AlfalfaGEDB | Msa0152120

M. sativa cultivar zhongmu-4 / Msa0152120

KEGG: K07766
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00293.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152120	XP_013466570.1	97.576	165	4	0	1	165	1	165	4.39e-116	335

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152120	sp\|Q9ZU95\|NUD17_ARATH	68.098	163	51	1	1	163	6	167	2.74e-79	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152120	G8A033	97.576	165	4	0	1	165	1	165	2.09e-116	335

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0061200	Msa0152120	0.935349	9.756533e-97	-8.615850e-47
Msa0105750	Msa0152120	0.957064	6.666296e-115	-8.615850e-47
Msa0152120	Msa0615680	0.821269	4.417238e-53	-8.615850e-47
Msa0152120	Msa0748660	0.803267	3.781508e-49	-8.615850e-47
Msa0152120	Msa0818770	0.803085	4.124336e-49	-8.615850e-47
Msa0152120	Msa1070390	0.813855	2.072046e-51	-8.615850e-47
Msa0152120	Msa1199290	0.801341	9.424662e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152120	MtrunA17_Chr1g0161131	97.576	165	4	0	1	165	1	165	4.03e-120	335
Msa0152120	MtrunA17_Chr8g0391621	81.013	158	30	0	1	158	1	158	1.85e-95	273
Msa0152120	MtrunA17_Chr3g0110281	68.098	163	49	2	1	161	32	193	3.44e-76	226
Msa0152120	MtrunA17_Chr5g0434521	60.479	167	61	3	1	165	10	173	3.14e-65	197
Msa0152120	MtrunA17_Chr6g0479111	59.748	159	60	3	1	158	72	227	1.81e-63	194
Msa0152120	MtrunA17_Chr8g0353331	47.500	160	76	3	1	153	1	159	4.89e-43	140
Msa0152120	MtrunA17_Chr7g0252391	46.875	160	74	4	1	150	1	159	8.70e-36	124
Msa0152120	MtrunA17_Chr1g0189471	46.154	65	33	2	1	64	1	64	7.24e-13	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152120	AT2G01670.1	68.098	163	51	1	1	163	6	167	2.78e-80	236
Msa0152120	AT1G14860.1	71.069	159	45	1	1	159	1	158	4.49e-80	235
Msa0152120	AT1G18300.1	54.487	156	70	1	1	155	40	195	1.44e-61	189
Msa0152120	AT1G73540.1	54.777	157	66	2	1	156	41	193	9.35e-60	184
Msa0152120	AT1G12880.1	46.108	167	76	4	1	154	1	166	9.04e-38	128
Msa0152120	AT3G26690.1	44.048	168	79	4	1	154	1	167	6.66e-37	126
Msa0152120	AT3G26690.2	44.048	168	79	4	1	154	1	167	6.66e-37	126
Msa0152120	AT3G12600.1	48.428	159	72	4	1	150	1	158	1.16e-34	120
Msa0152120	AT3G12600.2	48.299	147	66	4	13	150	4	149	1.23e-30	109

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Find 37 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTACGTACAAGAATA+TGG	0.220819	1_4:-14667190	Msa0152120:CDS
AAATCTACGTACAAGAATAT+GGG	0.505617	1_4:-14667189	Msa0152120:intron
AAGAGAGAAGATGGTTTGTT+TGG	0.367598	1_4:-14668126	None:intergenic
AAGTTGTTCCTTGACAAGTA+AGG	0.495158	1_4:+14667229	None:intergenic
ACTGGTGGTCGTCAAGTTGT+AGG	0.480361	1_4:-14668065	Msa0152120:CDS
ACTTGTTGTTAGTTCACAAA+AGG	0.426291	1_4:-14667642	Msa0152120:CDS
AGAGAATCCCTTGAAGAAGC+AGG	0.552630	1_4:-14667453	Msa0152120:CDS
AGATATAAGCAAGACATTGA+TGG	0.458567	1_4:-14667689	Msa0152120:CDS
AGATATGGTACATATTATGA+AGG	0.566362	1_4:-14667263	Msa0152120:CDS
AGGAGTTATAGGAATTGTTG+AGG	0.587265	1_4:-14667433	Msa0152120:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCAAAGATACAATGAAAC+TGG	-	chr1_4:14666672-14666691	Msa0152120:CDS	30.0%
AACTGAATTTGATGTCCAAA+AGG	+	chr1_4:14666835-14666854	None:intergenic	30.0%
TGTCTTGCTTATATCTGTAT+GGG	+	chr1_4:14667062-14667081	None:intergenic	30.0%
ATGTCTTGCTTATATCTGTA+TGG	+	chr1_4:14667063-14667082	None:intergenic	30.0%
AGATATAAGCAAGACATTGA+TGG	-	chr1_4:14667066-14667085	Msa0152120:intron	30.0%
TCATTTATGTTTCCAAAGGT+AGG	-	chr1_4:14667141-14667160	Msa0152120:intron	30.0%
CATTTATGTTTCCAAAGGTA+GGG	-	chr1_4:14667142-14667161	Msa0152120:intron	30.0%
CATATTATTGCAGCATGAAT+TGG	-	chr1_4:14667446-14667465	Msa0152120:CDS	30.0%
AAAGAAACTTCGTTATGATG+AGG	-	chr1_4:14667646-14667665	Msa0152120:CDS	30.0%
TTAGTCAAACATGACTGATA+TGG	+	chr1_4:14667705-14667724	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	14666639	14668138	14666639	ID=Msa0152120;Name=Msa0152120
chr1_4	mRNA	14666639	14668138	14666639	ID=Msa0152120-mRNA-1;Parent=Msa0152120;Name=Msa0152120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|5\|0\|165
chr1_4	exon	14668065	14668138	14668065	ID=Msa0152120-mRNA-1:exon:5754;Parent=Msa0152120-mRNA-1
chr1_4	exon	14667619	14667724	14667619	ID=Msa0152120-mRNA-1:exon:5753;Parent=Msa0152120-mRNA-1
chr1_4	exon	14667434	14667517	14667434	ID=Msa0152120-mRNA-1:exon:5752;Parent=Msa0152120-mRNA-1
chr1_4	exon	14667190	14667318	14667190	ID=Msa0152120-mRNA-1:exon:5751;Parent=Msa0152120-mRNA-1
chr1_4	exon	14666639	14666743	14666639	ID=Msa0152120-mRNA-1:exon:5750;Parent=Msa0152120-mRNA-1
chr1_4	CDS	14668065	14668138	14668065	ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1
chr1_4	CDS	14667619	14667724	14667619	ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1
chr1_4	CDS	14667434	14667517	14667434	ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1
chr1_4	CDS	14667190	14667318	14667190	ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1
chr1_4	CDS	14666639	14666743	14666639	ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1

Gene Sequence

>Msa0152120

ATGGTTTGTTTGGTATCTCGTTCTGGAAGGCAAATGCAAAGATACAATGAAACTGGTGGTCGTCAAGTTGTAGGGTGCATCCCATACAGATATAAGCAAGACATTGATGGCAATATGGGTAATGAATTGGAAGTACTTGTTGTTAGTTCACAAAAGGGTCAATCATTTATGTTTCCAAAGGGTGGATGGGAACTTGATGAATCTTTAGAAGAAGCAGCTTGTAGAGAATCCCTTGAAGAAGCAGGAGTTATAGGAATTGTTGAGCATGAATTGGGCGAATGGAGTTTCATTAGCAAAAGATATGGTACATATTATGAAGGTCACATGTTTCCCTTACTTGTCAAGGAACAACTTGAACACTGGCCTGAGAAAAATCTACGTACAAGAATATGGATGGATGTTGTTGAAGCCAGAGATGTTTGTCAGCATTGGTGGATGAAGGAAGCTTTAGATAGACTTGTTGATAGGCTAACTATACAGAAAAATAAGAACATTTAG

Protein sequence

>Msa0152120

MVCLVSRSGRQMQRYNETGGRQVVGCIPYRYKQDIDGNMGNELEVLVVSSQKGQSFMFPKGGWELDESLEEAACRESLEEAGVIGIVEHELGEWSFISKRYGTYYEGHMFPLLVKEQLEHWPEKNLRTRIWMDVVEARDVCQHWWMKEALDRLVDRLTIQKNKNI*