AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175780 MtrunA17_Chr1g0197171 95.017 301 7 3 1 299 1 295 0.0 587
Msa0175780 MtrunA17_Chr2g0290991 68.519 324 66 7 1 299 1 313 1.73e-147 416
Msa0175780 MtrunA17_Chr8g0356501 50.575 174 73 4 35 204 22 186 9.34e-47 160
Msa0175780 MtrunA17_Chr2g0310011 54.140 157 60 3 28 181 13 160 4.65e-45 155
Msa0175780 MtrunA17_Chr5g0409731 52.980 151 63 4 43 187 18 166 2.92e-43 150
Msa0175780 MtrunA17_Chr5g0417521 50.704 142 67 1 43 181 8 149 2.45e-39 141
Msa0175780 MtrunA17_Chr4g0042451 48.718 156 71 4 43 192 10 162 3.57e-39 140
Msa0175780 MtrunA17_Chr7g0254981 45.223 157 64 2 50 198 50 192 5.89e-39 138
Msa0175780 MtrunA17_Chr2g0321461 40.838 191 101 4 29 207 24 214 6.17e-39 140
Msa0175780 MtrunA17_Chr6g0461641 41.618 173 93 3 43 207 35 207 2.75e-37 136
Msa0175780 MtrunA17_Chr7g0261911 36.170 235 120 8 50 271 262 479 5.11e-33 126
Msa0175780 MtrunA17_Chr2g0291021 47.059 136 63 2 50 184 49 176 5.86e-33 123
Msa0175780 MtrunA17_Chr1g0190301 40.559 143 76 2 42 184 167 300 2.81e-28 112
Msa0175780 MtrunA17_Chr7g0274471 38.889 144 79 1 50 193 218 352 8.03e-28 111
Msa0175780 MtrunA17_Chr1g0175091 40.288 139 64 3 50 184 258 381 2.89e-26 107
Msa0175780 MtrunA17_Chr7g0258551 36.646 161 79 5 50 202 212 357 1.12e-24 102
Msa0175780 MtrunA17_Chr7g0242521 37.681 138 73 2 50 184 13 140 2.15e-19 85.1
Msa0175780 MtrunA17_Chr7g0243081 60.714 56 22 0 51 106 72 127 5.52e-17 80.1
Msa0175780 MtrunA17_Chr1g0175071 32.877 146 95 3 36 179 163 307 1.07e-16 79.0
Msa0175780 MtrunA17_Chr1g0175081 54.545 55 25 0 52 106 24 78 3.72e-16 72.8
Msa0175780 MtrunA17_Chr6g0479431 58.333 60 25 0 51 110 203 262 6.68e-16 77.0
Msa0175780 MtrunA17_Chr2g0288601 66.000 50 17 0 51 100 72 121 7.37e-16 72.8
Msa0175780 MtrunA17_Chr1g0154261 60.000 60 24 0 51 110 127 186 9.16e-16 76.3
Msa0175780 MtrunA17_Chr1g0210911 46.988 83 29 2 51 118 23 105 9.84e-16 76.3
Msa0175780 MtrunA17_Chr3g0095611 61.111 54 21 0 50 103 19 72 1.06e-15 74.3
Msa0175780 MtrunA17_Chr2g0320231 60.714 56 22 0 51 106 98 153 1.30e-15 76.3
Msa0175780 MtrunA17_Chr8g0379121 56.452 62 25 1 51 110 112 173 1.33e-15 76.6
Msa0175780 MtrunA17_Chr3g0109981 54.930 71 31 1 51 120 275 345 1.68e-15 76.6
Msa0175780 MtrunA17_Chr8g0366281 62.500 56 21 0 51 106 174 229 1.83e-15 75.9
Msa0175780 MtrunA17_Chr1g0162931 62.264 53 20 0 51 103 19 71 3.31e-15 74.3
Msa0175780 MtrunA17_Chr5g0410741 58.333 60 25 0 51 110 220 279 4.61e-15 75.1
Msa0175780 MtrunA17_Chr5g0402631 58.621 58 24 0 47 104 211 268 2.17e-13 69.7
Msa0175780 MtrunA17_Chr7g0255711 50.667 75 33 2 30 104 74 144 3.35e-13 68.6
Msa0175780 MtrunA17_Chr7g0258531 34.028 144 89 2 50 187 213 356 4.32e-13 68.9
Msa0175780 MtrunA17_Chr4g0031961 60.000 55 21 1 50 104 131 184 7.97e-13 67.8
Msa0175780 MtrunA17_Chr4g0067981 60.000 55 21 1 50 104 215 268 1.73e-12 67.8
Msa0175780 MtrunA17_Chr1g0161431 58.182 55 22 1 50 104 200 253 2.18e-12 67.4
Msa0175780 MtrunA17_Chr1g0198601 58.182 55 23 0 50 104 211 265 2.21e-12 67.0
Msa0175780 MtrunA17_Chr2g0283951 48.438 64 32 1 51 114 90 152 3.14e-12 66.2
Msa0175780 MtrunA17_Chr7g0275401 55.556 54 23 1 50 103 192 244 3.18e-12 65.9
Msa0175780 MtrunA17_Chr2g0294911 54.237 59 26 1 46 104 207 264 4.77e-12 66.2
Msa0175780 MtrunA17_Chr1g0149841 55.932 59 25 1 46 104 187 244 7.99e-12 65.5
Msa0175780 MtrunA17_Chr4g0062921 58.182 55 23 0 50 104 235 289 9.63e-12 65.1
Msa0175780 MtrunA17_Chr4g0009901 52.542 59 27 1 46 104 164 221 1.08e-11 63.9
Msa0175780 MtrunA17_Chr2g0304841 49.153 59 29 1 46 104 209 266 1.96e-11 64.7
Msa0175780 MtrunA17_Chr4g0045361 56.364 55 24 0 50 104 274 328 2.31e-11 63.9
Msa0175780 MtrunA17_Chr3g0137101 45.122 82 35 2 50 122 198 278 2.54e-11 64.3
Msa0175780 MtrunA17_Chr5g0422621 54.545 55 25 0 50 104 198 252 7.95e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175780 AT3G24120.1 49.138 232 90 6 39 244 30 259 3.51e-64 204
Msa0175780 AT4G13640.1 48.889 225 93 5 40 243 27 250 2.91e-62 199
Msa0175780 AT3G24120.2 48.511 235 90 7 39 244 30 262 4.20e-62 199
Msa0175780 AT4G13640.2 48.246 228 93 6 40 243 27 253 3.81e-60 194
Msa0175780 AT1G79430.2 54.601 163 61 4 34 192 18 171 1.21e-47 163
Msa0175780 AT3G12730.1 51.282 156 58 4 43 189 16 162 1.76e-40 141
Msa0175780 AT1G69580.1 47.337 169 68 4 39 192 23 185 2.96e-40 143
Msa0175780 AT1G69580.2 47.619 168 70 5 39 192 23 186 1.97e-39 141
Msa0175780 AT3G04030.3 38.889 234 111 8 37 245 32 258 2.68e-38 139
Msa0175780 AT5G18240.1 36.481 233 118 6 37 245 32 258 3.32e-36 134
Msa0175780 AT5G18240.4 36.481 233 118 6 37 245 32 258 3.32e-36 134
Msa0175780 AT3G04030.2 38.034 234 112 9 37 245 32 257 2.23e-35 132
Msa0175780 AT5G45580.2 44.172 163 73 5 43 191 16 174 3.16e-35 129
Msa0175780 AT5G45580.1 44.444 162 72 5 44 191 1 158 3.95e-35 128
Msa0175780 AT2G01060.1 47.407 135 63 1 50 184 15 141 1.04e-34 127
Msa0175780 AT5G18240.5 36.481 233 116 7 37 245 32 256 2.30e-34 129
Msa0175780 AT3G04030.1 37.607 234 108 9 37 245 32 252 8.87e-34 127
Msa0175780 AT5G18240.2 35.193 233 115 7 37 245 32 252 7.68e-32 122
Msa0175780 AT5G18240.3 35.193 233 115 7 37 245 32 252 7.68e-32 122
Msa0175780 AT5G06800.2 41.481 135 74 1 50 184 192 321 9.98e-29 113
Msa0175780 AT3G13040.3 42.331 163 68 4 44 194 227 375 2.03e-28 114
Msa0175780 AT3G13040.1 42.331 163 68 4 44 194 227 375 2.03e-28 114
Msa0175780 AT3G13040.2 42.331 163 68 4 44 194 227 375 2.03e-28 114
Msa0175780 AT3G04450.4 37.278 169 91 4 26 190 176 333 4.04e-28 112
Msa0175780 AT3G04450.2 37.278 169 91 4 26 190 176 333 4.04e-28 112
Msa0175780 AT3G04450.1 37.278 169 91 4 26 190 216 373 6.80e-28 112
Msa0175780 AT5G06800.1 40.000 140 64 2 50 184 192 316 2.70e-26 107
Msa0175780 AT5G29000.1 38.356 146 80 2 50 193 188 325 1.51e-25 104
Msa0175780 AT5G29000.3 38.356 146 80 2 50 193 188 325 1.51e-25 104
Msa0175780 AT4G28610.1 37.267 161 90 3 50 208 225 376 1.96e-25 105
Msa0175780 AT5G29000.2 38.356 146 80 2 50 193 231 368 2.34e-25 105
Msa0175780 AT2G20400.2 39.706 136 72 2 50 184 231 357 2.21e-24 102
Msa0175780 AT2G06020.1 56.164 73 32 0 34 106 70 142 2.41e-24 100
Msa0175780 AT2G20400.1 40.441 136 70 3 50 184 231 356 1.25e-23 99.8
Msa0175780 AT1G79430.1 47.826 115 47 4 82 192 1 106 1.45e-20 89.7
Msa0175780 AT3G04450.3 43.878 98 49 2 26 123 216 307 1.17e-19 87.8
Msa0175780 AT5G06800.3 61.404 57 22 0 50 106 192 248 4.44e-19 85.5
Msa0175780 AT5G29000.4 59.649 57 23 0 50 106 231 287 5.08e-18 83.2
Msa0175780 AT4G04605.1 62.264 53 20 0 51 103 15 67 1.39e-17 80.1
Msa0175780 AT2G42660.1 62.500 56 21 0 51 106 51 106 5.91e-17 79.3
Msa0175780 AT2G02060.2 61.017 59 23 0 49 107 28 86 7.47e-17 79.0
Msa0175780 AT2G02060.1 61.017 59 23 0 49 107 28 86 7.47e-17 79.0
Msa0175780 AT1G14600.1 63.636 55 20 0 49 103 22 76 1.08e-16 78.6
Msa0175780 AT2G38300.1 62.500 56 21 0 51 106 55 110 2.91e-16 78.6
Msa0175780 AT1G32240.2 44.444 108 59 1 25 131 187 294 3.19e-16 78.6
Msa0175780 AT1G32240.1 44.444 108 59 1 25 131 187 294 4.64e-16 78.2
Msa0175780 AT2G40260.1 42.268 97 53 1 10 106 45 138 7.55e-16 77.8
Msa0175780 AT3G04030.5 33.862 189 93 8 82 245 1 182 7.67e-16 77.0
Msa0175780 AT5G16560.1 58.333 60 25 0 51 110 220 279 2.11e-15 76.3
Msa0175780 AT5G42630.2 58.333 60 25 0 51 110 106 165 2.67e-15 73.9
Msa0175780 AT5G42630.1 58.333 60 25 0 51 110 106 165 6.12e-15 73.9
Msa0175780 AT2G01060.2 40.000 100 52 1 85 184 1 92 1.09e-14 72.4
Msa0175780 AT4G17695.1 50.000 74 33 1 51 120 165 238 1.64e-14 73.2
Msa0175780 AT3G12730.2 41.026 117 51 5 82 189 1 108 6.74e-14 69.3
Msa0175780 AT5G59570.2 60.000 55 21 1 50 104 141 194 4.90e-13 68.6
Msa0175780 AT5G59570.1 60.000 55 21 1 50 104 141 194 4.90e-13 68.6
Msa0175780 AT4G04580.1 47.143 70 34 2 40 107 3 71 5.01e-13 66.2
Msa0175780 AT2G40970.1 49.333 75 34 2 30 104 88 158 5.69e-13 67.8
Msa0175780 AT3G46640.2 60.000 55 21 1 50 104 144 197 5.73e-13 68.6
Msa0175780 AT3G46640.1 60.000 55 21 1 50 104 144 197 5.73e-13 68.6
Msa0175780 AT3G46640.3 60.000 55 21 1 50 104 144 197 6.46e-13 68.6
Msa0175780 AT3G10760.1 51.389 72 31 2 33 104 91 158 8.74e-13 68.2
Msa0175780 AT4G37180.1 58.491 53 22 0 52 104 212 264 8.96e-13 68.2
Msa0175780 AT4G37180.2 58.491 53 22 0 52 104 219 271 9.07e-13 68.6
Msa0175780 AT1G49560.1 60.000 55 22 0 50 104 192 246 1.02e-12 68.2
Msa0175780 AT5G05090.1 60.000 55 21 1 50 104 81 134 1.96e-12 66.6
Msa0175780 AT3G16857.3 58.182 55 22 1 50 104 167 220 2.79e-12 67.4
Msa0175780 AT3G16857.2 58.182 55 22 1 50 104 237 290 3.02e-12 67.4
Msa0175780 AT3G16857.1 58.182 55 22 1 50 104 237 290 3.55e-12 67.4
Msa0175780 AT3G25790.1 60.000 50 20 0 55 104 201 250 5.49e-12 65.9
Msa0175780 AT5G58080.1 46.914 81 34 3 50 122 194 273 5.81e-12 66.6
Msa0175780 AT4G04555.1 48.387 62 32 0 46 107 10 71 1.01e-11 61.2
Msa0175780 AT3G04030.4 32.275 189 90 9 82 245 1 176 1.02e-11 65.1
Msa0175780 AT1G13300.1 56.364 55 24 0 50 104 181 235 1.89e-11 64.3
Msa0175780 AT2G03500.1 56.897 58 25 0 47 104 230 287 2.45e-11 64.3
Msa0175780 AT5G44190.1 55.556 54 23 1 50 103 147 199 6.05e-11 63.2
Msa0175780 AT5G44190.2 55.556 54 23 1 50 103 147 199 7.35e-11 62.8
Msa0175780 AT1G25550.1 55.172 58 26 0 47 104 206 263 7.74e-11 62.4
Msa0175780 AT1G68670.1 56.364 55 24 0 50 104 215 269 8.66e-11 62.4

Find 94 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAACAAGACTTTGGTTT+TGG 0.220050 1_4:-61899062 None:intergenic
TTAATGCCTCCTTGACTTCA+TGG 0.229322 1_4:-61901926 None:intergenic
ATTCACGAGGCACATAATTT+CGG 0.267802 1_4:+61903266 Msa0175780:three_prime_UTR
CATCAGAAGCTGGTAACTTT+GGG 0.286915 1_4:-61901791 None:intergenic
GTGTTTCACTCCTAGTTTGT+AGG 0.303734 1_4:+61903101 Msa0175780:three_prime_UTR
CAATTCCTTGAGGATTGACT+TGG 0.327561 1_4:-61903035 None:intergenic
GTCCAACGAAGACGAGGTTT+TGG 0.346766 1_4:-61899365 None:intergenic
TCATTTAAAGAGTCATCTTC+AGG 0.349057 1_4:+61901355 Msa0175780:CDS
CCTTGAGGCTGGAGAATATA+TGG 0.350192 1_4:-61902847 None:intergenic
ATGGTCCTCATGATAGCTTT+TGG 0.362198 1_4:-61901308 None:intergenic
AGAGGAGAAAATGAAGGAAA+TGG 0.371629 1_4:-61899120 None:intergenic
GCATCAGAAGCTGGTAACTT+TGG 0.381430 1_4:-61901792 None:intergenic
CAACAACAACACTTCCTTCA+TGG 0.381627 1_4:-61899256 None:intergenic
AGGAAGTGTTGTTGTTGTTC+AGG 0.385482 1_4:+61899262 Msa0175780:CDS
TGAGACTTTCAAGTGATGTT+AGG 0.385713 1_4:-61902894 None:intergenic
CTCAGAGGATTGACACTAGA+AGG 0.392959 1_4:+61902913 Msa0175780:CDS
TTTATGTATTGCAGAAGTAT+AGG 0.395607 1_4:+61901470 Msa0175780:intron
GTCAAAGAGGATGCTGGGCT+TGG 0.410169 1_4:+61902948 Msa0175780:CDS
TCACCACTTTCTCTTCCAAA+TGG 0.412073 1_4:+61899090 Msa0175780:five_prime_UTR
GGAAATGGAGATGACCCATT+TGG 0.413699 1_4:-61899105 None:intergenic
AGATGCAGAACGGAGATATA+TGG 0.414090 1_4:+61902696 Msa0175780:CDS
CACCACTTTCTCTTCCAAAT+GGG 0.414805 1_4:+61899091 Msa0175780:five_prime_UTR
TGTCAAACCCTTGACATTCA+TGG 0.421899 1_4:-61901327 None:intergenic
TCCTGTCTTGTCTAAGTCGA+TGG 0.429296 1_4:+61903154 Msa0175780:three_prime_UTR
AGTACCGAGCTAGGTGGAAA+TGG 0.432099 1_4:+61902805 Msa0175780:CDS
GGAGGCATTAAGAGCACAAA+TGG 0.440107 1_4:+61901938 Msa0175780:CDS
CCATGGTATCACCTTTGATC+TGG 0.443004 1_4:+61902974 Msa0175780:CDS
AGCAGTTAGCCCCTTGAGGC+TGG 0.448240 1_4:-61902858 None:intergenic
TACTCGTTTGCATCAGAAGC+TGG 0.451451 1_4:-61901801 None:intergenic
TAAGTCGATGGGAATAGATC+TGG 0.469290 1_4:+61903166 Msa0175780:three_prime_UTR
CTTAATTAATCCTACAAACT+AGG 0.474201 1_4:-61903111 None:intergenic
CCTCAAGGAATTGCAAGGTA+TGG 0.481514 1_4:+61903045 Msa0175780:CDS
TATATCTCCGTTCTGCATCT+TGG 0.482620 1_4:-61902693 None:intergenic
TATAGGCTTGGTAAGCAAGC+TGG 0.484630 1_4:+61901487 Msa0175780:CDS
GTTGATGCTGTCACTCAACT+TGG 0.487312 1_4:+61899410 Msa0175780:CDS
TTTGACGAGGGATGCAAAGA+TGG 0.489601 1_4:+61901517 Msa0175780:CDS
TAGTGGGTCAAAGAGGATGC+TGG 0.491447 1_4:+61902942 Msa0175780:CDS
TTTCCACCTAGCTCGGTACT+TGG 0.492435 1_4:-61902802 None:intergenic
AATTGCAAGGTATGGAATGT+AGG 0.494031 1_4:+61903053 Msa0175780:CDS
AAGTGAAAAGAACAAGACTT+TGG 0.504304 1_4:-61899068 None:intergenic
CATATATTCTCCAGCCTCAA+GGG 0.510954 1_4:+61902848 Msa0175780:CDS
CACCTAGCTCGGTACTTGGT+AGG 0.514136 1_4:-61902798 None:intergenic
CCATATATTCTCCAGCCTCA+AGG 0.515434 1_4:+61902847 Msa0175780:CDS
GAATTATATGATCGCATATG+TGG 0.517116 1_4:-61903247 None:intergenic
CCTGTCTTGTCTAAGTCGAT+GGG 0.521264 1_4:+61903155 Msa0175780:three_prime_UTR
AGTATTAGAGGAGAAAATGA+AGG 0.525023 1_4:-61899126 None:intergenic
ATCCAAAACCTCGTCTTCGT+TGG 0.525904 1_4:+61899363 Msa0175780:CDS
CATTCCATTTCCACCTAGCT+CGG 0.529297 1_4:-61902809 None:intergenic
CCTTCATGGTCATGACTATG+AGG 0.529329 1_4:-61899242 None:intergenic
GACCCATTTGGAAGAGAAAG+TGG 0.533364 1_4:-61899093 None:intergenic
TGATGTTAGGCAACTTTCTG+TGG 0.540828 1_4:-61902881 None:intergenic
GATGCTGTCACTCAACTTGG+TGG 0.549084 1_4:+61899413 Msa0175780:CDS
GATGCTGGGCTTGGACTCCA+TGG 0.556025 1_4:+61902957 Msa0175780:CDS
GTGGAGCAGTTAGCCCCTTG+AGG 0.556661 1_4:-61902862 None:intergenic
AGTGGGTCAAAGAGGATGCT+GGG 0.559368 1_4:+61902943 Msa0175780:CDS
GAAACTAACATGAGAACTCA+AGG 0.562013 1_4:+61903000 Msa0175780:CDS
CATGAGGACCATGAATGTCA+AGG 0.562630 1_4:+61901319 Msa0175780:CDS
CCATACCTTGCAATTCCTTG+AGG 0.577435 1_4:-61903045 None:intergenic
GCAAGGTATGGAATGTAGGT+AGG 0.578449 1_4:+61903057 Msa0175780:exon
ATGAGGACCATGAATGTCAA+GGG 0.579702 1_4:+61901320 Msa0175780:CDS
TTAGTTTCACTCCAGATCAA+AGG 0.583008 1_4:-61902985 None:intergenic
CTTACATGCTCTTTCAAGCA+TGG 0.593170 1_4:-61902719 None:intergenic
GTATTGCAGAAGTATAGGCT+TGG 0.594234 1_4:+61901475 Msa0175780:intron
GACCTACCAAGTACCGAGCT+AGG 0.595643 1_4:+61902796 Msa0175780:CDS
TCATATCTTCTAGAAAGCCC+TGG 0.597094 1_4:+61901753 Msa0175780:CDS
ATATAGGGGCCATGAAGTCA+AGG 0.600134 1_4:+61901917 Msa0175780:intron
ATCAGAAGCTGGTAACTTTG+GGG 0.602195 1_4:-61901790 None:intergenic
TAAGCTACATTTACTAGTGG+AGG 0.603652 1_4:+61901971 Msa0175780:CDS
AGGTAGGACATTGTAAAGAG+TGG 0.612316 1_4:+61903073 Msa0175780:exon
CCCATCGACTTAGACAAGAC+AGG 0.614484 1_4:-61903155 None:intergenic
AAGTAAGCTACATTTACTAG+TGG 0.617641 1_4:+61901968 Msa0175780:CDS
TGAAAGAGCATGTAAGATGT+TGG 0.619319 1_4:+61902726 Msa0175780:CDS
TCAATCCTCAAGGAATTGCA+AGG 0.620095 1_4:+61903040 Msa0175780:CDS
TTAACCCAAGTCAATCCTCA+AGG 0.626775 1_4:+61903030 Msa0175780:CDS
CACTAGAAGGATCACCTAGT+GGG 0.632200 1_4:+61902926 Msa0175780:CDS
AATTCCTTGAGGATTGACTT+GGG 0.633351 1_4:-61903034 None:intergenic
CATCAACAAAACGTTGGTGA+AGG 0.636840 1_4:-61899394 None:intergenic
CCTCATAGTCATGACCATGA+AGG 0.638338 1_4:+61899242 Msa0175780:CDS
GATCACCTAGTGGGTCAAAG+AGG 0.638628 1_4:+61902935 Msa0175780:CDS
ATATATTCTCCAGCCTCAAG+GGG 0.645538 1_4:+61902849 Msa0175780:CDS
CCAGATCAAAGGTGATACCA+TGG 0.651921 1_4:-61902974 None:intergenic
ATCACAGTAAAGCGTGACAG+TGG 0.652711 1_4:+61899019 Msa0175780:five_prime_UTR
AGCATCCTCTTTGACCCACT+AGG 0.660253 1_4:-61902940 None:intergenic
TCAGAAGTGAGAACAAGACA+AGG 0.660603 1_4:-61899341 None:intergenic
TCAGTAGTCCAACGAAGACG+AGG 0.666354 1_4:-61899371 None:intergenic
ACATCACTTGAAAGTCTCAG+AGG 0.667131 1_4:+61902898 Msa0175780:CDS
AAATTCGCCAAGATGCAGAA+CGG 0.668751 1_4:+61902686 Msa0175780:CDS
CCACGCCAAAAGCTATCATG+AGG 0.670516 1_4:+61901303 Msa0175780:CDS
ACACTAGAAGGATCACCTAG+TGG 0.682794 1_4:+61902925 Msa0175780:CDS
CTACCAAGTACCGAGCTAGG+TGG 0.694297 1_4:+61902799 Msa0175780:CDS
TGACAGCATCAACAAAACGT+TGG 0.700307 1_4:-61899400 None:intergenic
CAGAAGTGAGAACAAGACAA+GGG 0.729677 1_4:-61899340 None:intergenic
TAGGGGCCATGAAGTCAAGG+AGG 0.733476 1_4:+61901920 Msa0175780:intron
ATGCGATCATATAATTCACG+AGG 0.734042 1_4:+61903253 Msa0175780:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCATAATAAAATATAATTAA+GGG + chr1_4:61900779-61900798 Msa0175780:intron 10.0%
!! ATTTATCAATTTGAATTATA+TGG + chr1_4:61901543-61901562 Msa0175780:intron 10.0%
!!! TTTTTTTTTTGTTGTTTTTT+TGG + chr1_4:61901725-61901744 Msa0175780:intron 10.0%
!! TGATTAATTATGAAATATTA+TGG + chr1_4:61902325-61902344 Msa0175780:intron 10.0%
!!! TGAAATTTTTATAGTATTAG+AGG - chr1_4:61899141-61899160 None:intergenic 15.0%
!! AATGAATAAATTAACCAAAT+GGG - chr1_4:61899511-61899530 None:intergenic 15.0%
!! AAATGAATAAATTAACCAAA+TGG - chr1_4:61899512-61899531 None:intergenic 15.0%
!!! TAATCATTTTTATTTCATCT+TGG + chr1_4:61899709-61899728 Msa0175780:intron 15.0%
!! AAATAAATCTTATCTAAGAA+AGG - chr1_4:61900078-61900097 None:intergenic 15.0%
!! AATTCACAAAACAAAAAAAT+GGG - chr1_4:61900144-61900163 None:intergenic 15.0%
!! TAATTCACAAAACAAAAAAA+TGG - chr1_4:61900145-61900164 None:intergenic 15.0%
!!! GAAAATAAACATTTGATTTT+TGG - chr1_4:61900512-61900531 None:intergenic 15.0%
!!! CAAAATCATTCAAATTTTAT+TGG + chr1_4:61900677-61900696 Msa0175780:intron 15.0%
!! GGCATAATAAAATATAATTA+AGG + chr1_4:61900778-61900797 Msa0175780:intron 15.0%
!!! AGATCATTGAATTTTATTAT+AGG + chr1_4:61900990-61901009 Msa0175780:intron 15.0%
!!! GATCATTGAATTTTATTATA+GGG + chr1_4:61900991-61901010 Msa0175780:intron 15.0%
!! AAACTACCATAAAAAATAAA+AGG - chr1_4:61901066-61901085 None:intergenic 15.0%
!! TATTATGATGTGAATAATAT+AGG + chr1_4:61901174-61901193 Msa0175780:intron 15.0%
!!! TTATTTTAGACCAATTTAAT+TGG + chr1_4:61902043-61902062 Msa0175780:intron 15.0%
!!! ATTTAAGATACCAATTAAAT+TGG - chr1_4:61902056-61902075 None:intergenic 15.0%
!! AATATAACATTATAGAGTTA+GGG + chr1_4:61902106-61902125 Msa0175780:intron 15.0%
!! AACTTCTATAAAACTTAATA+AGG - chr1_4:61902574-61902593 None:intergenic 15.0%
!! ATAGAAGTTAAGAATTATTA+TGG + chr1_4:61902524-61902543 Msa0175780:intron 15.0%
!!! TTTCTTCTTTTTCTTTAACT+GGG + chr1_4:61899163-61899182 Msa0175780:five_prime_UTR 20.0%
!!! AACATGTTATTTTTCTTCTA+TGG - chr1_4:61899206-61899225 None:intergenic 20.0%
!!! AGAAAAATAACATGTTTTCT+AGG + chr1_4:61899210-61899229 Msa0175780:exon 20.0%
!! ATGAATAAATTAACCAAATG+GGG - chr1_4:61899510-61899529 None:intergenic 20.0%
!! TATCAATGTCAAACTAAAAA+TGG - chr1_4:61899542-61899561 None:intergenic 20.0%
!!! ATAAATGGTTTTTGTTTTTG+AGG + chr1_4:61899565-61899584 Msa0175780:intron 20.0%
!! ATAAGATTTATTTGTACATC+TGG + chr1_4:61900085-61900104 Msa0175780:intron 20.0%
!! ATTCACAAAACAAAAAAATG+GGG - chr1_4:61900143-61900162 None:intergenic 20.0%
!!! AACTTTATATTTTAGTTGGT+TGG - chr1_4:61900598-61900617 None:intergenic 20.0%
!!! GTGAAACTTTATATTTTAGT+TGG - chr1_4:61900602-61900621 None:intergenic 20.0%
!!! ATATTTTATTATGCCTGATT+TGG - chr1_4:61900773-61900792 None:intergenic 20.0%
!!! ACATTGCCTTTTATTTTTTA+TGG + chr1_4:61901057-61901076 Msa0175780:intron 20.0%
!! TTTGTTTAATTATGTATCAC+TGG + chr1_4:61901593-61901612 Msa0175780:intron 20.0%
!!! TTTTTTGTTGTTTTTTTGGA+AGG + chr1_4:61901729-61901748 Msa0175780:intron 20.0%
!!! TTTTTGTTGTTTTTTTGGAA+GGG + chr1_4:61901730-61901749 Msa0175780:intron 20.0%
!! CAATATAACATTATAGAGTT+AGG + chr1_4:61902105-61902124 Msa0175780:intron 20.0%
!! TTCATAATTAATCATGTCTA+CGG - chr1_4:61902319-61902338 None:intergenic 20.0%
!! ATTATGAAATATTATGGTGT+TGG + chr1_4:61902331-61902350 Msa0175780:intron 20.0%
!!! TTTTTTTTTACTGTAGTTTG+TGG + chr1_4:61902464-61902483 Msa0175780:intron 20.0%
!! GAAGTTAAGAATTATTATGT+TGG + chr1_4:61902527-61902546 Msa0175780:intron 20.0%
!! GAAGTTAAGAATTATTATGT+TGG + chr1_4:61902527-61902546 Msa0175780:intron 20.0%
!! CTTTCTTCTTTTTCTTTAAC+TGG + chr1_4:61899162-61899181 Msa0175780:five_prime_UTR 25.0%
! CCAGAAAAGTAACAAAATTT+AGG - chr1_4:61899477-61899496 None:intergenic 25.0%
!!! CCTAAATTTTGTTACTTTTC+TGG + chr1_4:61899474-61899493 Msa0175780:intron 25.0%
! TTGACATTGATAGAGATAAA+TGG + chr1_4:61899550-61899569 Msa0175780:intron 25.0%
! TTTAAATTGTGTGAGATTTG+TGG + chr1_4:61899647-61899666 Msa0175780:intron 25.0%
! GTTTAACACAATTAGAATGT+GGG + chr1_4:61899890-61899909 Msa0175780:intron 25.0%
! TTTGCAATTTATCTAGATTC+AGG + chr1_4:61900416-61900435 Msa0175780:intron 25.0%
! TTGCAATTTATCTAGATTCA+GGG + chr1_4:61900417-61900436 Msa0175780:intron 25.0%
! CTTAAGATACAAAAATCTCA+AGG + chr1_4:61900621-61900640 Msa0175780:intron 25.0%
! AGTGACATTAGAATTTGAAA+AGG - chr1_4:61900652-61900671 None:intergenic 25.0%
!! TGATGTTAGACTAATTTTAG+AGG - chr1_4:61900707-61900726 None:intergenic 25.0%
! GACTCCAAAAATATAATTAG+CGG + chr1_4:61900746-61900765 Msa0175780:intron 25.0%
! ATAATCCAAAGTCCAAATTA+GGG + chr1_4:61900814-61900833 Msa0175780:intron 25.0%
! AGAGTTTATAAACCCTAATT+TGG - chr1_4:61900829-61900848 None:intergenic 25.0%
!! TTTATGTATTGCAGAAGTAT+AGG + chr1_4:61901470-61901489 Msa0175780:intron 25.0%
!!! TGTTTGTAATTTTAACCTGT+TGG + chr1_4:61901666-61901685 Msa0175780:intron 25.0%
!! TAAGAATTTCATTGTTTCTC+TGG + chr1_4:61901822-61901841 Msa0175780:intron 25.0%
!!! TTCGATCATTTTTTGACAAT+AGG - chr1_4:61902134-61902153 None:intergenic 25.0%
! GTTATATAGATTCTGTAGTA+TGG + chr1_4:61902188-61902207 Msa0175780:intron 25.0%
! AAGAATTATTATGGTATTGC+AGG + chr1_4:61902648-61902667 Msa0175780:intron 25.0%
! CTTAATTAATCCTACAAACT+AGG - chr1_4:61903114-61903133 None:intergenic 25.0%
!!! AAGAACAAGACTTTGGTTTT+GGG - chr1_4:61899064-61899083 None:intergenic 30.0%
!! AAAGAACAAGACTTTGGTTT+TGG - chr1_4:61899065-61899084 None:intergenic 30.0%
AAGTGAAAAGAACAAGACTT+TGG - chr1_4:61899071-61899090 None:intergenic 30.0%
AGTATTAGAGGAGAAAATGA+AGG - chr1_4:61899129-61899148 None:intergenic 30.0%
! TTCTTTTTCTTTAACTGGGT+TGG + chr1_4:61899167-61899186 Msa0175780:five_prime_UTR 30.0%
TAGTGTAAATTACTGAAGCT+AGG + chr1_4:61899600-61899619 Msa0175780:intron 30.0%
TAAATTACTGAAGCTAGGAA+AGG + chr1_4:61899605-61899624 Msa0175780:intron 30.0%
!! TGGTAAATTGCTGTTTGTTT+GGG + chr1_4:61899667-61899686 Msa0175780:intron 30.0%
TTGCGATTATGACAAATCTA+CGG + chr1_4:61899784-61899803 Msa0175780:intron 30.0%
ACTAGTAAATACAACCTCAA+GGG + chr1_4:61899868-61899887 Msa0175780:intron 30.0%
GGTTTAACACAATTAGAATG+TGG + chr1_4:61899889-61899908 Msa0175780:intron 30.0%
CAAGTGCATAATTATTCACA+TGG - chr1_4:61900012-61900031 None:intergenic 30.0%
! TTGTTGTTGTTAGTATCTCA+GGG + chr1_4:61900240-61900259 Msa0175780:intron 30.0%
GGAAAGTTATAGAGATACTA+GGG - chr1_4:61900491-61900510 None:intergenic 30.0%
TGGAAAGTTATAGAGATACT+AGG - chr1_4:61900492-61900511 None:intergenic 30.0%
!!! TTGGTTTTTAGTGGAAAAAG+TGG - chr1_4:61900579-61900598 None:intergenic 30.0%
!!! TTTAGTTGGTTGGTTTTTAG+TGG - chr1_4:61900588-61900607 None:intergenic 30.0%
! TGGTCCGCTAATTATATTTT+TGG - chr1_4:61900753-61900772 None:intergenic 30.0%
TATAATTAAGGGACCAAATC+AGG + chr1_4:61900790-61900809 Msa0175780:intron 30.0%
CATAATCCAAAGTCCAAATT+AGG + chr1_4:61900813-61900832 Msa0175780:intron 30.0%
ATAAACCCTAATTTGGACTT+TGG - chr1_4:61900822-61900841 None:intergenic 30.0%
TCATGCTAAGCAAATACTAA+TGG - chr1_4:61900855-61900874 None:intergenic 30.0%
AATACTAATAGCATTCTCCT+TGG - chr1_4:61900898-61900917 None:intergenic 30.0%
GATCTTCAGAAAAATTCTGA+AGG - chr1_4:61900975-61900994 None:intergenic 30.0%
!! GCTTTTATTTGCTCACTTTA+TGG + chr1_4:61901089-61901108 Msa0175780:intron 30.0%
TTTATTTGCTCACTTTATGG+TGG + chr1_4:61901092-61901111 Msa0175780:intron 30.0%
TTATTTGCTCACTTTATGGT+GGG + chr1_4:61901093-61901112 Msa0175780:intron 30.0%
CCTCTCTAACTCTAATTATT+GGG + chr1_4:61901197-61901216 Msa0175780:intron 30.0%
AACTCTTCTAATGCATCTAT+TGG + chr1_4:61901237-61901256 Msa0175780:intron 30.0%
TCATTTAAAGAGTCATCTTC+AGG + chr1_4:61901355-61901374 Msa0175780:CDS 30.0%
! TAGAATCCTTTTCAATAGAC+TGG + chr1_4:61901616-61901635 Msa0175780:intron 30.0%
! AAGTGTCATTCAGACATAAA+GGG - chr1_4:61901863-61901882 None:intergenic 30.0%
TGCAATCTCATGTCATATAT+AGG + chr1_4:61901901-61901920 Msa0175780:intron 30.0%
GCAATCTCATGTCATATATA+GGG + chr1_4:61901902-61901921 Msa0175780:intron 30.0%
CAATCTCATGTCATATATAG+GGG + chr1_4:61901903-61901922 Msa0175780:intron 30.0%
AAGTAAGCTACATTTACTAG+TGG + chr1_4:61901968-61901987 Msa0175780:CDS 30.0%
AAATGATCGAATCTCAACTT+AGG + chr1_4:61902143-61902162 Msa0175780:intron 30.0%
! TTTTTCTGTCTTTGGCAATT+GGG - chr1_4:61902236-61902255 None:intergenic 30.0%
TTGGTATTGTAAGTAGATTG+TGG + chr1_4:61902407-61902426 Msa0175780:intron 30.0%
TGGTATTGTAAGTAGATTGT+GGG + chr1_4:61902408-61902427 Msa0175780:intron 30.0%
GAATTATATGATCGCATATG+TGG - chr1_4:61903250-61903269 None:intergenic 30.0%
AGAGGAGAAAATGAAGGAAA+TGG - chr1_4:61899123-61899142 None:intergenic 35.0%
GAAATGAGTTAGTTACTGGT+AGG - chr1_4:61899440-61899459 None:intergenic 35.0%
GAGAGAAATGAGTTAGTTAC+TGG - chr1_4:61899444-61899463 None:intergenic 35.0%
!! GTGGTAAATTGCTGTTTGTT+TGG + chr1_4:61899666-61899685 Msa0175780:intron 35.0%
TCTTGGATTTGTCAGAATCA+CGG + chr1_4:61899726-61899745 Msa0175780:intron 35.0%
CATCTTCTTAAGTGCATCTT+TGG - chr1_4:61899815-61899834 None:intergenic 35.0%
CTTGAGGTTGTATTTACTAG+TGG - chr1_4:61899869-61899888 None:intergenic 35.0%
CACTAGTAAATACAACCTCA+AGG + chr1_4:61899867-61899886 Msa0175780:intron 35.0%
CTAATTGTGTTAAACCCTTG+AGG - chr1_4:61899885-61899904 None:intergenic 35.0%
TAACACAATTAGAATGTGGG+AGG + chr1_4:61899893-61899912 Msa0175780:intron 35.0%
GCTTACTATCCATGTACATA+TGG + chr1_4:61900046-61900065 Msa0175780:intron 35.0%
! TGGTAGCTAATGAGTGATTT+TGG + chr1_4:61900116-61900135 Msa0175780:intron 35.0%
ATGTCTTATCCCACTAAATG+GGG - chr1_4:61900212-61900231 None:intergenic 35.0%
CATGTCTTATCCCACTAAAT+GGG - chr1_4:61900213-61900232 None:intergenic 35.0%
TCATGTCTTATCCCACTAAA+TGG - chr1_4:61900214-61900233 None:intergenic 35.0%
! GTTGTTGTTGTTAGTATCTC+AGG + chr1_4:61900239-61900258 Msa0175780:intron 35.0%
TTGCAATTTCTCTGCATTCA+GGG - chr1_4:61900273-61900292 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG - chr1_4:61900274-61900293 None:intergenic 35.0%
ACCAACAAAGTCTACATTCA+GGG - chr1_4:61900302-61900321 None:intergenic 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr1_4:61900388-61900407 Msa0175780:intron 35.0%
! TATAATTAGCGGACCAAATC+AGG + chr1_4:61900757-61900776 Msa0175780:intron 35.0%
ACTTTGGATTATGCCTGATT+TGG - chr1_4:61900806-61900825 None:intergenic 35.0%
ATTTGCTTAGCATGATACCA+TGG + chr1_4:61900860-61900879 Msa0175780:intron 35.0%
TATTTGCTCACTTTATGGTG+GGG + chr1_4:61901094-61901113 Msa0175780:intron 35.0%
GCCTCTCTAACTCTAATTAT+TGG + chr1_4:61901196-61901215 Msa0175780:intron 35.0%
CCCAATAATTAGAGTTAGAG+AGG - chr1_4:61901200-61901219 None:intergenic 35.0%
TAGAAGAGTTTATCAGAAGC+AGG - chr1_4:61901227-61901246 None:intergenic 35.0%
ATGCAACCAGTCTATTGAAA+AGG - chr1_4:61901625-61901644 None:intergenic 35.0%
! AACCTGTTGGTTATTGTCTA+TGG + chr1_4:61901679-61901698 Msa0175780:intron 35.0%
! CAAGTGTCATTCAGACATAA+AGG - chr1_4:61901864-61901883 None:intergenic 35.0%
TGAGATTGCAATTCTCAGTT+CGG - chr1_4:61901891-61901910 None:intergenic 35.0%
TAAGCTACATTTACTAGTGG+AGG + chr1_4:61901971-61901990 Msa0175780:CDS 35.0%
TATGGAAAGTAGATCAGAGA+AGG + chr1_4:61902206-61902225 Msa0175780:intron 35.0%
! CTTTTTCTGTCTTTGGCAAT+TGG - chr1_4:61902237-61902256 None:intergenic 35.0%
CAATTGCCAAAGACAGAAAA+AGG + chr1_4:61902235-61902254 Msa0175780:intron 35.0%
! CTTTTGCCTTTTTCTGTCTT+TGG - chr1_4:61902244-61902263 None:intergenic 35.0%
TGTGAAGAGTTAGAGGTTAA+TGG + chr1_4:61902289-61902308 Msa0175780:intron 35.0%
ACAATCATTGCTGTACAATC+AGG - chr1_4:61902434-61902453 None:intergenic 35.0%
! TGAAAGAGCATGTAAGATGT+TGG + chr1_4:61902726-61902745 Msa0175780:CDS 35.0%
! TGAGACTTTCAAGTGATGTT+AGG - chr1_4:61902897-61902916 None:intergenic 35.0%
TTAGTTTCACTCCAGATCAA+AGG - chr1_4:61902988-61903007 None:intergenic 35.0%
GAAACTAACATGAGAACTCA+AGG + chr1_4:61903000-61903019 Msa0175780:CDS 35.0%
! AATTCCTTGAGGATTGACTT+GGG - chr1_4:61903037-61903056 None:intergenic 35.0%
AATTGCAAGGTATGGAATGT+AGG + chr1_4:61903053-61903072 Msa0175780:CDS 35.0%
ATGCGATCATATAATTCACG+AGG + chr1_4:61903253-61903272 Msa0175780:three_prime_UTR 35.0%
TCACCACTTTCTCTTCCAAA+TGG + chr1_4:61899090-61899109 Msa0175780:five_prime_UTR 40.0%
CACCACTTTCTCTTCCAAAT+GGG + chr1_4:61899091-61899110 Msa0175780:five_prime_UTR 40.0%
CAACAACAACACTTCCTTCA+TGG - chr1_4:61899259-61899278 None:intergenic 40.0%
!! AGGAAGTGTTGTTGTTGTTC+AGG + chr1_4:61899262-61899281 Msa0175780:CDS 40.0%
CAGAAGTGAGAACAAGACAA+GGG - chr1_4:61899343-61899362 None:intergenic 40.0%
TCAGAAGTGAGAACAAGACA+AGG - chr1_4:61899344-61899363 None:intergenic 40.0%
! CATCAACAAAACGTTGGTGA+AGG - chr1_4:61899397-61899416 None:intergenic 40.0%
TGACAGCATCAACAAAACGT+TGG - chr1_4:61899403-61899422 None:intergenic 40.0%
GTGATGTTGTAAAAGCTACG+AGG - chr1_4:61899756-61899775 None:intergenic 40.0%
ATTAGAATGTGGGAGGTTTG+AGG + chr1_4:61899900-61899919 Msa0175780:intron 40.0%
AGGACAGTACCATATGTACA+TGG - chr1_4:61900058-61900077 None:intergenic 40.0%
TTGTACATCTGGTCTCTCTA+TGG + chr1_4:61900096-61900115 Msa0175780:intron 40.0%
TCCCTGAATGTAGACTTTGT+TGG + chr1_4:61900298-61900317 Msa0175780:intron 40.0%
GACCAACAAAGTCTACATTC+AGG - chr1_4:61900303-61900322 None:intergenic 40.0%
! AGACTTTGTTGGTCACTTTC+AGG + chr1_4:61900309-61900328 Msa0175780:intron 40.0%
! GACTTTGTTGGTCACTTTCA+GGG + chr1_4:61900310-61900329 Msa0175780:intron 40.0%
GACTAACAGAGTCTACATTC+AGG + chr1_4:61900387-61900406 Msa0175780:intron 40.0%
TGACGACTCATTTCCTATTC+CGG + chr1_4:61900447-61900466 Msa0175780:intron 40.0%
! GAGATTAGTCACTTTAGTCC+CGG - chr1_4:61900469-61900488 None:intergenic 40.0%
CAGGGGACTTAATAAGATCA+AGG - chr1_4:61900926-61900945 None:intergenic 40.0%
TGATCTTATTAAGTCCCCTG+TGG + chr1_4:61900926-61900945 Msa0175780:intron 40.0%
GATCTTATTAAGTCCCCTGT+GGG + chr1_4:61900927-61900946 Msa0175780:intron 40.0%
TTCAGTCCTCATAGCTTTCT+TGG + chr1_4:61901015-61901034 Msa0175780:intron 40.0%
ATTTGCTCACTTTATGGTGG+GGG + chr1_4:61901095-61901114 Msa0175780:intron 40.0%
! ATGGTCCTCATGATAGCTTT+TGG - chr1_4:61901311-61901330 None:intergenic 40.0%
ATGAGGACCATGAATGTCAA+GGG + chr1_4:61901320-61901339 Msa0175780:CDS 40.0%
TGTCAAACCCTTGACATTCA+TGG - chr1_4:61901330-61901349 None:intergenic 40.0%
! GTATTGCAGAAGTATAGGCT+TGG + chr1_4:61901475-61901494 Msa0175780:intron 40.0%
!! AGCTGGAAAAGATTTTGACG+AGG + chr1_4:61901504-61901523 Msa0175780:CDS 40.0%
!! GCTGGAAAAGATTTTGACGA+GGG + chr1_4:61901505-61901524 Msa0175780:CDS 40.0%
AGCCATAGACAATAACCAAC+AGG - chr1_4:61901684-61901703 None:intergenic 40.0%
! TCATATCTTCTAGAAAGCCC+TGG + chr1_4:61901753-61901772 Msa0175780:CDS 40.0%
ATCAGAAGCTGGTAACTTTG+GGG - chr1_4:61901793-61901812 None:intergenic 40.0%
CATCAGAAGCTGGTAACTTT+GGG - chr1_4:61901794-61901813 None:intergenic 40.0%
TTAATGCCTCCTTGACTTCA+TGG - chr1_4:61901929-61901948 None:intergenic 40.0%
TGATCGAATCTCAACTTAGG+TGG + chr1_4:61902146-61902165 Msa0175780:intron 40.0%
GAATCTCAACTTAGGTGGTT+TGG + chr1_4:61902151-61902170 Msa0175780:intron 40.0%
GTGAAACTGTGAAGAGTTAG+AGG + chr1_4:61902282-61902301 Msa0175780:intron 40.0%
! TGTTGGTTGATCTGTGTATC+CGG + chr1_4:61902348-61902367 Msa0175780:intron 40.0%
!!! GCTTGGCTGTTTTTGTTGAT+TGG + chr1_4:61902388-61902407 Msa0175780:intron 40.0%
AAATTCGCCAAGATGCAGAA+CGG + chr1_4:61902686-61902705 Msa0175780:CDS 40.0%
TATATCTCCGTTCTGCATCT+TGG - chr1_4:61902696-61902715 None:intergenic 40.0%
AGATGCAGAACGGAGATATA+TGG + chr1_4:61902696-61902715 Msa0175780:CDS 40.0%
CTTACATGCTCTTTCAAGCA+TGG - chr1_4:61902722-61902741 None:intergenic 40.0%
CATATATTCTCCAGCCTCAA+GGG + chr1_4:61902848-61902867 Msa0175780:CDS 40.0%
ATATATTCTCCAGCCTCAAG+GGG + chr1_4:61902849-61902868 Msa0175780:CDS 40.0%
TGATGTTAGGCAACTTTCTG+TGG - chr1_4:61902884-61902903 None:intergenic 40.0%
ACATCACTTGAAAGTCTCAG+AGG + chr1_4:61902898-61902917 Msa0175780:CDS 40.0%
TTAACCCAAGTCAATCCTCA+AGG + chr1_4:61903030-61903049 Msa0175780:CDS 40.0%
CAATTCCTTGAGGATTGACT+TGG - chr1_4:61903038-61903057 None:intergenic 40.0%
TCAATCCTCAAGGAATTGCA+AGG + chr1_4:61903040-61903059 Msa0175780:CDS 40.0%
AGGTAGGACATTGTAAAGAG+TGG + chr1_4:61903073-61903092 Msa0175780:exon 40.0%
! GTGTTTCACTCCTAGTTTGT+AGG + chr1_4:61903101-61903120 Msa0175780:three_prime_UTR 40.0%
TAAGTCGATGGGAATAGATC+TGG + chr1_4:61903166-61903185 Msa0175780:three_prime_UTR 40.0%
ATCACAGTAAAGCGTGACAG+TGG + chr1_4:61899019-61899038 Msa0175780:five_prime_UTR 45.0%
GACCCATTTGGAAGAGAAAG+TGG - chr1_4:61899096-61899115 None:intergenic 45.0%
GGAAATGGAGATGACCCATT+TGG - chr1_4:61899108-61899127 None:intergenic 45.0%
CCTTCATGGTCATGACTATG+AGG - chr1_4:61899245-61899264 None:intergenic 45.0%
CCTCATAGTCATGACCATGA+AGG + chr1_4:61899242-61899261 Msa0175780:CDS 45.0%
ATCCAAAACCTCGTCTTCGT+TGG + chr1_4:61899363-61899382 Msa0175780:CDS 45.0%
GTTGATGCTGTCACTCAACT+TGG + chr1_4:61899410-61899429 Msa0175780:CDS 45.0%
!!! TGGTTTTGATGCACCCCATT+TGG + chr1_4:61899494-61899513 Msa0175780:intron 45.0%
TATAGCCGACCCCATTTAGT+GGG + chr1_4:61900200-61900219 Msa0175780:intron 45.0%
CTTATCCCACTAAATGGGGT+CGG - chr1_4:61900208-61900227 None:intergenic 45.0%
ACCAACAGAGTCTGCATTCA+GGG + chr1_4:61900356-61900375 Msa0175780:intron 45.0%
GACGACTCATTTCCTATTCC+GGG + chr1_4:61900448-61900467 Msa0175780:intron 45.0%
! AGTCACTTTAGTCCCGGAAT+AGG - chr1_4:61900463-61900482 None:intergenic 45.0%
GCTCAACCAAGAAAGCTATG+AGG - chr1_4:61901024-61901043 None:intergenic 45.0%
CATGAGGACCATGAATGTCA+AGG + chr1_4:61901319-61901338 Msa0175780:CDS 45.0%
! TATAGGCTTGGTAAGCAAGC+TGG + chr1_4:61901487-61901506 Msa0175780:CDS 45.0%
TTTGACGAGGGATGCAAAGA+TGG + chr1_4:61901517-61901536 Msa0175780:CDS 45.0%
! GGGATGAGTTTTCAGTACCA+GGG - chr1_4:61901773-61901792 None:intergenic 45.0%
GCATCAGAAGCTGGTAACTT+TGG - chr1_4:61901795-61901814 None:intergenic 45.0%
TACTCGTTTGCATCAGAAGC+TGG - chr1_4:61901804-61901823 None:intergenic 45.0%
ATATAGGGGCCATGAAGTCA+AGG + chr1_4:61901917-61901936 Msa0175780:intron 45.0%
!! GGAGGCATTAAGAGCACAAA+TGG + chr1_4:61901938-61901957 Msa0175780:CDS 45.0%
! TTAGGTGGTTTGGACATGTG+TGG + chr1_4:61902161-61902180 Msa0175780:intron 45.0%
CTCATCAAGTGGACAATGCT+TGG + chr1_4:61902371-61902390 Msa0175780:intron 45.0%
CATTCCATTTCCACCTAGCT+CGG - chr1_4:61902812-61902831 None:intergenic 45.0%
CCTTGAGGCTGGAGAATATA+TGG - chr1_4:61902850-61902869 None:intergenic 45.0%
CCATATATTCTCCAGCCTCA+AGG + chr1_4:61902847-61902866 Msa0175780:CDS 45.0%
CTCAGAGGATTGACACTAGA+AGG + chr1_4:61902913-61902932 Msa0175780:CDS 45.0%
ACACTAGAAGGATCACCTAG+TGG + chr1_4:61902925-61902944 Msa0175780:CDS 45.0%
CACTAGAAGGATCACCTAGT+GGG + chr1_4:61902926-61902945 Msa0175780:CDS 45.0%
CCAGATCAAAGGTGATACCA+TGG - chr1_4:61902977-61902996 None:intergenic 45.0%
CCATGGTATCACCTTTGATC+TGG + chr1_4:61902974-61902993 Msa0175780:CDS 45.0%
CCATACCTTGCAATTCCTTG+AGG - chr1_4:61903048-61903067 None:intergenic 45.0%
CCTCAAGGAATTGCAAGGTA+TGG + chr1_4:61903045-61903064 Msa0175780:CDS 45.0%
GCAAGGTATGGAATGTAGGT+AGG + chr1_4:61903057-61903076 Msa0175780:exon 45.0%
TCCTGTCTTGTCTAAGTCGA+TGG + chr1_4:61903154-61903173 Msa0175780:three_prime_UTR 45.0%
CCTGTCTTGTCTAAGTCGAT+GGG + chr1_4:61903155-61903174 Msa0175780:three_prime_UTR 45.0%
! GTCCAACGAAGACGAGGTTT+TGG - chr1_4:61899368-61899387 None:intergenic 50.0%
TCAGTAGTCCAACGAAGACG+AGG - chr1_4:61899374-61899393 None:intergenic 50.0%
GATGCTGTCACTCAACTTGG+TGG + chr1_4:61899413-61899432 Msa0175780:CDS 50.0%
CTATAGCCGACCCCATTTAG+TGG + chr1_4:61900199-61900218 Msa0175780:intron 50.0%
GACCAACAGAGTCTGCATTC+AGG + chr1_4:61900355-61900374 Msa0175780:intron 50.0%
TCCCTGAATGCAGACTCTGT+TGG - chr1_4:61900360-61900379 None:intergenic 50.0%
CTTGGCTCAATCGTAGACCA+TGG - chr1_4:61900880-61900899 None:intergenic 50.0%
CATGGTCTACGATTGAGCCA+AGG + chr1_4:61900878-61900897 Msa0175780:intron 50.0%
ATTAAGTCCCCTGTGGGAGA+AGG + chr1_4:61900933-61900952 Msa0175780:intron 50.0%
TTAAGTCCCCTGTGGGAGAA+GGG + chr1_4:61900934-61900953 Msa0175780:intron 50.0%
TGAAGAACCCTTCTCCCACA+GGG - chr1_4:61900944-61900963 None:intergenic 50.0%
ATGAAGAACCCTTCTCCCAC+AGG - chr1_4:61900945-61900964 None:intergenic 50.0%
! CCTCATGATAGCTTTTGGCG+TGG - chr1_4:61901306-61901325 None:intergenic 50.0%
CCACGCCAAAAGCTATCATG+AGG + chr1_4:61901303-61901322 Msa0175780:CDS 50.0%
! GGGGATGAGTTTTCAGTACC+AGG - chr1_4:61901774-61901793 None:intergenic 50.0%
TGTGTATCCGGCTCATCAAG+TGG + chr1_4:61902360-61902379 Msa0175780:intron 50.0%
GCATTGTCCACTTGATGAGC+CGG - chr1_4:61902370-61902389 None:intergenic 50.0%
TTTCCACCTAGCTCGGTACT+TGG - chr1_4:61902805-61902824 None:intergenic 50.0%
! AGTACCGAGCTAGGTGGAAA+TGG + chr1_4:61902805-61902824 Msa0175780:CDS 50.0%
! GATCACCTAGTGGGTCAAAG+AGG + chr1_4:61902935-61902954 Msa0175780:CDS 50.0%
AGCATCCTCTTTGACCCACT+AGG - chr1_4:61902943-61902962 None:intergenic 50.0%
! TAGTGGGTCAAAGAGGATGC+TGG + chr1_4:61902942-61902961 Msa0175780:CDS 50.0%
AGTGGGTCAAAGAGGATGCT+GGG + chr1_4:61902943-61902962 Msa0175780:CDS 50.0%
!! CCCATCGACTTAGACAAGAC+AGG - chr1_4:61903158-61903177 None:intergenic 50.0%
GAAGAACCCTTCTCCCACAG+GGG - chr1_4:61900943-61900962 None:intergenic 55.0%
TAGGGGCCATGAAGTCAAGG+AGG + chr1_4:61901920-61901939 Msa0175780:intron 55.0%
! GGTGGTTTGGACATGTGTGG+AGG + chr1_4:61902164-61902183 Msa0175780:intron 55.0%
!! GACCTACCAAGTACCGAGCT+AGG + chr1_4:61902796-61902815 Msa0175780:CDS 55.0%
CACCTAGCTCGGTACTTGGT+AGG - chr1_4:61902801-61902820 None:intergenic 55.0%
!! CTACCAAGTACCGAGCTAGG+TGG + chr1_4:61902799-61902818 Msa0175780:CDS 55.0%
GTCAAAGAGGATGCTGGGCT+TGG + chr1_4:61902948-61902967 Msa0175780:CDS 55.0%
AGCAGTTAGCCCCTTGAGGC+TGG - chr1_4:61902861-61902880 None:intergenic 60.0%
GTGGAGCAGTTAGCCCCTTG+AGG - chr1_4:61902865-61902884 None:intergenic 60.0%
GATGCTGGGCTTGGACTCCA+TGG + chr1_4:61902957-61902976 Msa0175780:CDS 60.0%
CAGCAGCAGCAGCAGCAGCA+AGG - chr1_4:61899316-61899335 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61899005 61903285 61899005 ID=Msa0175780;Name=Msa0175780
chr1_4 mRNA 61899005 61903285 61899005 ID=Msa0175780-mRNA-1;Parent=Msa0175780;Name=Msa0175780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=216|1|1|1|1|1|6|211|299
chr1_4 exon 61899005 61899443 61899005 ID=Msa0175780-mRNA-1:exon:19810;Parent=Msa0175780-mRNA-1
chr1_4 exon 61901300 61901376 61901300 ID=Msa0175780-mRNA-1:exon:19811;Parent=Msa0175780-mRNA-1
chr1_4 exon 61901484 61901538 61901484 ID=Msa0175780-mRNA-1:exon:19812;Parent=Msa0175780-mRNA-1
chr1_4 exon 61901751 61901820 61901751 ID=Msa0175780-mRNA-1:exon:19813;Parent=Msa0175780-mRNA-1
chr1_4 exon 61901923 61901992 61901923 ID=Msa0175780-mRNA-1:exon:19814;Parent=Msa0175780-mRNA-1
chr1_4 exon 61902670 61903285 61902670 ID=Msa0175780-mRNA-1:exon:19815;Parent=Msa0175780-mRNA-1
chr1_4 five_prime_UTR 61899005 61899220 61899005 ID=Msa0175780-mRNA-1:five_prime_utr;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61899221 61899443 61899221 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61901300 61901376 61901300 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61901484 61901538 61901484 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61901751 61901820 61901751 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61901923 61901992 61901923 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 CDS 61902670 61903074 61902670 ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4 three_prime_UTR 61903075 61903285 61903075 ID=Msa0175780-mRNA-1:three_prime_utr;Parent=Msa0175780-mRNA-1
Gene Sequence

>Msa0175780

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGCTGCTGCTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTACCAAAGCCACGCCAAAAGCTATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAAGCTGGAAAAGATTTTGACGAGGGATGCAAAGATGGGTCATATCTTCTAGAAAGCCCTGGTACTGAAAACTCATCCCCAAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAAAGAGCATGTAAGATGTTGGCTGATCAATTTATCGCAACTATAGACACAGACATTCAAAAATTTCAAGACCTACCAAGTACCGAGCTAGGTGGAAATGGAATGCATGTTTCAGAAGTACCATATATTCTCCAGCCTCAAGGGGCTAACTGCTCCACAGAAAGTTGCCTAACATCACTTGAAAGTCTCAGAGGATTGACACTAGAAGGATCACCTAGTGGGTCAAAGAGGATGCTGGGCTTGGACTCCATGGTATCACCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAACCCAAGTCAATCCTCAAGGAATTGCAAGGTATGGAATGTAG
Protein sequence

>Msa0175780

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAAAAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIATIDTDIQKFQDLPSTELGGNGMHVSEVPYILQPQGANCSTESCLTSLESLRGLTLEGSPSGSKRMLGLDSMVSPLIWSETNMRTQGIHLTQVNPQGIARYGM*