840 None:intergenic
CTTATCAAGGGAACAATTGC+TGG 0.372156 1_4:-51148839 Msa0168500:CDS
TCGAAAAGAAAATAATGAAT+GGG 0.416814 1_4:+51150300 None:intergenic
CTCCGACACGTCCATTAGCT+TGG 0.422586 1_4:+51149014 None:intergenic
TTCTTATGTGGTCATTTGGA+TGG 0.435634 1_4:-51148614 Msa0168500:three_prime_UTR
AGCAATTGTTCCCTTGATAA+GGG 0.441041 1_4:+51148841 None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG 0.447447 1_4:-51149025 Msa0168500:CDS
ATCGAAAAGAAAATAATGAA+TGG 0.459577 1_4:+51150299 None:intergenic
TTTATTATGACTTGAAATGA+TGG 0.467990 1_4:-51148701 Msa0168500:three_prime_UTR
ACTTCTCGTTCTTCTCGTGC+TGG 0.468244 1_4:-51150013 Msa0168500:CDS
AAATGCTAGCAAAGATTTGA+AGG 0.477120 1_4:-51148924 Msa0168500:CDS
GACTGCTGAAGTTCTTGAGC+TGG 0.480553 1_4:-51148951 Msa0168500:CDS
CTCTTTGCTTCAGCTGTCTG+TGG 0.485476 1_4:+51149038 None:intergenic
GCATTTGCAGCTTGCTATCA+GGG 0.487874 1_4:-51148882 Msa0168500:CDS
GCTGAAGTTCTTGAGCTGGC+TGG 0.490963 1_4:-51148947 Msa0168500:CDS
TCAGGTGATTAAGCAATGGC+AGG 0.495436 1_4:-51150106 Msa0168500:intron
TTAGATATTTGTGATGCTGT+TGG 0.505058 1_4:-51148576 Msa0168500:three_prime_UTR
ATGGCAGGAAAAGGAGGAAA+AGG 0.512104 1_4:-51150091 Msa0168500:CDS
GGAACTTGATACCCTTATCA+AGG 0.512125 1_4:-51148852 Msa0168500:CDS
TTTGATCTGTGCAATGGTTG+GGG 0.512671 1_4:-51148472 Msa0168500:three_prime_UTR
TCAAAACAAACAAAACAAGC+AGG 0.513874 1_4:+51148490 None:intergenic
GATTAAGCAATGGCAGGAAA+AGG 0.523608 1_4:-51150100 Msa0168500:exon
CTTGTCTTTGTTAGCCGCGG+TGG 0.527714 1_4:+51150051 None:intergenic
GAAATGATGGTGATCACAGT+AGG 0.529426 1_4:-51148688 Msa0168500:three_prime_UTR
GTCCTTGTCTTTGTTAGCCG+CGG 0.546728 1_4:+51150048 None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG 0.563947 1_4:-51148916 Msa0168500:CDS
TGGTGGTTGTAGTTTCCTGT+GGG 0.573166 1_4:-51149067 Msa0168500:intron
ATGGTGGTTGTAGTTTCCTG+TGG 0.574055 1_4:-51149068 Msa0168500:intron
CGAAAAGAAAATAATGAATG+GGG 0.589244 1_4:+51150301 None:intergenic
GGTTGTAGTTTCCTGTGGGT+AGG 0.590033 1_4:-51149063 Msa0168500:intron
AGCAGTCAGATACTCCAGAA+TGG 0.591746 1_4:+51148967 None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG 0.592261 1_4:+51148887 None:intergenic
GCTTGCTATCAGGGGAGATG+AGG 0.593400 1_4:-51148873 Msa0168500:CDS
GTCCAAGCTAATGGACGTGT+CGG 0.596665 1_4:-51149016 Msa0168500:CDS
CAAAACAAACAAAACAAGCA+GGG 0.601544 1_4:+51148491 None:intergenic
TAAATGGTGGTATTCTTATG+TGG 0.602361 1_4:-51148626 Msa0168500:three_prime_UTR
TAAGCAATGGCAGGAAAAGG+AGG 0.606722 1_4:-51150097 Msa0168500:exon
AGCACGAGAAGAACGAGAAG+TGG 0.609010 1_4:+51150015 None:intergenic
CATTTGCAGCTTGCTATCAG+GGG 0.612353 1_4:-51148881 Msa0168500:CDS
AAATGATGGTGATCACAGTA+GGG 0.620882 1_4:-51148687 Msa0168500:three_prime_UTR
AAGGGAACAATTGCTGGTGG+TGG 0.621502 1_4:-51148833 Msa0168500:CDS
GAACTTGATACCCTTATCAA+GGG 0.630061 1_4:-51148851 Msa0168500:CDS
ATCAAGGACTTGTGGATGTG+AGG 0.631787 1_4:+51148803 None:intergenic
GCACGAGAAGAACGAGAAGT+GGG 0.642443 1_4:+51150016 None:intergenic
CACCGCGGCTAACAAAGACA+AGG 0.646788 1_4:-51150050 Msa0168500:CDS
TGTCTGTGGATCCTACCCAC+AGG 0.647982 1_4:+51149052 None:intergenic
ATCAAGGGAACAATTGCTGG+TGG 0.659902 1_4:-51148836 Msa0168500:CDS
ATATGGTAGTGTGTAAATGG+TGG 0.704651 1_4:-51148639 Msa0168500:three_prime_UTR
AACAAACAAAACAAGCAGGG+AGG 0.722263 1_4:+51148494 None:intergenic
AGGTGAAGAGGATTACACCA+AGG 0.739394 1_4:-51148904 Msa0168500:CDS
CGTTGCAGCGAAAACCACCG+CGG 0.789660 1_4:-51150065 Msa0168500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_4:51148934-51148953 Msa0168500:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_4:51148935-51148954 Msa0168500:CDS 15.0%
!!! GTAAGTTTAATTTTGATTTA+AGG - chr1_4:51149365-51149384 Msa0168500:intron 15.0%
!! ATTCTTAAGTTACAAATATT+AGG + chr1_4:51149426-51149445 None:intergenic 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_4:51148934-51148953 Msa0168500:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_4:51148935-51148954 Msa0168500:CDS 15.0%
!!! GTAAGTTTAATTTTGATTTA+AGG - chr1_4:51149365-51149384 Msa0168500:intron 15.0%
!! ATTCTTAAGTTACAAATATT+AGG + chr1_4:51149426-51149445 None:intergenic 15.0%
!! TCGAAAAGAAAATAATGAAT+GGG + chr1_4:51148477-51148496 None:intergenic 20.0%
!! ATCGAAAAGAAAATAATGAA+TGG + chr1_4:51148478-51148497 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_4:51148822-51148841 Msa0168500:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_4:51148823-51148842 Msa0168500:CDS 20.0%
!!! TCTCTGTTCTTTAATTTTTT+AGG - chr1_4:51149060-51149079 Msa0168500:intron 20.0%
!!! CTCTGTTCTTTAATTTTTTA+GGG - chr1_4:51149061-51149080 Msa0168500:intron 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_4:51149066-51149085 Msa0168500:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_4:51149067-51149086 Msa0168500:intron 20.0%
!! ATTTGTAACTTAAGAATTTG+AGG - chr1_4:51149429-51149448 Msa0168500:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_4:51149614-51149633 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_4:51149653-51149672 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG - chr1_4:51149687-51149706 Msa0168500:intron 20.0%
!! TTTATTATGACTTGAAATGA+TGG - chr1_4:51150073-51150092 Msa0168500:CDS 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_4:51150118-51150137 Msa0168500:intron 20.0%
!! TCGAAAAGAAAATAATGAAT+GGG + chr1_4:51148477-51148496 None:intergenic 20.0%
!! ATCGAAAAGAAAATAATGAA+TGG + chr1_4:51148478-51148497 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_4:51148822-51148841 Msa0168500:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_4:51148823-51148842 Msa0168500:CDS 20.0%
!!! TCTCTGTTCTTTAATTTTTT+AGG - chr1_4:51149060-51149079 Msa0168500:intron 20.0%
!!! CTCTGTTCTTTAATTTTTTA+GGG - chr1_4:51149061-51149080 Msa0168500:intron 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_4:51149066-51149085 Msa0168500:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_4:51149067-51149086 Msa0168500:intron 20.0%
!! ATTTGTAACTTAAGAATTTG+AGG - chr1_4:51149429-51149448 Msa0168500:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_4:51149614-51149633 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_4:51149653-51149672 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG - chr1_4:51149687-51149706 Msa0168500:intron 20.0%
!! TTTATTATGACTTGAAATGA+TGG - chr1_4:51150073-51150092 Msa0168500:CDS 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_4:51150118-51150137 Msa0168500:intron 20.0%
! CGAAAAGAAAATAATGAATG+GGG + chr1_4:51148476-51148495 None:intergenic 25.0%
! AAATCGAAAAAACGAAGAAA+GGG + chr1_4:51148809-51148828 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG + chr1_4:51148810-51148829 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_4:51148828-51148847 Msa0168500:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_4:51148829-51148848 Msa0168500:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_4:51148940-51148959 Msa0168500:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_4:51148941-51148960 Msa0168500:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_4:51149002-51149021 None:intergenic 25.0%
!! TTTTTCGTACATGATTTTTC+TGG - chr1_4:51149170-51149189 Msa0168500:intron 25.0%
! ATCTTTACACTAATAGTGTT+TGG - chr1_4:51149506-51149525 Msa0168500:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG - chr1_4:51149568-51149587 Msa0168500:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG + chr1_4:51149645-51149664 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG + chr1_4:51149646-51149665 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_4:51150008-51150027 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_4:51150041-51150060 Msa0168500:CDS 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_4:51150042-51150061 Msa0168500:CDS 25.0%
! CGAAAAGAAAATAATGAATG+GGG + chr1_4:51148476-51148495 None:intergenic 25.0%
! AAATCGAAAAAACGAAGAAA+GGG + chr1_4:51148809-51148828 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG + chr1_4:51148810-51148829 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_4:51148828-51148847 Msa0168500:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_4:51148829-51148848 Msa0168500:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_4:51148940-51148959 Msa0168500:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_4:51148941-51148960 Msa0168500:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_4:51149002-51149021 None:intergenic 25.0%
!! TTTTTCGTACATGATTTTTC+TGG - chr1_4:51149170-51149189 Msa0168500:intron 25.0%
! ATCTTTACACTAATAGTGTT+TGG - chr1_4:51149506-51149525 Msa0168500:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG - chr1_4:51149568-51149587 Msa0168500:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG + chr1_4:51149645-51149664 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG + chr1_4:51149646-51149665 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_4:51150008-51150027 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_4:51150041-51150060 Msa0168500:CDS 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_4:51150042-51150061 Msa0168500:CDS 25.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_4:51148582-51148601 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_4:51148583-51148602 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_4:51148664-51148683 Msa0168500:three_prime_UTR 30.0%
AAACGAAGAAAGGGAAAAAA+GGG + chr1_4:51148800-51148819 None:intergenic 30.0%
AAAACGAAGAAAGGGAAAAA+AGG + chr1_4:51148801-51148820 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_4:51148866-51148885 Msa0168500:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_4:51148867-51148886 Msa0168500:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_4:51149003-51149022 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_4:51149090-51149109 Msa0168500:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_4:51149126-51149145 None:intergenic 30.0%
! TAGCAGAGAAGTAATTTTGT+TGG - chr1_4:51149333-51149352 Msa0168500:intron 30.0%
! AGCAGAGAAGTAATTTTGTT+GGG - chr1_4:51149334-51149353 Msa0168500:intron 30.0%
!! CAGTTGTCCTTTTATTTAAC+CGG - chr1_4:51149533-51149552 Msa0168500:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_4:51149587-51149606 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG - chr1_4:51149690-51149709 Msa0168500:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_4:51149850-51149869 Msa0168500:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_4:51150132-51150151 Msa0168500:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_4:51150148-51150167 Msa0168500:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_4:51150198-51150217 Msa0168500:intron 30.0%
! CTGTGATTTGTAGTCTTTAT+TGG - chr1_4:51150251-51150270 Msa0168500:five_prime_UTR 30.0%
CAAAACAAACAAAACAAGCA+GGG + chr1_4:51150286-51150305 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG + chr1_4:51150287-51150306 None:intergenic 30.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_4:51148582-51148601 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_4:51148583-51148602 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_4:51148664-51148683 Msa0168500:three_prime_UTR 30.0%
AAACGAAGAAAGGGAAAAAA+GGG + chr1_4:51148800-51148819 None:intergenic 30.0%
AAAACGAAGAAAGGGAAAAA+AGG + chr1_4:51148801-51148820 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_4:51148866-51148885 Msa0168500:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_4:51148867-51148886 Msa0168500:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_4:51149003-51149022 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_4:51149090-51149109 Msa0168500:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_4:51149126-51149145 None:intergenic 30.0%
! TAGCAGAGAAGTAATTTTGT+TGG - chr1_4:51149333-51149352 Msa0168500:intron 30.0%
! AGCAGAGAAGTAATTTTGTT+GGG - chr1_4:51149334-51149353 Msa0168500:intron 30.0%
!! CAGTTGTCCTTTTATTTAAC+CGG - chr1_4:51149533-51149552 Msa0168500:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_4:51149587-51149606 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG - chr1_4:51149690-51149709 Msa0168500:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_4:51149850-51149869 Msa0168500:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_4:51150132-51150151 Msa0168500:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_4:51150148-51150167 Msa0168500:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_4:51150198-51150217 Msa0168500:intron 30.0%
! CTGTGATTTGTAGTCTTTAT+TGG - chr1_4:51150251-51150270 Msa0168500:five_prime_UTR 30.0%
CAAAACAAACAAAACAAGCA+GGG + chr1_4:51150286-51150305 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG + chr1_4:51150287-51150306 None:intergenic 30.0%
GAAAAGTAGAAGAGAAACCT+TGG + chr1_4:51148560-51148579 None:intergenic 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_4:51149096-51149115 Msa0168500:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_4:51149097-51149116 Msa0168500:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_4:51149127-51149146 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_4:51149555-51149574 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_4:51149923-51149942 Msa0168500:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_4:51149936-51149955 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_4:51149982-51150001 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_4:51149990-51150009 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_4:51150018-51150037 Msa0168500:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_4:51150087-51150106 Msa0168500:CDS 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_4:51150135-51150154 Msa0168500:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_4:51150156-51150175 Msa0168500:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_4:51150160-51150179 Msa0168500:intron 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG - chr1_4:51150296-51150315 Msa0168500:five_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG - chr1_4:51150301-51150320 Msa0168500:five_prime_UTR 35.0%
GAAAAGTAGAAGAGAAACCT+TGG + chr1_4:51148560-51148579 None:intergenic 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_4:51149096-51149115 Msa0168500:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_4:51149097-51149116 Msa0168500:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_4:51149127-51149146 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_4:51149555-51149574 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_4:51149923-51149942 Msa0168500:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_4:51149936-51149955 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_4:51149982-51150001 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_4:51149990-51150009 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_4:51150018-51150037 Msa0168500:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_4:51150087-51150106 Msa0168500:CDS 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_4:51150135-51150154 Msa0168500:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_4:51150156-51150175 Msa0168500:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_4:51150160-51150179 Msa0168500:intron 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG - chr1_4:51150296-51150315 Msa0168500:five_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG - chr1_4:51150301-51150320 Msa0168500:five_prime_UTR 35.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_4:51148650-51148669 Msa0168500:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_4:51148674-51148693 Msa0168500:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_4:51148841-51148860 Msa0168500:CDS 40.0%
TAGTTTCCAGATACCCATCT+AGG - chr1_4:51148986-51149005 Msa0168500:CDS 40.0%
AGTTTCCAGATACCCATCTA+GGG - chr1_4:51148987-51149006 Msa0168500:CDS 40.0%
TTAAACCCTAGATGGGTATC+TGG + chr1_4:51148995-51149014 None:intergenic 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG - chr1_4:51149109-51149128 Msa0168500:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG - chr1_4:51149110-51149129 Msa0168500:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG + chr1_4:51149543-51149562 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_4:51149749-51149768 Msa0168500:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_4:51149793-51149812 Msa0168500:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_4:51149858-51149877 Msa0168500:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_4:51149922-51149941 Msa0168500:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_4:51149937-51149956 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_4:51149935-51149954 Msa0168500:intron 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_4:51150021-51150040 Msa0168500:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_4:51150086-51150105 Msa0168500:CDS 40.0%
AACAAACAAAACAAGCAGGG+AGG + chr1_4:51150283-51150302 None:intergenic 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG - chr1_4:51150300-51150319 Msa0168500:five_prime_UTR 40.0%
TTTGATCTGTGCAATGGTTG+GGG - chr1_4:51150302-51150321 Msa0168500:five_prime_UTR 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_4:51148650-51148669 Msa0168500:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_4:51148674-51148693 Msa0168500:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_4:51148841-51148860 Msa0168500:CDS 40.0%
TAGTTTCCAGATACCCATCT+AGG - chr1_4:51148986-51149005 Msa0168500:CDS 40.0%
AGTTTCCAGATACCCATCTA+GGG - chr1_4:51148987-51149006 Msa0168500:CDS 40.0%
TTAAACCCTAGATGGGTATC+TGG + chr1_4:51148995-51149014 None:intergenic 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG - chr1_4:51149109-51149128 Msa0168500:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG - chr1_4:51149110-51149129 Msa0168500:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG + chr1_4:51149543-51149562 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_4:51149749-51149768 Msa0168500:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_4:51149793-51149812 Msa0168500:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_4:51149858-51149877 Msa0168500:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_4:51149922-51149941 Msa0168500:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_4:51149937-51149956 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_4:51149935-51149954 Msa0168500:intron 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_4:51150021-51150040 Msa0168500:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_4:51150086-51150105 Msa0168500:CDS 40.0%
AACAAACAAAACAAGCAGGG+AGG + chr1_4:51150283-51150302 None:intergenic 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG - chr1_4:51150300-51150319 Msa0168500:five_prime_UTR 40.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_4:51148640-51148659 Msa0168500:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_4:51148668-51148687 Msa0168500:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_4:51148677-51148696 Msa0168500:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_4:51148683-51148702 Msa0168500:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_4:51148769-51148788 Msa0168500:exon 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG - chr1_4:51149111-51149130 Msa0168500:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG - chr1_4:51149112-51149131 Msa0168500:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_4:51149706-51149725 Msa0168500:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_4:51149707-51149726 Msa0168500:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_4:51149781-51149800 Msa0168500:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_4:51149810-51149829 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_4:51149870-51149889 Msa0168500:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_4:51149890-51149909 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_4:51149892-51149911 Msa0168500:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_4:51149893-51149912 Msa0168500:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_4:51149938-51149957 Msa0168500:intron 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_4:51149974-51149993 None:intergenic 45.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_4:51148640-51148659 Msa0168500:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_4:51148668-51148687 Msa0168500:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_4:51148677-51148696 Msa0168500:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_4:51148683-51148702 Msa0168500:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_4:51148769-51148788 Msa0168500:exon 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG - chr1_4:51149111-51149130 Msa0168500:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG - chr1_4:51149112-51149131 Msa0168500:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_4:51149706-51149725 Msa0168500:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_4:51149707-51149726 Msa0168500:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_4:51149781-51149800 Msa0168500:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_4:51149810-51149829 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_4:51149870-51149889 Msa0168500:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_4:51149890-51149909 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_4:51149892-51149911 Msa0168500:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_4:51149893-51149912 Msa0168500:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_4:51149938-51149957 Msa0168500:intron 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_4:51149974-51149993 None:intergenic 45.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_4:51148540-51148559 Msa0168500:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_4:51148729-51148748 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_4:51148761-51148780 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_4:51148762-51148781 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_4:51148761-51148780 Msa0168500:three_prime_UTR 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_4:51149711-51149730 Msa0168500:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_4:51149739-51149758 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_4:51149758-51149777 Msa0168500:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_4:51149823-51149842 Msa0168500:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_4:51149891-51149910 Msa0168500:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_4:51149941-51149960 Msa0168500:intron 50.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_4:51148540-51148559 Msa0168500:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_4:51148729-51148748 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_4:51148761-51148780 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_4:51148762-51148781 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_4:51148761-51148780 Msa0168500:three_prime_UTR 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_4:51149711-51149730 Msa0168500:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_4:51149739-51149758 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_4:51149758-51149777 Msa0168500:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_4:51149823-51149842 Msa0168500:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_4:51149891-51149910 Msa0168500:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_4:51149941-51149960 Msa0168500:intron 50.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_4:51148726-51148745 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_4:51148724-51148743 Msa0168500:three_prime_UTR 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_4:51149725-51149744 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_4:51149763-51149782 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_4:51149827-51149846 Msa0168500:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_4:51149901-51149920 Msa0168500:intron 55.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_4:51148726-51148745 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_4:51148724-51148743 Msa0168500:three_prime_UTR 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_4:51149725-51149744 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_4:51149763-51149782 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_4:51149827-51149846 Msa0168500:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_4:51149901-51149920 Msa0168500:intron 55.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_4:51148709-51148728 Msa0168500:three_prime_UTR 60.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_4:51148709-51148728 Msa0168500:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51148472 51150324 51148472 ID=Msa0168500;Name=Msa0168500
chr1_4 mRNA 51148472 51150324 51148472 ID=Msa0168500-mRNA-1;Parent=Msa0168500;Name=Msa0168500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=101|1|1|1|0.5|0.33|3|309|134
chr1_4 exon 51148472 51149077 51148472 ID=Msa0168500-mRNA-1:exon:15047;Parent=Msa0168500-mRNA-1
chr1_4 exon 51150006 51150124 51150006 ID=Msa0168500-mRNA-1:exon:15046;Parent=Msa0168500-mRNA-1
chr1_4 exon 51150235 51150324 51150235 ID=Msa0168500-mRNA-1:exon:15045;Parent=Msa0168500-mRNA-1
chr1_4 five_prime_UTR 51150235 51150324 51150235 ID=Msa0168500-mRNA-1:five_prime_utr;Parent=Msa0168500-mRNA-1
chr1_4 five_prime_UTR 51150114 51150124 51150114 ID=Msa0168500-mRNA-1:five_prime_utr;Parent=Msa0168500-mRNA-1
chr1_4 CDS 51150006 51150113 51150006 ID=Msa0168500-mRNA-1:cds;Parent=Msa0168500-mRNA-1
chr1_4 CDS 51148781 51149077 51148781 ID=Msa0168500-mRNA-1:cds;Parent=Msa0168500-mRNA-1
chr1_4 three_prime_UTR 51148472 51148780 51148472 ID=Msa0168500-mRNA-1:three_prime_utr;Parent=Msa0168500-mRNA-1
Gene Sequence

>Msa0168500

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>Msa0168500

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*