Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152120 | XP_013466570.1 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.39e-116 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152120 | sp|Q9ZU95|NUD17_ARATH | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.74e-79 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152120 | G8A033 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 2.09e-116 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061200 | Msa0152120 | 0.935349 | 9.756533e-97 | -8.615850e-47 |
| Msa0105750 | Msa0152120 | 0.957064 | 6.666296e-115 | -8.615850e-47 |
| Msa0152120 | Msa0615680 | 0.821269 | 4.417238e-53 | -8.615850e-47 |
| Msa0152120 | Msa0748660 | 0.803267 | 3.781508e-49 | -8.615850e-47 |
| Msa0152120 | Msa0818770 | 0.803085 | 4.124336e-49 | -8.615850e-47 |
| Msa0152120 | Msa1070390 | 0.813855 | 2.072046e-51 | -8.615850e-47 |
| Msa0152120 | Msa1199290 | 0.801341 | 9.424662e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152120 | MtrunA17_Chr1g0161131 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.03e-120 | 335 |
| Msa0152120 | MtrunA17_Chr8g0391621 | 81.013 | 158 | 30 | 0 | 1 | 158 | 1 | 158 | 1.85e-95 | 273 |
| Msa0152120 | MtrunA17_Chr3g0110281 | 68.098 | 163 | 49 | 2 | 1 | 161 | 32 | 193 | 3.44e-76 | 226 |
| Msa0152120 | MtrunA17_Chr5g0434521 | 60.479 | 167 | 61 | 3 | 1 | 165 | 10 | 173 | 3.14e-65 | 197 |
| Msa0152120 | MtrunA17_Chr6g0479111 | 59.748 | 159 | 60 | 3 | 1 | 158 | 72 | 227 | 1.81e-63 | 194 |
| Msa0152120 | MtrunA17_Chr8g0353331 | 47.500 | 160 | 76 | 3 | 1 | 153 | 1 | 159 | 4.89e-43 | 140 |
| Msa0152120 | MtrunA17_Chr7g0252391 | 46.875 | 160 | 74 | 4 | 1 | 150 | 1 | 159 | 8.70e-36 | 124 |
| Msa0152120 | MtrunA17_Chr1g0189471 | 46.154 | 65 | 33 | 2 | 1 | 64 | 1 | 64 | 7.24e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152120 | AT2G01670.1 | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.78e-80 | 236 |
| Msa0152120 | AT1G14860.1 | 71.069 | 159 | 45 | 1 | 1 | 159 | 1 | 158 | 4.49e-80 | 235 |
| Msa0152120 | AT1G18300.1 | 54.487 | 156 | 70 | 1 | 1 | 155 | 40 | 195 | 1.44e-61 | 189 |
| Msa0152120 | AT1G73540.1 | 54.777 | 157 | 66 | 2 | 1 | 156 | 41 | 193 | 9.35e-60 | 184 |
| Msa0152120 | AT1G12880.1 | 46.108 | 167 | 76 | 4 | 1 | 154 | 1 | 166 | 9.04e-38 | 128 |
| Msa0152120 | AT3G26690.1 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0152120 | AT3G26690.2 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0152120 | AT3G12600.1 | 48.428 | 159 | 72 | 4 | 1 | 150 | 1 | 158 | 1.16e-34 | 120 |
| Msa0152120 | AT3G12600.2 | 48.299 | 147 | 66 | 4 | 13 | 150 | 4 | 149 | 1.23e-30 | 109 |
Find 37 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTACGTACAAGAATA+TGG | 0.220819 | 1_4:-14667190 | Msa0152120:CDS |
| CATATTATTGCAGCATGAAT+TGG | 0.282486 | 1_4:-14667309 | Msa0152120:intron |
| CTTGAAGAAGCAGGAGTTAT+AGG | 0.288124 | 1_4:-14667444 | Msa0152120:CDS |
| GCAAGACATTGATGGCAATA+TGG | 0.292101 | 1_4:-14667681 | Msa0152120:CDS |
| GTTTGTTTGGTATCTCGTTC+TGG | 0.365455 | 1_4:-14668113 | Msa0152120:CDS |
| ATGTCTTGCTTATATCTGTA+TGG | 0.367359 | 1_4:+14667695 | None:intergenic |
| AAGAGAGAAGATGGTTTGTT+TGG | 0.367598 | 1_4:-14668126 | None:intergenic |
| ATGCAAAGATACAATGAAAC+TGG | 0.406646 | 1_4:-14668083 | Msa0152120:CDS |
| CTTTAGATAGACTTGTTGAT+AGG | 0.406743 | 1_4:-14666669 | Msa0152120:CDS |
| TGGCAATATGGGTAATGAAT+TGG | 0.419006 | 1_4:-14667669 | Msa0152120:CDS |
| CTATAACTCCTGCTTCTTCA+AGG | 0.424048 | 1_4:+14667445 | None:intergenic |
| ATATTATTGCAGCATGAATT+GGG | 0.424242 | 1_4:-14667308 | Msa0152120:intron |
| ACTTGTTGTTAGTTCACAAA+AGG | 0.426291 | 1_4:-14667642 | Msa0152120:CDS |
| CAAGACATTGATGGCAATAT+GGG | 0.436846 | 1_4:-14667680 | Msa0152120:CDS |
| AGTTTCATTAGCAAAAGATA+TGG | 0.452059 | 1_4:-14667278 | Msa0152120:CDS |
| AGATATAAGCAAGACATTGA+TGG | 0.458567 | 1_4:-14667689 | Msa0152120:CDS |
| AGTTGTTCCTTGACAAGTAA+GGG | 0.479458 | 1_4:+14667230 | None:intergenic |
| ACTGGTGGTCGTCAAGTTGT+AGG | 0.480361 | 1_4:-14668065 | Msa0152120:CDS |
| CCAGAGATGTTTGTCAGCAT+TGG | 0.482593 | 1_4:-14666705 | Msa0152120:CDS |
| GAGATGTTTGTCAGCATTGG+TGG | 0.494181 | 1_4:-14666702 | Msa0152120:CDS |
| AAGTTGTTCCTTGACAAGTA+AGG | 0.495158 | 1_4:+14667229 | None:intergenic |
| TATAACTCCTGCTTCTTCAA+GGG | 0.500603 | 1_4:+14667446 | None:intergenic |
| CCAATGCTGACAAACATCTC+TGG | 0.500836 | 1_4:+14666705 | None:intergenic |
| AAATCTACGTACAAGAATAT+GGG | 0.505617 | 1_4:-14667189 | Msa0152120:intron |
| CATGTTTCCCTTACTTGTCA+AGG | 0.509328 | 1_4:-14667237 | Msa0152120:CDS |
| CTTGTTGTTAGTTCACAAAA+GGG | 0.509904 | 1_4:-14667641 | Msa0152120:CDS |
| TTGTCAGCATTGGTGGATGA+AGG | 0.547295 | 1_4:-14666695 | Msa0152120:CDS |
| TCAAGGAACAACTTGAACAC+TGG | 0.547860 | 1_4:-14667220 | Msa0152120:CDS |
| CTGGTGGTCGTCAAGTTGTA+GGG | 0.551311 | 1_4:-14668064 | Msa0152120:intron |
| AGAGAATCCCTTGAAGAAGC+AGG | 0.552630 | 1_4:-14667453 | Msa0152120:CDS |
| TGCAGCATGAATTGGGCGAA+TGG | 0.558114 | 1_4:-14667301 | Msa0152120:intron |
| TGTCTTGCTTATATCTGTAT+GGG | 0.559350 | 1_4:+14667696 | None:intergenic |
| GTTTGGTATCTCGTTCTGGA+AGG | 0.561759 | 1_4:-14668109 | Msa0152120:CDS |
| AGATATGGTACATATTATGA+AGG | 0.566362 | 1_4:-14667263 | Msa0152120:CDS |
| TCAATCATTTATGTTTCCAA+AGG | 0.579468 | 1_4:-14667618 | Msa0152120:intron |
| AGGAGTTATAGGAATTGTTG+AGG | 0.587265 | 1_4:-14667433 | Msa0152120:intron |
| CAAAGATACAATGAAACTGG+TGG | 0.647830 | 1_4:-14668080 | Msa0152120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATAAATATTAATGA+AGG | + | chr1_4:14666981-14667000 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | + | chr1_4:14667805-14667824 | None:intergenic | 10.0% |
| !! | TAATGAATAAATATTAATGA+AGG | + | chr1_4:14666981-14667000 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | + | chr1_4:14667805-14667824 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | - | chr1_4:14667238-14667257 | Msa0152120:CDS | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | - | chr1_4:14667239-14667258 | Msa0152120:CDS | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | + | chr1_4:14667900-14667919 | None:intergenic | 15.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | - | chr1_4:14667238-14667257 | Msa0152120:CDS | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | - | chr1_4:14667239-14667258 | Msa0152120:CDS | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | + | chr1_4:14667900-14667919 | None:intergenic | 15.0% |
| !! | TCTAATCAAGATATATCAAA+AGG | + | chr1_4:14666887-14666906 | None:intergenic | 20.0% |
| !! | TTTATTCATTAATTGCTTCT+TGG | - | chr1_4:14666990-14667009 | Msa0152120:intron | 20.0% |
| !! | TTGGACATATTAATAAATGT+TGG | + | chr1_4:14667025-14667044 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | - | chr1_4:14667170-14667189 | Msa0152120:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | - | chr1_4:14667180-14667199 | Msa0152120:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | - | chr1_4:14667337-14667356 | Msa0152120:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | - | chr1_4:14667609-14667628 | Msa0152120:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | - | chr1_4:14667672-14667691 | Msa0152120:CDS | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | + | chr1_4:14667783-14667802 | None:intergenic | 20.0% |
| !! | TCTAATCAAGATATATCAAA+AGG | + | chr1_4:14666887-14666906 | None:intergenic | 20.0% |
| !! | TTTATTCATTAATTGCTTCT+TGG | - | chr1_4:14666990-14667009 | Msa0152120:intron | 20.0% |
| !! | TTGGACATATTAATAAATGT+TGG | + | chr1_4:14667025-14667044 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | - | chr1_4:14667170-14667189 | Msa0152120:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | - | chr1_4:14667180-14667199 | Msa0152120:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | - | chr1_4:14667337-14667356 | Msa0152120:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | - | chr1_4:14667609-14667628 | Msa0152120:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | - | chr1_4:14667672-14667691 | Msa0152120:CDS | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | + | chr1_4:14667783-14667802 | None:intergenic | 20.0% |
| !! | ATATAGTTTTTATCACTGTC+TGG | - | chr1_4:14666761-14666780 | Msa0152120:intron | 25.0% |
| ! | ATCAAGATATATCAAAAGGA+TGG | + | chr1_4:14666883-14666902 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | - | chr1_4:14667031-14667050 | Msa0152120:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | - | chr1_4:14667137-14667156 | Msa0152120:intron | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | - | chr1_4:14667447-14667466 | Msa0152120:CDS | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | - | chr1_4:14667477-14667496 | Msa0152120:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | - | chr1_4:14667492-14667511 | Msa0152120:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | - | chr1_4:14667565-14667584 | Msa0152120:intron | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | - | chr1_4:14667566-14667585 | Msa0152120:intron | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | - | chr1_4:14667925-14667944 | Msa0152120:intron | 25.0% |
| !! | ATATAGTTTTTATCACTGTC+TGG | - | chr1_4:14666761-14666780 | Msa0152120:intron | 25.0% |
| ! | ATCAAGATATATCAAAAGGA+TGG | + | chr1_4:14666883-14666902 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | - | chr1_4:14667031-14667050 | Msa0152120:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | - | chr1_4:14667137-14667156 | Msa0152120:intron | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | - | chr1_4:14667447-14667466 | Msa0152120:CDS | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | - | chr1_4:14667477-14667496 | Msa0152120:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | - | chr1_4:14667492-14667511 | Msa0152120:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | - | chr1_4:14667565-14667584 | Msa0152120:intron | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | - | chr1_4:14667566-14667585 | Msa0152120:intron | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | - | chr1_4:14667925-14667944 | Msa0152120:intron | 25.0% |
| ATGCAAAGATACAATGAAAC+TGG | - | chr1_4:14666672-14666691 | Msa0152120:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | + | chr1_4:14666835-14666854 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | + | chr1_4:14667062-14667081 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | + | chr1_4:14667063-14667082 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | - | chr1_4:14667066-14667085 | Msa0152120:intron | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | - | chr1_4:14667113-14667132 | Msa0152120:intron | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | - | chr1_4:14667114-14667133 | Msa0152120:intron | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | - | chr1_4:14667141-14667160 | Msa0152120:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | - | chr1_4:14667142-14667161 | Msa0152120:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | - | chr1_4:14667242-14667261 | Msa0152120:CDS | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | - | chr1_4:14667446-14667465 | Msa0152120:CDS | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | - | chr1_4:14667646-14667665 | Msa0152120:CDS | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | + | chr1_4:14667705-14667724 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | - | chr1_4:14668086-14668105 | Msa0152120:CDS | 30.0% |
| ATGCAAAGATACAATGAAAC+TGG | - | chr1_4:14666672-14666691 | Msa0152120:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | + | chr1_4:14666835-14666854 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | + | chr1_4:14667062-14667081 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | + | chr1_4:14667063-14667082 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | - | chr1_4:14667066-14667085 | Msa0152120:intron | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | - | chr1_4:14667113-14667132 | Msa0152120:intron | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | - | chr1_4:14667114-14667133 | Msa0152120:intron | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | - | chr1_4:14667141-14667160 | Msa0152120:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | - | chr1_4:14667142-14667161 | Msa0152120:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | - | chr1_4:14667242-14667261 | Msa0152120:CDS | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | - | chr1_4:14667446-14667465 | Msa0152120:CDS | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | - | chr1_4:14667646-14667665 | Msa0152120:CDS | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | + | chr1_4:14667705-14667724 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | - | chr1_4:14668086-14668105 | Msa0152120:CDS | 30.0% |
| CAAAGATACAATGAAACTGG+TGG | - | chr1_4:14666675-14666694 | Msa0152120:CDS | 35.0% | |
| TCAGTCTGATCTTGATCTAA+CGG | + | chr1_4:14666790-14666809 | None:intergenic | 35.0% | |
| ! | CAAGACATTGATGGCAATAT+GGG | - | chr1_4:14667075-14667094 | Msa0152120:intron | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | - | chr1_4:14667086-14667105 | Msa0152120:intron | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | + | chr1_4:14667156-14667175 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | + | chr1_4:14667312-14667331 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | - | chr1_4:14667322-14667341 | Msa0152120:intron | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | + | chr1_4:14667528-14667547 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | + | chr1_4:14667529-14667548 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | + | chr1_4:14667561-14667580 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | - | chr1_4:14668015-14668034 | Msa0152120:intron | 35.0% |
| CAAAGATACAATGAAACTGG+TGG | - | chr1_4:14666675-14666694 | Msa0152120:CDS | 35.0% | |
| TCAGTCTGATCTTGATCTAA+CGG | + | chr1_4:14666790-14666809 | None:intergenic | 35.0% | |
| ! | CAAGACATTGATGGCAATAT+GGG | - | chr1_4:14667075-14667094 | Msa0152120:intron | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | - | chr1_4:14667086-14667105 | Msa0152120:intron | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | + | chr1_4:14667156-14667175 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | + | chr1_4:14667312-14667331 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | - | chr1_4:14667322-14667341 | Msa0152120:intron | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | + | chr1_4:14667528-14667547 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | + | chr1_4:14667529-14667548 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | + | chr1_4:14667561-14667580 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | - | chr1_4:14668015-14668034 | Msa0152120:intron | 35.0% |
| GTTTGTTTGGTATCTCGTTC+TGG | - | chr1_4:14666642-14666661 | Msa0152120:CDS | 40.0% | |
| ATGTCCAAAAGGAACGAAAG+CGG | + | chr1_4:14666824-14666843 | None:intergenic | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | - | chr1_4:14667074-14667093 | Msa0152120:intron | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | - | chr1_4:14667246-14667265 | Msa0152120:CDS | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | - | chr1_4:14667247-14667266 | Msa0152120:CDS | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | + | chr1_4:14667313-14667332 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | - | chr1_4:14667311-14667330 | Msa0152120:intron | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | - | chr1_4:14667518-14667537 | Msa0152120:intron | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | - | chr1_4:14667535-14667554 | Msa0152120:intron | 40.0% | |
| GTTTGTTTGGTATCTCGTTC+TGG | - | chr1_4:14666642-14666661 | Msa0152120:CDS | 40.0% | |
| ATGTCCAAAAGGAACGAAAG+CGG | + | chr1_4:14666824-14666843 | None:intergenic | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | - | chr1_4:14667074-14667093 | Msa0152120:intron | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | - | chr1_4:14667246-14667265 | Msa0152120:CDS | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | - | chr1_4:14667247-14667266 | Msa0152120:CDS | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | + | chr1_4:14667313-14667332 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | - | chr1_4:14667311-14667330 | Msa0152120:intron | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | - | chr1_4:14667518-14667537 | Msa0152120:intron | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | - | chr1_4:14667535-14667554 | Msa0152120:intron | 40.0% | |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | - | chr1_4:14666646-14666665 | Msa0152120:CDS | 45.0% |
| TGTCCAAAAGGAACGAAAGC+GGG | + | chr1_4:14666823-14666842 | None:intergenic | 45.0% | |
| ATGGGATGCACCTACACAAT+TGG | + | chr1_4:14667044-14667063 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | - | chr1_4:14667302-14667321 | Msa0152120:intron | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | + | chr1_4:14668053-14668072 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | - | chr1_4:14668050-14668069 | Msa0152120:intron | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | - | chr1_4:14668053-14668072 | Msa0152120:intron | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | - | chr1_4:14668060-14668079 | Msa0152120:intron | 45.0% |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | - | chr1_4:14666646-14666665 | Msa0152120:CDS | 45.0% |
| TGTCCAAAAGGAACGAAAGC+GGG | + | chr1_4:14666823-14666842 | None:intergenic | 45.0% | |
| ATGGGATGCACCTACACAAT+TGG | + | chr1_4:14667044-14667063 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | - | chr1_4:14667302-14667321 | Msa0152120:intron | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | + | chr1_4:14668053-14668072 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | - | chr1_4:14668050-14668069 | Msa0152120:intron | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | - | chr1_4:14668053-14668072 | Msa0152120:intron | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | - | chr1_4:14668060-14668079 | Msa0152120:intron | 45.0% |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | - | chr1_4:14666690-14666709 | Msa0152120:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | - | chr1_4:14666691-14666710 | Msa0152120:CDS | 50.0% |
| ! | GAACGAAAGCGGGTTCACTT+TGG | + | chr1_4:14666813-14666832 | None:intergenic | 50.0% |
| ! | GAACCCGCTTTCGTTCCTTT+TGG | - | chr1_4:14666817-14666836 | Msa0152120:intron | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | - | chr1_4:14667454-14667473 | Msa0152120:CDS | 50.0% | |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | - | chr1_4:14666690-14666709 | Msa0152120:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | - | chr1_4:14666691-14666710 | Msa0152120:CDS | 50.0% |
| ! | GAACGAAAGCGGGTTCACTT+TGG | + | chr1_4:14666813-14666832 | None:intergenic | 50.0% |
| ! | GAACCCGCTTTCGTTCCTTT+TGG | - | chr1_4:14666817-14666836 | Msa0152120:intron | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | - | chr1_4:14667454-14667473 | Msa0152120:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14666639 | 14668138 | 14666639 | ID=Msa0152120;Name=Msa0152120 |
| chr1_4 | mRNA | 14666639 | 14668138 | 14666639 | ID=Msa0152120-mRNA-1;Parent=Msa0152120;Name=Msa0152120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|165 |
| chr1_4 | exon | 14668065 | 14668138 | 14668065 | ID=Msa0152120-mRNA-1:exon:5754;Parent=Msa0152120-mRNA-1 |
| chr1_4 | exon | 14667619 | 14667724 | 14667619 | ID=Msa0152120-mRNA-1:exon:5753;Parent=Msa0152120-mRNA-1 |
| chr1_4 | exon | 14667434 | 14667517 | 14667434 | ID=Msa0152120-mRNA-1:exon:5752;Parent=Msa0152120-mRNA-1 |
| chr1_4 | exon | 14667190 | 14667318 | 14667190 | ID=Msa0152120-mRNA-1:exon:5751;Parent=Msa0152120-mRNA-1 |
| chr1_4 | exon | 14666639 | 14666743 | 14666639 | ID=Msa0152120-mRNA-1:exon:5750;Parent=Msa0152120-mRNA-1 |
| chr1_4 | CDS | 14668065 | 14668138 | 14668065 | ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1 |
| chr1_4 | CDS | 14667619 | 14667724 | 14667619 | ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1 |
| chr1_4 | CDS | 14667434 | 14667517 | 14667434 | ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1 |
| chr1_4 | CDS | 14667190 | 14667318 | 14667190 | ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1 |
| chr1_4 | CDS | 14666639 | 14666743 | 14666639 | ID=Msa0152120-mRNA-1:cds;Parent=Msa0152120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
