AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034870 MtrunA17_Chr1g0197171 95.695 302 6 2 1 302 1 295 0.0 598
Msa0034870 MtrunA17_Chr2g0290991 68.615 325 67 6 1 302 1 313 5.74e-150 422
Msa0034870 MtrunA17_Chr8g0356501 51.176 170 70 4 28 193 14 174 1.95e-46 159
Msa0034870 MtrunA17_Chr2g0310011 57.534 146 50 3 40 182 24 160 2.64e-44 154
Msa0034870 MtrunA17_Chr5g0409731 52.980 151 63 4 44 188 18 166 3.65e-43 149
Msa0034870 MtrunA17_Chr6g0461641 39.594 197 111 3 26 214 17 213 2.63e-39 142
Msa0034870 MtrunA17_Chr5g0417521 50.704 142 67 1 44 182 8 149 2.89e-39 141
Msa0034870 MtrunA17_Chr4g0042451 48.718 156 71 4 44 193 10 162 4.00e-39 140
Msa0034870 MtrunA17_Chr7g0254981 48.252 143 52 2 51 185 50 178 8.50e-39 137
Msa0034870 MtrunA17_Chr2g0321461 41.270 189 99 4 38 214 32 220 6.68e-38 138
Msa0034870 MtrunA17_Chr2g0291021 47.059 136 63 2 51 185 49 176 6.58e-33 123
Msa0034870 MtrunA17_Chr7g0261911 33.203 256 138 9 30 274 246 479 1.68e-32 125
Msa0034870 MtrunA17_Chr1g0190301 33.690 187 111 3 3 185 123 300 1.56e-28 113
Msa0034870 MtrunA17_Chr7g0274471 38.889 144 79 1 51 194 218 352 8.59e-28 111
Msa0034870 MtrunA17_Chr1g0175091 35.882 170 84 4 51 216 258 406 2.66e-26 107
Msa0034870 MtrunA17_Chr7g0258551 36.646 161 81 4 51 205 212 357 7.18e-26 105
Msa0034870 MtrunA17_Chr7g0242521 35.366 164 79 4 51 201 13 162 5.41e-20 87.0
Msa0034870 MtrunA17_Chr7g0243081 60.714 56 22 0 52 107 72 127 5.15e-17 80.5
Msa0034870 MtrunA17_Chr1g0175071 32.877 146 95 3 37 180 163 307 1.13e-16 79.0
Msa0034870 MtrunA17_Chr1g0175081 54.545 55 25 0 53 107 24 78 3.70e-16 72.8
Msa0034870 MtrunA17_Chr6g0479431 58.333 60 25 0 52 111 203 262 6.65e-16 77.4
Msa0034870 MtrunA17_Chr2g0288601 66.000 50 17 0 52 101 72 121 7.95e-16 72.8
Msa0034870 MtrunA17_Chr1g0154261 60.000 60 24 0 52 111 127 186 9.45e-16 76.3
Msa0034870 MtrunA17_Chr1g0210911 46.988 83 29 2 52 119 23 105 9.96e-16 76.6
Msa0034870 MtrunA17_Chr3g0095611 61.111 54 21 0 51 104 19 72 1.10e-15 74.3
Msa0034870 MtrunA17_Chr2g0320231 60.714 56 22 0 52 107 98 153 1.10e-15 76.6
Msa0034870 MtrunA17_Chr8g0379121 56.452 62 25 1 52 111 112 173 1.34e-15 76.6
Msa0034870 MtrunA17_Chr3g0109981 54.930 71 31 1 52 121 275 345 1.79e-15 76.6
Msa0034870 MtrunA17_Chr8g0366281 62.500 56 21 0 52 107 174 229 1.85e-15 75.9
Msa0034870 MtrunA17_Chr1g0162931 62.264 53 20 0 52 104 19 71 3.22e-15 74.3
Msa0034870 MtrunA17_Chr5g0410741 58.333 60 25 0 52 111 220 279 4.67e-15 75.1
Msa0034870 MtrunA17_Chr5g0402631 58.621 58 24 0 48 105 211 268 1.94e-13 69.7
Msa0034870 MtrunA17_Chr7g0258531 34.028 144 89 2 51 188 213 356 3.79e-13 68.9
Msa0034870 MtrunA17_Chr4g0031961 60.000 55 21 1 51 105 131 184 7.79e-13 67.8
Msa0034870 MtrunA17_Chr4g0067981 60.000 55 21 1 51 105 215 268 1.74e-12 67.8
Msa0034870 MtrunA17_Chr1g0161431 58.182 55 22 1 51 105 200 253 2.00e-12 67.4
Msa0034870 MtrunA17_Chr1g0198601 58.182 55 23 0 51 105 211 265 2.27e-12 67.0
Msa0034870 MtrunA17_Chr7g0255711 60.000 55 21 1 51 105 91 144 2.56e-12 66.2
Msa0034870 MtrunA17_Chr2g0283951 48.438 64 32 1 52 115 90 152 2.83e-12 66.6
Msa0034870 MtrunA17_Chr7g0275401 55.556 54 23 1 51 104 192 244 3.16e-12 65.9
Msa0034870 MtrunA17_Chr2g0294911 54.237 59 26 1 47 105 207 264 4.56e-12 66.6
Msa0034870 MtrunA17_Chr1g0149841 55.932 59 25 1 47 105 187 244 7.42e-12 65.9
Msa0034870 MtrunA17_Chr4g0062921 58.182 55 23 0 51 105 235 289 8.93e-12 65.5
Msa0034870 MtrunA17_Chr4g0009901 52.542 59 27 1 47 105 164 221 9.48e-12 64.3
Msa0034870 MtrunA17_Chr2g0304841 49.153 59 29 1 47 105 209 266 1.93e-11 64.7
Msa0034870 MtrunA17_Chr4g0045361 56.364 55 24 0 51 105 274 328 2.30e-11 63.9
Msa0034870 MtrunA17_Chr3g0137101 45.122 82 35 2 51 123 198 278 2.38e-11 64.3
Msa0034870 MtrunA17_Chr5g0422621 54.545 55 25 0 51 105 198 252 7.83e-11 62.4
Msa0034870 MtrunA17_Chr4g0009981 55.556 54 23 1 51 104 116 168 9.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034870 AT3G24120.1 48.707 232 93 5 40 247 30 259 1.06e-64 206
Msa0034870 AT4G13640.1 48.889 225 95 4 41 246 27 250 1.11e-63 202
Msa0034870 AT3G24120.2 48.085 235 93 6 40 247 30 262 1.52e-62 200
Msa0034870 AT4G13640.2 48.246 228 95 5 41 246 27 253 1.25e-61 197
Msa0034870 AT1G79430.2 54.601 163 61 4 35 193 18 171 1.28e-47 163
Msa0034870 AT3G12730.1 51.282 156 58 4 44 190 16 162 1.95e-40 141
Msa0034870 AT1G69580.1 47.337 169 68 4 40 193 23 185 3.61e-40 143
Msa0034870 AT3G04030.3 36.842 266 132 8 9 248 3 258 1.06e-39 143
Msa0034870 AT1G69580.2 47.619 168 70 5 40 193 23 186 2.53e-39 141
Msa0034870 AT5G18240.1 37.447 235 115 6 38 248 32 258 2.17e-37 137
Msa0034870 AT5G18240.4 37.447 235 115 6 38 248 32 258 2.17e-37 137
Msa0034870 AT3G04030.2 36.090 266 133 9 9 248 3 257 8.07e-37 135
Msa0034870 AT5G18240.5 37.447 235 113 7 38 248 32 256 1.41e-35 132
Msa0034870 AT5G45580.2 43.275 171 79 5 44 200 16 182 3.37e-35 129
Msa0034870 AT5G45580.1 43.529 170 78 5 45 200 1 166 3.38e-35 128
Msa0034870 AT3G04030.1 35.714 266 129 9 9 248 3 252 3.71e-35 131
Msa0034870 AT2G01060.1 47.407 135 63 1 51 185 15 141 1.05e-34 127
Msa0034870 AT5G18240.2 36.170 235 112 7 38 248 32 252 7.29e-33 125
Msa0034870 AT5G18240.3 36.170 235 112 7 38 248 32 252 7.29e-33 125
Msa0034870 AT5G06800.2 41.481 135 74 1 51 185 192 321 9.86e-29 114
Msa0034870 AT3G13040.3 43.871 155 66 4 45 186 227 373 1.97e-28 114
Msa0034870 AT3G13040.1 43.871 155 66 4 45 186 227 373 1.97e-28 114
Msa0034870 AT3G13040.2 43.871 155 66 4 45 186 227 373 1.97e-28 114
Msa0034870 AT3G04450.4 39.241 158 81 4 38 191 187 333 2.32e-27 110
Msa0034870 AT3G04450.2 39.241 158 81 4 38 191 187 333 2.32e-27 110
Msa0034870 AT3G04450.1 39.241 158 81 4 38 191 227 373 3.02e-27 110
Msa0034870 AT5G06800.1 40.000 140 64 2 51 185 192 316 2.71e-26 107
Msa0034870 AT5G29000.1 38.356 146 80 2 51 194 188 325 1.85e-25 104
Msa0034870 AT5G29000.3 38.356 146 80 2 51 194 188 325 1.85e-25 104
Msa0034870 AT4G28610.1 40.441 136 71 2 51 185 225 351 2.28e-25 105
Msa0034870 AT5G29000.2 38.356 146 80 2 51 194 231 368 2.93e-25 104
Msa0034870 AT2G20400.2 39.706 136 72 2 51 185 231 357 2.44e-24 102
Msa0034870 AT2G06020.1 56.944 72 31 0 36 107 71 142 2.66e-24 100
Msa0034870 AT2G20400.1 40.441 136 70 3 51 185 231 356 1.50e-23 99.8
Msa0034870 AT1G79430.1 47.826 115 47 4 83 193 1 106 1.38e-20 90.1
Msa0034870 AT5G06800.3 61.404 57 22 0 51 107 192 248 4.53e-19 85.5
Msa0034870 AT3G04450.3 48.276 87 39 2 38 124 227 307 4.96e-19 85.9
Msa0034870 AT5G29000.4 59.649 57 23 0 51 107 231 287 5.22e-18 83.2
Msa0034870 AT4G04605.1 62.264 53 20 0 52 104 15 67 1.24e-17 80.5
Msa0034870 AT2G42660.1 62.500 56 21 0 52 107 51 106 5.81e-17 79.3
Msa0034870 AT3G04030.5 35.417 192 88 8 83 248 1 182 7.09e-17 80.1
Msa0034870 AT2G02060.2 61.017 59 23 0 50 108 28 86 7.34e-17 79.0
Msa0034870 AT2G02060.1 61.017 59 23 0 50 108 28 86 7.34e-17 79.0
Msa0034870 AT1G14600.1 63.636 55 20 0 50 104 22 76 1.03e-16 78.6
Msa0034870 AT2G38300.1 62.500 56 21 0 52 107 55 110 2.58e-16 78.6
Msa0034870 AT1G32240.2 43.519 108 61 0 25 132 187 294 3.50e-16 78.6
Msa0034870 AT1G32240.1 43.519 108 61 0 25 132 187 294 4.29e-16 78.6
Msa0034870 AT2G40260.1 60.714 56 22 0 52 107 83 138 1.66e-15 76.6
Msa0034870 AT5G16560.1 58.333 60 25 0 52 111 220 279 2.24e-15 76.3
Msa0034870 AT5G42630.2 58.333 60 25 0 52 111 106 165 2.69e-15 73.9
Msa0034870 AT5G42630.1 58.333 60 25 0 52 111 106 165 5.83e-15 73.9
Msa0034870 AT2G01060.2 40.000 100 52 1 86 185 1 92 1.05e-14 72.8
Msa0034870 AT4G17695.1 50.000 74 33 1 52 121 165 238 1.76e-14 73.2
Msa0034870 AT3G12730.2 41.026 117 51 5 83 190 1 108 6.06e-14 69.3
Msa0034870 AT3G10760.1 51.351 74 32 2 32 105 89 158 2.31e-13 70.1
Msa0034870 AT5G59570.2 60.000 55 21 1 51 105 141 194 4.48e-13 68.9
Msa0034870 AT5G59570.1 60.000 55 21 1 51 105 141 194 4.48e-13 68.9
Msa0034870 AT4G04580.1 47.143 70 34 2 41 108 3 71 5.01e-13 66.2
Msa0034870 AT3G46640.2 60.000 55 21 1 51 105 144 197 5.45e-13 68.9
Msa0034870 AT3G46640.1 60.000 55 21 1 51 105 144 197 5.45e-13 68.9
Msa0034870 AT3G46640.3 60.000 55 21 1 51 105 144 197 6.09e-13 68.6
Msa0034870 AT4G37180.1 58.491 53 22 0 53 105 212 264 8.30e-13 68.6
Msa0034870 AT4G37180.2 58.491 53 22 0 53 105 219 271 9.23e-13 68.6
Msa0034870 AT3G04030.4 33.854 192 85 9 83 248 1 176 1.04e-12 67.8
Msa0034870 AT1G49560.1 60.000 55 22 0 51 105 192 246 1.08e-12 68.2
Msa0034870 AT5G05090.1 60.000 55 21 1 51 105 81 134 1.92e-12 66.6
Msa0034870 AT3G16857.3 58.182 55 22 1 51 105 167 220 2.74e-12 67.4
Msa0034870 AT3G16857.2 58.182 55 22 1 51 105 237 290 3.15e-12 67.4
Msa0034870 AT3G16857.1 58.182 55 22 1 51 105 237 290 3.25e-12 67.4
Msa0034870 AT2G40970.1 60.000 55 21 1 51 105 105 158 3.90e-12 65.5
Msa0034870 AT3G25790.1 60.000 50 20 0 56 105 201 250 5.47e-12 66.2
Msa0034870 AT5G58080.1 46.914 81 34 3 51 123 194 273 5.61e-12 66.6
Msa0034870 AT4G04555.1 48.387 62 32 0 47 108 10 71 1.03e-11 61.2
Msa0034870 AT1G13300.1 56.364 55 24 0 51 105 181 235 1.76e-11 64.3
Msa0034870 AT2G03500.1 56.897 58 25 0 48 105 230 287 2.21e-11 64.7
Msa0034870 AT5G18240.6 30.000 190 95 7 83 248 1 176 5.00e-11 63.2
Msa0034870 AT5G44190.1 55.556 54 23 1 51 104 147 199 5.65e-11 63.2
Msa0034870 AT5G44190.2 55.556 54 23 1 51 104 147 199 7.37e-11 62.8
Msa0034870 AT1G25550.1 55.172 58 26 0 48 105 206 263 7.69e-11 62.4
Msa0034870 AT1G68670.1 56.364 55 24 0 51 105 215 269 8.77e-11 62.4

Find 92 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAACAAGACTTTGGTTT+TGG 0.220050 1_1:-62864474 None:intergenic
AAATGCTTAGTAGCTTAATT+TGG 0.222202 1_1:+62868353 Msa0034870:three_prime_UTR
TTAATGCCTCCTTGACTTCA+TGG 0.229322 1_1:-62867104 None:intergenic
CTGTTTCACTCCTAGTTTGT+AGG 0.277225 1_1:+62868237 Msa0034870:three_prime_UTR
CATCAGAAGCTGGTAACTTT+GGG 0.286915 1_1:-62866969 None:intergenic
GTCCAACGAAGACGAGGTTT+TGG 0.346766 1_1:-62864780 None:intergenic
TCATTTAAAGAGTCATCTTC+AGG 0.349057 1_1:+62866532 Msa0034870:CDS
CCTTGAGGCTGGAGAATATA+TGG 0.350192 1_1:-62867983 None:intergenic
ATGGTCCTCATGATCGCTTT+TGG 0.371640 1_1:-62866485 None:intergenic
TAAGCTGATGGGAATGTAAC+TGG 0.371910 1_1:+62868302 Msa0034870:three_prime_UTR
CTATTCCTTGAGGATTGACT+TGG 0.373628 1_1:-62868171 None:intergenic
GCATCAGAAGCTGGTAACTT+TGG 0.381430 1_1:-62866970 None:intergenic
CAACAACAACACTTCCTTCA+TGG 0.381627 1_1:-62864668 None:intergenic
AGGAAGTGTTGTTGTTGTTC+AGG 0.385482 1_1:+62864674 Msa0034870:CDS
CTCAAAGGATTGACACTAGA+AGG 0.392959 1_1:+62868049 Msa0034870:CDS
TTGATGTATTGCAGAAGTAT+AGG 0.393167 1_1:+62866646 Msa0034870:intron
GACAAAGAGGATGCTGGGCT+TGG 0.410829 1_1:+62868084 Msa0034870:CDS
TCACCACTTTCTCTTCCAAA+TGG 0.412073 1_1:+62864502 Msa0034870:five_prime_UTR
AGATGCAGAACGGAGGTATA+TGG 0.412526 1_1:+62867826 Msa0034870:CDS
CACCACTTTCTCTTCCAAAT+GGG 0.414805 1_1:+62864503 Msa0034870:five_prime_UTR
ATGTTGGCTGATCAATTTAT+CGG 0.420599 1_1:+62867872 Msa0034870:CDS
TGTCAAACCCTTGACATTCA+TGG 0.421899 1_1:-62866504 None:intergenic
GGACATGGAGATGACCCATT+TGG 0.425019 1_1:-62864517 None:intergenic
AGTACCGAGCTAGGTGGAAA+TGG 0.432099 1_1:+62867941 Msa0034870:CDS
AACAGTTAGCCCCTTGAGGC+TGG 0.437173 1_1:-62867994 None:intergenic
GGAGGCATTAAGAGCACAAA+TGG 0.440107 1_1:+62867116 Msa0034870:CDS
CCATGGTATCACCTTTGATC+TGG 0.443004 1_1:+62868110 Msa0034870:CDS
TACTCGTTTGCATCAGAAGC+TGG 0.451451 1_1:-62866979 None:intergenic
TGAGACTCTCAAGTGATGTT+AGG 0.457932 1_1:-62868030 None:intergenic
AATAGCAAGGTATGGAATGT+AGG 0.459706 1_1:+62868189 Msa0034870:CDS
TTTAATTAATCCTACAAACT+AGG 0.484029 1_1:-62868247 None:intergenic
TATAGGCTTGGTAAGCAAGC+TGG 0.484630 1_1:+62866663 Msa0034870:CDS
GTTGATGCTGTCACTCAACT+TGG 0.487312 1_1:+62864825 Msa0034870:CDS
TTTGACGAGGGATGCAAAGA+TGG 0.489601 1_1:+62866693 Msa0034870:CDS
TATACCTCCGTTCTGCATCT+TGG 0.490483 1_1:-62867823 None:intergenic
TTTCCACCTAGCTCGGTACT+TGG 0.492435 1_1:-62867938 None:intergenic
TAGTGGGACAAAGAGGATGC+TGG 0.498265 1_1:+62868078 Msa0034870:CDS
CATATATTCTCCAGCCTCAA+GGG 0.500577 1_1:+62867984 Msa0034870:CDS
AAGTGAAAAGAACAAGACTT+TGG 0.504304 1_1:-62864480 None:intergenic
CCATATATTCTCCAGCCTCA+AGG 0.515023 1_1:+62867983 Msa0034870:CDS
CCTCAAGGAATAGCAAGGTA+TGG 0.523268 1_1:+62868181 Msa0034870:CDS
ATCCAAAACCTCGTCTTCGT+TGG 0.525904 1_1:+62864778 Msa0034870:CDS
CATTCCATTTCCACCTAGCT+CGG 0.529297 1_1:-62867945 None:intergenic
CCTTCATGGTCATGACTATG+AGG 0.529329 1_1:-62864654 None:intergenic
AGTATTAGAGGAGAAAATGA+AGG 0.531843 1_1:-62864538 None:intergenic
GACCCATTTGGAAGAGAAAG+TGG 0.533364 1_1:-62864505 None:intergenic
CCATACCTTGCTATTCCTTG+AGG 0.535847 1_1:-62868181 None:intergenic
TGATGTTAGGCAACTTTCAG+TGG 0.544773 1_1:-62868017 None:intergenic
GATGCTGTCACTCAACTTGG+TGG 0.549084 1_1:+62864828 Msa0034870:CDS
CATCAGCTTAGATAAAAGAC+AGG 0.551223 1_1:-62868289 None:intergenic
GATGCTGGGCTTGGACTCCA+TGG 0.556025 1_1:+62868093 Msa0034870:CDS
AGAGGAGAAAATGAAGGACA+TGG 0.559575 1_1:-62864532 None:intergenic
GAACTACCAAGTACCGAGCT+AGG 0.561496 1_1:+62867932 Msa0034870:CDS
GAAACTAACATGAGAACTCA+AGG 0.562013 1_1:+62868136 Msa0034870:CDS
AGTGGGACAAAGAGGATGCT+GGG 0.566399 1_1:+62868079 Msa0034870:CDS
TATTCCTTGAGGATTGACTT+GGG 0.576040 1_1:-62868170 None:intergenic
TAGGTAGGACATTGTAAAGA+GGG 0.579450 1_1:+62868208 Msa0034870:exon
GTAGGTAGGACATTGTAAAG+AGG 0.582445 1_1:+62868207 Msa0034870:exon
TTAGTTTCACTCCAGATCAA+AGG 0.583008 1_1:-62868121 None:intergenic
ACATCACTTGAGAGTCTCAA+AGG 0.584426 1_1:+62868034 Msa0034870:CDS
AGCATCCTCTTTGTCCCACT+AGG 0.587029 1_1:-62868076 None:intergenic
CATGAGGACCATGAATGTCA+AGG 0.591196 1_1:+62866496 Msa0034870:CDS
TCATATCTTCTAGAAAGCCC+TGG 0.597094 1_1:+62866931 Msa0034870:CDS
ATATAGGGGCCATGAAGTCA+AGG 0.600134 1_1:+62867095 Msa0034870:intron
GCAAGGTATGGAATGTAGGT+AGG 0.601220 1_1:+62868193 Msa0034870:exon
ATCAGAAGCTGGTAACTTTG+GGG 0.602195 1_1:-62866968 None:intergenic
TAAGCTACATTTACTAGTGG+AGG 0.603652 1_1:+62867149 Msa0034870:CDS
ATGAGGACCATGAATGTCAA+GGG 0.610152 1_1:+62866497 Msa0034870:CDS
GTATTGCAGAAGTATAGGCT+TGG 0.612116 1_1:+62866651 Msa0034870:intron
GTGGAACAGTTAGCCCCTTG+AGG 0.612894 1_1:-62867998 None:intergenic
AAGTAAGCTACATTTACTAG+TGG 0.617641 1_1:+62867146 Msa0034870:CDS
CCACACCAAAAGCGATCATG+AGG 0.624758 1_1:+62866480 Msa0034870:CDS
TTAACCCAAGTCAATCCTCA+AGG 0.626775 1_1:+62868166 Msa0034870:CDS
TCAATCCTCAAGGAATAGCA+AGG 0.627368 1_1:+62868176 Msa0034870:CDS
CACTAGAAGGATCACCTAGT+GGG 0.627792 1_1:+62868062 Msa0034870:CDS
AGAGAGAGCGTGTAAGATGT+TGG 0.630995 1_1:+62867856 Msa0034870:CDS
GATCACCTAGTGGGACAAAG+AGG 0.632089 1_1:+62868071 Msa0034870:CDS
CATCAACAAAACGTTGGTGA+AGG 0.636840 1_1:-62864809 None:intergenic
CCTCATAGTCATGACCATGA+AGG 0.638338 1_1:+62864654 Msa0034870:CDS
ATATATTCTCCAGCCTCAAG+GGG 0.645538 1_1:+62867985 Msa0034870:CDS
CCAGATCAAAGGTGATACCA+TGG 0.651921 1_1:-62868110 None:intergenic
ATCACAGTAAAGCGTGACAG+TGG 0.652711 1_1:+62864431 Msa0034870:five_prime_UTR
TCAGAAGTGAGAACAAGACA+AGG 0.660603 1_1:-62864756 None:intergenic
CTTACACGCTCTCTCTAGCA+TGG 0.664799 1_1:-62867849 None:intergenic
TCAGTAGTCCAACGAAGACG+AGG 0.666354 1_1:-62864786 None:intergenic
AAATTCGCCAAGATGCAGAA+CGG 0.668751 1_1:+62867816 Msa0034870:CDS
ACACTAGAAGGATCACCTAG+TGG 0.682794 1_1:+62868061 Msa0034870:CDS
CTACCAAGTACCGAGCTAGG+TGG 0.694297 1_1:+62867935 Msa0034870:CDS
TGACAGCATCAACAAAACGT+TGG 0.700307 1_1:-62864815 None:intergenic
TTCGCCAAGATGCAGAACGG+AGG 0.705432 1_1:+62867819 Msa0034870:CDS
CAGAAGTGAGAACAAGACAA+GGG 0.729677 1_1:-62864755 None:intergenic
TAGGGGCCATGAAGTCAAGG+AGG 0.733476 1_1:+62867098 Msa0034870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGAAATTTTTTACT+AGG - chr1_1:62865689-62865708 None:intergenic 10.0%
!!! TGAAATTTTTATAGTATTAG+AGG - chr1_1:62864553-62864572 None:intergenic 15.0%
!! AATGAATAAATTAACCAAAT+GGG - chr1_1:62864926-62864945 None:intergenic 15.0%
!! AAATGAATAAATTAACCAAA+TGG - chr1_1:62864927-62864946 None:intergenic 15.0%
!!! TAATCATTTTTATTTCATCT+TGG + chr1_1:62865125-62865144 Msa0034870:intron 15.0%
!! AATTCACAAAACAAAAAAAT+GGG - chr1_1:62865559-62865578 None:intergenic 15.0%
!! TAATTCACAAAACAAAAAAA+TGG - chr1_1:62865560-62865579 None:intergenic 15.0%
!!! TTAAGTGAAACTTTATATTT+TGG - chr1_1:62865790-62865809 None:intergenic 15.0%
!! CAAAATCATTCAAATTTAAT+TGG + chr1_1:62865893-62865912 Msa0034870:intron 15.0%
!!! TTATTGACTCAATATAATTA+AGG + chr1_1:62865957-62865976 Msa0034870:intron 15.0%
!!! TATTGACTCAATATAATTAA+GGG + chr1_1:62865958-62865977 Msa0034870:intron 15.0%
!!! AGATCATTGAATTTTATTAT+AGG + chr1_1:62866169-62866188 Msa0034870:intron 15.0%
!!! GATCATTGAATTTTATTATA+GGG + chr1_1:62866170-62866189 Msa0034870:intron 15.0%
!! AAACTACCATAAAAAATAAA+AGG - chr1_1:62866245-62866264 None:intergenic 15.0%
!! TATTATGATGTGAATAATAT+AGG + chr1_1:62866351-62866370 Msa0034870:intron 15.0%
!! ATTTATCAATTTGAATTACA+TGG + chr1_1:62866719-62866738 Msa0034870:intron 15.0%
!!! TTTTTTTTTGTTTTTTTGGA+AGG + chr1_1:62866907-62866926 Msa0034870:intron 15.0%
!!! TTTTTTTTGTTTTTTTGGAA+GGG + chr1_1:62866908-62866927 Msa0034870:intron 15.0%
!!! TTATTTTAGACCAATTTAAT+TGG + chr1_1:62867221-62867240 Msa0034870:intron 15.0%
!!! ATTTAAGATACCAATTAAAT+TGG - chr1_1:62867234-62867253 None:intergenic 15.0%
!! AATATAACATTATAGAGTTA+GGG + chr1_1:62867284-62867303 Msa0034870:intron 15.0%
!! TGATTAATTATGAACTATTA+TGG + chr1_1:62867512-62867531 Msa0034870:intron 15.0%
!!! TTTCTTCTTTTTCTTTAACT+GGG + chr1_1:62864575-62864594 Msa0034870:five_prime_UTR 20.0%
!!! AACATGTTATTTTTCTTCTA+TGG - chr1_1:62864618-62864637 None:intergenic 20.0%
!!! AGAAAAATAACATGTTTTCT+AGG + chr1_1:62864622-62864641 Msa0034870:exon 20.0%
!!! CATAAATTTTGTTACTTTTC+TGG + chr1_1:62864889-62864908 Msa0034870:intron 20.0%
!! ATGAATAAATTAACCAAATG+GGG - chr1_1:62864925-62864944 None:intergenic 20.0%
!! TATCAATGTCAAACTAAAAA+TGG - chr1_1:62864957-62864976 None:intergenic 20.0%
!!! ATAAATGGTTTTTGTTTTTG+AGG + chr1_1:62864980-62864999 Msa0034870:intron 20.0%
!! CAAATAAATCTATCTAAGAA+AGG - chr1_1:62865494-62865513 None:intergenic 20.0%
!! ATTCACAAAACAAAAAAATG+GGG - chr1_1:62865558-62865577 None:intergenic 20.0%
!!! ACATTGCCTTTTATTTTTTA+TGG + chr1_1:62866236-62866255 Msa0034870:intron 20.0%
!! ATTGCACTAAATATTATAAC+TGG - chr1_1:62866585-62866604 None:intergenic 20.0%
!! TTTGTTTAATTATGTATCAC+TGG + chr1_1:62866769-62866788 Msa0034870:intron 20.0%
!! CAATATAACATTATAGAGTT+AGG + chr1_1:62867283-62867302 Msa0034870:intron 20.0%
!! GAAGTTAAGAATTATTATGT+TGG + chr1_1:62867711-62867730 Msa0034870:intron 20.0%
!! GTAGAAGTTAAGAATTATTA+TGG + chr1_1:62867769-62867788 Msa0034870:intron 20.0%
!! TTTAATTAATCCTACAAACT+AGG - chr1_1:62868250-62868269 None:intergenic 20.0%
!! CTTTCTTCTTTTTCTTTAAC+TGG + chr1_1:62864574-62864593 Msa0034870:five_prime_UTR 25.0%
! TTGACATTGATAGAGATAAA+TGG + chr1_1:62864965-62864984 Msa0034870:intron 25.0%
! TAGTGTAAATTATTGAAGCT+AGG + chr1_1:62865015-62865034 Msa0034870:intron 25.0%
! TAAATTATTGAAGCTAGGAA+AGG + chr1_1:62865020-62865039 Msa0034870:intron 25.0%
! TTTAAATTGTGTGAGATTTG+TGG + chr1_1:62865063-62865082 Msa0034870:intron 25.0%
! GTTTAACACAATTAGAATGT+GGG + chr1_1:62865306-62865325 Msa0034870:intron 25.0%
!!! AACTTTATATTTTGGTTGGT+TGG - chr1_1:62865782-62865801 None:intergenic 25.0%
!!! GTGAAACTTTATATTTTGGT+TGG - chr1_1:62865786-62865805 None:intergenic 25.0%
! ACTTAAAATACAAAACCTCA+AGG + chr1_1:62865804-62865823 Msa0034870:intron 25.0%
! GTGACATTAGAATTTGAAAA+GGG - chr1_1:62865834-62865853 None:intergenic 25.0%
! AGTGACATTAGAATTTGAAA+AGG - chr1_1:62865835-62865854 None:intergenic 25.0%
!!! AATTGGTTTTCCTCTAAAAT+TGG + chr1_1:62865910-62865929 Msa0034870:intron 25.0%
! ATAATCCAAAGTCCAAATTA+GGG + chr1_1:62865993-62866012 Msa0034870:intron 25.0%
!! TCCAAATTAGGGTTTTTAAA+CGG + chr1_1:62866004-62866023 Msa0034870:intron 25.0%
!! TTATTTTCTCACTTTATGGT+GGG + chr1_1:62866270-62866289 Msa0034870:intron 25.0%
!! TAAAATCCTTTTCAATAGAC+TGG + chr1_1:62866792-62866811 Msa0034870:intron 25.0%
!!! TGTTTGTAATTTTAACCTGT+TGG + chr1_1:62866842-62866861 Msa0034870:intron 25.0%
!! TAAGAATTTCATTGTTTCTC+TGG + chr1_1:62867000-62867019 Msa0034870:intron 25.0%
!!! TTCGATCATTTTTTGACAAT+AGG - chr1_1:62867312-62867331 None:intergenic 25.0%
! GTTATATAGATTCTGTAGTA+TGG + chr1_1:62867366-62867385 Msa0034870:intron 25.0%
!!! TTTTTTTTTACCGTAGTTTG+TGG + chr1_1:62867648-62867667 Msa0034870:intron 25.0%
!!! AGAATTATTATGTTGGTAAC+TGG + chr1_1:62867718-62867737 Msa0034870:intron 25.0%
!! AGCGATTGAATTTTCTTATT+AGG + chr1_1:62867742-62867761 Msa0034870:intron 25.0%
! AAGAATTATTATGGTATTGC+AGG + chr1_1:62867778-62867797 Msa0034870:intron 25.0%
!!! TTGGTAGTTCTTGAAATTTT+TGG - chr1_1:62867922-62867941 None:intergenic 25.0%
! AAATGCTTAGTAGCTTAATT+TGG + chr1_1:62868353-62868372 Msa0034870:three_prime_UTR 25.0%
!!! AAGAACAAGACTTTGGTTTT+GGG - chr1_1:62864476-62864495 None:intergenic 30.0%
!! AAAGAACAAGACTTTGGTTT+TGG - chr1_1:62864477-62864496 None:intergenic 30.0%
AAGTGAAAAGAACAAGACTT+TGG - chr1_1:62864483-62864502 None:intergenic 30.0%
AGTATTAGAGGAGAAAATGA+AGG - chr1_1:62864541-62864560 None:intergenic 30.0%
! TTCTTTTTCTTTAACTGGGT+TGG + chr1_1:62864579-62864598 Msa0034870:five_prime_UTR 30.0%
!! TGGTAAATTGCTGTTTGTTT+GGG + chr1_1:62865083-62865102 Msa0034870:intron 30.0%
TTGCGATTATGACAAATCTA+CGG + chr1_1:62865200-62865219 Msa0034870:intron 30.0%
TACCAAAAATGCACTTAAGA+AGG + chr1_1:62865226-62865245 Msa0034870:intron 30.0%
ACTAGTAAATACAACCTCAA+GGG + chr1_1:62865284-62865303 Msa0034870:intron 30.0%
GGTTTAACACAATTAGAATG+TGG + chr1_1:62865305-62865324 Msa0034870:intron 30.0%
CAAGTGCATAATTATTCACA+TGG - chr1_1:62865428-62865447 None:intergenic 30.0%
GATAGATTTATTTGTACCTC+TGG + chr1_1:62865500-62865519 Msa0034870:intron 30.0%
!!! TTGGTTTTTAGTGGAAAAAG+TGG - chr1_1:62865763-62865782 None:intergenic 30.0%
ACTTTGGATTATGACTGATT+TGG - chr1_1:62865985-62866004 None:intergenic 30.0%
CATAATCCAAAGTCCAAATT+AGG + chr1_1:62865992-62866011 Msa0034870:intron 30.0%
AAAAACCCTAATTTGGACTT+TGG - chr1_1:62866001-62866020 None:intergenic 30.0%
ACCGTTTAAAAACCCTAATT+TGG - chr1_1:62866008-62866027 None:intergenic 30.0%
TCATGCTAAGAAAATACCAA+AGG - chr1_1:62866034-62866053 None:intergenic 30.0%
! ATTTTCTTAGCATGATACCA+TGG + chr1_1:62866039-62866058 Msa0034870:intron 30.0%
AATACTAATAGCATTCTCCT+TGG - chr1_1:62866077-62866096 None:intergenic 30.0%
GATCTTCAGAAAAATTCTGA+AGG - chr1_1:62866154-62866173 None:intergenic 30.0%
!! ACGCTTATTTTCTCACTTTA+TGG + chr1_1:62866266-62866285 Msa0034870:intron 30.0%
!! CTTATTTTCTCACTTTATGG+TGG + chr1_1:62866269-62866288 Msa0034870:intron 30.0%
! TATTTTCTCACTTTATGGTG+GGG + chr1_1:62866271-62866290 Msa0034870:intron 30.0%
CCTCTCTAACTCTAATTATT+GGG + chr1_1:62866374-62866393 Msa0034870:intron 30.0%
CATTAGAAGAGTTTATCAGA+TGG - chr1_1:62866407-62866426 None:intergenic 30.0%
AACTCTTCTAATGCATCTAT+TGG + chr1_1:62866414-62866433 Msa0034870:intron 30.0%
TCATTTAAAGAGTCATCTTC+AGG + chr1_1:62866532-62866551 Msa0034870:CDS 30.0%
! TTGATGTATTGCAGAAGTAT+AGG + chr1_1:62866646-62866665 Msa0034870:intron 30.0%
! AAGTGTCATTCAGACATAAA+GGG - chr1_1:62867041-62867060 None:intergenic 30.0%
TGCAATCTCATGTCATATAT+AGG + chr1_1:62867079-62867098 Msa0034870:intron 30.0%
GCAATCTCATGTCATATATA+GGG + chr1_1:62867080-62867099 Msa0034870:intron 30.0%
CAATCTCATGTCATATATAG+GGG + chr1_1:62867081-62867100 Msa0034870:intron 30.0%
AAGTAAGCTACATTTACTAG+TGG + chr1_1:62867146-62867165 Msa0034870:CDS 30.0%
AAATGATCGAATCTCAACTT+AGG + chr1_1:62867321-62867340 Msa0034870:intron 30.0%
! TTTTTCTGTCTTTGGCAATT+GGG - chr1_1:62867414-62867433 None:intergenic 30.0%
TTGGTATTGTAAGTAGAATG+TGG + chr1_1:62867594-62867613 Msa0034870:intron 30.0%
TGGTATTGTAAGTAGAATGT+GGG + chr1_1:62867595-62867614 Msa0034870:intron 30.0%
! ATGTTGGCTGATCAATTTAT+CGG + chr1_1:62867872-62867891 Msa0034870:CDS 30.0%
! TGTCTTTTATCTAAGCTGAT+GGG + chr1_1:62868291-62868310 Msa0034870:three_prime_UTR 30.0%
GAAATGAGTTAGTTACTGGT+AGG - chr1_1:62864855-62864874 None:intergenic 35.0%
GAGAGAAATGAGTTAGTTAC+TGG - chr1_1:62864859-62864878 None:intergenic 35.0%
!! GTGGTAAATTGCTGTTTGTT+TGG + chr1_1:62865082-62865101 Msa0034870:intron 35.0%
TCTTGGATTTGTCAGAATCA+CGG + chr1_1:62865142-62865161 Msa0034870:intron 35.0%
! CACCTTCTTAAGTGCATTTT+TGG - chr1_1:62865231-62865250 None:intergenic 35.0%
CTTGAGGTTGTATTTACTAG+TGG - chr1_1:62865285-62865304 None:intergenic 35.0%
CACTAGTAAATACAACCTCA+AGG + chr1_1:62865283-62865302 Msa0034870:intron 35.0%
CTAATTGTGTTAAACCCTTG+AGG - chr1_1:62865301-62865320 None:intergenic 35.0%
TAACACAATTAGAATGTGGG+AGG + chr1_1:62865309-62865328 Msa0034870:intron 35.0%
GCTTACTATCCATGTACATA+TGG + chr1_1:62865462-62865481 Msa0034870:intron 35.0%
! TGGTAGCTAATGAGTGATTT+TGG + chr1_1:62865531-62865550 Msa0034870:intron 35.0%
ATGTCTTATCCCACTAAGTA+GGG - chr1_1:62865627-62865646 None:intergenic 35.0%
!!! TTTGGTTGGTTGGTTTTTAG+TGG - chr1_1:62865772-62865791 None:intergenic 35.0%
TTTGAAAAGGGTAAACCTTG+AGG - chr1_1:62865822-62865841 None:intergenic 35.0%
! AGCTGTTAGACCAATTTTAG+AGG - chr1_1:62865923-62865942 None:intergenic 35.0%
TTGAGTCAATAAAGTCTGTC+TGG - chr1_1:62865949-62865968 None:intergenic 35.0%
! GTTTTTAAACGGTACTCCTT+TGG + chr1_1:62866015-62866034 Msa0034870:intron 35.0%
! ATTTTCTCACTTTATGGTGG+GGG + chr1_1:62866272-62866291 Msa0034870:intron 35.0%
GCCTCTCTAACTCTAATTAT+TGG + chr1_1:62866373-62866392 Msa0034870:intron 35.0%
CCCAATAATTAGAGTTAGAG+AGG - chr1_1:62866377-62866396 None:intergenic 35.0%
TAGAAGAGTTTATCAGATGG+AGG - chr1_1:62866404-62866423 None:intergenic 35.0%
ATGCAACCAGTCTATTGAAA+AGG - chr1_1:62866801-62866820 None:intergenic 35.0%
! AACCTGTTGGTTATTGTCTA+TGG + chr1_1:62866855-62866874 Msa0034870:intron 35.0%
! CAAGTGTCATTCAGACATAA+AGG - chr1_1:62867042-62867061 None:intergenic 35.0%
TGAGATTGCAATTCTCAGTT+CGG - chr1_1:62867069-62867088 None:intergenic 35.0%
TAAGCTACATTTACTAGTGG+AGG + chr1_1:62867149-62867168 Msa0034870:CDS 35.0%
TATGGAAAGTAGATCAGAGA+AGG + chr1_1:62867384-62867403 Msa0034870:intron 35.0%
! CTTTTTCTGTCTTTGGCAAT+TGG - chr1_1:62867415-62867434 None:intergenic 35.0%
CAATTGCCAAAGACAGAAAA+AGG + chr1_1:62867413-62867432 Msa0034870:intron 35.0%
! CATTTGCCTTTTTCTGTCTT+TGG - chr1_1:62867422-62867441 None:intergenic 35.0%
TGTGAAGAGTTAGAGGTTAA+TGG + chr1_1:62867476-62867495 Msa0034870:intron 35.0%
! TGTTGTTTGATCTGTGTATC+CGG + chr1_1:62867535-62867554 Msa0034870:intron 35.0%
TCAATCATTGCTGTACAATC+AGG - chr1_1:62867621-62867640 None:intergenic 35.0%
TTAGTTTCACTCCAGATCAA+AGG - chr1_1:62868124-62868143 None:intergenic 35.0%
GAAACTAACATGAGAACTCA+AGG + chr1_1:62868136-62868155 Msa0034870:CDS 35.0%
! TATTCCTTGAGGATTGACTT+GGG - chr1_1:62868173-62868192 None:intergenic 35.0%
AATAGCAAGGTATGGAATGT+AGG + chr1_1:62868189-62868208 Msa0034870:CDS 35.0%
TAGGTAGGACATTGTAAAGA+GGG + chr1_1:62868208-62868227 Msa0034870:exon 35.0%
CATCAGCTTAGATAAAAGAC+AGG - chr1_1:62868292-62868311 None:intergenic 35.0%
! CTGTCTTTTATCTAAGCTGA+TGG + chr1_1:62868290-62868309 Msa0034870:three_prime_UTR 35.0%
TCACCACTTTCTCTTCCAAA+TGG + chr1_1:62864502-62864521 Msa0034870:five_prime_UTR 40.0%
CACCACTTTCTCTTCCAAAT+GGG + chr1_1:62864503-62864522 Msa0034870:five_prime_UTR 40.0%
AGAGGAGAAAATGAAGGACA+TGG - chr1_1:62864535-62864554 None:intergenic 40.0%
CAACAACAACACTTCCTTCA+TGG - chr1_1:62864671-62864690 None:intergenic 40.0%
!! AGGAAGTGTTGTTGTTGTTC+AGG + chr1_1:62864674-62864693 Msa0034870:CDS 40.0%
CAGAAGTGAGAACAAGACAA+GGG - chr1_1:62864758-62864777 None:intergenic 40.0%
TCAGAAGTGAGAACAAGACA+AGG - chr1_1:62864759-62864778 None:intergenic 40.0%
! CATCAACAAAACGTTGGTGA+AGG - chr1_1:62864812-62864831 None:intergenic 40.0%
TGACAGCATCAACAAAACGT+TGG - chr1_1:62864818-62864837 None:intergenic 40.0%
GTGATGTTGTAAAAGCTACG+AGG - chr1_1:62865172-62865191 None:intergenic 40.0%
ATTAGAATGTGGGAGGTTTG+AGG + chr1_1:62865316-62865335 Msa0034870:intron 40.0%
AGGACAGTACCATATGTACA+TGG - chr1_1:62865474-62865493 None:intergenic 40.0%
CATGTCTTATCCCACTAAGT+AGG - chr1_1:62865628-62865647 None:intergenic 40.0%
CAGGGGACTTAATAAGATCA+AGG - chr1_1:62866105-62866124 None:intergenic 40.0%
TGATCTTATTAAGTCCCCTG+TGG + chr1_1:62866105-62866124 Msa0034870:intron 40.0%
GATCTTATTAAGTCCCCTGT+GGG + chr1_1:62866106-62866125 Msa0034870:intron 40.0%
TTCAGTCCTCATAGCTTTCT+TGG + chr1_1:62866194-62866213 Msa0034870:intron 40.0%
ATGAGGACCATGAATGTCAA+GGG + chr1_1:62866497-62866516 Msa0034870:CDS 40.0%
TGTCAAACCCTTGACATTCA+TGG - chr1_1:62866507-62866526 None:intergenic 40.0%
! GTATTGCAGAAGTATAGGCT+TGG + chr1_1:62866651-62866670 Msa0034870:intron 40.0%
!! AGCTGGAAAAGATTTTGACG+AGG + chr1_1:62866680-62866699 Msa0034870:CDS 40.0%
!! GCTGGAAAAGATTTTGACGA+GGG + chr1_1:62866681-62866700 Msa0034870:CDS 40.0%
AGCCATAGACAATAACCAAC+AGG - chr1_1:62866860-62866879 None:intergenic 40.0%
! TCATATCTTCTAGAAAGCCC+TGG + chr1_1:62866931-62866950 Msa0034870:CDS 40.0%
ATCAGAAGCTGGTAACTTTG+GGG - chr1_1:62866971-62866990 None:intergenic 40.0%
CATCAGAAGCTGGTAACTTT+GGG - chr1_1:62866972-62866991 None:intergenic 40.0%
TTAATGCCTCCTTGACTTCA+TGG - chr1_1:62867107-62867126 None:intergenic 40.0%
TGATCGAATCTCAACTTAGG+TGG + chr1_1:62867324-62867343 Msa0034870:intron 40.0%
GAATCTCAACTTAGGTGGTT+TGG + chr1_1:62867329-62867348 Msa0034870:intron 40.0%
GTGAAACTGTGAAGAGTTAG+AGG + chr1_1:62867469-62867488 Msa0034870:intron 40.0%
CCAAGCATTATCCACTTGAT+GGG - chr1_1:62867561-62867580 None:intergenic 40.0%
!!! GCTTGGCTGTTTTTGTTGAT+TGG + chr1_1:62867575-62867594 Msa0034870:intron 40.0%
GAAGTCTATGCCACAAACTA+CGG - chr1_1:62867661-62867680 None:intergenic 40.0%
AAATTCGCCAAGATGCAGAA+CGG + chr1_1:62867816-62867835 Msa0034870:CDS 40.0%
CATATATTCTCCAGCCTCAA+GGG + chr1_1:62867984-62868003 Msa0034870:CDS 40.0%
ATATATTCTCCAGCCTCAAG+GGG + chr1_1:62867985-62868004 Msa0034870:CDS 40.0%
TGATGTTAGGCAACTTTCAG+TGG - chr1_1:62868020-62868039 None:intergenic 40.0%
TGAGACTCTCAAGTGATGTT+AGG - chr1_1:62868033-62868052 None:intergenic 40.0%
ACATCACTTGAGAGTCTCAA+AGG + chr1_1:62868034-62868053 Msa0034870:CDS 40.0%
CTCAAAGGATTGACACTAGA+AGG + chr1_1:62868049-62868068 Msa0034870:CDS 40.0%
TTAACCCAAGTCAATCCTCA+AGG + chr1_1:62868166-62868185 Msa0034870:CDS 40.0%
CTATTCCTTGAGGATTGACT+TGG - chr1_1:62868174-62868193 None:intergenic 40.0%
TCAATCCTCAAGGAATAGCA+AGG + chr1_1:62868176-62868195 Msa0034870:CDS 40.0%
GTAGGTAGGACATTGTAAAG+AGG + chr1_1:62868207-62868226 Msa0034870:exon 40.0%
! CTGTTTCACTCCTAGTTTGT+AGG + chr1_1:62868237-62868256 Msa0034870:three_prime_UTR 40.0%
TAAGCTGATGGGAATGTAAC+TGG + chr1_1:62868302-62868321 Msa0034870:three_prime_UTR 40.0%
ATCACAGTAAAGCGTGACAG+TGG + chr1_1:62864431-62864450 Msa0034870:five_prime_UTR 45.0%
GACCCATTTGGAAGAGAAAG+TGG - chr1_1:62864508-62864527 None:intergenic 45.0%
CCTTCATGGTCATGACTATG+AGG - chr1_1:62864657-62864676 None:intergenic 45.0%
CCTCATAGTCATGACCATGA+AGG + chr1_1:62864654-62864673 Msa0034870:CDS 45.0%
ATCCAAAACCTCGTCTTCGT+TGG + chr1_1:62864778-62864797 Msa0034870:CDS 45.0%
GTTGATGCTGTCACTCAACT+TGG + chr1_1:62864825-62864844 Msa0034870:CDS 45.0%
!!! TGGTTTTGATGCACCCCATT+TGG + chr1_1:62864909-62864928 Msa0034870:intron 45.0%
TTGTACCTCTGGTCTCTCTA+TGG + chr1_1:62865511-62865530 Msa0034870:intron 45.0%
TATAGCCGACCCTACTTAGT+GGG + chr1_1:62865615-62865634 Msa0034870:intron 45.0%
CTTATCCCACTAAGTAGGGT+CGG - chr1_1:62865623-62865642 None:intergenic 45.0%
GCTCAACCAAGAAAGCTATG+AGG - chr1_1:62866203-62866222 None:intergenic 45.0%
! ATGGTCCTCATGATCGCTTT+TGG - chr1_1:62866488-62866507 None:intergenic 45.0%
CATGAGGACCATGAATGTCA+AGG + chr1_1:62866496-62866515 Msa0034870:CDS 45.0%
! TATAGGCTTGGTAAGCAAGC+TGG + chr1_1:62866663-62866682 Msa0034870:CDS 45.0%
TTTGACGAGGGATGCAAAGA+TGG + chr1_1:62866693-62866712 Msa0034870:CDS 45.0%
! GGGATGAGTTTTCAGTACCA+GGG - chr1_1:62866951-62866970 None:intergenic 45.0%
GCATCAGAAGCTGGTAACTT+TGG - chr1_1:62866973-62866992 None:intergenic 45.0%
TACTCGTTTGCATCAGAAGC+TGG - chr1_1:62866982-62867001 None:intergenic 45.0%
ATATAGGGGCCATGAAGTCA+AGG + chr1_1:62867095-62867114 Msa0034870:intron 45.0%
!! GGAGGCATTAAGAGCACAAA+TGG + chr1_1:62867116-62867135 Msa0034870:CDS 45.0%
! TTAGGTGGTTTGGACATGTG+TGG + chr1_1:62867339-62867358 Msa0034870:intron 45.0%
CCCATCAAGTGGATAATGCT+TGG + chr1_1:62867558-62867577 Msa0034870:intron 45.0%
GCCAAGCATTATCCACTTGA+TGG - chr1_1:62867562-62867581 None:intergenic 45.0%
TATACCTCCGTTCTGCATCT+TGG - chr1_1:62867826-62867845 None:intergenic 45.0%
! AGATGCAGAACGGAGGTATA+TGG + chr1_1:62867826-62867845 Msa0034870:CDS 45.0%
! AGAGAGAGCGTGTAAGATGT+TGG + chr1_1:62867856-62867875 Msa0034870:CDS 45.0%
CATTCCATTTCCACCTAGCT+CGG - chr1_1:62867948-62867967 None:intergenic 45.0%
CCTTGAGGCTGGAGAATATA+TGG - chr1_1:62867986-62868005 None:intergenic 45.0%
CCATATATTCTCCAGCCTCA+AGG + chr1_1:62867983-62868002 Msa0034870:CDS 45.0%
ACACTAGAAGGATCACCTAG+TGG + chr1_1:62868061-62868080 Msa0034870:CDS 45.0%
CACTAGAAGGATCACCTAGT+GGG + chr1_1:62868062-62868081 Msa0034870:CDS 45.0%
CCAGATCAAAGGTGATACCA+TGG - chr1_1:62868113-62868132 None:intergenic 45.0%
CCATGGTATCACCTTTGATC+TGG + chr1_1:62868110-62868129 Msa0034870:CDS 45.0%
!! CCATACCTTGCTATTCCTTG+AGG - chr1_1:62868184-62868203 None:intergenic 45.0%
CCTCAAGGAATAGCAAGGTA+TGG + chr1_1:62868181-62868200 Msa0034870:CDS 45.0%
GCAAGGTATGGAATGTAGGT+AGG + chr1_1:62868193-62868212 Msa0034870:exon 45.0%
!!! TTTTTTTTTTTTTGTTTTTT+TGG + chr1_1:62866903-62866922 Msa0034870:intron 5.0%
GGACATGGAGATGACCCATT+TGG - chr1_1:62864520-62864539 None:intergenic 50.0%
! GTCCAACGAAGACGAGGTTT+TGG - chr1_1:62864783-62864802 None:intergenic 50.0%
TCAGTAGTCCAACGAAGACG+AGG - chr1_1:62864789-62864808 None:intergenic 50.0%
GATGCTGTCACTCAACTTGG+TGG + chr1_1:62864828-62864847 Msa0034870:CDS 50.0%
AGCTACCATAGAGAGACCAG+AGG - chr1_1:62865519-62865538 None:intergenic 50.0%
CTATAGCCGACCCTACTTAG+TGG + chr1_1:62865614-62865633 Msa0034870:intron 50.0%
CTTGGCTCAATCGTAGACCA+TGG - chr1_1:62866059-62866078 None:intergenic 50.0%
CATGGTCTACGATTGAGCCA+AGG + chr1_1:62866057-62866076 Msa0034870:intron 50.0%
ATTAAGTCCCCTGTGGGAGA+AGG + chr1_1:62866112-62866131 Msa0034870:intron 50.0%
TTAAGTCCCCTGTGGGAGAA+GGG + chr1_1:62866113-62866132 Msa0034870:intron 50.0%
TGAAGAACCCTTCTCCCACA+GGG - chr1_1:62866123-62866142 None:intergenic 50.0%
ATGAAGAACCCTTCTCCCAC+AGG - chr1_1:62866124-62866143 None:intergenic 50.0%
!! CCTCATGATCGCTTTTGGTG+TGG - chr1_1:62866483-62866502 None:intergenic 50.0%
CCACACCAAAAGCGATCATG+AGG + chr1_1:62866480-62866499 Msa0034870:CDS 50.0%
! GGGGATGAGTTTTCAGTACC+AGG - chr1_1:62866952-62866971 None:intergenic 50.0%
! GCATTATCCACTTGATGGGC+CGG - chr1_1:62867557-62867576 None:intergenic 50.0%
CTTACACGCTCTCTCTAGCA+TGG - chr1_1:62867852-62867871 None:intergenic 50.0%
!! GAACTACCAAGTACCGAGCT+AGG + chr1_1:62867932-62867951 Msa0034870:CDS 50.0%
TTTCCACCTAGCTCGGTACT+TGG - chr1_1:62867941-62867960 None:intergenic 50.0%
! AGTACCGAGCTAGGTGGAAA+TGG + chr1_1:62867941-62867960 Msa0034870:CDS 50.0%
GATCACCTAGTGGGACAAAG+AGG + chr1_1:62868071-62868090 Msa0034870:CDS 50.0%
AGCATCCTCTTTGTCCCACT+AGG - chr1_1:62868079-62868098 None:intergenic 50.0%
TAGTGGGACAAAGAGGATGC+TGG + chr1_1:62868078-62868097 Msa0034870:CDS 50.0%
AGTGGGACAAAGAGGATGCT+GGG + chr1_1:62868079-62868098 Msa0034870:CDS 50.0%
GAAGAACCCTTCTCCCACAG+GGG - chr1_1:62866122-62866141 None:intergenic 55.0%
TAGGGGCCATGAAGTCAAGG+AGG + chr1_1:62867098-62867117 Msa0034870:intron 55.0%
! GGTGGTTTGGACATGTGTGG+AGG + chr1_1:62867342-62867361 Msa0034870:intron 55.0%
TGTGTATCCGGCCCATCAAG+TGG + chr1_1:62867547-62867566 Msa0034870:intron 55.0%
TTCGCCAAGATGCAGAACGG+AGG + chr1_1:62867819-62867838 Msa0034870:CDS 55.0%
!! CTACCAAGTACCGAGCTAGG+TGG + chr1_1:62867935-62867954 Msa0034870:CDS 55.0%
AACAGTTAGCCCCTTGAGGC+TGG - chr1_1:62867997-62868016 None:intergenic 55.0%
GTGGAACAGTTAGCCCCTTG+AGG - chr1_1:62868001-62868020 None:intergenic 55.0%
GACAAAGAGGATGCTGGGCT+TGG + chr1_1:62868084-62868103 Msa0034870:CDS 55.0%
GATGCTGGGCTTGGACTCCA+TGG + chr1_1:62868093-62868112 Msa0034870:CDS 60.0%
CAGCAGCAGCAGCAGCAGCA+AGG - chr1_1:62864728-62864747 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62864417 62868398 62864417 ID=Msa0034870;Name=Msa0034870
chr1_1 mRNA 62864417 62868398 62864417 ID=Msa0034870-mRNA-1;Parent=Msa0034870;Name=Msa0034870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=216|1|1|1|1|1|6|188|302
chr1_1 exon 62864417 62864858 62864417 ID=Msa0034870-mRNA-1:exon:19906;Parent=Msa0034870-mRNA-1
chr1_1 exon 62866477 62866553 62866477 ID=Msa0034870-mRNA-1:exon:19907;Parent=Msa0034870-mRNA-1
chr1_1 exon 62866660 62866714 62866660 ID=Msa0034870-mRNA-1:exon:19908;Parent=Msa0034870-mRNA-1
chr1_1 exon 62866929 62866998 62866929 ID=Msa0034870-mRNA-1:exon:19909;Parent=Msa0034870-mRNA-1
chr1_1 exon 62867101 62867170 62867101 ID=Msa0034870-mRNA-1:exon:19910;Parent=Msa0034870-mRNA-1
chr1_1 exon 62867800 62868398 62867800 ID=Msa0034870-mRNA-1:exon:19911;Parent=Msa0034870-mRNA-1
chr1_1 five_prime_UTR 62864417 62864632 62864417 ID=Msa0034870-mRNA-1:five_prime_utr;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62864633 62864858 62864633 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62866477 62866553 62866477 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62866660 62866714 62866660 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62866929 62866998 62866929 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62867101 62867170 62867101 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 CDS 62867800 62868210 62867800 ID=Msa0034870-mRNA-1:cds;Parent=Msa0034870-mRNA-1
chr1_1 three_prime_UTR 62868211 62868398 62868211 ID=Msa0034870-mRNA-1:three_prime_utr;Parent=Msa0034870-mRNA-1
Gene Sequence

>Msa0034870

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGCTGCTGCTGCTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTACCAAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAAGCTGGAAAAGATTTTGACGAGGGATGCAAAGATGGGTCATATCTTCTAGAAAGCCCTGGTACTGAAAACTCATCCCCAAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGGTATATGGCCATGCTAGAGAGAGCGTGTAAGATGTTGGCTGATCAATTTATCGGTGATACAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACCGAGCTAGGTGGAAATGGAATGCATGTTTCAGAAATACCATATATTCTCCAGCCTCAAGGGGCTAACTGTTCCACTGAAAGTTGCCTAACATCACTTGAGAGTCTCAAAGGATTGACACTAGAAGGATCACCTAGTGGGACAAAGAGGATGCTGGGCTTGGACTCCATGGTATCACCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAACCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG
Protein sequence

>Msa0034870

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAAAAAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSTELGGNGMHVSEIPYILQPQGANCSTESCLTSLESLKGLTLEGSPSGTKRMLGLDSMVSPLIWSETNMRTQGIHLTQVNPQGIARYGM*