Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862170 | XP_003617458.1 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.99e-112 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862170 | sp|Q682H0|HA22F_ARATH | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.43e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862170 | B7FNC9 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 2.86e-112 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005390 | Msa0862170 | 0.808245 | 3.405672e-50 | -8.615850e-47 |
| Msa0053850 | Msa0862170 | 0.810904 | 9.139332e-51 | -8.615850e-47 |
| Msa0069350 | Msa0862170 | 0.806963 | 6.372226e-50 | -8.615850e-47 |
| Msa0627090 | Msa0862170 | 0.815309 | 9.877890e-52 | -8.615850e-47 |
| Msa0665160 | Msa0862170 | 0.817740 | 2.819449e-52 | -8.615850e-47 |
| Msa0741970 | Msa0862170 | 0.935969 | 3.664934e-97 | -8.615850e-47 |
| Msa0781890 | Msa0862170 | 0.814377 | 1.588982e-51 | -8.615850e-47 |
| Msa0786230 | Msa0862170 | 0.899478 | 1.904401e-77 | -8.615850e-47 |
| Msa0823170 | Msa0862170 | 0.929708 | 4.712382e-93 | -8.615850e-47 |
| Msa0138910 | Msa0862170 | 0.809280 | 2.045914e-50 | -8.615850e-47 |
| Msa0155180 | Msa0862170 | 0.802410 | 5.684592e-49 | -8.615850e-47 |
| Msa0182400 | Msa0862170 | 0.821867 | 3.212472e-53 | -8.615850e-47 |
| Msa0382530 | Msa0862170 | 0.805211 | 1.489632e-49 | -8.615850e-47 |
| Msa0427820 | Msa0862170 | 0.857562 | 1.499829e-62 | -8.615850e-47 |
| Msa0474060 | Msa0862170 | 0.858346 | 8.773555e-63 | -8.615850e-47 |
| Msa0325720 | Msa0862170 | 0.810780 | 9.722380e-51 | -8.615850e-47 |
| Msa0518680 | Msa0862170 | 0.840111 | 1.058461e-57 | -8.615850e-47 |
| Msa0525210 | Msa0862170 | 0.802906 | 4.491645e-49 | -8.615850e-47 |
| Msa0530390 | Msa0862170 | 0.822991 | 1.761258e-53 | -8.615850e-47 |
| Msa0862170 | Msa1060340 | 0.838163 | 3.384928e-57 | -8.615850e-47 |
| Msa0862170 | Msa1360930 | 0.828059 | 1.109504e-54 | -8.615850e-47 |
| Msa0862170 | Msa1401520 | 0.800596 | 1.338356e-48 | -8.615850e-47 |
| Msa0862170 | Msa1404480 | 0.826911 | 2.091385e-54 | -8.615850e-47 |
| Msa0862170 | Msa1435630 | 0.806093 | 9.723636e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862170 | MtrunA17_Chr5g0443431 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 5.51e-116 | 324 |
| Msa0862170 | MtrunA17_Chr3g0097141 | 79.114 | 158 | 32 | 1 | 1 | 157 | 1 | 158 | 2.23e-94 | 270 |
| Msa0862170 | MtrunA17_Chr4g0060581 | 51.333 | 150 | 71 | 1 | 4 | 153 | 12 | 159 | 1.25e-46 | 149 |
| Msa0862170 | MtrunA17_Chr5g0416561 | 44.578 | 166 | 74 | 2 | 2 | 155 | 64 | 223 | 1.39e-40 | 136 |
| Msa0862170 | MtrunA17_Chr3g0132031 | 48.760 | 121 | 56 | 1 | 1 | 121 | 1 | 115 | 7.23e-34 | 116 |
| Msa0862170 | MtrunA17_Chr8g0386221 | 50.962 | 104 | 51 | 0 | 1 | 104 | 1 | 104 | 5.91e-33 | 112 |
| Msa0862170 | MtrunA17_Chr4g0049651 | 33.088 | 136 | 77 | 2 | 17 | 147 | 20 | 146 | 2.34e-20 | 86.7 |
| Msa0862170 | MtrunA17_Chr4g0049701 | 31.159 | 138 | 81 | 2 | 17 | 149 | 17 | 145 | 9.12e-20 | 84.0 |
| Msa0862170 | MtrunA17_Chr4g0049671 | 32.540 | 126 | 71 | 2 | 27 | 147 | 21 | 137 | 4.73e-17 | 77.0 |
| Msa0862170 | MtrunA17_Chr5g0403731 | 29.688 | 128 | 78 | 2 | 7 | 134 | 28 | 143 | 2.78e-14 | 67.0 |
| Msa0862170 | MtrunA17_Chr5g0427761 | 34.524 | 84 | 55 | 0 | 17 | 100 | 22 | 105 | 5.81e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862170 | AT2G42820.1 | 63.291 | 158 | 57 | 1 | 1 | 157 | 1 | 158 | 2.47e-74 | 219 |
| Msa0862170 | AT1G74520.1 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0862170 | AT1G74520.2 | 46.053 | 152 | 80 | 1 | 4 | 155 | 9 | 158 | 4.24e-42 | 138 |
| Msa0862170 | AT1G69700.1 | 44.966 | 149 | 79 | 1 | 2 | 147 | 9 | 157 | 4.88e-37 | 125 |
| Msa0862170 | AT5G50720.1 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 2.23e-35 | 119 |
| Msa0862170 | AT5G62490.1 | 56.842 | 95 | 41 | 0 | 7 | 101 | 12 | 106 | 1.40e-34 | 119 |
| Msa0862170 | AT4G24960.1 | 45.669 | 127 | 68 | 1 | 8 | 134 | 8 | 133 | 4.15e-32 | 112 |
| Msa0862170 | AT4G24960.3 | 40.441 | 136 | 71 | 1 | 20 | 155 | 1 | 126 | 1.31e-29 | 105 |
| Msa0862170 | AT4G24960.2 | 41.748 | 103 | 59 | 1 | 32 | 134 | 1 | 102 | 7.63e-23 | 87.4 |
| Msa0862170 | AT4G36720.1 | 36.842 | 95 | 56 | 1 | 7 | 101 | 36 | 126 | 5.81e-16 | 72.0 |
Find 46 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAGATTAATGAAGTTT+TGG | 0.269958 | 5_4:-61782944 | None:intergenic |
| AGGACATACGTCAAGAAATT+TGG | 0.280571 | 5_4:+61783824 | Msa0862170:CDS |
| ATGCTTCTTTGCTTCTTTCT+CGG | 0.287521 | 5_4:-61784091 | None:intergenic |
| GTCAAGAAATTTGGTAACTA+TGG | 0.297751 | 5_4:+61783833 | Msa0862170:CDS |
| ACCAACAGTGGCTAACATAT+TGG | 0.311228 | 5_4:+61783552 | Msa0862170:CDS |
| GAACGTTATATTGATAGATT+TGG | 0.323087 | 5_4:+61783926 | Msa0862170:CDS |
| CCAACAGTGGCTAACATATT+GGG | 0.341811 | 5_4:+61783553 | Msa0862170:CDS |
| CAACTTACAAGGTCCTATAT+TGG | 0.344124 | 5_4:+61783609 | Msa0862170:CDS |
| ATCACTCTCTCAAATGCATC+TGG | 0.360770 | 5_4:-61783950 | None:intergenic |
| ATATCAATAGGTTTCCCATT+TGG | 0.373951 | 5_4:+61783720 | Msa0862170:intron |
| AGACATTTGGACACAACAAT+AGG | 0.378599 | 5_4:+61783006 | Msa0862170:CDS |
| ATTGCTGAACCTACCAATAT+AGG | 0.380907 | 5_4:-61783622 | None:intergenic |
| AAGCTTCATGTATGGCCAAA+TGG | 0.383376 | 5_4:-61783735 | None:intergenic |
| TGGAGCAATACTAAGACATT+TGG | 0.388072 | 5_4:+61782993 | Msa0862170:CDS |
| AGAGTTGGAGCAAAAGATTA+TGG | 0.394037 | 5_4:-61782919 | None:intergenic |
| CTTCGAGCTTTCAACTTACA+AGG | 0.426910 | 5_4:+61783598 | Msa0862170:CDS |
| AAAATCATCATGGGTGTCCT+TGG | 0.439409 | 5_4:+61782973 | Msa0862170:exon |
| AGCTTCATGTATGGCCAAAT+GGG | 0.440653 | 5_4:-61783734 | None:intergenic |
| TTCTTCTTCCCATGCCAGCT+TGG | 0.474007 | 5_4:-61784133 | None:intergenic |
| GACATTTGGACACAACAATA+GGG | 0.477953 | 5_4:+61783007 | Msa0862170:CDS |
| TCAATTTAACCAAGCTGGCA+TGG | 0.493645 | 5_4:+61784124 | Msa0862170:three_prime_UTR |
| TATTGAAAGTCCTTCAACCT+TGG | 0.507265 | 5_4:+61783526 | Msa0862170:CDS |
| TTTATTCTTAATTAATCCAA+GGG | 0.520414 | 5_4:-61784300 | None:intergenic |
| TGAAGCTTGTGTTCTGCGTA+TGG | 0.521277 | 5_4:+61783750 | Msa0862170:CDS |
| TGTTGGTCATCCAAGGTTGA+AGG | 0.521506 | 5_4:-61783536 | None:intergenic |
| AGAACCTTCTTGTACTCCTC+AGG | 0.524082 | 5_4:-61783869 | None:intergenic |
| CCCAATATGTTAGCCACTGT+TGG | 0.527231 | 5_4:-61783553 | None:intergenic |
| ATGGAATCAATGTTGTATTG+TGG | 0.528844 | 5_4:-61782900 | None:intergenic |
| CAATTTAACCAAGCTGGCAT+GGG | 0.541105 | 5_4:+61784125 | Msa0862170:three_prime_UTR |
| CAGAACACAAGCTTCATGTA+TGG | 0.542978 | 5_4:-61783743 | None:intergenic |
| TAGCCACTGTTGGTCATCCA+AGG | 0.555283 | 5_4:-61783543 | None:intergenic |
| AGGATAAAGAAGCATTACTC+CGG | 0.560010 | 5_4:-61783398 | None:intergenic |
| TTGGTACTGCCAATGTTCAA+TGG | 0.561469 | 5_4:+61783773 | Msa0862170:CDS |
| GCTTGTGTTCTGCGTATGGT+TGG | 0.576715 | 5_4:+61783754 | Msa0862170:CDS |
| GGATAAAGAAGCATTACTCC+GGG | 0.584585 | 5_4:-61783397 | None:intergenic |
| GAGCGTCAATTTAACCAAGC+TGG | 0.586351 | 5_4:+61784119 | Msa0862170:three_prime_UTR |
| TCATAGATACGCATCAATGA+GGG | 0.589923 | 5_4:+61783502 | Msa0862170:intron |
| ATCATAGATACGCATCAATG+AGG | 0.601236 | 5_4:+61783501 | Msa0862170:intron |
| TCACTCTCTCAAATGCATCT+GGG | 0.601880 | 5_4:-61783949 | None:intergenic |
| ACTTCATTAATCTCTCCACC+TGG | 0.615826 | 5_4:+61782949 | Msa0862170:five_prime_UTR |
| TAAGCTGCTCCATTGAACAT+TGG | 0.632735 | 5_4:-61783782 | None:intergenic |
| TTATCCTGAGGAGTACAAGA+AGG | 0.638050 | 5_4:+61783865 | Msa0862170:CDS |
| AATGTCTTAGTATTGCTCCA+AGG | 0.660944 | 5_4:-61782990 | None:intergenic |
| ACATATATGAGAATTATGCA+AGG | 0.691799 | 5_4:+61783804 | Msa0862170:CDS |
| CAACCTTGGATGACCAACAG+TGG | 0.691907 | 5_4:+61783540 | Msa0862170:CDS |
| TGGAAATTACAATTATCCTG+AGG | 0.710511 | 5_4:+61783853 | Msa0862170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTATCTTTTTATTGT+TGG | + | chr5_4:61783140-61783159 | Msa0862170:intron | 10.0% |
| !! | TAAAGATATATTTATAACTT+TGG | - | chr5_4:61784006-61784025 | None:intergenic | 10.0% |
| !!! | TATAATTATCTTTTTATTGT+TGG | + | chr5_4:61783140-61783159 | Msa0862170:intron | 10.0% |
| !! | TAAAGATATATTTATAACTT+TGG | - | chr5_4:61784006-61784025 | None:intergenic | 10.0% |
| !! | AAAAGATAATTATAGAAAAG+TGG | - | chr5_4:61783134-61783153 | None:intergenic | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_4:61783684-61783703 | Msa0862170:intron | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_4:61784303-61784322 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_4:61784304-61784323 | None:intergenic | 15.0% |
| !! | AAAAGATAATTATAGAAAAG+TGG | - | chr5_4:61783134-61783153 | None:intergenic | 15.0% |
| !!! | ACAATTTGATAATATTTATC+TGG | + | chr5_4:61783684-61783703 | Msa0862170:intron | 15.0% |
| !! | TTTATTCTTAATTAATCCAA+GGG | - | chr5_4:61784303-61784322 | None:intergenic | 15.0% |
| !!! | TTTTATTCTTAATTAATCCA+AGG | - | chr5_4:61784304-61784323 | None:intergenic | 15.0% |
| !!! | AATTATCTTTTTATTGTTGG+TGG | + | chr5_4:61783143-61783162 | Msa0862170:intron | 20.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_4:61783239-61783258 | Msa0862170:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_4:61783421-61783440 | None:intergenic | 20.0% |
| !!! | CTATTTTCACTTTATATTTC+AGG | + | chr5_4:61784068-61784087 | Msa0862170:intron | 20.0% |
| !!! | AATTATCTTTTTATTGTTGG+TGG | + | chr5_4:61783143-61783162 | Msa0862170:intron | 20.0% |
| !! | TTCTATAATTATCTAGATGA+AGG | + | chr5_4:61783239-61783258 | Msa0862170:intron | 20.0% |
| !! | AATATGATCATTACTTACAA+AGG | - | chr5_4:61783421-61783440 | None:intergenic | 20.0% |
| !!! | CTATTTTCACTTTATATTTC+AGG | + | chr5_4:61784068-61784087 | Msa0862170:intron | 20.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_4:61783300-61783319 | Msa0862170:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTAAG+AGG | - | chr5_4:61783362-61783381 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_4:61783804-61783823 | Msa0862170:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_4:61783926-61783945 | Msa0862170:CDS | 25.0% |
| ! | GAAATTCTTTCAAAACACAT+GGG | + | chr5_4:61783300-61783319 | Msa0862170:intron | 25.0% |
| ! | AAAAGTAGGATGTTATTAAG+AGG | - | chr5_4:61783362-61783381 | None:intergenic | 25.0% |
| ! | ACATATATGAGAATTATGCA+AGG | + | chr5_4:61783804-61783823 | Msa0862170:CDS | 25.0% |
| ! | GAACGTTATATTGATAGATT+TGG | + | chr5_4:61783926-61783945 | Msa0862170:CDS | 25.0% |
| ATGGAATCAATGTTGTATTG+TGG | - | chr5_4:61782903-61782922 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_4:61782937-61782956 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_4:61782947-61782966 | None:intergenic | 30.0% |
| CATAAAATATGCAAGGTTTG+GGG | - | chr5_4:61783181-61783200 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAGGTTT+GGG | - | chr5_4:61783182-61783201 | None:intergenic | 30.0% | |
| TGCATAAAATATGCAAGGTT+TGG | - | chr5_4:61783183-61783202 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr5_4:61783188-61783207 | None:intergenic | 30.0% | |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_4:61783282-61783301 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_4:61783299-61783318 | Msa0862170:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_4:61783720-61783739 | Msa0862170:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_4:61783833-61783852 | Msa0862170:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_4:61783853-61783872 | Msa0862170:CDS | 30.0% | |
| ATGGAATCAATGTTGTATTG+TGG | - | chr5_4:61782903-61782922 | None:intergenic | 30.0% | |
| !!! | AATGAAGTTTTGGAAAGAGT+TGG | - | chr5_4:61782937-61782956 | None:intergenic | 30.0% |
| ! | TGGAGAGATTAATGAAGTTT+TGG | - | chr5_4:61782947-61782966 | None:intergenic | 30.0% |
| CATAAAATATGCAAGGTTTG+GGG | - | chr5_4:61783181-61783200 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAGGTTT+GGG | - | chr5_4:61783182-61783201 | None:intergenic | 30.0% | |
| TGCATAAAATATGCAAGGTT+TGG | - | chr5_4:61783183-61783202 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr5_4:61783188-61783207 | None:intergenic | 30.0% | |
| !! | TCGTACATGCAATATTTTGA+AGG | - | chr5_4:61783282-61783301 | None:intergenic | 30.0% |
| CGAAATTCTTTCAAAACACA+TGG | + | chr5_4:61783299-61783318 | Msa0862170:intron | 30.0% | |
| ATATCAATAGGTTTCCCATT+TGG | + | chr5_4:61783720-61783739 | Msa0862170:intron | 30.0% | |
| ! | GTCAAGAAATTTGGTAACTA+TGG | + | chr5_4:61783833-61783852 | Msa0862170:CDS | 30.0% |
| TGGAAATTACAATTATCCTG+AGG | + | chr5_4:61783853-61783872 | Msa0862170:CDS | 30.0% | |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_4:61782922-61782941 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_4:61782993-61783012 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_4:61782993-61783012 | Msa0862170:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_4:61783006-61783025 | Msa0862170:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_4:61783007-61783026 | Msa0862170:CDS | 35.0% | |
| !!! | ATCTTTTTATTGTTGGTGGC+CGG | + | chr5_4:61783147-61783166 | Msa0862170:intron | 35.0% |
| ! | TGAGCTTAACTCAGTTGATA+TGG | - | chr5_4:61783210-61783229 | None:intergenic | 35.0% |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_4:61783318-61783337 | Msa0862170:intron | 35.0% | |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_4:61783401-61783420 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_4:61783501-61783520 | Msa0862170:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_4:61783502-61783521 | Msa0862170:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_4:61783526-61783545 | Msa0862170:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_4:61783609-61783628 | Msa0862170:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_4:61783613-61783632 | Msa0862170:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_4:61783625-61783644 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_4:61783824-61783843 | Msa0862170:CDS | 35.0% | |
| ATGCTTCTTTGCTTCTTTCT+CGG | - | chr5_4:61784094-61784113 | None:intergenic | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_4:61784284-61784303 | Msa0862170:three_prime_UTR | 35.0% |
| AGAGTTGGAGCAAAAGATTA+TGG | - | chr5_4:61782922-61782941 | None:intergenic | 35.0% | |
| AATGTCTTAGTATTGCTCCA+AGG | - | chr5_4:61782993-61783012 | None:intergenic | 35.0% | |
| TGGAGCAATACTAAGACATT+TGG | + | chr5_4:61782993-61783012 | Msa0862170:CDS | 35.0% | |
| AGACATTTGGACACAACAAT+AGG | + | chr5_4:61783006-61783025 | Msa0862170:CDS | 35.0% | |
| GACATTTGGACACAACAATA+GGG | + | chr5_4:61783007-61783026 | Msa0862170:CDS | 35.0% | |
| !!! | ATCTTTTTATTGTTGGTGGC+CGG | + | chr5_4:61783147-61783166 | Msa0862170:intron | 35.0% |
| ! | TGAGCTTAACTCAGTTGATA+TGG | - | chr5_4:61783210-61783229 | None:intergenic | 35.0% |
| ATGGGACACACTCTAAATTT+AGG | + | chr5_4:61783318-61783337 | Msa0862170:intron | 35.0% | |
| !! | AGGATAAAGAAGCATTACTC+CGG | - | chr5_4:61783401-61783420 | None:intergenic | 35.0% |
| ATCATAGATACGCATCAATG+AGG | + | chr5_4:61783501-61783520 | Msa0862170:intron | 35.0% | |
| TCATAGATACGCATCAATGA+GGG | + | chr5_4:61783502-61783521 | Msa0862170:intron | 35.0% | |
| TATTGAAAGTCCTTCAACCT+TGG | + | chr5_4:61783526-61783545 | Msa0862170:CDS | 35.0% | |
| CAACTTACAAGGTCCTATAT+TGG | + | chr5_4:61783609-61783628 | Msa0862170:CDS | 35.0% | |
| TTACAAGGTCCTATATTGGT+AGG | + | chr5_4:61783613-61783632 | Msa0862170:intron | 35.0% | |
| ATTGCTGAACCTACCAATAT+AGG | - | chr5_4:61783625-61783644 | None:intergenic | 35.0% | |
| AGGACATACGTCAAGAAATT+TGG | + | chr5_4:61783824-61783843 | Msa0862170:CDS | 35.0% | |
| ATGCTTCTTTGCTTCTTTCT+CGG | - | chr5_4:61784094-61784113 | None:intergenic | 35.0% | |
| ! | TTTTATGTACATCGATCCCT+TGG | + | chr5_4:61784284-61784303 | Msa0862170:three_prime_UTR | 35.0% |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_4:61782949-61782968 | Msa0862170:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_4:61782963-61782982 | Msa0862170:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_4:61782964-61782983 | Msa0862170:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_4:61782970-61782989 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_4:61782973-61782992 | Msa0862170:exon | 40.0% | |
| !!! | TCTTTTTATTGTTGGTGGCC+GGG | + | chr5_4:61783148-61783167 | Msa0862170:intron | 40.0% |
| CTGGTGGTACACAAAAAAGT+AGG | - | chr5_4:61783376-61783395 | None:intergenic | 40.0% | |
| !!! | CTACTTTTTTGTGTACCACC+AGG | + | chr5_4:61783374-61783393 | Msa0862170:intron | 40.0% |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_4:61783400-61783419 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_4:61783552-61783571 | Msa0862170:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_4:61783553-61783572 | Msa0862170:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_4:61783598-61783617 | Msa0862170:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_4:61783737-61783756 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_4:61783738-61783757 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_4:61783746-61783765 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_4:61783773-61783792 | Msa0862170:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_4:61783785-61783804 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_4:61783865-61783884 | Msa0862170:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_4:61783952-61783971 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_4:61783953-61783972 | None:intergenic | 40.0% | |
| TCAATTTAACCAAGCTGGCA+TGG | + | chr5_4:61784124-61784143 | Msa0862170:three_prime_UTR | 40.0% | |
| CAATTTAACCAAGCTGGCAT+GGG | + | chr5_4:61784125-61784144 | Msa0862170:three_prime_UTR | 40.0% | |
| ACTTCATTAATCTCTCCACC+TGG | + | chr5_4:61782949-61782968 | Msa0862170:five_prime_UTR | 40.0% | |
| TCCACCTGGAAAAATCATCA+TGG | + | chr5_4:61782963-61782982 | Msa0862170:exon | 40.0% | |
| CCACCTGGAAAAATCATCAT+GGG | + | chr5_4:61782964-61782983 | Msa0862170:exon | 40.0% | |
| ! | ACACCCATGATGATTTTTCC+AGG | - | chr5_4:61782970-61782989 | None:intergenic | 40.0% |
| AAAATCATCATGGGTGTCCT+TGG | + | chr5_4:61782973-61782992 | Msa0862170:exon | 40.0% | |
| !!! | TCTTTTTATTGTTGGTGGCC+GGG | + | chr5_4:61783148-61783167 | Msa0862170:intron | 40.0% |
| CTGGTGGTACACAAAAAAGT+AGG | - | chr5_4:61783376-61783395 | None:intergenic | 40.0% | |
| !!! | CTACTTTTTTGTGTACCACC+AGG | + | chr5_4:61783374-61783393 | Msa0862170:intron | 40.0% |
| !! | GGATAAAGAAGCATTACTCC+GGG | - | chr5_4:61783400-61783419 | None:intergenic | 40.0% |
| ACCAACAGTGGCTAACATAT+TGG | + | chr5_4:61783552-61783571 | Msa0862170:CDS | 40.0% | |
| CCAACAGTGGCTAACATATT+GGG | + | chr5_4:61783553-61783572 | Msa0862170:CDS | 40.0% | |
| CTTCGAGCTTTCAACTTACA+AGG | + | chr5_4:61783598-61783617 | Msa0862170:CDS | 40.0% | |
| AGCTTCATGTATGGCCAAAT+GGG | - | chr5_4:61783737-61783756 | None:intergenic | 40.0% | |
| AAGCTTCATGTATGGCCAAA+TGG | - | chr5_4:61783738-61783757 | None:intergenic | 40.0% | |
| CAGAACACAAGCTTCATGTA+TGG | - | chr5_4:61783746-61783765 | None:intergenic | 40.0% | |
| TTGGTACTGCCAATGTTCAA+TGG | + | chr5_4:61783773-61783792 | Msa0862170:CDS | 40.0% | |
| TAAGCTGCTCCATTGAACAT+TGG | - | chr5_4:61783785-61783804 | None:intergenic | 40.0% | |
| ! | TTATCCTGAGGAGTACAAGA+AGG | + | chr5_4:61783865-61783884 | Msa0862170:CDS | 40.0% |
| TCACTCTCTCAAATGCATCT+GGG | - | chr5_4:61783952-61783971 | None:intergenic | 40.0% | |
| ATCACTCTCTCAAATGCATC+TGG | - | chr5_4:61783953-61783972 | None:intergenic | 40.0% | |
| TCAATTTAACCAAGCTGGCA+TGG | + | chr5_4:61784124-61784143 | Msa0862170:three_prime_UTR | 40.0% | |
| CAATTTAACCAAGCTGGCAT+GGG | + | chr5_4:61784125-61784144 | Msa0862170:three_prime_UTR | 40.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_4:61782967-61782986 | None:intergenic | 45.0% |
| TCAACTGAGTTAAGCTCACG+TGG | + | chr5_4:61783212-61783231 | Msa0862170:intron | 45.0% | |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_4:61783539-61783558 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_4:61783556-61783575 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_4:61783750-61783769 | Msa0862170:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_4:61783872-61783891 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_4:61784119-61784138 | Msa0862170:three_prime_UTR | 45.0% | |
| ! | CCCATGATGATTTTTCCAGG+TGG | - | chr5_4:61782967-61782986 | None:intergenic | 45.0% |
| TCAACTGAGTTAAGCTCACG+TGG | + | chr5_4:61783212-61783231 | Msa0862170:intron | 45.0% | |
| TGTTGGTCATCCAAGGTTGA+AGG | - | chr5_4:61783539-61783558 | None:intergenic | 45.0% | |
| CCCAATATGTTAGCCACTGT+TGG | - | chr5_4:61783556-61783575 | None:intergenic | 45.0% | |
| TGAAGCTTGTGTTCTGCGTA+TGG | + | chr5_4:61783750-61783769 | Msa0862170:CDS | 45.0% | |
| AGAACCTTCTTGTACTCCTC+AGG | - | chr5_4:61783872-61783891 | None:intergenic | 45.0% | |
| GAGCGTCAATTTAACCAAGC+TGG | + | chr5_4:61784119-61784138 | Msa0862170:three_prime_UTR | 45.0% | |
| !! | TTAATAAAAAAAATATCAAT+AGG | + | chr5_4:61783708-61783727 | Msa0862170:intron | 5.0% |
| !! | TTAATAAAAAAAATATCAAT+AGG | + | chr5_4:61783708-61783727 | Msa0862170:intron | 5.0% |
| ! | AAGGTTTGGGGTTCGAATCC+CGG | - | chr5_4:61783169-61783188 | None:intergenic | 50.0% |
| ! | TTTTTGTGTACCACCAGGCC+CGG | + | chr5_4:61783379-61783398 | Msa0862170:intron | 50.0% |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_4:61783540-61783559 | Msa0862170:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_4:61783546-61783565 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_4:61783754-61783773 | Msa0862170:CDS | 50.0% | |
| TTCTTCTTCCCATGCCAGCT+TGG | - | chr5_4:61784136-61784155 | None:intergenic | 50.0% | |
| ! | AAGGTTTGGGGTTCGAATCC+CGG | - | chr5_4:61783169-61783188 | None:intergenic | 50.0% |
| ! | TTTTTGTGTACCACCAGGCC+CGG | + | chr5_4:61783379-61783398 | Msa0862170:intron | 50.0% |
| CAACCTTGGATGACCAACAG+TGG | + | chr5_4:61783540-61783559 | Msa0862170:CDS | 50.0% | |
| TAGCCACTGTTGGTCATCCA+AGG | - | chr5_4:61783546-61783565 | None:intergenic | 50.0% | |
| GCTTGTGTTCTGCGTATGGT+TGG | + | chr5_4:61783754-61783773 | Msa0862170:CDS | 50.0% | |
| TTCTTCTTCCCATGCCAGCT+TGG | - | chr5_4:61784136-61784155 | None:intergenic | 50.0% | |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_4:61783395-61783414 | None:intergenic | 55.0% |
| !! | AAGAAGCATTACTCCGGGCC+TGG | - | chr5_4:61783395-61783414 | None:intergenic | 55.0% |
| AAGCATTACTCCGGGCCTGG+TGG | - | chr5_4:61783392-61783411 | None:intergenic | 60.0% | |
| AAGCATTACTCCGGGCCTGG+TGG | - | chr5_4:61783392-61783411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 61782895 | 61784326 | 61782895 | ID=Msa0862170;Name=Msa0862170 |
| chr5_4 | mRNA | 61782895 | 61784326 | 61782895 | ID=Msa0862170-mRNA-1;Parent=Msa0862170;Name=Msa0862170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=87|1|1|1|0.5|0.4|5|210|157 |
| chr5_4 | exon | 61782895 | 61783028 | 61782895 | ID=Msa0862170-mRNA-1:exon:19168;Parent=Msa0862170-mRNA-1 |
| chr5_4 | exon | 61783396 | 61783422 | 61783396 | ID=Msa0862170-mRNA-1:exon:19169;Parent=Msa0862170-mRNA-1 |
| chr5_4 | exon | 61783508 | 61783630 | 61783508 | ID=Msa0862170-mRNA-1:exon:19170;Parent=Msa0862170-mRNA-1 |
| chr5_4 | exon | 61783730 | 61783979 | 61783730 | ID=Msa0862170-mRNA-1:exon:19171;Parent=Msa0862170-mRNA-1 |
| chr5_4 | exon | 61784090 | 61784326 | 61784090 | ID=Msa0862170-mRNA-1:exon:19172;Parent=Msa0862170-mRNA-1 |
| chr5_4 | five_prime_UTR | 61782895 | 61782981 | 61782895 | ID=Msa0862170-mRNA-1:five_prime_utr;Parent=Msa0862170-mRNA-1 |
| chr5_4 | CDS | 61782982 | 61783028 | 61782982 | ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1 |
| chr5_4 | CDS | 61783396 | 61783422 | 61783396 | ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1 |
| chr5_4 | CDS | 61783508 | 61783630 | 61783508 | ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1 |
| chr5_4 | CDS | 61783730 | 61783979 | 61783730 | ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1 |
| chr5_4 | CDS | 61784090 | 61784116 | 61784090 | ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1 |
| chr5_4 | three_prime_UTR | 61784117 | 61784326 | 61784117 | ID=Msa0862170-mRNA-1:three_prime_utr;Parent=Msa0862170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
