Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135840 | KEH43991.1 | 96.095 | 589 | 9 | 1 | 1 | 589 | 1 | 575 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135840 | sp|Q43117|KPYA_RICCO | 57.280 | 522 | 197 | 5 | 70 | 588 | 84 | 582 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135840 | A0A072VQQ3 | 96.095 | 589 | 9 | 1 | 1 | 589 | 1 | 575 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135840 | Msa0301520 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0135840 | Msa0339020 | 0.805342 | 1.398104e-49 | -8.615850e-47 |
| Msa0135840 | Msa0435370 | 0.824682 | 7.070139e-54 | -8.615850e-47 |
| Msa0135840 | Msa0435420 | 0.817100 | 3.927804e-52 | -8.615850e-47 |
| Msa0135840 | Msa0435570 | 0.819166 | 1.339575e-52 | -8.615850e-47 |
| Msa0135840 | Msa1210040 | 0.802696 | 4.963258e-49 | -8.615850e-47 |
| Msa0135840 | Msa1259160 | 0.810888 | 9.215233e-51 | -8.615850e-47 |
| Msa0135840 | Msa1299650 | 0.808073 | 3.705234e-50 | -8.615850e-47 |
| Msa0135840 | Msa1344600 | 0.811142 | 8.117182e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135840 | MtrunA17_Chr1g0206791 | 96.117 | 515 | 6 | 1 | 75 | 589 | 1 | 501 | 0.0 | 1014 |
| Msa0135840 | MtrunA17_Chr1g0188101 | 55.534 | 524 | 205 | 5 | 70 | 588 | 69 | 569 | 0.0 | 592 |
| Msa0135840 | MtrunA17_Chr1g0202291 | 40.719 | 501 | 264 | 11 | 90 | 588 | 103 | 572 | 6.91e-110 | 340 |
| Msa0135840 | MtrunA17_Chr6g0463101 | 39.641 | 502 | 272 | 9 | 67 | 567 | 82 | 553 | 6.33e-108 | 335 |
| Msa0135840 | MtrunA17_Chr5g0400361 | 40.040 | 502 | 264 | 10 | 91 | 588 | 78 | 546 | 8.89e-105 | 327 |
| Msa0135840 | MtrunA17_Chr6g0448901 | 31.474 | 502 | 292 | 13 | 91 | 567 | 21 | 495 | 1.07e-70 | 236 |
| Msa0135840 | MtrunA17_Chr4g0043311 | 30.693 | 505 | 298 | 12 | 91 | 570 | 8 | 485 | 3.37e-66 | 224 |
| Msa0135840 | MtrunA17_Chr7g0263711 | 31.089 | 505 | 296 | 13 | 91 | 570 | 11 | 488 | 6.86e-65 | 220 |
| Msa0135840 | MtrunA17_Chr4g0043301 | 30.632 | 506 | 297 | 12 | 91 | 570 | 11 | 488 | 7.16e-64 | 218 |
| Msa0135840 | MtrunA17_Chr7g0265591 | 24.805 | 512 | 325 | 13 | 92 | 570 | 30 | 514 | 6.60e-42 | 158 |
| Msa0135840 | MtrunA17_Chr1g0197911 | 25.440 | 511 | 322 | 13 | 92 | 570 | 30 | 513 | 8.64e-41 | 155 |
| Msa0135840 | MtrunA17_Chr1g0179541 | 25.255 | 491 | 282 | 13 | 92 | 548 | 30 | 469 | 2.54e-38 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135840 | AT3G22960.1 | 57.611 | 519 | 194 | 5 | 73 | 588 | 100 | 595 | 0.0 | 610 |
| Msa0135840 | AT5G52920.1 | 38.800 | 500 | 275 | 8 | 90 | 588 | 110 | 579 | 1.25e-109 | 340 |
| Msa0135840 | AT1G32440.1 | 41.031 | 485 | 253 | 9 | 90 | 572 | 99 | 552 | 1.07e-103 | 325 |
| Msa0135840 | AT5G08570.1 | 30.189 | 530 | 309 | 15 | 63 | 567 | 2 | 495 | 7.79e-69 | 231 |
| Msa0135840 | AT5G08570.2 | 30.189 | 530 | 309 | 15 | 63 | 567 | 2 | 495 | 7.79e-69 | 231 |
| Msa0135840 | AT5G08570.3 | 30.189 | 530 | 309 | 15 | 63 | 567 | 2 | 495 | 7.79e-69 | 231 |
| Msa0135840 | AT5G63680.3 | 32.271 | 502 | 288 | 16 | 91 | 567 | 21 | 495 | 1.30e-68 | 231 |
| Msa0135840 | AT5G63680.1 | 32.271 | 502 | 288 | 16 | 91 | 567 | 21 | 495 | 1.30e-68 | 231 |
| Msa0135840 | AT5G63680.2 | 32.271 | 502 | 288 | 16 | 91 | 567 | 21 | 495 | 1.30e-68 | 231 |
| Msa0135840 | AT3G25960.1 | 30.847 | 496 | 300 | 13 | 91 | 570 | 17 | 485 | 3.69e-65 | 221 |
| Msa0135840 | AT3G04050.1 | 29.746 | 511 | 299 | 13 | 91 | 570 | 17 | 498 | 3.73e-64 | 219 |
| Msa0135840 | AT3G55650.1 | 29.666 | 509 | 302 | 13 | 91 | 570 | 17 | 498 | 8.46e-64 | 218 |
| Msa0135840 | AT5G56350.1 | 31.673 | 502 | 291 | 14 | 91 | 567 | 9 | 483 | 3.08e-63 | 216 |
| Msa0135840 | AT4G26390.1 | 30.677 | 502 | 296 | 14 | 91 | 567 | 8 | 482 | 1.28e-60 | 209 |
| Msa0135840 | AT3G55810.1 | 28.719 | 484 | 278 | 13 | 91 | 568 | 17 | 439 | 9.77e-50 | 180 |
| Msa0135840 | AT3G52990.1 | 24.805 | 512 | 325 | 13 | 92 | 570 | 30 | 514 | 1.07e-37 | 147 |
| Msa0135840 | AT2G36580.1 | 23.772 | 509 | 334 | 12 | 92 | 570 | 30 | 514 | 6.49e-35 | 139 |
| Msa0135840 | AT3G52990.2 | 23.975 | 488 | 311 | 13 | 116 | 570 | 1 | 461 | 1.19e-32 | 131 |
| Msa0135840 | AT3G49160.3 | 36.641 | 131 | 76 | 3 | 264 | 388 | 446 | 575 | 4.33e-17 | 85.5 |
| Msa0135840 | AT3G49160.1 | 36.641 | 131 | 76 | 3 | 264 | 388 | 534 | 663 | 5.00e-17 | 85.5 |
Find 146 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCAAATCTTGGATTTA+AGG | 0.172129 | 1_3:+67605074 | Msa0135840:CDS |
| AGTGCAATATAGATAGATTT+TGG | 0.180972 | 1_3:-67604881 | None:intergenic |
| CCAGAGCCAAATGTAGTTTC+TGG | 0.243805 | 1_3:+67606415 | Msa0135840:CDS |
| AATCATCGTGTTTCAAATCT+TGG | 0.260002 | 1_3:+67605066 | Msa0135840:CDS |
| AAGAAGCTTAATGAGGAAAA+TGG | 0.264950 | 1_3:+67605396 | Msa0135840:CDS |
| GGGAAGTTTGGGTTTGGATA+TGG | 0.265237 | 1_3:+67605185 | Msa0135840:CDS |
| TGTTGCATTGGAGGGAAGTT+TGG | 0.281638 | 1_3:+67605173 | Msa0135840:CDS |
| AAGCGAAGATTTATTGTAAT+AGG | 0.286700 | 1_3:-67607661 | None:intergenic |
| AATGGCATCGTGATGTTATT+AGG | 0.306322 | 1_3:+67605367 | Msa0135840:CDS |
| GGTTTCAGAAGGAGAATTAA+TGG | 0.312589 | 1_3:+67605206 | Msa0135840:CDS |
| GTTTCAAATCTTGGATTTAA+GGG | 0.314853 | 1_3:+67605075 | Msa0135840:CDS |
| TTACATAAGGACAACAAAAT+AGG | 0.319211 | 1_3:-67609146 | None:intergenic |
| GCAATGATGCTCCAAGTTTA+TGG | 0.326757 | 1_3:-67607864 | None:intergenic |
| TGGTCCTGCTTGTAGTTCAT+TGG | 0.339798 | 1_3:+67605275 | Msa0135840:CDS |
| GTGAGGCAATCTAGTATATC+TGG | 0.340951 | 1_3:+67605024 | Msa0135840:CDS |
| ACTTTGGTCGCACAACAAAC+TGG | 0.359599 | 1_3:-67604812 | None:intergenic |
| GTTGCATTGGAGGGAAGTTT+GGG | 0.365799 | 1_3:+67605174 | Msa0135840:CDS |
| CAGATTCATGTTGTTGATCA+TGG | 0.377261 | 1_3:+67605456 | Msa0135840:CDS |
| AATTTCAGGAAGATTCAATA+TGG | 0.381587 | 1_3:+67606092 | Msa0135840:intron |
| GAGTCAGCTATTGGTTCATT+TGG | 0.382199 | 1_3:+67607754 | Msa0135840:CDS |
| ATGCAACTGTGCTGTTGAAA+TGG | 0.385400 | 1_3:+67607909 | Msa0135840:CDS |
| CAGCCATGCATTCTAGATAA+TGG | 0.388811 | 1_3:-67609037 | None:intergenic |
| ATCTCTCCAGAAACTACATT+TGG | 0.404637 | 1_3:-67606421 | None:intergenic |
| TGAGCAAATTCCTACAGTTC+AGG | 0.405326 | 1_3:+67607431 | Msa0135840:CDS |
| CAACCATGCTGACTCTGTTA+AGG | 0.410845 | 1_3:+67607104 | Msa0135840:CDS |
| TATTTCCTCCAGGTTATGAA+TGG | 0.413481 | 1_3:-67607349 | None:intergenic |
| GGAGAGATGGAAAGCTTGTC+AGG | 0.415630 | 1_3:+67606436 | Msa0135840:CDS |
| TTGTCTGGTGAGTCAGCTAT+TGG | 0.419272 | 1_3:+67607745 | Msa0135840:CDS |
| TGGTCTTAACCTGAATTGAT+TGG | 0.425014 | 1_3:-67609017 | None:intergenic |
| AAAGCAAAGATGGGAGGATC+TGG | 0.425744 | 1_3:-67608796 | None:intergenic |
| GGTGATGAAATTGTTATTGA+TGG | 0.426567 | 1_3:+67606312 | Msa0135840:CDS |
| TTTCAGATCCATAAAAGTAT+TGG | 0.431591 | 1_3:+67607305 | Msa0135840:intron |
| TGTCGTAATATTCTTACATA+AGG | 0.431601 | 1_3:-67609159 | None:intergenic |
| TCCTGCTTGTAGTTCATTGG+AGG | 0.431662 | 1_3:+67605278 | Msa0135840:CDS |
| ATTGGAGGGAAGTTTGGGTT+TGG | 0.433837 | 1_3:+67605179 | Msa0135840:CDS |
| CCAGAAACTACATTTGGCTC+TGG | 0.435258 | 1_3:-67606415 | None:intergenic |
| ATCTTTGTTTACACAAAGCA+TGG | 0.442882 | 1_3:+67608742 | Msa0135840:CDS |
| CTTCTCAATCACCATAAACT+TGG | 0.443356 | 1_3:+67607853 | Msa0135840:CDS |
| AATGGCTCTGAATTTGCAAT+GGG | 0.444315 | 1_3:+67608840 | Msa0135840:CDS |
| ATTTGCTCAGTGATGCAATC+TGG | 0.453282 | 1_3:-67607886 | None:intergenic |
| AATGGCTCTCCAATCAATTC+AGG | 0.456525 | 1_3:+67609008 | Msa0135840:CDS |
| GCGGATGCTTTGATGTTGTC+TGG | 0.457261 | 1_3:+67607730 | Msa0135840:CDS |
| ATCGTCAGTGAAAGCAAAGA+TGG | 0.468784 | 1_3:-67608806 | None:intergenic |
| GATTGGGCTGATATAAACTT+TGG | 0.469823 | 1_3:+67607042 | Msa0135840:CDS |
| TTGCACTAAACTTCACAACT+TGG | 0.470710 | 1_3:+67604897 | Msa0135840:five_prime_UTR |
| GGCATCCACACCAAGTTTGT+TGG | 0.470716 | 1_3:-67608719 | None:intergenic |
| ATTGGAGGATCTAGAGAAGT+TGG | 0.472176 | 1_3:+67605293 | Msa0135840:CDS |
| GTTCAGCTTATGAAATCTAA+AGG | 0.476188 | 1_3:+67608922 | Msa0135840:CDS |
| GGTTAGAGCAACAGTGGAAG+TGG | 0.479470 | 1_3:+67605116 | Msa0135840:CDS |
| GTCCAAACATAAAACATTGA+CGG | 0.482651 | 1_3:+67604833 | Msa0135840:five_prime_UTR |
| ACAGTTCAAGCAAACTATCC+AGG | 0.485658 | 1_3:+67606154 | Msa0135840:CDS |
| TGAATTGATTGGAGAGCCAT+TGG | 0.486822 | 1_3:-67609006 | None:intergenic |
| CTTAGAATCCATTCATAACC+TGG | 0.490324 | 1_3:+67607341 | Msa0135840:CDS |
| CAAAGGAGATGTTGTTCTAG+TGG | 0.496328 | 1_3:+67608954 | Msa0135840:CDS |
| ATGCTTTGTGTAAACAAAGA+TGG | 0.496846 | 1_3:-67608740 | None:intergenic |
| GAAGATTAAGAAGCTTAATG+AGG | 0.499257 | 1_3:+67605389 | Msa0135840:CDS |
| AGAAGGAGAATTAATGGTGA+AGG | 0.504002 | 1_3:+67605212 | Msa0135840:CDS |
| GGATCTAGAGAAGTTGGCAT+TGG | 0.506649 | 1_3:+67605299 | Msa0135840:CDS |
| TGCAACTGTGCTGTTGAAAT+GGG | 0.507547 | 1_3:+67607910 | Msa0135840:CDS |
| TGATTGTCAGGTATTGAAGT+AGG | 0.508370 | 1_3:+67606291 | Msa0135840:intron |
| GATTTAAAGAACTACCTCTC+TGG | 0.508547 | 1_3:+67607126 | Msa0135840:CDS |
| TTACACAAAGCATGGATACA+TGG | 0.512647 | 1_3:+67608750 | Msa0135840:CDS |
| TATACCTTTGTTGATAGAGT+GGG | 0.513572 | 1_3:-67606474 | None:intergenic |
| ACAGAAAGCACTGGCAGTGT+TGG | 0.513689 | 1_3:+67607777 | Msa0135840:CDS |
| AAGCTTTCACTATTTCCTCC+AGG | 0.514751 | 1_3:-67607359 | None:intergenic |
| CTTTGGTCGCACAACAAACT+GGG | 0.515183 | 1_3:-67604811 | None:intergenic |
| AGCTGAGAAGCTACAATCAC+TGG | 0.516804 | 1_3:-67607489 | None:intergenic |
| ACCTCGGCACGAGTTGGTGT+TGG | 0.517994 | 1_3:-67607534 | None:intergenic |
| TAGTTTGCTTGAACTGTGAA+TGG | 0.518961 | 1_3:-67606148 | None:intergenic |
| AAGAAGCAATGTTGCATTGG+AGG | 0.519750 | 1_3:+67605164 | Msa0135840:CDS |
| AAATGTAGTTTCTGGAGAGA+TGG | 0.520733 | 1_3:+67606423 | Msa0135840:CDS |
| GAAGGAGAATTAATGGTGAA+GGG | 0.521643 | 1_3:+67605213 | Msa0135840:CDS |
| GATCTAGAGAAGTTGGCATT+GGG | 0.523010 | 1_3:+67605300 | Msa0135840:CDS |
| CAGCATGGTTGACAAAGGAT+AGG | 0.523387 | 1_3:-67607092 | None:intergenic |
| GAAAGCTTCTGACGGAATCA+TGG | 0.527952 | 1_3:+67607374 | Msa0135840:CDS |
| GTAGAATGGAATCATGGAGT+AGG | 0.529105 | 1_3:+67607812 | Msa0135840:CDS |
| AAGAAGAAGCAATGTTGCAT+TGG | 0.529627 | 1_3:+67605161 | Msa0135840:CDS |
| TGATCATGGAGCACCTTCCT+CGG | 0.529749 | 1_3:+67605470 | Msa0135840:CDS |
| ATTATATCCTCCTGAACTGT+AGG | 0.532477 | 1_3:-67607441 | None:intergenic |
| GCCATTGGAGTTGAACGTGT+TGG | 0.532724 | 1_3:-67608991 | None:intergenic |
| GAATGGCTCTGAATTTGCAA+TGG | 0.534437 | 1_3:+67608839 | Msa0135840:CDS |
| GGATATGACTAGCAGTAGAA+TGG | 0.541987 | 1_3:+67607798 | Msa0135840:CDS |
| CTGTCTGCAGCCAACAAACT+TGG | 0.543406 | 1_3:+67608709 | Msa0135840:intron |
| ATGGTAGCTCGAGGTGACCT+TGG | 0.545680 | 1_3:+67607393 | Msa0135840:CDS |
| ACCTCAACTTTAACCGAGGA+AGG | 0.546772 | 1_3:-67605483 | None:intergenic |
| ACCTTCCTCGGTTAAAGTTG+AGG | 0.547363 | 1_3:+67605482 | Msa0135840:CDS |
| GATGAAATTGTTATTGATGG+TGG | 0.547715 | 1_3:+67606315 | Msa0135840:CDS |
| CAGAAACTACATTTGGCTCT+GGG | 0.549518 | 1_3:-67606414 | None:intergenic |
| TGTGTCATGGTACTAGAGAA+TGG | 0.550320 | 1_3:+67605349 | Msa0135840:CDS |
| GGTTTGGATATGGTTTCAGA+AGG | 0.551120 | 1_3:+67605195 | Msa0135840:CDS |
| TCTGATAAATCAACAAGAAG+TGG | 0.551849 | 1_3:-67608871 | None:intergenic |
| CTAGCAGTAGAATGGAATCA+TGG | 0.554034 | 1_3:+67607806 | Msa0135840:CDS |
| TGGGAGGAATGAATGTTGCT+AGG | 0.558127 | 1_3:+67605319 | Msa0135840:CDS |
| TCAAAACCATGGCCATGTTG+AGG | 0.561531 | 1_3:-67604975 | None:intergenic |
| AGCATGGTTGACAAAGGATA+GGG | 0.564531 | 1_3:-67607091 | None:intergenic |
| CGATGATTCAAATCAAGTGA+AGG | 0.566317 | 1_3:-67605051 | None:intergenic |
| ACTGTAGGAATTTGCTCAAG+TGG | 0.570822 | 1_3:-67607426 | None:intergenic |
| GGGAAAACAACATGTGGTCA+AGG | 0.572523 | 1_3:+67605095 | Msa0135840:CDS |
| CGTTGTAAGTGCATAGATGC+TGG | 0.572775 | 1_3:+67606381 | Msa0135840:CDS |
| GATGATTCAAATCAAGTGAA+GGG | 0.576702 | 1_3:-67605050 | None:intergenic |
| TAGAATGGAATCATGGAGTA+GGG | 0.577518 | 1_3:+67607813 | Msa0135840:CDS |
| AATTGTTATTGATGGTGGAA+TGG | 0.581842 | 1_3:+67606320 | Msa0135840:CDS |
| ACAAAGCTTGTGTGTACTGT+TGG | 0.581960 | 1_3:+67605255 | Msa0135840:CDS |
| TGAAGCAGTTCGACAGTACG+CGG | 0.582389 | 1_3:+67607711 | Msa0135840:CDS |
| AGACCATTATCTAGAATGCA+TGG | 0.585129 | 1_3:+67609034 | Msa0135840:exon |
| AGAAGCAATGTTGCATTGGA+GGG | 0.585550 | 1_3:+67605165 | Msa0135840:CDS |
| TCTAAAGGATTGATCAACAA+AGG | 0.587186 | 1_3:+67608937 | Msa0135840:CDS |
| AACAGTGGAAGTGGGTGGTG+TGG | 0.588106 | 1_3:+67605125 | Msa0135840:CDS |
| TCCAACACGTTCAACTCCAA+TGG | 0.588423 | 1_3:+67608990 | Msa0135840:CDS |
| AATCCTTAACAGAGTCAGCA+TGG | 0.588767 | 1_3:-67607107 | None:intergenic |
| ATATACCTTTGTTGATAGAG+TGG | 0.588891 | 1_3:-67606475 | None:intergenic |
| TTCATTTGGACAGAAAGCAC+TGG | 0.597753 | 1_3:+67607768 | Msa0135840:CDS |
| ATAAACTTTGGTATAGCTGA+GGG | 0.604872 | 1_3:+67607054 | Msa0135840:CDS |
| TATAAACTTTGGTATAGCTG+AGG | 0.608857 | 1_3:+67607053 | Msa0135840:CDS |
| AATGGAATCATGGAGTAGGG+AGG | 0.609034 | 1_3:+67607816 | Msa0135840:CDS |
| AGTGGAAGTGGGTGGTGTGG+AGG | 0.609147 | 1_3:+67605128 | Msa0135840:CDS |
| TCGTCAGTGAAAGCAAAGAT+GGG | 0.611395 | 1_3:-67608805 | None:intergenic |
| ATATACTAGATTGCCTCACA+AGG | 0.615930 | 1_3:-67605020 | None:intergenic |
| CAAGTGGTATTTCGACTCCA+AGG | 0.615969 | 1_3:-67607410 | None:intergenic |
| TATTACCTCAACTTTAACCG+AGG | 0.617662 | 1_3:-67605487 | None:intergenic |
| TGCAGCCAACAAACTTGGTG+TGG | 0.621182 | 1_3:+67608714 | Msa0135840:intron |
| CTAGAGAAGTTGGCATTGGG+AGG | 0.622352 | 1_3:+67605303 | Msa0135840:CDS |
| TGACGATGAAAGTACTCGAA+TGG | 0.623409 | 1_3:+67608822 | Msa0135840:CDS |
| CATTGTTGACTTCAAAACCA+TGG | 0.623754 | 1_3:-67604986 | None:intergenic |
| GCAAATTCCTACAGTTCAGG+AGG | 0.625155 | 1_3:+67607434 | Msa0135840:CDS |
| TCCTCCAATGAACTACAAGC+AGG | 0.625603 | 1_3:-67605279 | None:intergenic |
| TCCAACACCAACTCGTGCCG+AGG | 0.625829 | 1_3:+67607533 | Msa0135840:CDS |
| GTTAGAGCAACAGTGGAAGT+GGG | 0.631991 | 1_3:+67605117 | Msa0135840:CDS |
| TTGCCTCACAAGGCTTGAAG+CGG | 0.636078 | 1_3:-67605010 | None:intergenic |
| ATACCTTTGTTGATAGAGTG+GGG | 0.640435 | 1_3:-67606473 | None:intergenic |
| TGGCCGCTTCAAGCCTTGTG+AGG | 0.643829 | 1_3:+67605007 | Msa0135840:CDS |
| AGAGTCAGCATGGTTGACAA+AGG | 0.644631 | 1_3:-67607097 | None:intergenic |
| ATTTAAGGGAAAACAACATG+TGG | 0.644995 | 1_3:+67605089 | Msa0135840:CDS |
| TCTGTTATGATTGATACTGA+AGG | 0.647107 | 1_3:+67605429 | Msa0135840:CDS |
| GAAATAGTGAAAGCTTCTGA+CGG | 0.651977 | 1_3:+67607366 | Msa0135840:CDS |
| GACGGAATCATGGTAGCTCG+AGG | 0.652969 | 1_3:+67607384 | Msa0135840:CDS |
| GGTCAAGGTTAGAGCAACAG+TGG | 0.660617 | 1_3:+67605110 | Msa0135840:CDS |
| GCTAGGCTTAACATGTGTCA+TGG | 0.662490 | 1_3:+67605336 | Msa0135840:CDS |
| GGTCGCACAACAAACTGGGG+AGG | 0.662654 | 1_3:-67604807 | None:intergenic |
| GAGATGGAAAGCTTGTCAGG+AGG | 0.673618 | 1_3:+67606439 | Msa0135840:CDS |
| TCAGTGAAAGCAAAGATGGG+AGG | 0.685783 | 1_3:-67608802 | None:intergenic |
| GCTCCCCACTCTATCAACAA+AGG | 0.690309 | 1_3:+67606470 | Msa0135840:CDS |
| AGAGCAACAGTGGAAGTGGG+TGG | 0.693208 | 1_3:+67605120 | Msa0135840:CDS |
| AGAATCCATTCATAACCTGG+AGG | 0.710102 | 1_3:+67607344 | Msa0135840:CDS |
| TTTGGTCGCACAACAAACTG+GGG | 0.719904 | 1_3:-67604810 | None:intergenic |
| ATGGCTCTGAATTTGCAATG+GGG | 0.789601 | 1_3:+67608841 | Msa0135840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTAAAATTGTAAAA+GGG | - | chr1_3:67606820-67606839 | None:intergenic | 10.0% |
| !! | AATTATACTAAAATTGTAAA+AGG | - | chr1_3:67606821-67606840 | None:intergenic | 10.0% |
| !! | AATCTGAATTAAAATATAAT+CGG | - | chr1_3:67608050-67608069 | None:intergenic | 10.0% |
| !!! | TTTCATAAGTTTTCAAAAAA+CGG | - | chr1_3:67605595-67605614 | None:intergenic | 15.0% |
| !! | AAACTTATGAAAACATATTA+TGG | + | chr1_3:67605603-67605622 | Msa0135840:intron | 15.0% |
| !! | GATAGCTTATAAAATTAATT+TGG | + | chr1_3:67605668-67605687 | Msa0135840:intron | 15.0% |
| !! | ATAATAACATGTATATTCAT+CGG | - | chr1_3:67606242-67606261 | None:intergenic | 15.0% |
| !! | ACAAAAAAAAATATCAAACA+GGG | - | chr1_3:67606608-67606627 | None:intergenic | 15.0% |
| !! | AACAAAAAAAAATATCAAAC+AGG | - | chr1_3:67606609-67606628 | None:intergenic | 15.0% |
| !! | TTATAAGATAAAACATATCA+AGG | - | chr1_3:67607010-67607029 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGTTATGTT+TGG | + | chr1_3:67608208-67608227 | Msa0135840:intron | 15.0% |
| !!! | AAATTGATTTTGTTATGTTT+GGG | + | chr1_3:67608209-67608228 | Msa0135840:intron | 15.0% |
| !! | ACTTATAATTAGCATATGTT+AGG | + | chr1_3:67605515-67605534 | Msa0135840:intron | 20.0% |
| !! | CTTATAATTAGCATATGTTA+GGG | + | chr1_3:67605516-67605535 | Msa0135840:intron | 20.0% |
| !!! | ATAAGTTATTTCTACAACAA+GGG | - | chr1_3:67605703-67605722 | None:intergenic | 20.0% |
| !!! | AATAAGTTATTTCTACAACA+AGG | - | chr1_3:67605704-67605723 | None:intergenic | 20.0% |
| !!! | CATCTTATTTTTTTAAAGCT+CGG | - | chr1_3:67605979-67605998 | None:intergenic | 20.0% |
| !! | TTTGTGTTTGAATTTGAATT+GGG | + | chr1_3:67606049-67606068 | Msa0135840:intron | 20.0% |
| !! | CAAAAAAAAATATCAAACAG+GGG | - | chr1_3:67606607-67606626 | None:intergenic | 20.0% |
| !! | AATTTAACTATCTTGACAAA+TGG | - | chr1_3:67606673-67606692 | None:intergenic | 20.0% |
| !!! | GTGAACTTTTTTCTTTTTTT+TGG | + | chr1_3:67606945-67606964 | Msa0135840:intron | 20.0% |
| !! | TATCTTATAAATTTATCCAC+AGG | + | chr1_3:67607020-67607039 | Msa0135840:intron | 20.0% |
| !! | AAACTGTATAAATGATTCTT+CGG | - | chr1_3:67607183-67607202 | None:intergenic | 20.0% |
| !!! | ATCAATATAATTTAGCCTTT+TGG | + | chr1_3:67607203-67607222 | Msa0135840:intron | 20.0% |
| !! | CACAAATTAAGAATGTTAAA+TGG | + | chr1_3:67607279-67607298 | Msa0135840:intron | 20.0% |
| !!! | TGTATAAATTGATTTTACCT+CGG | - | chr1_3:67607553-67607572 | None:intergenic | 20.0% |
| !! | GAAAACTTATTATCATAGAT+AGG | - | chr1_3:67607607-67607626 | None:intergenic | 20.0% |
| !! | TAAAGTACAAATTTCATGTT+TGG | - | chr1_3:67608098-67608117 | None:intergenic | 20.0% |
| !! | TTGTACTTTATGATTGTAAT+TGG | + | chr1_3:67608108-67608127 | Msa0135840:intron | 20.0% |
| !! | AGTCTTTCAAAATTGAATTT+GGG | - | chr1_3:67608186-67608205 | None:intergenic | 20.0% |
| !! | AAGTCTTTCAAAATTGAATT+TGG | - | chr1_3:67608187-67608206 | None:intergenic | 20.0% |
| !!! | CTTCAAATTAGAAAGAATTT+TGG | - | chr1_3:67608263-67608282 | None:intergenic | 20.0% |
| !! | TCTTTGCTTCAAAAAAAAAA+AGG | - | chr1_3:67608464-67608483 | None:intergenic | 20.0% |
| !! | TCAGATAAATGATTTATGTT+TGG | - | chr1_3:67608548-67608567 | None:intergenic | 20.0% |
| !! | AATGTTTTATGTTTGGACTT+TGG | - | chr1_3:67604831-67604850 | None:intergenic | 25.0% |
| !! | TGCAATATAGATAGATTTTG+GGG | - | chr1_3:67604882-67604901 | None:intergenic | 25.0% |
| !! | GTGCAATATAGATAGATTTT+GGG | - | chr1_3:67604883-67604902 | None:intergenic | 25.0% |
| !! | AGTGCAATATAGATAGATTT+TGG | - | chr1_3:67604884-67604903 | None:intergenic | 25.0% |
| ! | TGTTTCAAATCTTGGATTTA+AGG | + | chr1_3:67605074-67605093 | Msa0135840:CDS | 25.0% |
| ! | GTTTCAAATCTTGGATTTAA+GGG | + | chr1_3:67605075-67605094 | Msa0135840:CDS | 25.0% |
| ! | ACTTATTTGAGCATATCTAT+CGG | + | chr1_3:67605552-67605571 | Msa0135840:intron | 25.0% |
| !!! | CGAGCTTTAAAAAAATAAGA+TGG | + | chr1_3:67605977-67605996 | Msa0135840:intron | 25.0% |
| !! | ATAAGTTTTGCATCTAAACA+GGG | + | chr1_3:67606003-67606022 | Msa0135840:intron | 25.0% |
| ! | GTTTGTGTTTGAATTTGAAT+TGG | + | chr1_3:67606048-67606067 | Msa0135840:intron | 25.0% |
| ! | AATTTCAGGAAGATTCAATA+TGG | + | chr1_3:67606092-67606111 | Msa0135840:intron | 25.0% |
| ! | ATTCAAGTGAATTCTGAATT+TGG | + | chr1_3:67606264-67606283 | Msa0135840:intron | 25.0% |
| !! | TTTGTTGTCATTGAAAAAAC+TGG | + | chr1_3:67606348-67606367 | Msa0135840:CDS | 25.0% |
| ! | TGATCTTAACAAAATAAGTG+CGG | - | chr1_3:67606524-67606543 | None:intergenic | 25.0% |
| !!! | TTATTTTGTTAAGATCATGC+AGG | + | chr1_3:67606527-67606546 | Msa0135840:intron | 25.0% |
| ! | TGGTATAATTCTTTGAATAG+TGG | + | chr1_3:67606965-67606984 | Msa0135840:intron | 25.0% |
| ! | TATAAATTTATCCACAGGAT+TGG | + | chr1_3:67607025-67607044 | Msa0135840:intron | 25.0% |
| ! | ATAAATTTATCCACAGGATT+GGG | + | chr1_3:67607026-67607045 | Msa0135840:intron | 25.0% |
| !! | TTTCAGATCCATAAAAGTAT+TGG | + | chr1_3:67607305-67607324 | Msa0135840:intron | 25.0% |
| !! | TATCTTTGCCAATACTTTTA+TGG | - | chr1_3:67607316-67607335 | None:intergenic | 25.0% |
| !! | TAAGTTTTCTGTTTTCCTTT+TGG | + | chr1_3:67607618-67607637 | Msa0135840:intron | 25.0% |
| ! | AAGCGAAGATTTATTGTAAT+AGG | - | chr1_3:67607664-67607683 | None:intergenic | 25.0% |
| !! | CAAATTAGAAAGAATTTTGG+AGG | - | chr1_3:67608260-67608279 | None:intergenic | 25.0% |
| ! | GATTTATGTTTGGTTATGTT+CGG | - | chr1_3:67608538-67608557 | None:intergenic | 25.0% |
| !!! | ACGTGTTTTTGTATTTTGTT+TGG | + | chr1_3:67609077-67609096 | Msa0135840:three_prime_UTR | 25.0% |
| !!! | GTTTTTGTATTTTGTTTGGT+TGG | + | chr1_3:67609081-67609100 | Msa0135840:three_prime_UTR | 25.0% |
| ! | TTACATAAGGACAACAAAAT+AGG | - | chr1_3:67609149-67609168 | None:intergenic | 25.0% |
| ! | TGTCGTAATATTCTTACATA+AGG | - | chr1_3:67609162-67609181 | None:intergenic | 25.0% |
| GTCCAAACATAAAACATTGA+CGG | + | chr1_3:67604833-67604852 | Msa0135840:five_prime_UTR | 30.0% | |
| !!! | TATAGATAGATTTTGGGGTT+TGG | - | chr1_3:67604877-67604896 | None:intergenic | 30.0% |
| GATGATTCAAATCAAGTGAA+GGG | - | chr1_3:67605053-67605072 | None:intergenic | 30.0% | |
| AATCATCGTGTTTCAAATCT+TGG | + | chr1_3:67605066-67605085 | Msa0135840:CDS | 30.0% | |
| ATTTAAGGGAAAACAACATG+TGG | + | chr1_3:67605089-67605108 | Msa0135840:CDS | 30.0% | |
| GAAGATTAAGAAGCTTAATG+AGG | + | chr1_3:67605389-67605408 | Msa0135840:CDS | 30.0% | |
| AAGAAGCTTAATGAGGAAAA+TGG | + | chr1_3:67605396-67605415 | Msa0135840:CDS | 30.0% | |
| TCTGTTATGATTGATACTGA+AGG | + | chr1_3:67605429-67605448 | Msa0135840:CDS | 30.0% | |
| AAGCTATCATAGAGAACTTA+TGG | - | chr1_3:67605656-67605675 | None:intergenic | 30.0% | |
| ! | GATAAGTTTTGCATCTAAAC+AGG | + | chr1_3:67606002-67606021 | Msa0135840:intron | 30.0% |
| CCTGAAATTGAAACAAGAAT+TGG | - | chr1_3:67606081-67606100 | None:intergenic | 30.0% | |
| ! | CCAATTCTTGTTTCAATTTC+AGG | + | chr1_3:67606078-67606097 | Msa0135840:intron | 30.0% |
| ! | TTTACTGCTGAACATTTTGT+GGG | + | chr1_3:67606118-67606137 | Msa0135840:CDS | 30.0% |
| GAATTTGGTTAATGATTGTC+AGG | + | chr1_3:67606279-67606298 | Msa0135840:intron | 30.0% | |
| ! | GGTGATGAAATTGTTATTGA+TGG | + | chr1_3:67606312-67606331 | Msa0135840:CDS | 30.0% |
| ! | GATGAAATTGTTATTGATGG+TGG | + | chr1_3:67606315-67606334 | Msa0135840:CDS | 30.0% |
| !! | AATTGTTATTGATGGTGGAA+TGG | + | chr1_3:67606320-67606339 | Msa0135840:CDS | 30.0% |
| ! | TATACCTTTGTTGATAGAGT+GGG | - | chr1_3:67606477-67606496 | None:intergenic | 30.0% |
| ! | ATATACCTTTGTTGATAGAG+TGG | - | chr1_3:67606478-67606497 | None:intergenic | 30.0% |
| GATCTTAACAAAATAAGTGC+GGG | - | chr1_3:67606523-67606542 | None:intergenic | 30.0% | |
| ! | AAAATATCAAACAGGGGTTT+TGG | - | chr1_3:67606601-67606620 | None:intergenic | 30.0% |
| ! | TTCTAAAGAGCATGAATTAC+TGG | + | chr1_3:67606752-67606771 | Msa0135840:intron | 30.0% |
| AACATTTACTCGGTAATTGA+AGG | - | chr1_3:67606786-67606805 | None:intergenic | 30.0% | |
| AAGACTTTGCAACATTTACT+CGG | - | chr1_3:67606796-67606815 | None:intergenic | 30.0% | |
| TATAAACTTTGGTATAGCTG+AGG | + | chr1_3:67607053-67607072 | Msa0135840:CDS | 30.0% | |
| ATAAACTTTGGTATAGCTGA+GGG | + | chr1_3:67607054-67607073 | Msa0135840:CDS | 30.0% | |
| ACTAAGTTAAGCATTCCAAA+AGG | - | chr1_3:67607636-67607655 | None:intergenic | 30.0% | |
| !! | TCTTCGCTTTTATGCAATAA+AGG | + | chr1_3:67607675-67607694 | Msa0135840:CDS | 30.0% |
| ACATGCACTAATATAGTTAC+AGG | - | chr1_3:67607958-67607977 | None:intergenic | 30.0% | |
| ! | TGCATGTATAGTTTCACTTT+TGG | + | chr1_3:67607971-67607990 | Msa0135840:intron | 30.0% |
| !! | GCATGTATAGTTTCACTTTT+GGG | + | chr1_3:67607972-67607991 | Msa0135840:intron | 30.0% |
| !! | CATGTATAGTTTCACTTTTG+GGG | + | chr1_3:67607973-67607992 | Msa0135840:intron | 30.0% |
| ! | TTCTAATTTGAAGCAAAGAG+CGG | + | chr1_3:67608270-67608289 | Msa0135840:intron | 30.0% |
| TCAAAAAAAAAAAGGCAACC+CGG | - | chr1_3:67608456-67608475 | None:intergenic | 30.0% | |
| !! | GTGTCTATTTGATTTTACTG+TGG | - | chr1_3:67608630-67608649 | None:intergenic | 30.0% |
| ATGCTTTGTGTAAACAAAGA+TGG | - | chr1_3:67608743-67608762 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTTACACAAAGCA+TGG | + | chr1_3:67608742-67608761 | Msa0135840:CDS | 30.0% |
| TCTGATAAATCAACAAGAAG+TGG | - | chr1_3:67608874-67608893 | None:intergenic | 30.0% | |
| GTTCAGCTTATGAAATCTAA+AGG | + | chr1_3:67608922-67608941 | Msa0135840:CDS | 30.0% | |
| TCTAAAGGATTGATCAACAA+AGG | + | chr1_3:67608937-67608956 | Msa0135840:CDS | 30.0% | |
| !! | TTTGTATTTTGTTTGGTTGG+AGG | + | chr1_3:67609084-67609103 | Msa0135840:three_prime_UTR | 30.0% |
| ! | CTCCGTCAATGTTTTATGTT+TGG | - | chr1_3:67604838-67604857 | None:intergenic | 35.0% |
| TTGCACTAAACTTCACAACT+TGG | + | chr1_3:67604897-67604916 | Msa0135840:five_prime_UTR | 35.0% | |
| !! | CATTGTTGACTTCAAAACCA+TGG | - | chr1_3:67604989-67605008 | None:intergenic | 35.0% |
| !!! | CATGGTTTTGAAGTCAACAA+TGG | + | chr1_3:67604987-67605006 | Msa0135840:CDS | 35.0% |
| ATATACTAGATTGCCTCACA+AGG | - | chr1_3:67605023-67605042 | None:intergenic | 35.0% | |
| CGATGATTCAAATCAAGTGA+AGG | - | chr1_3:67605054-67605073 | None:intergenic | 35.0% | |
| AAGAAGAAGCAATGTTGCAT+TGG | + | chr1_3:67605161-67605180 | Msa0135840:CDS | 35.0% | |
| GGTTTCAGAAGGAGAATTAA+TGG | + | chr1_3:67605206-67605225 | Msa0135840:CDS | 35.0% | |
| AGAAGGAGAATTAATGGTGA+AGG | + | chr1_3:67605212-67605231 | Msa0135840:CDS | 35.0% | |
| GAAGGAGAATTAATGGTGAA+GGG | + | chr1_3:67605213-67605232 | Msa0135840:CDS | 35.0% | |
| !! | TTAATGGTGAAGGGTTTTAG+AGG | + | chr1_3:67605222-67605241 | Msa0135840:CDS | 35.0% |
| !!! | TAATGGTGAAGGGTTTTAGA+GGG | + | chr1_3:67605223-67605242 | Msa0135840:CDS | 35.0% |
| AATGGCATCGTGATGTTATT+AGG | + | chr1_3:67605367-67605386 | Msa0135840:CDS | 35.0% | |
| CAGATTCATGTTGTTGATCA+TGG | + | chr1_3:67605456-67605475 | Msa0135840:CDS | 35.0% | |
| TATTACCTCAACTTTAACCG+AGG | - | chr1_3:67605490-67605509 | None:intergenic | 35.0% | |
| TCAAATAAGTCAATCCAGAG+AGG | - | chr1_3:67605542-67605561 | None:intergenic | 35.0% | |
| ! | GTTTACTGCTGAACATTTTG+TGG | + | chr1_3:67606117-67606136 | Msa0135840:CDS | 35.0% |
| !! | TAGTTTGCTTGAACTGTGAA+TGG | - | chr1_3:67606151-67606170 | None:intergenic | 35.0% |
| !! | TGATTGTCAGGTATTGAAGT+AGG | + | chr1_3:67606291-67606310 | Msa0135840:intron | 35.0% |
| ATCTCTCCAGAAACTACATT+TGG | - | chr1_3:67606424-67606443 | None:intergenic | 35.0% | |
| ! | AAATGTAGTTTCTGGAGAGA+TGG | + | chr1_3:67606423-67606442 | Msa0135840:CDS | 35.0% |
| ! | ATACCTTTGTTGATAGAGTG+GGG | - | chr1_3:67606476-67606495 | None:intergenic | 35.0% |
| ACAAAATAAGTGCGGGAAAA+AGG | - | chr1_3:67606516-67606535 | None:intergenic | 35.0% | |
| ! | TGCAGGACAAATTTTTCATC+CGG | + | chr1_3:67606544-67606563 | Msa0135840:intron | 35.0% |
| TCATATAGAAGTAACTGTCC+CGG | - | chr1_3:67606566-67606585 | None:intergenic | 35.0% | |
| ! | AAAGAGCATGAATTACTGGT+AGG | + | chr1_3:67606756-67606775 | Msa0135840:intron | 35.0% |
| ! | GTGTGCTATACTGATCATTT+TGG | - | chr1_3:67606865-67606884 | None:intergenic | 35.0% |
| GATTGGGCTGATATAAACTT+TGG | + | chr1_3:67607042-67607061 | Msa0135840:CDS | 35.0% | |
| GATTTAAAGAACTACCTCTC+TGG | + | chr1_3:67607126-67607145 | Msa0135840:CDS | 35.0% | |
| TCTGGAAAATCAACCAAGTA+AGG | + | chr1_3:67607144-67607163 | Msa0135840:intron | 35.0% | |
| ! | CATCTTTTCAAAGGACCAAA+AGG | - | chr1_3:67607221-67607240 | None:intergenic | 35.0% |
| ! | ACACATCAGCATCTTTTCAA+AGG | - | chr1_3:67607230-67607249 | None:intergenic | 35.0% |
| CTTAGAATCCATTCATAACC+TGG | + | chr1_3:67607341-67607360 | Msa0135840:CDS | 35.0% | |
| TATTTCCTCCAGGTTATGAA+TGG | - | chr1_3:67607352-67607371 | None:intergenic | 35.0% | |
| GAAATAGTGAAAGCTTCTGA+CGG | + | chr1_3:67607366-67607385 | Msa0135840:CDS | 35.0% | |
| ATTATATCCTCCTGAACTGT+AGG | - | chr1_3:67607444-67607463 | None:intergenic | 35.0% | |
| CTCTATGTTTATGATCATCG+TGG | - | chr1_3:67607577-67607596 | None:intergenic | 35.0% | |
| TAGAATGGAATCATGGAGTA+GGG | + | chr1_3:67607813-67607832 | Msa0135840:CDS | 35.0% | |
| CTTCTCAATCACCATAAACT+TGG | + | chr1_3:67607853-67607872 | Msa0135840:CDS | 35.0% | |
| TGCACTAATATAGTTACAGG+TGG | - | chr1_3:67607955-67607974 | None:intergenic | 35.0% | |
| !! | AGTTTCACTTTTGGGGAATT+TGG | + | chr1_3:67607980-67607999 | Msa0135840:intron | 35.0% |
| ! | TTACACAAGAGACTGTTTTC+AGG | - | chr1_3:67608355-67608374 | None:intergenic | 35.0% |
| ACAGTCTCTTGTGTAAAACA+TGG | + | chr1_3:67608359-67608378 | Msa0135840:intron | 35.0% | |
| CTCTTGTGTAAAACATGGTA+AGG | + | chr1_3:67608364-67608383 | Msa0135840:intron | 35.0% | |
| ATGCAGATTTCATAGCAACA+AGG | - | chr1_3:67608657-67608676 | None:intergenic | 35.0% | |
| TTACACAAAGCATGGATACA+TGG | + | chr1_3:67608750-67608769 | Msa0135840:CDS | 35.0% | |
| !! | AATGGCTCTGAATTTGCAAT+GGG | + | chr1_3:67608840-67608859 | Msa0135840:CDS | 35.0% |
| ! | TGGTCTTAACCTGAATTGAT+TGG | - | chr1_3:67609020-67609039 | None:intergenic | 35.0% |
| ! | AGACCATTATCTAGAATGCA+TGG | + | chr1_3:67609034-67609053 | Msa0135840:exon | 35.0% |
| !! | TATTTTGTTTGGTTGGAGGT+AGG | + | chr1_3:67609088-67609107 | Msa0135840:three_prime_UTR | 35.0% |
| !!! | GATAGATTTTGGGGTTTGGA+GGG | - | chr1_3:67604873-67604892 | None:intergenic | 40.0% |
| !!! | AGATAGATTTTGGGGTTTGG+AGG | - | chr1_3:67604874-67604893 | None:intergenic | 40.0% |
| GTGAGGCAATCTAGTATATC+TGG | + | chr1_3:67605024-67605043 | Msa0135840:CDS | 40.0% | |
| AAGAAGCAATGTTGCATTGG+AGG | + | chr1_3:67605164-67605183 | Msa0135840:CDS | 40.0% | |
| AGAAGCAATGTTGCATTGGA+GGG | + | chr1_3:67605165-67605184 | Msa0135840:CDS | 40.0% | |
| GGTTTGGATATGGTTTCAGA+AGG | + | chr1_3:67605195-67605214 | Msa0135840:CDS | 40.0% | |
| ACAAAGCTTGTGTGTACTGT+TGG | + | chr1_3:67605255-67605274 | Msa0135840:CDS | 40.0% | |
| ATTGGAGGATCTAGAGAAGT+TGG | + | chr1_3:67605293-67605312 | Msa0135840:CDS | 40.0% | |
| GATCTAGAGAAGTTGGCATT+GGG | + | chr1_3:67605300-67605319 | Msa0135840:CDS | 40.0% | |
| TGTGTCATGGTACTAGAGAA+TGG | + | chr1_3:67605349-67605368 | Msa0135840:CDS | 40.0% | |
| AAGCTGCAAATTAATCTCCC+AGG | + | chr1_3:67605742-67605761 | Msa0135840:intron | 40.0% | |
| AGCTGCAAATTAATCTCCCA+GGG | + | chr1_3:67605743-67605762 | Msa0135840:intron | 40.0% | |
| GCCATAGCAAAGCTCTATAT+GGG | - | chr1_3:67605867-67605886 | None:intergenic | 40.0% | |
| AGCCATAGCAAAGCTCTATA+TGG | - | chr1_3:67605868-67605887 | None:intergenic | 40.0% | |
| ! | AGGGCCTAATAGTTTGTGAT+AGG | + | chr1_3:67606022-67606041 | Msa0135840:intron | 40.0% |
| CCAGCCTATCACAAACTATT+AGG | - | chr1_3:67606029-67606048 | None:intergenic | 40.0% | |
| ! | CCTAATAGTTTGTGATAGGC+TGG | + | chr1_3:67606026-67606045 | Msa0135840:intron | 40.0% |
| ACAGTTCAAGCAAACTATCC+AGG | + | chr1_3:67606154-67606173 | Msa0135840:CDS | 40.0% | |
| ! | AACTATCCAGGTTTTTCTGC+AGG | + | chr1_3:67606166-67606185 | Msa0135840:CDS | 40.0% |
| TTACTACCTGCAGAAAAACC+TGG | - | chr1_3:67606175-67606194 | None:intergenic | 40.0% | |
| !! | CAGAAACTACATTTGGCTCT+GGG | - | chr1_3:67606417-67606436 | None:intergenic | 40.0% |
| ! | GCAGGACAAATTTTTCATCC+GGG | + | chr1_3:67606545-67606564 | Msa0135840:intron | 40.0% |
| TTTATATCAGCCCAATCCTG+TGG | - | chr1_3:67607039-67607058 | None:intergenic | 40.0% | |
| AGCATGGTTGACAAAGGATA+GGG | - | chr1_3:67607094-67607113 | None:intergenic | 40.0% | |
| AATCCTTAACAGAGTCAGCA+TGG | - | chr1_3:67607110-67607129 | None:intergenic | 40.0% | |
| !! | ACTTGGTTGATTTTCCAGAG+AGG | - | chr1_3:67607143-67607162 | None:intergenic | 40.0% |
| TGAGTCTATGCTTCCTTACT+TGG | - | chr1_3:67607160-67607179 | None:intergenic | 40.0% | |
| AGAATCCATTCATAACCTGG+AGG | + | chr1_3:67607344-67607363 | Msa0135840:CDS | 40.0% | |
| AAGCTTTCACTATTTCCTCC+AGG | - | chr1_3:67607362-67607381 | None:intergenic | 40.0% | |
| ! | ACTGTAGGAATTTGCTCAAG+TGG | - | chr1_3:67607429-67607448 | None:intergenic | 40.0% |
| TGAGCAAATTCCTACAGTTC+AGG | + | chr1_3:67607431-67607450 | Msa0135840:CDS | 40.0% | |
| !! | GAGTCAGCTATTGGTTCATT+TGG | + | chr1_3:67607754-67607773 | Msa0135840:CDS | 40.0% |
| ! | TTCATTTGGACAGAAAGCAC+TGG | + | chr1_3:67607768-67607787 | Msa0135840:CDS | 40.0% |
| GGATATGACTAGCAGTAGAA+TGG | + | chr1_3:67607798-67607817 | Msa0135840:CDS | 40.0% | |
| CTAGCAGTAGAATGGAATCA+TGG | + | chr1_3:67607806-67607825 | Msa0135840:CDS | 40.0% | |
| GTAGAATGGAATCATGGAGT+AGG | + | chr1_3:67607812-67607831 | Msa0135840:CDS | 40.0% | |
| GCAATGATGCTCCAAGTTTA+TGG | - | chr1_3:67607867-67607886 | None:intergenic | 40.0% | |
| ATTTGCTCAGTGATGCAATC+TGG | - | chr1_3:67607889-67607908 | None:intergenic | 40.0% | |
| ! | ATGCAACTGTGCTGTTGAAA+TGG | + | chr1_3:67607909-67607928 | Msa0135840:CDS | 40.0% |
| ! | TGCAACTGTGCTGTTGAAAT+GGG | + | chr1_3:67607910-67607929 | Msa0135840:CDS | 40.0% |
| TATAGTTACAGGTGGCAAGA+AGG | - | chr1_3:67607947-67607966 | None:intergenic | 40.0% | |
| ATAATCGGACAGTCTAGATG+TGG | - | chr1_3:67608035-67608054 | None:intergenic | 40.0% | |
| TGTAATTGGAAGTCCAGATG+TGG | + | chr1_3:67608122-67608141 | Msa0135840:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr1_3:67608315-67608334 | Msa0135840:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_3:67608390-67608409 | Msa0135840:intron | 40.0% | |
| TCGTCAGTGAAAGCAAAGAT+GGG | - | chr1_3:67608808-67608827 | None:intergenic | 40.0% | |
| ATCGTCAGTGAAAGCAAAGA+TGG | - | chr1_3:67608809-67608828 | None:intergenic | 40.0% | |
| !! | TGACGATGAAAGTACTCGAA+TGG | + | chr1_3:67608822-67608841 | Msa0135840:CDS | 40.0% |
| !! | GAATGGCTCTGAATTTGCAA+TGG | + | chr1_3:67608839-67608858 | Msa0135840:CDS | 40.0% |
| !! | ATGGCTCTGAATTTGCAATG+GGG | + | chr1_3:67608841-67608860 | Msa0135840:CDS | 40.0% |
| CAAAGGAGATGTTGTTCTAG+TGG | + | chr1_3:67608954-67608973 | Msa0135840:CDS | 40.0% | |
| TGAATTGATTGGAGAGCCAT+TGG | - | chr1_3:67609009-67609028 | None:intergenic | 40.0% | |
| AATGGCTCTCCAATCAATTC+AGG | + | chr1_3:67609008-67609027 | Msa0135840:CDS | 40.0% | |
| CAGCCATGCATTCTAGATAA+TGG | - | chr1_3:67609040-67609059 | None:intergenic | 40.0% | |
| TTTGGTCGCACAACAAACTG+GGG | - | chr1_3:67604813-67604832 | None:intergenic | 45.0% | |
| CTTTGGTCGCACAACAAACT+GGG | - | chr1_3:67604814-67604833 | None:intergenic | 45.0% | |
| ACTTTGGTCGCACAACAAAC+TGG | - | chr1_3:67604815-67604834 | None:intergenic | 45.0% | |
| TCCCAGCAAAAACCTCAACA+TGG | + | chr1_3:67604963-67604982 | Msa0135840:exon | 45.0% | |
| ! | GCCATGTTGAGGTTTTTGCT+GGG | - | chr1_3:67604967-67604986 | None:intergenic | 45.0% |
| CAAAAACCTCAACATGGCCA+TGG | + | chr1_3:67604969-67604988 | Msa0135840:exon | 45.0% | |
| TCAAAACCATGGCCATGTTG+AGG | - | chr1_3:67604978-67604997 | None:intergenic | 45.0% | |
| GGGAAAACAACATGTGGTCA+AGG | + | chr1_3:67605095-67605114 | Msa0135840:CDS | 45.0% | |
| GTTAGAGCAACAGTGGAAGT+GGG | + | chr1_3:67605117-67605136 | Msa0135840:CDS | 45.0% | |
| TGTTGCATTGGAGGGAAGTT+TGG | + | chr1_3:67605173-67605192 | Msa0135840:CDS | 45.0% | |
| GTTGCATTGGAGGGAAGTTT+GGG | + | chr1_3:67605174-67605193 | Msa0135840:CDS | 45.0% | |
| ! | ATTGGAGGGAAGTTTGGGTT+TGG | + | chr1_3:67605179-67605198 | Msa0135840:CDS | 45.0% |
| ! | GGGAAGTTTGGGTTTGGATA+TGG | + | chr1_3:67605185-67605204 | Msa0135840:CDS | 45.0% |
| !!! | TGAAGGGTTTTAGAGGGTTG+AGG | + | chr1_3:67605229-67605248 | Msa0135840:CDS | 45.0% |
| TGGTCCTGCTTGTAGTTCAT+TGG | + | chr1_3:67605275-67605294 | Msa0135840:CDS | 45.0% | |
| TCCTGCTTGTAGTTCATTGG+AGG | + | chr1_3:67605278-67605297 | Msa0135840:CDS | 45.0% | |
| TCCTCCAATGAACTACAAGC+AGG | - | chr1_3:67605282-67605301 | None:intergenic | 45.0% | |
| GGATCTAGAGAAGTTGGCAT+TGG | + | chr1_3:67605299-67605318 | Msa0135840:CDS | 45.0% | |
| TGGGAGGAATGAATGTTGCT+AGG | + | chr1_3:67605319-67605338 | Msa0135840:CDS | 45.0% | |
| GCTAGGCTTAACATGTGTCA+TGG | + | chr1_3:67605336-67605355 | Msa0135840:CDS | 45.0% | |
| ACCTTCCTCGGTTAAAGTTG+AGG | + | chr1_3:67605482-67605501 | Msa0135840:CDS | 45.0% | |
| ACCTCAACTTTAACCGAGGA+AGG | - | chr1_3:67605486-67605505 | None:intergenic | 45.0% | |
| TAATCTCCCAGGGATTGACT+TGG | + | chr1_3:67605753-67605772 | Msa0135840:intron | 45.0% | |
| TAGCAAAGCTCTATATGGGC+TGG | - | chr1_3:67605863-67605882 | None:intergenic | 45.0% | |
| GCCCATATAGAGCTTTGCTA+TGG | + | chr1_3:67605863-67605882 | Msa0135840:intron | 45.0% | |
| AGAGACCAATACCACCACTA+GGG | - | chr1_3:67605929-67605948 | None:intergenic | 45.0% | |
| !! | TAGTGGTGGTATTGGTCTCT+CGG | + | chr1_3:67605929-67605948 | Msa0135840:intron | 45.0% |
| !! | TATTGGTCTCTCGGATTAGC+CGG | + | chr1_3:67605938-67605957 | Msa0135840:intron | 45.0% |
| CGTTGTAAGTGCATAGATGC+TGG | + | chr1_3:67606381-67606400 | Msa0135840:CDS | 45.0% | |
| ! | CCAGAAACTACATTTGGCTC+TGG | - | chr1_3:67606418-67606437 | None:intergenic | 45.0% |
| CCAGAGCCAAATGTAGTTTC+TGG | + | chr1_3:67606415-67606434 | Msa0135840:CDS | 45.0% | |
| CAGCATGGTTGACAAAGGAT+AGG | - | chr1_3:67607095-67607114 | None:intergenic | 45.0% | |
| AGAGTCAGCATGGTTGACAA+AGG | - | chr1_3:67607100-67607119 | None:intergenic | 45.0% | |
| !! | CAACCATGCTGACTCTGTTA+AGG | + | chr1_3:67607104-67607123 | Msa0135840:CDS | 45.0% |
| GAAAGCTTCTGACGGAATCA+TGG | + | chr1_3:67607374-67607393 | Msa0135840:CDS | 45.0% | |
| CAAGTGGTATTTCGACTCCA+AGG | - | chr1_3:67607413-67607432 | None:intergenic | 45.0% | |
| GCAAATTCCTACAGTTCAGG+AGG | + | chr1_3:67607434-67607453 | Msa0135840:CDS | 45.0% | |
| AGCTGAGAAGCTACAATCAC+TGG | - | chr1_3:67607492-67607511 | None:intergenic | 45.0% | |
| TTGTCTGGTGAGTCAGCTAT+TGG | + | chr1_3:67607745-67607764 | Msa0135840:CDS | 45.0% | |
| AATGGAATCATGGAGTAGGG+AGG | + | chr1_3:67607816-67607835 | Msa0135840:CDS | 45.0% | |
| TGGGGAATTTGGATTGTGTG+CGG | + | chr1_3:67607991-67608010 | Msa0135840:intron | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr1_3:67608321-67608340 | Msa0135840:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr1_3:67608322-67608341 | Msa0135840:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_3:67608386-67608405 | Msa0135840:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_3:67608389-67608408 | Msa0135840:intron | 45.0% | |
| AAAGCAAAGATGGGAGGATC+TGG | - | chr1_3:67608799-67608818 | None:intergenic | 45.0% | |
| TCAGTGAAAGCAAAGATGGG+AGG | - | chr1_3:67608805-67608824 | None:intergenic | 45.0% | |
| TCCAACACGTTCAACTCCAA+TGG | + | chr1_3:67608990-67609009 | Msa0135840:CDS | 45.0% | |
| ! | GGCCATGTTGAGGTTTTTGC+TGG | - | chr1_3:67604968-67604987 | None:intergenic | 50.0% |
| TTGCCTCACAAGGCTTGAAG+CGG | - | chr1_3:67605013-67605032 | None:intergenic | 50.0% | |
| GGTCAAGGTTAGAGCAACAG+TGG | + | chr1_3:67605110-67605129 | Msa0135840:CDS | 50.0% | |
| GGTTAGAGCAACAGTGGAAG+TGG | + | chr1_3:67605116-67605135 | Msa0135840:CDS | 50.0% | |
| ! | CTAGAGAAGTTGGCATTGGG+AGG | + | chr1_3:67605303-67605322 | Msa0135840:CDS | 50.0% |
| ! | TGATCATGGAGCACCTTCCT+CGG | + | chr1_3:67605470-67605489 | Msa0135840:CDS | 50.0% |
| AGCATATGTTAGGGCCTCTC+TGG | + | chr1_3:67605525-67605544 | Msa0135840:intron | 50.0% | |
| TCACCACCAAGTCAATCCCT+GGG | - | chr1_3:67605762-67605781 | None:intergenic | 50.0% | |
| TTCACCACCAAGTCAATCCC+TGG | - | chr1_3:67605763-67605782 | None:intergenic | 50.0% | |
| GTGGTGAAAGCTTGTGACCT+AGG | + | chr1_3:67605775-67605794 | Msa0135840:intron | 50.0% | |
| TTCCATCCTCAGTCCTAGAG+AGG | - | chr1_3:67605809-67605828 | None:intergenic | 50.0% | |
| CTGAGGATGGAATCCTCCAT+TGG | + | chr1_3:67605817-67605836 | Msa0135840:intron | 50.0% | |
| ACACAGGAATCGTTGGCCAA+TGG | - | chr1_3:67605836-67605855 | None:intergenic | 50.0% | |
| TGGCCAACGATTCCTGTGTT+AGG | + | chr1_3:67605837-67605856 | Msa0135840:intron | 50.0% | |
| TGGCCTAACACAGGAATCGT+TGG | - | chr1_3:67605843-67605862 | None:intergenic | 50.0% | |
| !! | TATATGGGCTGGCCTAACAC+AGG | - | chr1_3:67605852-67605871 | None:intergenic | 50.0% |
| ACCAATACCACCACTAGGGT+GGG | - | chr1_3:67605925-67605944 | None:intergenic | 50.0% | |
| GAGAGACCAATACCACCACT+AGG | - | chr1_3:67605930-67605949 | None:intergenic | 50.0% | |
| !! | TCTCGGATTAGCCGGTCATT+GGG | + | chr1_3:67605946-67605965 | Msa0135840:intron | 50.0% |
| GGAGAGATGGAAAGCTTGTC+AGG | + | chr1_3:67606436-67606455 | Msa0135840:CDS | 50.0% | |
| GAGATGGAAAGCTTGTCAGG+AGG | + | chr1_3:67606439-67606458 | Msa0135840:CDS | 50.0% | |
| GCTCCCCACTCTATCAACAA+AGG | + | chr1_3:67606470-67606489 | Msa0135840:CDS | 50.0% | |
| ! | GATTTTACCTCGGCACGAGT+TGG | - | chr1_3:67607543-67607562 | None:intergenic | 50.0% |
| TGAAGCAGTTCGACAGTACG+CGG | + | chr1_3:67607711-67607730 | Msa0135840:CDS | 50.0% | |
| GCGGATGCTTTGATGTTGTC+TGG | + | chr1_3:67607730-67607749 | Msa0135840:CDS | 50.0% | |
| !! | ACAGAAAGCACTGGCAGTGT+TGG | + | chr1_3:67607777-67607796 | Msa0135840:CDS | 50.0% |
| ATTGGAAGTCCAGATGTGGC+TGG | + | chr1_3:67608126-67608145 | Msa0135840:intron | 50.0% | |
| GAAGCAAAGAGCGGTAACCT+TGG | + | chr1_3:67608279-67608298 | Msa0135840:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1_3:67608299-67608318 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | - | chr1_3:67608429-67608448 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | - | chr1_3:67608430-67608449 | None:intergenic | 50.0% | |
| !! | CAAGTTTGTTGGCTGCAGAC+AGG | - | chr1_3:67608711-67608730 | None:intergenic | 50.0% |
| CTGTCTGCAGCCAACAAACT+TGG | + | chr1_3:67608709-67608728 | Msa0135840:intron | 50.0% | |
| ! | TGCAGCCAACAAACTTGGTG+TGG | + | chr1_3:67608714-67608733 | Msa0135840:intron | 50.0% |
| GGCATCCACACCAAGTTTGT+TGG | - | chr1_3:67608722-67608741 | None:intergenic | 50.0% | |
| GCCATTGGAGTTGAACGTGT+TGG | - | chr1_3:67608994-67609013 | None:intergenic | 50.0% | |
| AGAGCAACAGTGGAAGTGGG+TGG | + | chr1_3:67605120-67605139 | Msa0135840:CDS | 55.0% | |
| AACAGTGGAAGTGGGTGGTG+TGG | + | chr1_3:67605125-67605144 | Msa0135840:CDS | 55.0% | |
| !! | TCTCCCAGGGATTGACTTGG+TGG | + | chr1_3:67605756-67605775 | Msa0135840:intron | 55.0% |
| ! | CTAGAGAGGAGCACACTCCT+AGG | - | chr1_3:67605795-67605814 | None:intergenic | 55.0% |
| ! | CTAGGAGTGTGCTCCTCTCT+AGG | + | chr1_3:67605793-67605812 | Msa0135840:intron | 55.0% |
| !! | TGTGCTCCTCTCTAGGACTG+AGG | + | chr1_3:67605800-67605819 | Msa0135840:intron | 55.0% |
| !! | CTCCTCTCTAGGACTGAGGA+TGG | + | chr1_3:67605804-67605823 | Msa0135840:intron | 55.0% |
| CAGGAATCGTTGGCCAATGG+AGG | - | chr1_3:67605833-67605852 | None:intergenic | 55.0% | |
| CAATACCACCACTAGGGTGG+GGG | - | chr1_3:67605923-67605942 | None:intergenic | 55.0% | |
| CCAATACCACCACTAGGGTG+GGG | - | chr1_3:67605924-67605943 | None:intergenic | 55.0% | |
| GACCAATACCACCACTAGGG+TGG | - | chr1_3:67605926-67605945 | None:intergenic | 55.0% | |
| !! | CTCTCGGATTAGCCGGTCAT+TGG | + | chr1_3:67605945-67605964 | Msa0135840:intron | 55.0% |
| !! | GGATTAGCCGGTCATTGGGT+GGG | + | chr1_3:67605950-67605969 | Msa0135840:intron | 55.0% |
| TCGGTATCCCACCCAATGAC+CGG | - | chr1_3:67605960-67605979 | None:intergenic | 55.0% | |
| GACGGAATCATGGTAGCTCG+AGG | + | chr1_3:67607384-67607403 | Msa0135840:CDS | 55.0% | |
| ATGGTAGCTCGAGGTGACCT+TGG | + | chr1_3:67607393-67607412 | Msa0135840:CDS | 55.0% | |
| GTGTGCGGTGTGACTACATG+TGG | + | chr1_3:67608006-67608025 | Msa0135840:intron | 55.0% | |
| TGTGTGCAGTCATGGGGTTG+TGG | + | chr1_3:67608150-67608169 | Msa0135840:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1_3:67608434-67608453 | Msa0135840:intron | 55.0% |
| TGGCTGCAGACAGGCACAAA+AGG | - | chr1_3:67608702-67608721 | None:intergenic | 55.0% | |
| GGTCGCACAACAAACTGGGG+AGG | - | chr1_3:67604810-67604829 | None:intergenic | 60.0% | |
| ! | TGGCCGCTTCAAGCCTTGTG+AGG | + | chr1_3:67605007-67605026 | Msa0135840:CDS | 60.0% |
| AGTGGAAGTGGGTGGTGTGG+AGG | + | chr1_3:67605128-67605147 | Msa0135840:CDS | 60.0% | |
| CCCCACCCTAGTGGTGGTAT+TGG | + | chr1_3:67605921-67605940 | Msa0135840:intron | 60.0% | |
| !! | CGGATTAGCCGGTCATTGGG+TGG | + | chr1_3:67605949-67605968 | Msa0135840:intron | 60.0% |
| TCCAACACCAACTCGTGCCG+AGG | + | chr1_3:67607533-67607552 | Msa0135840:CDS | 60.0% | |
| !! | ACCTCGGCACGAGTTGGTGT+TGG | - | chr1_3:67607537-67607556 | None:intergenic | 60.0% |
| TGCACACAGCCAGCCACATC+TGG | - | chr1_3:67608138-67608157 | None:intergenic | 60.0% | |
| ! | TGGCTGGCTGTGTGCAGTCA+TGG | + | chr1_3:67608142-67608161 | Msa0135840:intron | 60.0% |
| ! | GGCTGGCTGTGTGCAGTCAT+GGG | + | chr1_3:67608143-67608162 | Msa0135840:intron | 60.0% |
| GCTGGCTGTGTGCAGTCATG+GGG | + | chr1_3:67608144-67608163 | Msa0135840:intron | 60.0% | |
| AGCGGTAACCTTGGCGCAAC+TGG | + | chr1_3:67608288-67608307 | Msa0135840:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_3:67608402-67608421 | Msa0135840:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr1_3:67608417-67608436 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr1_3:67608418-67608437 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr1_3:67608417-67608436 | Msa0135840:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr1_3:67608418-67608437 | Msa0135840:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1_3:67608435-67608454 | Msa0135840:intron | 60.0% |
| ACCACCACTAGGGTGGGGGT+GGG | - | chr1_3:67605919-67605938 | None:intergenic | 65.0% | |
| TACCACCACTAGGGTGGGGG+TGG | - | chr1_3:67605920-67605939 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_3:67608404-67608423 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr1_3:67608419-67608438 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr1_3:67608423-67608442 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr1_3:67608424-67608443 | None:intergenic | 65.0% | |
| ! | TGGGGGTGTGTGTGGGGGAG+GGG | - | chr1_3:67605900-67605919 | None:intergenic | 70.0% |
| ! | GTGGGGGTGTGTGTGGGGGA+GGG | - | chr1_3:67605901-67605920 | None:intergenic | 70.0% |
| ! | TGGGGGTGGGGGTGTGTGTG+GGG | - | chr1_3:67605906-67605925 | None:intergenic | 70.0% |
| ! | GTGGGGGTGGGGGTGTGTGT+GGG | - | chr1_3:67605907-67605926 | None:intergenic | 70.0% |
| CACCACTAGGGTGGGGGTGG+GGG | - | chr1_3:67605917-67605936 | None:intergenic | 70.0% | |
| CCACCACTAGGGTGGGGGTG+GGG | - | chr1_3:67605918-67605937 | None:intergenic | 70.0% | |
| GGGGTGTGTGTGGGGGAGGG+GGG | - | chr1_3:67605898-67605917 | None:intergenic | 75.0% | |
| ! | GGGGGTGTGTGTGGGGGAGG+GGG | - | chr1_3:67605899-67605918 | None:intergenic | 75.0% |
| ! | GGTGGGGGTGTGTGTGGGGG+AGG | - | chr1_3:67605902-67605921 | None:intergenic | 75.0% |
| ! | GGGGGTGGGGGTGTGTGTGG+GGG | - | chr1_3:67605905-67605924 | None:intergenic | 75.0% |
| ! | GGTGGGGGTGGGGGTGTGTG+TGG | - | chr1_3:67605908-67605927 | None:intergenic | 75.0% |
| CACCCCCACCCCCACCCTAG+TGG | + | chr1_3:67605912-67605931 | Msa0135840:intron | 75.0% | |
| CCCCACCCCCACCCTAGTGG+TGG | + | chr1_3:67605915-67605934 | Msa0135840:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67604786 | 67609238 | 67604786 | ID=Msa0135840;Name=Msa0135840 |
| chr1_3 | mRNA | 67604786 | 67609238 | 67604786 | ID=Msa0135840-mRNA-1;Parent=Msa0135840;Name=Msa0135840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=196|0.83|0.85|1|1|1|7|191|589 |
| chr1_3 | exon | 67604786 | 67605503 | 67604786 | ID=Msa0135840-mRNA-1:exon:23196;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67606100 | 67606187 | 67606100 | ID=Msa0135840-mRNA-1:exon:23197;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67606301 | 67606491 | 67606301 | ID=Msa0135840-mRNA-1:exon:23198;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67607042 | 67607160 | 67607042 | ID=Msa0135840-mRNA-1:exon:23199;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67607311 | 67607554 | 67607311 | ID=Msa0135840-mRNA-1:exon:23200;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67607655 | 67607931 | 67607655 | ID=Msa0135840-mRNA-1:exon:23201;Parent=Msa0135840-mRNA-1 |
| chr1_3 | exon | 67608719 | 67609238 | 67608719 | ID=Msa0135840-mRNA-1:exon:23202;Parent=Msa0135840-mRNA-1 |
| chr1_3 | five_prime_UTR | 67604786 | 67604981 | 67604786 | ID=Msa0135840-mRNA-1:five_prime_utr;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67604982 | 67605503 | 67604982 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67606100 | 67606187 | 67606100 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67606301 | 67606491 | 67606301 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67607042 | 67607160 | 67607042 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67607311 | 67607554 | 67607311 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67607655 | 67607931 | 67607655 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | CDS | 67608719 | 67609047 | 67608719 | ID=Msa0135840-mRNA-1:cds;Parent=Msa0135840-mRNA-1 |
| chr1_3 | three_prime_UTR | 67609048 | 67609238 | 67609048 | ID=Msa0135840-mRNA-1:three_prime_utr;Parent=Msa0135840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
