AlfalfaGEDB | Msa0862170

M. sativa cultivar zhongmu-4 / Msa0862170

KEGG: K17279
GO: -
PFAM: PF03134.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862170	XP_003617458.1	98.726	157	2	0	1	157	1	157	5.99e-112	324

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862170	sp\|Q682H0\|HA22F_ARATH	63.291	158	57	1	1	157	1	158	2.43e-73	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862170	B7FNC9	98.726	157	2	0	1	157	1	157	2.86e-112	324

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005390	Msa0862170	0.808245	3.405672e-50	-8.615850e-47
Msa0053850	Msa0862170	0.810904	9.139332e-51	-8.615850e-47
Msa0069350	Msa0862170	0.806963	6.372226e-50	-8.615850e-47
Msa0138910	Msa0862170	0.809280	2.045914e-50	-8.615850e-47
Msa0155180	Msa0862170	0.802410	5.684592e-49	-8.615850e-47
Msa0182400	Msa0862170	0.821867	3.212472e-53	-8.615850e-47
Msa0325720	Msa0862170	0.810780	9.722380e-51	-8.615850e-47
Msa0382530	Msa0862170	0.805211	1.489632e-49	-8.615850e-47
Msa0427820	Msa0862170	0.857562	1.499829e-62	-8.615850e-47
Msa0474060	Msa0862170	0.858346	8.773555e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862170	MtrunA17_Chr5g0443431	98.726	157	2	0	1	157	1	157	5.51e-116	324
Msa0862170	MtrunA17_Chr3g0097141	79.114	158	32	1	1	157	1	158	2.23e-94	270
Msa0862170	MtrunA17_Chr4g0060581	51.333	150	71	1	4	153	12	159	1.25e-46	149
Msa0862170	MtrunA17_Chr5g0416561	44.578	166	74	2	2	155	64	223	1.39e-40	136
Msa0862170	MtrunA17_Chr3g0132031	48.760	121	56	1	1	121	1	115	7.23e-34	116
Msa0862170	MtrunA17_Chr8g0386221	50.962	104	51	0	1	104	1	104	5.91e-33	112
Msa0862170	MtrunA17_Chr4g0049651	33.088	136	77	2	17	147	20	146	2.34e-20	86.7
Msa0862170	MtrunA17_Chr4g0049701	31.159	138	81	2	17	149	17	145	9.12e-20	84.0
Msa0862170	MtrunA17_Chr4g0049671	32.540	126	71	2	27	147	21	137	4.73e-17	77.0
Msa0862170	MtrunA17_Chr5g0403731	29.688	128	78	2	7	134	28	143	2.78e-14	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862170	AT2G42820.1	63.291	158	57	1	1	157	1	158	2.47e-74	219
Msa0862170	AT1G74520.1	46.053	152	80	1	4	155	9	158	4.24e-42	138
Msa0862170	AT1G74520.2	46.053	152	80	1	4	155	9	158	4.24e-42	138
Msa0862170	AT1G69700.1	44.966	149	79	1	2	147	9	157	4.88e-37	125
Msa0862170	AT5G50720.1	58.095	105	44	0	1	105	1	105	2.23e-35	119
Msa0862170	AT5G62490.1	56.842	95	41	0	7	101	12	106	1.40e-34	119
Msa0862170	AT4G24960.1	45.669	127	68	1	8	134	8	133	4.15e-32	112
Msa0862170	AT4G24960.3	40.441	136	71	1	20	155	1	126	1.31e-29	105
Msa0862170	AT4G24960.2	41.748	103	59	1	32	134	1	102	7.63e-23	87.4
Msa0862170	AT4G36720.1	36.842	95	56	1	7	101	36	126	5.81e-16	72.0

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Find 46 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCATGGGTGTCCT+TGG	0.439409	5_4:+61782973	Msa0862170:exon
AAGCTTCATGTATGGCCAAA+TGG	0.383376	5_4:-61783735	None:intergenic
AATGTCTTAGTATTGCTCCA+AGG	0.660944	5_4:-61782990	None:intergenic
ACATATATGAGAATTATGCA+AGG	0.691799	5_4:+61783804	Msa0862170:CDS
ACCAACAGTGGCTAACATAT+TGG	0.311228	5_4:+61783552	Msa0862170:CDS
ACTTCATTAATCTCTCCACC+TGG	0.615826	5_4:+61782949	Msa0862170:five_prime_UTR
AGAACCTTCTTGTACTCCTC+AGG	0.524082	5_4:-61783869	None:intergenic
AGACATTTGGACACAACAAT+AGG	0.378599	5_4:+61783006	Msa0862170:CDS
AGAGTTGGAGCAAAAGATTA+TGG	0.394037	5_4:-61782919	None:intergenic
AGCTTCATGTATGGCCAAAT+GGG	0.440653	5_4:-61783734	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAATCAATGTTGTATTG+TGG	-	chr5_4:61782903-61782922	None:intergenic	30.0%
CATAAAATATGCAAGGTTTG+GGG	-	chr5_4:61783181-61783200	None:intergenic	30.0%
GCATAAAATATGCAAGGTTT+GGG	-	chr5_4:61783182-61783201	None:intergenic	30.0%
TGCATAAAATATGCAAGGTT+TGG	-	chr5_4:61783183-61783202	None:intergenic	30.0%
GACAATGCATAAAATATGCA+AGG	-	chr5_4:61783188-61783207	None:intergenic	30.0%
CGAAATTCTTTCAAAACACA+TGG	+	chr5_4:61783299-61783318	Msa0862170:intron	30.0%
ATATCAATAGGTTTCCCATT+TGG	+	chr5_4:61783720-61783739	Msa0862170:intron	30.0%
TGGAAATTACAATTATCCTG+AGG	+	chr5_4:61783853-61783872	Msa0862170:CDS	30.0%
ATGGAATCAATGTTGTATTG+TGG	-	chr5_4:61782903-61782922	None:intergenic	30.0%
CATAAAATATGCAAGGTTTG+GGG	-	chr5_4:61783181-61783200	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	61782895	61784326	61782895	ID=Msa0862170;Name=Msa0862170
chr5_4	mRNA	61782895	61784326	61782895	ID=Msa0862170-mRNA-1;Parent=Msa0862170;Name=Msa0862170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=87\|1\|1\|1\|0.5\|0.4\|5\|210\|157
chr5_4	exon	61782895	61783028	61782895	ID=Msa0862170-mRNA-1:exon:19168;Parent=Msa0862170-mRNA-1
chr5_4	exon	61783396	61783422	61783396	ID=Msa0862170-mRNA-1:exon:19169;Parent=Msa0862170-mRNA-1
chr5_4	exon	61783508	61783630	61783508	ID=Msa0862170-mRNA-1:exon:19170;Parent=Msa0862170-mRNA-1
chr5_4	exon	61783730	61783979	61783730	ID=Msa0862170-mRNA-1:exon:19171;Parent=Msa0862170-mRNA-1
chr5_4	exon	61784090	61784326	61784090	ID=Msa0862170-mRNA-1:exon:19172;Parent=Msa0862170-mRNA-1
chr5_4	five_prime_UTR	61782895	61782981	61782895	ID=Msa0862170-mRNA-1:five_prime_utr;Parent=Msa0862170-mRNA-1
chr5_4	CDS	61782982	61783028	61782982	ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1
chr5_4	CDS	61783396	61783422	61783396	ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1
chr5_4	CDS	61783508	61783630	61783508	ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1
chr5_4	CDS	61783730	61783979	61783730	ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1
chr5_4	CDS	61784090	61784116	61784090	ID=Msa0862170-mRNA-1:cds;Parent=Msa0862170-mRNA-1
chr5_4	three_prime_UTR	61784117	61784326	61784117	ID=Msa0862170-mRNA-1:three_prime_utr;Parent=Msa0862170-mRNA-1

Gene Sequence

>Msa0862170

ATGGGTGTCCTTGGAGCAATACTAAGACATTTGGACACAACAATAGGGCCCGGAGTAATGCTTCTTTATCCTTTATACGCATCAATGAGGGCTATTGAAAGTCCTTCAACCTTGGATGACCAACAGTGGCTAACATATTGGGTTTTATATTCTTTCATAACTCTCTTCGAGCTTTCAACTTACAAGGTCCTATATTGGTTTCCCATTTGGCCATACATGAAGCTTGTGTTCTGCGTATGGTTGGTACTGCCAATGTTCAATGGAGCAGCTTACATATATGAGAATTATGCAAGGACATACGTCAAGAAATTTGGTAACTATGGAAATTACAATTATCCTGAGGAGTACAAGAAGGTTCTTCATATGATGACTTTCGATGCAAGAAAAGCAGTTGAACGTTATATTGATAGATTTGGCCCAGATGCATTTGAGAGAGTGATTAGAGCAGCCGAGAAAGAAGCAAAGAAGCATTGA

Protein sequence

>Msa0862170

MGVLGAILRHLDTTIGPGVMLLYPLYASMRAIESPSTLDDQQWLTYWVLYSFITLFELSTYKVLYWFPIWPYMKLVFCVWLVLPMFNGAAYIYENYARTYVKKFGNYGNYNYPEEYKKVLHMMTFDARKAVERYIDRFGPDAFERVIRAAEKEAKKH*