AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138910 MtrunA17_Chr4g0067831 90.612 245 23 0 1 245 1 245 2.83e-161 446
Msa0138910 MtrunA17_Chr3g0115421 37.288 59 37 0 7 65 28 86 5.21e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138910 AT1G29100.2 29.213 89 63 0 6 94 4 92 2.96e-11 60.5
Msa0138910 AT1G29100.1 29.070 86 61 0 9 94 1 86 8.65e-11 58.9

Find 65 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGTATCATTCAAAATTT+AGG 0.207400 1_3:+72120268 Msa0138910:three_prime_UTR
CGACAAAGGCTAACAGTTAT+TGG 0.306127 1_3:+72119568 Msa0138910:CDS
TTCAATATTGGAACAAATAA+TGG 0.318901 1_3:-72119650 None:intergenic
TATGGTATAATCTGTTTCTA+TGG 0.323340 1_3:-72119930 None:intergenic
TGAAGTTGTAGGTTCAATAT+TGG 0.323646 1_3:-72119662 None:intergenic
CATGTTAACAGAATTGGTTC+TGG 0.333825 1_3:+72119892 Msa0138910:CDS
CCTAACCATGTTAACAGAAT+TGG 0.338122 1_3:+72119886 Msa0138910:CDS
GTCTCTCTCCTCTATGTCTA+AGG 0.364022 1_3:-72120193 None:intergenic
AGTTAATAAGCACAGAAGAT+AGG 0.365330 1_3:-72120353 None:intergenic
GTAGAAATACAGGGTCATTA+TGG 0.366375 1_3:-72119948 None:intergenic
ATGTCACAGAATCATGATAT+TGG 0.385727 1_3:-72120248 None:intergenic
GAATCTTTAGATGAAGTTGT+AGG 0.385930 1_3:-72119673 None:intergenic
GATGGCTCTTGTAGAAATAC+AGG 0.396677 1_3:-72119958 None:intergenic
CTCGAGGTGTCTGCATTTGA+TGG 0.408504 1_3:-72119354 None:intergenic
CATGTAGGTGTTGGTGATGA+TGG 0.418378 1_3:-72119784 None:intergenic
GTTGCCTCAACCATTGGTTC+TGG 0.423380 1_3:-72119760 None:intergenic
AGTTTGCAATAGAAGTAAGA+AGG 0.451270 1_3:+72120312 Msa0138910:three_prime_UTR
CAGCAGTGGCAGAACAATCT+AGG 0.455141 1_3:+72119820 Msa0138910:CDS
CCAATTCTGTTAACATGGTT+AGG 0.456310 1_3:-72119886 None:intergenic
TATGTATGACATTCAATGGT+TGG 0.458995 1_3:-72119987 None:intergenic
AAAGCACTCAATGGCATCAA+TGG 0.463601 1_3:+72119430 Msa0138910:CDS
ATGGATCAGCCACTCTTACA+TGG 0.465348 1_3:-72119335 None:intergenic
AAGGAGGTTCCTTGAGCTTG+TGG 0.468534 1_3:-72119736 None:intergenic
GTTAATAAGCACAGAAGATA+GGG 0.468859 1_3:-72120352 None:intergenic
GTTTGCAATAGAAGTAAGAA+GGG 0.471127 1_3:+72120313 Msa0138910:three_prime_UTR
TAAGGCACTATACTAGACTA+TGG 0.479471 1_3:-72120175 None:intergenic
TGTCAAAGCAATTAAGAAGA+AGG 0.487879 1_3:+72119612 Msa0138910:CDS
ATGTTAACAGAATTGGTTCT+GGG 0.488978 1_3:+72119893 Msa0138910:CDS
CTAGACTATGGTACATGCAT+TGG 0.493223 1_3:-72120163 None:intergenic
CAGAACCAATTCTGTTAACA+TGG 0.495361 1_3:-72119891 None:intergenic
CGCAAAACAGAAACATGCTC+AGG 0.497022 1_3:+72120445 Msa0138910:three_prime_UTR
GATGGTGTTGCCTCAACCAT+TGG 0.497219 1_3:-72119766 None:intergenic
TAACTATGTATGACATTCAA+TGG 0.498996 1_3:-72119991 None:intergenic
TAGACTATGGTACATGCATT+GGG 0.499389 1_3:-72120162 None:intergenic
TGTCTTGCATTGTGCCATGT+AGG 0.515576 1_3:-72119799 None:intergenic
AAAGGCTAACAGTTATTGGA+TGG 0.538223 1_3:+72119572 Msa0138910:CDS
AGACACTACATGAAAAGTAA+AGG 0.538953 1_3:+72120212 Msa0138910:three_prime_UTR
CATCATCACCAACACCTACA+TGG 0.540194 1_3:+72119785 Msa0138910:CDS
TATTCAGTGATATGAGATGA+TGG 0.549737 1_3:-72120027 None:intergenic
AAGATCAAGAAAGCACTCAA+TGG 0.551774 1_3:+72119421 Msa0138910:CDS
CTCAACCATTGGTTCTGGAA+AGG 0.553516 1_3:-72119755 None:intergenic
CTCATATGTTACACCATCAT+CGG 0.560041 1_3:+72119863 Msa0138910:CDS
CTTTCCAGAACCAATGGTTG+AGG 0.566197 1_3:+72119756 Msa0138910:CDS
AACCTCCTTTCCAGAACCAA+TGG 0.569484 1_3:+72119750 Msa0138910:CDS
GTATAGTGCCTTAGACATAG+AGG 0.571229 1_3:+72120185 Msa0138910:exon
CACATCCGTTACAATCAACT+CGG 0.572623 1_3:-72119393 None:intergenic
TTGTAATGTGTGTGCCATGA+TGG 0.573329 1_3:-72120066 None:intergenic
AACCATTGGTTCTGGAAAGG+AGG 0.576590 1_3:-72119752 None:intergenic
TCGTTGACTTCGATCGACAA+AGG 0.580733 1_3:+72119554 Msa0138910:CDS
GCATTGTGCCATGTAGGTGT+TGG 0.586636 1_3:-72119793 None:intergenic
AGGAACTGAAGATGCAGAAG+AGG 0.588018 1_3:+72119840 Msa0138910:CDS
CTTCAAGCTCCACAAGCTCA+AGG 0.591533 1_3:+72119727 Msa0138910:CDS
ACTTGTATCGTTGTGACTCG+AGG 0.595070 1_3:-72119370 None:intergenic
TGGATCAGCCACTCTTACAT+GGG 0.605123 1_3:-72119334 None:intergenic
GGGATTGTCATCGCTGAACA+TGG 0.605508 1_3:-72120142 None:intergenic
TAACATGGTTAGGCCGATGA+TGG 0.610686 1_3:-72119876 None:intergenic
CAAGTCCGAGTTGATTGTAA+CGG 0.616785 1_3:+72119388 Msa0138910:CDS
GCAAGCATCCCATGTAAGAG+TGG 0.623377 1_3:+72119326 Msa0138910:five_prime_UTR
AAGGCTAACAGTTATTGGAT+GGG 0.626092 1_3:+72119573 Msa0138910:CDS
AATATTGGAACAAATAATGG+TGG 0.628109 1_3:-72119647 None:intergenic
AATGTGTTAGATCACCATCA+TGG 0.630608 1_3:+72120052 Msa0138910:CDS
GGCACAATGCAAGACAGCAG+TGG 0.669598 1_3:+72119806 Msa0138910:CDS
ATGGCTCTTGTAGAAATACA+GGG 0.673754 1_3:-72119957 None:intergenic
TGAAATACTTATCAAACACG+AGG 0.689171 1_3:+72120507 Msa0138910:three_prime_UTR
AACTATATAGAACACTACAG+TGG 0.711693 1_3:+72120087 Msa0138910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTGTGTGATTAATTA+TGG + chr1_3:72119281-72119300 Msa0138910:five_prime_UTR 20.0%
!! TTCAATATTGGAACAAATAA+TGG - chr1_3:72119653-72119672 None:intergenic 20.0%
!! CATAGTATCATTCAAAATTT+AGG + chr1_3:72120268-72120287 Msa0138910:three_prime_UTR 20.0%
!!! CTTTTTTGTGTGATTAATTA+TGG + chr1_3:72119281-72119300 Msa0138910:five_prime_UTR 20.0%
!! TTCAATATTGGAACAAATAA+TGG - chr1_3:72119653-72119672 None:intergenic 20.0%
!! CATAGTATCATTCAAAATTT+AGG + chr1_3:72120268-72120287 Msa0138910:three_prime_UTR 20.0%
!! ATTGCTTTGACAATATTTTC+TGG - chr1_3:72119604-72119623 None:intergenic 25.0%
! AATATTGGAACAAATAATGG+TGG - chr1_3:72119650-72119669 None:intergenic 25.0%
!!! TGAAGATTTTCTTTTGGTTT+TGG - chr1_3:72119712-72119731 None:intergenic 25.0%
!!! TATGGTATAATCTGTTTCTA+TGG - chr1_3:72119933-72119952 None:intergenic 25.0%
! TAACTATGTATGACATTCAA+TGG - chr1_3:72119994-72120013 None:intergenic 25.0%
!! ATTGCTTTGACAATATTTTC+TGG - chr1_3:72119604-72119623 None:intergenic 25.0%
! AATATTGGAACAAATAATGG+TGG - chr1_3:72119650-72119669 None:intergenic 25.0%
!!! TGAAGATTTTCTTTTGGTTT+TGG - chr1_3:72119712-72119731 None:intergenic 25.0%
!!! TATGGTATAATCTGTTTCTA+TGG - chr1_3:72119933-72119952 None:intergenic 25.0%
! TAACTATGTATGACATTCAA+TGG - chr1_3:72119994-72120013 None:intergenic 25.0%
CAACAAGTTCACAAAATAGT+TGG - chr1_3:72119511-72119530 None:intergenic 30.0%
TGTCAAAGCAATTAAGAAGA+AGG + chr1_3:72119612-72119631 Msa0138910:CDS 30.0%
TGAAGTTGTAGGTTCAATAT+TGG - chr1_3:72119665-72119684 None:intergenic 30.0%
GAATCTTTAGATGAAGTTGT+AGG - chr1_3:72119676-72119695 None:intergenic 30.0%
!!! TCTTTTGGTTTTGGTTTTGT+TGG - chr1_3:72119703-72119722 None:intergenic 30.0%
! ATGTTAACAGAATTGGTTCT+GGG + chr1_3:72119893-72119912 Msa0138910:CDS 30.0%
! TTCAATGGTTGGATTTTAGA+TGG - chr1_3:72119979-72119998 None:intergenic 30.0%
TATGTATGACATTCAATGGT+TGG - chr1_3:72119990-72120009 None:intergenic 30.0%
TATTCAGTGATATGAGATGA+TGG - chr1_3:72120030-72120049 None:intergenic 30.0%
AACTATATAGAACACTACAG+TGG + chr1_3:72120087-72120106 Msa0138910:CDS 30.0%
AGACACTACATGAAAAGTAA+AGG + chr1_3:72120212-72120231 Msa0138910:three_prime_UTR 30.0%
ATGTCACAGAATCATGATAT+TGG - chr1_3:72120251-72120270 None:intergenic 30.0%
AGTTTGCAATAGAAGTAAGA+AGG + chr1_3:72120312-72120331 Msa0138910:three_prime_UTR 30.0%
GTTTGCAATAGAAGTAAGAA+GGG + chr1_3:72120313-72120332 Msa0138910:three_prime_UTR 30.0%
GTTAATAAGCACAGAAGATA+GGG - chr1_3:72120355-72120374 None:intergenic 30.0%
AGTTAATAAGCACAGAAGAT+AGG - chr1_3:72120356-72120375 None:intergenic 30.0%
CAACAAGTTCACAAAATAGT+TGG - chr1_3:72119511-72119530 None:intergenic 30.0%
TGTCAAAGCAATTAAGAAGA+AGG + chr1_3:72119612-72119631 Msa0138910:CDS 30.0%
TGAAGTTGTAGGTTCAATAT+TGG - chr1_3:72119665-72119684 None:intergenic 30.0%
GAATCTTTAGATGAAGTTGT+AGG - chr1_3:72119676-72119695 None:intergenic 30.0%
!!! TCTTTTGGTTTTGGTTTTGT+TGG - chr1_3:72119703-72119722 None:intergenic 30.0%
! ATGTTAACAGAATTGGTTCT+GGG + chr1_3:72119893-72119912 Msa0138910:CDS 30.0%
! TTCAATGGTTGGATTTTAGA+TGG - chr1_3:72119979-72119998 None:intergenic 30.0%
TATGTATGACATTCAATGGT+TGG - chr1_3:72119990-72120009 None:intergenic 30.0%
TATTCAGTGATATGAGATGA+TGG - chr1_3:72120030-72120049 None:intergenic 30.0%
AACTATATAGAACACTACAG+TGG + chr1_3:72120087-72120106 Msa0138910:CDS 30.0%
AGACACTACATGAAAAGTAA+AGG + chr1_3:72120212-72120231 Msa0138910:three_prime_UTR 30.0%
ATGTCACAGAATCATGATAT+TGG - chr1_3:72120251-72120270 None:intergenic 30.0%
AGTTTGCAATAGAAGTAAGA+AGG + chr1_3:72120312-72120331 Msa0138910:three_prime_UTR 30.0%
GTTTGCAATAGAAGTAAGAA+GGG + chr1_3:72120313-72120332 Msa0138910:three_prime_UTR 30.0%
GTTAATAAGCACAGAAGATA+GGG - chr1_3:72120355-72120374 None:intergenic 30.0%
AGTTAATAAGCACAGAAGAT+AGG - chr1_3:72120356-72120375 None:intergenic 30.0%
!! AAGATCAAGAAAGCACTCAA+TGG + chr1_3:72119421-72119440 Msa0138910:CDS 35.0%
! TTGCTGGTGTGTTATTAAGA+AGG - chr1_3:72119482-72119501 None:intergenic 35.0%
! AAATAGTTGGTTGATGTTGC+TGG - chr1_3:72119498-72119517 None:intergenic 35.0%
!!! TTGTGAACTTGTTGTTTTGC+AGG + chr1_3:72119517-72119536 Msa0138910:intron 35.0%
AAAGGCTAACAGTTATTGGA+TGG + chr1_3:72119572-72119591 Msa0138910:CDS 35.0%
AAGGCTAACAGTTATTGGAT+GGG + chr1_3:72119573-72119592 Msa0138910:CDS 35.0%
! GGAGCTTGAAGATTTTCTTT+TGG - chr1_3:72119718-72119737 None:intergenic 35.0%
CTCATATGTTACACCATCAT+CGG + chr1_3:72119863-72119882 Msa0138910:CDS 35.0%
CCAATTCTGTTAACATGGTT+AGG - chr1_3:72119889-72119908 None:intergenic 35.0%
CCTAACCATGTTAACAGAAT+TGG + chr1_3:72119886-72119905 Msa0138910:CDS 35.0%
CAGAACCAATTCTGTTAACA+TGG - chr1_3:72119894-72119913 None:intergenic 35.0%
! CATGTTAACAGAATTGGTTC+TGG + chr1_3:72119892-72119911 Msa0138910:CDS 35.0%
GTAGAAATACAGGGTCATTA+TGG - chr1_3:72119951-72119970 None:intergenic 35.0%
ATGGCTCTTGTAGAAATACA+GGG - chr1_3:72119960-72119979 None:intergenic 35.0%
AATGTGTTAGATCACCATCA+TGG + chr1_3:72120052-72120071 Msa0138910:CDS 35.0%
TAGACTATGGTACATGCATT+GGG - chr1_3:72120165-72120184 None:intergenic 35.0%
! TAAGGCACTATACTAGACTA+TGG - chr1_3:72120178-72120197 None:intergenic 35.0%
!!! TGCTTTTTTGCTTTGACGAA+AGG - chr1_3:72120393-72120412 None:intergenic 35.0%
! GTTTCTGTTTTGCGAAATTC+AGG - chr1_3:72120439-72120458 None:intergenic 35.0%
!! AAGATCAAGAAAGCACTCAA+TGG + chr1_3:72119421-72119440 Msa0138910:CDS 35.0%
! TTGCTGGTGTGTTATTAAGA+AGG - chr1_3:72119482-72119501 None:intergenic 35.0%
! AAATAGTTGGTTGATGTTGC+TGG - chr1_3:72119498-72119517 None:intergenic 35.0%
!!! TTGTGAACTTGTTGTTTTGC+AGG + chr1_3:72119517-72119536 Msa0138910:intron 35.0%
AAAGGCTAACAGTTATTGGA+TGG + chr1_3:72119572-72119591 Msa0138910:CDS 35.0%
AAGGCTAACAGTTATTGGAT+GGG + chr1_3:72119573-72119592 Msa0138910:CDS 35.0%
! GGAGCTTGAAGATTTTCTTT+TGG - chr1_3:72119718-72119737 None:intergenic 35.0%
CTCATATGTTACACCATCAT+CGG + chr1_3:72119863-72119882 Msa0138910:CDS 35.0%
CCAATTCTGTTAACATGGTT+AGG - chr1_3:72119889-72119908 None:intergenic 35.0%
CCTAACCATGTTAACAGAAT+TGG + chr1_3:72119886-72119905 Msa0138910:CDS 35.0%
CAGAACCAATTCTGTTAACA+TGG - chr1_3:72119894-72119913 None:intergenic 35.0%
! CATGTTAACAGAATTGGTTC+TGG + chr1_3:72119892-72119911 Msa0138910:CDS 35.0%
GTAGAAATACAGGGTCATTA+TGG - chr1_3:72119951-72119970 None:intergenic 35.0%
ATGGCTCTTGTAGAAATACA+GGG - chr1_3:72119960-72119979 None:intergenic 35.0%
AATGTGTTAGATCACCATCA+TGG + chr1_3:72120052-72120071 Msa0138910:CDS 35.0%
TAGACTATGGTACATGCATT+GGG - chr1_3:72120165-72120184 None:intergenic 35.0%
! TAAGGCACTATACTAGACTA+TGG - chr1_3:72120178-72120197 None:intergenic 35.0%
!!! TGCTTTTTTGCTTTGACGAA+AGG - chr1_3:72120393-72120412 None:intergenic 35.0%
! GTTTCTGTTTTGCGAAATTC+AGG - chr1_3:72120439-72120458 None:intergenic 35.0%
!! CAAGTCCGAGTTGATTGTAA+CGG + chr1_3:72119388-72119407 Msa0138910:CDS 40.0%
CACATCCGTTACAATCAACT+CGG - chr1_3:72119396-72119415 None:intergenic 40.0%
! AAAGCACTCAATGGCATCAA+TGG + chr1_3:72119430-72119449 Msa0138910:CDS 40.0%
CGACAAAGGCTAACAGTTAT+TGG + chr1_3:72119568-72119587 Msa0138910:CDS 40.0%
GATGGCTCTTGTAGAAATAC+AGG - chr1_3:72119961-72119980 None:intergenic 40.0%
TTGTAATGTGTGTGCCATGA+TGG - chr1_3:72120069-72120088 None:intergenic 40.0%
CTAGACTATGGTACATGCAT+TGG - chr1_3:72120166-72120185 None:intergenic 40.0%
GTATAGTGCCTTAGACATAG+AGG + chr1_3:72120185-72120204 Msa0138910:exon 40.0%
!! CAAGTCCGAGTTGATTGTAA+CGG + chr1_3:72119388-72119407 Msa0138910:CDS 40.0%
CACATCCGTTACAATCAACT+CGG - chr1_3:72119396-72119415 None:intergenic 40.0%
! AAAGCACTCAATGGCATCAA+TGG + chr1_3:72119430-72119449 Msa0138910:CDS 40.0%
CGACAAAGGCTAACAGTTAT+TGG + chr1_3:72119568-72119587 Msa0138910:CDS 40.0%
GATGGCTCTTGTAGAAATAC+AGG - chr1_3:72119961-72119980 None:intergenic 40.0%
TTGTAATGTGTGTGCCATGA+TGG - chr1_3:72120069-72120088 None:intergenic 40.0%
CTAGACTATGGTACATGCAT+TGG - chr1_3:72120166-72120185 None:intergenic 40.0%
GTATAGTGCCTTAGACATAG+AGG + chr1_3:72120185-72120204 Msa0138910:exon 40.0%
TGGATCAGCCACTCTTACAT+GGG - chr1_3:72119337-72119356 None:intergenic 45.0%
ATGGATCAGCCACTCTTACA+TGG - chr1_3:72119338-72119357 None:intergenic 45.0%
ACTTGTATCGTTGTGACTCG+AGG - chr1_3:72119373-72119392 None:intergenic 45.0%
CACTCAATGGCATCAATGGT+AGG + chr1_3:72119434-72119453 Msa0138910:intron 45.0%
!! TCGTTGACTTCGATCGACAA+AGG + chr1_3:72119554-72119573 Msa0138910:CDS 45.0%
AACCTCCTTTCCAGAACCAA+TGG + chr1_3:72119750-72119769 Msa0138910:CDS 45.0%
!! AACCATTGGTTCTGGAAAGG+AGG - chr1_3:72119755-72119774 None:intergenic 45.0%
!! CTCAACCATTGGTTCTGGAA+AGG - chr1_3:72119758-72119777 None:intergenic 45.0%
CTTTCCAGAACCAATGGTTG+AGG + chr1_3:72119756-72119775 Msa0138910:CDS 45.0%
!! CATGTAGGTGTTGGTGATGA+TGG - chr1_3:72119787-72119806 None:intergenic 45.0%
CATCATCACCAACACCTACA+TGG + chr1_3:72119785-72119804 Msa0138910:CDS 45.0%
TGTCTTGCATTGTGCCATGT+AGG - chr1_3:72119802-72119821 None:intergenic 45.0%
AGGAACTGAAGATGCAGAAG+AGG + chr1_3:72119840-72119859 Msa0138910:CDS 45.0%
TAACATGGTTAGGCCGATGA+TGG - chr1_3:72119879-72119898 None:intergenic 45.0%
GTCTCTCTCCTCTATGTCTA+AGG - chr1_3:72120196-72120215 None:intergenic 45.0%
CGCAAAACAGAAACATGCTC+AGG + chr1_3:72120445-72120464 Msa0138910:three_prime_UTR 45.0%
TGGATCAGCCACTCTTACAT+GGG - chr1_3:72119337-72119356 None:intergenic 45.0%
ATGGATCAGCCACTCTTACA+TGG - chr1_3:72119338-72119357 None:intergenic 45.0%
ACTTGTATCGTTGTGACTCG+AGG - chr1_3:72119373-72119392 None:intergenic 45.0%
CACTCAATGGCATCAATGGT+AGG + chr1_3:72119434-72119453 Msa0138910:intron 45.0%
!! TCGTTGACTTCGATCGACAA+AGG + chr1_3:72119554-72119573 Msa0138910:CDS 45.0%
AACCTCCTTTCCAGAACCAA+TGG + chr1_3:72119750-72119769 Msa0138910:CDS 45.0%
!! AACCATTGGTTCTGGAAAGG+AGG - chr1_3:72119755-72119774 None:intergenic 45.0%
!! CTCAACCATTGGTTCTGGAA+AGG - chr1_3:72119758-72119777 None:intergenic 45.0%
CTTTCCAGAACCAATGGTTG+AGG + chr1_3:72119756-72119775 Msa0138910:CDS 45.0%
!! CATGTAGGTGTTGGTGATGA+TGG - chr1_3:72119787-72119806 None:intergenic 45.0%
CATCATCACCAACACCTACA+TGG + chr1_3:72119785-72119804 Msa0138910:CDS 45.0%
TGTCTTGCATTGTGCCATGT+AGG - chr1_3:72119802-72119821 None:intergenic 45.0%
AGGAACTGAAGATGCAGAAG+AGG + chr1_3:72119840-72119859 Msa0138910:CDS 45.0%
TAACATGGTTAGGCCGATGA+TGG - chr1_3:72119879-72119898 None:intergenic 45.0%
GTCTCTCTCCTCTATGTCTA+AGG - chr1_3:72120196-72120215 None:intergenic 45.0%
CGCAAAACAGAAACATGCTC+AGG + chr1_3:72120445-72120464 Msa0138910:three_prime_UTR 45.0%
GCAAGCATCCCATGTAAGAG+TGG + chr1_3:72119326-72119345 Msa0138910:five_prime_UTR 50.0%
! CTCGAGGTGTCTGCATTTGA+TGG - chr1_3:72119357-72119376 None:intergenic 50.0%
CTTCAAGCTCCACAAGCTCA+AGG + chr1_3:72119727-72119746 Msa0138910:CDS 50.0%
AAGGAGGTTCCTTGAGCTTG+TGG - chr1_3:72119739-72119758 None:intergenic 50.0%
!! GTTGCCTCAACCATTGGTTC+TGG - chr1_3:72119763-72119782 None:intergenic 50.0%
!! GATGGTGTTGCCTCAACCAT+TGG - chr1_3:72119769-72119788 None:intergenic 50.0%
GCATTGTGCCATGTAGGTGT+TGG - chr1_3:72119796-72119815 None:intergenic 50.0%
CAGCAGTGGCAGAACAATCT+AGG + chr1_3:72119820-72119839 Msa0138910:CDS 50.0%
GGGATTGTCATCGCTGAACA+TGG - chr1_3:72120145-72120164 None:intergenic 50.0%
GCAAGCATCCCATGTAAGAG+TGG + chr1_3:72119326-72119345 Msa0138910:five_prime_UTR 50.0%
! CTCGAGGTGTCTGCATTTGA+TGG - chr1_3:72119357-72119376 None:intergenic 50.0%
CTTCAAGCTCCACAAGCTCA+AGG + chr1_3:72119727-72119746 Msa0138910:CDS 50.0%
AAGGAGGTTCCTTGAGCTTG+TGG - chr1_3:72119739-72119758 None:intergenic 50.0%
!! GTTGCCTCAACCATTGGTTC+TGG - chr1_3:72119763-72119782 None:intergenic 50.0%
!! GATGGTGTTGCCTCAACCAT+TGG - chr1_3:72119769-72119788 None:intergenic 50.0%
GCATTGTGCCATGTAGGTGT+TGG - chr1_3:72119796-72119815 None:intergenic 50.0%
CAGCAGTGGCAGAACAATCT+AGG + chr1_3:72119820-72119839 Msa0138910:CDS 50.0%
GGGATTGTCATCGCTGAACA+TGG - chr1_3:72120145-72120164 None:intergenic 50.0%
GGCACAATGCAAGACAGCAG+TGG + chr1_3:72119806-72119825 Msa0138910:CDS 55.0%
GGCACAATGCAAGACAGCAG+TGG + chr1_3:72119806-72119825 Msa0138910:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72119274 72120526 72119274 ID=Msa0138910;Name=Msa0138910
chr1_3 mRNA 72119274 72120526 72119274 ID=Msa0138910-mRNA-1;Parent=Msa0138910;Name=Msa0138910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87|1|1|1|1|1|2|341|245
chr1_3 exon 72119274 72119451 72119274 ID=Msa0138910-mRNA-1:exon:25130;Parent=Msa0138910-mRNA-1
chr1_3 exon 72119539 72120526 72119539 ID=Msa0138910-mRNA-1:exon:25131;Parent=Msa0138910-mRNA-1
chr1_3 five_prime_UTR 72119274 72119360 72119274 ID=Msa0138910-mRNA-1:five_prime_utr;Parent=Msa0138910-mRNA-1
chr1_3 CDS 72119361 72119451 72119361 ID=Msa0138910-mRNA-1:cds;Parent=Msa0138910-mRNA-1
chr1_3 CDS 72119539 72120185 72119539 ID=Msa0138910-mRNA-1:cds;Parent=Msa0138910-mRNA-1
chr1_3 three_prime_UTR 72120186 72120526 72120186 ID=Msa0138910-mRNA-1:three_prime_utr;Parent=Msa0138910-mRNA-1
Gene Sequence

>Msa0138910

ATGCAGACACCTCGAGTCACAACGATACAAGTCCGAGTTGATTGTAACGGATGTGCGCAGAAGATCAAGAAAGCACTCAATGGCATCAATGGTATACATGATCTTCTCGTTGACTTCGATCGACAAAGGCTAACAGTTATTGGATGGGCAGATCCAGAAAATATTGTCAAAGCAATTAAGAAGAAGGCAAAGAAGAATGCCACCATTATTTGTTCCAATATTGAACCTACAACTTCATCTAAAGATTCTAAACCAACAAAACCAAAACCAAAAGAAAATCTTCAAGCTCCACAAGCTCAAGGAACCTCCTTTCCAGAACCAATGGTTGAGGCAACACCATCATCACCAACACCTACATGGCACAATGCAAGACAGCAGTGGCAGAACAATCTAGGAACTGAAGATGCAGAAGAGGCTCATATGTTACACCATCATCGGCCTAACCATGTTAACAGAATTGGTTCTGGGAATAACTATGTTGACCATAGAAACAGATTATACCATAATGACCCTGTATTTCTACAAGAGCCATCTAAAATCCAACCATTGAATGTCATACATAGTTACAATACATACATGCCATCATCTCATATCACTGAATATGAATGTGTTAGATCACCATCATGGCACACACATTACAACTATATAGAACACTACAGTGGAGACTACAATGACAACAATGTAGATATAGCAGCCATGTTCAGCGATGACAATCCCAATGCATGTACCATAGTCTAG
Protein sequence

>Msa0138910

MQTPRVTTIQVRVDCNGCAQKIKKALNGINGIHDLLVDFDRQRLTVIGWADPENIVKAIKKKAKKNATIICSNIEPTTSSKDSKPTKPKPKENLQAPQAQGTSFPEPMVEATPSSPTPTWHNARQQWQNNLGTEDAEEAHMLHHHRPNHVNRIGSGNNYVDHRNRLYHNDPVFLQEPSKIQPLNVIHSYNTYMPSSHITEYECVRSPSWHTHYNYIEHYSGDYNDNNVDIAAMFSDDNPNACTIV*