AlfalfaGEDB | Msa0175780

M. sativa cultivar zhongmu-4 / Msa0175780

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0175780	XP_013469265.1	95.017	301	7	3	1	299	1	295	0.0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0175780	sp\|Q94A57\|PHL2_ARATH	49.138	232	90	6	39	244	30	259	3.46e-63	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0175780	A0A072VPG6	95.017	301	7	3	1	299	1	295	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
Msa0175780	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0175780	0.820482	6.701470e-53	-8.615850e-47
Msa0003890	Msa0175780	0.846593	1.970171e-59	-8.615850e-47
Msa0011960	Msa0175780	0.804297	2.311722e-49	-8.615850e-47
Msa0012080	Msa0175780	0.806149	9.463141e-50	-8.615850e-47
Msa0017510	Msa0175780	0.850774	1.366447e-60	-8.615850e-47
Msa0017770	Msa0175780	-0.801701	7.953462e-49	-8.615850e-47
Msa0021510	Msa0175780	0.814014	1.911034e-51	-8.615850e-47
Msa0026800	Msa0175780	0.815180	1.054822e-51	-8.615850e-47
Msa0027230	Msa0175780	0.813407	2.600548e-51	-8.615850e-47
Msa0028420	Msa0175780	0.846574	1.993899e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0175780	MtrunA17_Chr1g0197171	95.017	301	7	3	1	299	1	295	0.0	587
Msa0175780	MtrunA17_Chr2g0290991	68.519	324	66	7	1	299	1	313	1.73e-147	416
Msa0175780	MtrunA17_Chr8g0356501	50.575	174	73	4	35	204	22	186	9.34e-47	160
Msa0175780	MtrunA17_Chr2g0310011	54.140	157	60	3	28	181	13	160	4.65e-45	155
Msa0175780	MtrunA17_Chr5g0409731	52.980	151	63	4	43	187	18	166	2.92e-43	150
Msa0175780	MtrunA17_Chr5g0417521	50.704	142	67	1	43	181	8	149	2.45e-39	141
Msa0175780	MtrunA17_Chr4g0042451	48.718	156	71	4	43	192	10	162	3.57e-39	140
Msa0175780	MtrunA17_Chr7g0254981	45.223	157	64	2	50	198	50	192	5.89e-39	138
Msa0175780	MtrunA17_Chr2g0321461	40.838	191	101	4	29	207	24	214	6.17e-39	140
Msa0175780	MtrunA17_Chr6g0461641	41.618	173	93	3	43	207	35	207	2.75e-37	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0175780	AT3G24120.1	49.138	232	90	6	39	244	30	259	3.51e-64	204
Msa0175780	AT4G13640.1	48.889	225	93	5	40	243	27	250	2.91e-62	199
Msa0175780	AT3G24120.2	48.511	235	90	7	39	244	30	262	4.20e-62	199
Msa0175780	AT4G13640.2	48.246	228	93	6	40	243	27	253	3.81e-60	194
Msa0175780	AT1G79430.2	54.601	163	61	4	34	192	18	171	1.21e-47	163
Msa0175780	AT3G12730.1	51.282	156	58	4	43	189	16	162	1.76e-40	141
Msa0175780	AT1G69580.1	47.337	169	68	4	39	192	23	185	2.96e-40	143
Msa0175780	AT1G69580.2	47.619	168	70	5	39	192	23	186	1.97e-39	141
Msa0175780	AT3G04030.3	38.889	234	111	8	37	245	32	258	2.68e-38	139
Msa0175780	AT5G18240.1	36.481	233	118	6	37	245	32	258	3.32e-36	134

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Find 94 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAAGACTTTGGTTT+TGG	0.220050	1_4:-61899062	None:intergenic
AAATTCGCCAAGATGCAGAA+CGG	0.668751	1_4:+61902686	Msa0175780:CDS
AAGTAAGCTACATTTACTAG+TGG	0.617641	1_4:+61901968	Msa0175780:CDS
AAGTGAAAAGAACAAGACTT+TGG	0.504304	1_4:-61899068	None:intergenic
AATTCCTTGAGGATTGACTT+GGG	0.633351	1_4:-61903034	None:intergenic
AATTGCAAGGTATGGAATGT+AGG	0.494031	1_4:+61903053	Msa0175780:CDS
ACACTAGAAGGATCACCTAG+TGG	0.682794	1_4:+61902925	Msa0175780:CDS
ACATCACTTGAAAGTCTCAG+AGG	0.667131	1_4:+61902898	Msa0175780:CDS
AGAGGAGAAAATGAAGGAAA+TGG	0.371629	1_4:-61899120	None:intergenic
AGATGCAGAACGGAGATATA+TGG	0.414090	1_4:+61902696	Msa0175780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGAAAAGAACAAGACTT+TGG	-	chr1_4:61899071-61899090	None:intergenic	30.0%
AGTATTAGAGGAGAAAATGA+AGG	-	chr1_4:61899129-61899148	None:intergenic	30.0%
TAGTGTAAATTACTGAAGCT+AGG	+	chr1_4:61899600-61899619	Msa0175780:intron	30.0%
TAAATTACTGAAGCTAGGAA+AGG	+	chr1_4:61899605-61899624	Msa0175780:intron	30.0%
TTGCGATTATGACAAATCTA+CGG	+	chr1_4:61899784-61899803	Msa0175780:intron	30.0%
ACTAGTAAATACAACCTCAA+GGG	+	chr1_4:61899868-61899887	Msa0175780:intron	30.0%
GGTTTAACACAATTAGAATG+TGG	+	chr1_4:61899889-61899908	Msa0175780:intron	30.0%
CAAGTGCATAATTATTCACA+TGG	-	chr1_4:61900012-61900031	None:intergenic	30.0%
GGAAAGTTATAGAGATACTA+GGG	-	chr1_4:61900491-61900510	None:intergenic	30.0%
TGGAAAGTTATAGAGATACT+AGG	-	chr1_4:61900492-61900511	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	61899005	61903285	61899005	ID=Msa0175780;Name=Msa0175780
chr1_4	mRNA	61899005	61903285	61899005	ID=Msa0175780-mRNA-1;Parent=Msa0175780;Name=Msa0175780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=216\|1\|1\|1\|1\|1\|6\|211\|299
chr1_4	exon	61899005	61899443	61899005	ID=Msa0175780-mRNA-1:exon:19810;Parent=Msa0175780-mRNA-1
chr1_4	exon	61901300	61901376	61901300	ID=Msa0175780-mRNA-1:exon:19811;Parent=Msa0175780-mRNA-1
chr1_4	exon	61901484	61901538	61901484	ID=Msa0175780-mRNA-1:exon:19812;Parent=Msa0175780-mRNA-1
chr1_4	exon	61901751	61901820	61901751	ID=Msa0175780-mRNA-1:exon:19813;Parent=Msa0175780-mRNA-1
chr1_4	exon	61901923	61901992	61901923	ID=Msa0175780-mRNA-1:exon:19814;Parent=Msa0175780-mRNA-1
chr1_4	exon	61902670	61903285	61902670	ID=Msa0175780-mRNA-1:exon:19815;Parent=Msa0175780-mRNA-1
chr1_4	five_prime_UTR	61899005	61899220	61899005	ID=Msa0175780-mRNA-1:five_prime_utr;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61899221	61899443	61899221	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61901300	61901376	61901300	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61901484	61901538	61901484	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61901751	61901820	61901751	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61901923	61901992	61901923	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	CDS	61902670	61903074	61902670	ID=Msa0175780-mRNA-1:cds;Parent=Msa0175780-mRNA-1
chr1_4	three_prime_UTR	61903075	61903285	61903075	ID=Msa0175780-mRNA-1:three_prime_utr;Parent=Msa0175780-mRNA-1

Gene Sequence

>Msa0175780

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGCTGCTGCTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTACCAAAGCCACGCCAAAAGCTATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGGCTTGGTAAGCAAGCTGGAAAAGATTTTGACGAGGGATGCAAAGATGGGTCATATCTTCTAGAAAGCCCTGGTACTGAAAACTCATCCCCAAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAAAGAGCATGTAAGATGTTGGCTGATCAATTTATCGCAACTATAGACACAGACATTCAAAAATTTCAAGACCTACCAAGTACCGAGCTAGGTGGAAATGGAATGCATGTTTCAGAAGTACCATATATTCTCCAGCCTCAAGGGGCTAACTGCTCCACAGAAAGTTGCCTAACATCACTTGAAAGTCTCAGAGGATTGACACTAGAAGGATCACCTAGTGGGTCAAAGAGGATGCTGGGCTTGGACTCCATGGTATCACCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAACCCAAGTCAATCCTCAAGGAATTGCAAGGTATGGAATGTAG

Protein sequence

>Msa0175780

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAAAAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIATIDTDIQKFQDLPSTELGGNGMHVSEVPYILQPQGANCSTESCLTSLESLRGLTLEGSPSGSKRMLGLDSMVSPLIWSETNMRTQGIHLTQVNPQGIARYGM*