AlfalfaGEDB | Msa0138910

M. sativa cultivar zhongmu-4 / Msa0138910

KEGG: -
GO: -
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138910	G7JLL0	90.612	245	23	0	1	245	1	245	1.47e-157	446

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138910	Msa0427820	0.845821	3.197299e-59	-8.615850e-47
Msa0138910	Msa0474060	0.846237	2.464360e-59	-8.615850e-47
Msa0138910	Msa0518680	0.827925	1.195098e-54	-8.615850e-47
Msa0138910	Msa0862170	0.809280	2.045914e-50	-8.615850e-47
Msa0138910	Msa1218150	0.984711	2.324263e-161	-8.615850e-47
Msa0138910	Msa1360930	0.814050	1.876586e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138910	MtrunA17_Chr4g0067831	90.612	245	23	0	1	245	1	245	2.83e-161	446
Msa0138910	MtrunA17_Chr3g0115421	37.288	59	37	0	7	65	28	86	5.21e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138910	AT1G29100.2	29.213	89	63	0	6	94	4	92	2.96e-11	60.5
Msa0138910	AT1G29100.1	29.070	86	61	0	9	94	1	86	8.65e-11	58.9

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Find 65 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACTCAATGGCATCAA+TGG	0.463601	1_3:+72119430	Msa0138910:CDS
AAAGGCTAACAGTTATTGGA+TGG	0.538223	1_3:+72119572	Msa0138910:CDS
AACCATTGGTTCTGGAAAGG+AGG	0.576590	1_3:-72119752	None:intergenic
AACCTCCTTTCCAGAACCAA+TGG	0.569484	1_3:+72119750	Msa0138910:CDS
AACTATATAGAACACTACAG+TGG	0.711693	1_3:+72120087	Msa0138910:CDS
AAGATCAAGAAAGCACTCAA+TGG	0.551774	1_3:+72119421	Msa0138910:CDS
AAGGAGGTTCCTTGAGCTTG+TGG	0.468534	1_3:-72119736	None:intergenic
AAGGCTAACAGTTATTGGAT+GGG	0.626092	1_3:+72119573	Msa0138910:CDS
AATATTGGAACAAATAATGG+TGG	0.628109	1_3:-72119647	None:intergenic
AATGTGTTAGATCACCATCA+TGG	0.630608	1_3:+72120052	Msa0138910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACAAGTTCACAAAATAGT+TGG	-	chr1_3:72119511-72119530	None:intergenic	30.0%
TGTCAAAGCAATTAAGAAGA+AGG	+	chr1_3:72119612-72119631	Msa0138910:CDS	30.0%
TGAAGTTGTAGGTTCAATAT+TGG	-	chr1_3:72119665-72119684	None:intergenic	30.0%
GAATCTTTAGATGAAGTTGT+AGG	-	chr1_3:72119676-72119695	None:intergenic	30.0%
TATGTATGACATTCAATGGT+TGG	-	chr1_3:72119990-72120009	None:intergenic	30.0%
TATTCAGTGATATGAGATGA+TGG	-	chr1_3:72120030-72120049	None:intergenic	30.0%
AACTATATAGAACACTACAG+TGG	+	chr1_3:72120087-72120106	Msa0138910:CDS	30.0%
AGACACTACATGAAAAGTAA+AGG	+	chr1_3:72120212-72120231	Msa0138910:three_prime_UTR	30.0%
ATGTCACAGAATCATGATAT+TGG	-	chr1_3:72120251-72120270	None:intergenic	30.0%
AGTTTGCAATAGAAGTAAGA+AGG	+	chr1_3:72120312-72120331	Msa0138910:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	72119274	72120526	72119274	ID=Msa0138910;Name=Msa0138910
chr1_3	mRNA	72119274	72120526	72119274	ID=Msa0138910-mRNA-1;Parent=Msa0138910;Name=Msa0138910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87\|1\|1\|1\|1\|1\|2\|341\|245
chr1_3	exon	72119274	72119451	72119274	ID=Msa0138910-mRNA-1:exon:25130;Parent=Msa0138910-mRNA-1
chr1_3	exon	72119539	72120526	72119539	ID=Msa0138910-mRNA-1:exon:25131;Parent=Msa0138910-mRNA-1
chr1_3	five_prime_UTR	72119274	72119360	72119274	ID=Msa0138910-mRNA-1:five_prime_utr;Parent=Msa0138910-mRNA-1
chr1_3	CDS	72119361	72119451	72119361	ID=Msa0138910-mRNA-1:cds;Parent=Msa0138910-mRNA-1
chr1_3	CDS	72119539	72120185	72119539	ID=Msa0138910-mRNA-1:cds;Parent=Msa0138910-mRNA-1
chr1_3	three_prime_UTR	72120186	72120526	72120186	ID=Msa0138910-mRNA-1:three_prime_utr;Parent=Msa0138910-mRNA-1

Gene Sequence

>Msa0138910

ATGCAGACACCTCGAGTCACAACGATACAAGTCCGAGTTGATTGTAACGGATGTGCGCAGAAGATCAAGAAAGCACTCAATGGCATCAATGGTATACATGATCTTCTCGTTGACTTCGATCGACAAAGGCTAACAGTTATTGGATGGGCAGATCCAGAAAATATTGTCAAAGCAATTAAGAAGAAGGCAAAGAAGAATGCCACCATTATTTGTTCCAATATTGAACCTACAACTTCATCTAAAGATTCTAAACCAACAAAACCAAAACCAAAAGAAAATCTTCAAGCTCCACAAGCTCAAGGAACCTCCTTTCCAGAACCAATGGTTGAGGCAACACCATCATCACCAACACCTACATGGCACAATGCAAGACAGCAGTGGCAGAACAATCTAGGAACTGAAGATGCAGAAGAGGCTCATATGTTACACCATCATCGGCCTAACCATGTTAACAGAATTGGTTCTGGGAATAACTATGTTGACCATAGAAACAGATTATACCATAATGACCCTGTATTTCTACAAGAGCCATCTAAAATCCAACCATTGAATGTCATACATAGTTACAATACATACATGCCATCATCTCATATCACTGAATATGAATGTGTTAGATCACCATCATGGCACACACATTACAACTATATAGAACACTACAGTGGAGACTACAATGACAACAATGTAGATATAGCAGCCATGTTCAGCGATGACAATCCCAATGCATGTACCATAGTCTAG

Protein sequence

>Msa0138910

MQTPRVTTIQVRVDCNGCAQKIKKALNGINGIHDLLVDFDRQRLTVIGWADPENIVKAIKKKAKKNATIICSNIEPTTSSKDSKPTKPKPKENLQAPQAQGTSFPEPMVEATPSSPTPTWHNARQQWQNNLGTEDAEEAHMLHHHRPNHVNRIGSGNNYVDHRNRLYHNDPVFLQEPSKIQPLNVIHSYNTYMPSSHITEYECVRSPSWHTHYNYIEHYSGDYNDNNVDIAAMFSDDNPNACTIV*