Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061200 | sp|Q9ZU95|NUD17_ARATH | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.74e-79 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061200 | G8A033 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 2.09e-116 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012100 | Msa0061200 | 0.802493 | 5.465938e-49 | -8.615850e-47 |
| Msa0061200 | Msa0105750 | 0.970484 | 1.093688e-131 | -8.615850e-47 |
| Msa0061200 | Msa0152120 | 0.935349 | 9.756533e-97 | -8.615850e-47 |
| Msa0061200 | Msa0358120 | 0.808704 | 2.717022e-50 | -8.615850e-47 |
| Msa0061200 | Msa0472710 | 0.804073 | 2.573136e-49 | -8.615850e-47 |
| Msa0061200 | Msa0472720 | 0.807999 | 3.842089e-50 | -8.615850e-47 |
| Msa0061200 | Msa0615680 | 0.819689 | 1.017793e-52 | -8.615850e-47 |
| Msa0061200 | Msa0659790 | 0.806675 | 7.330353e-50 | -8.615850e-47 |
| Msa0061200 | Msa0748660 | 0.818960 | 1.492217e-52 | -8.615850e-47 |
| Msa0061200 | Msa0776750 | 0.801547 | 8.551239e-49 | -8.615850e-47 |
| Msa0061200 | Msa1114040 | 0.810851 | 9.384862e-51 | -8.615850e-47 |
| Msa0061200 | Msa1266330 | 0.801358 | 9.351912e-49 | -8.615850e-47 |
| Msa0061200 | Msa1421900 | 0.817567 | 3.084037e-52 | -8.615850e-47 |
| Msa0061200 | Msa1462470 | 0.812613 | 3.881216e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061200 | MtrunA17_Chr1g0161131 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.03e-120 | 335 |
| Msa0061200 | MtrunA17_Chr8g0391621 | 81.013 | 158 | 30 | 0 | 1 | 158 | 1 | 158 | 1.85e-95 | 273 |
| Msa0061200 | MtrunA17_Chr3g0110281 | 68.098 | 163 | 49 | 2 | 1 | 161 | 32 | 193 | 3.44e-76 | 226 |
| Msa0061200 | MtrunA17_Chr5g0434521 | 60.479 | 167 | 61 | 3 | 1 | 165 | 10 | 173 | 3.14e-65 | 197 |
| Msa0061200 | MtrunA17_Chr6g0479111 | 59.748 | 159 | 60 | 3 | 1 | 158 | 72 | 227 | 1.81e-63 | 194 |
| Msa0061200 | MtrunA17_Chr8g0353331 | 47.500 | 160 | 76 | 3 | 1 | 153 | 1 | 159 | 4.89e-43 | 140 |
| Msa0061200 | MtrunA17_Chr7g0252391 | 46.875 | 160 | 74 | 4 | 1 | 150 | 1 | 159 | 8.70e-36 | 124 |
| Msa0061200 | MtrunA17_Chr1g0189471 | 46.154 | 65 | 33 | 2 | 1 | 64 | 1 | 64 | 7.24e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061200 | AT2G01670.1 | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.78e-80 | 236 |
| Msa0061200 | AT1G14860.1 | 71.069 | 159 | 45 | 1 | 1 | 159 | 1 | 158 | 4.49e-80 | 235 |
| Msa0061200 | AT1G18300.1 | 54.487 | 156 | 70 | 1 | 1 | 155 | 40 | 195 | 1.44e-61 | 189 |
| Msa0061200 | AT1G73540.1 | 54.777 | 157 | 66 | 2 | 1 | 156 | 41 | 193 | 9.35e-60 | 184 |
| Msa0061200 | AT1G12880.1 | 46.108 | 167 | 76 | 4 | 1 | 154 | 1 | 166 | 9.04e-38 | 128 |
| Msa0061200 | AT3G26690.1 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0061200 | AT3G26690.2 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0061200 | AT3G12600.1 | 48.428 | 159 | 72 | 4 | 1 | 150 | 1 | 158 | 1.16e-34 | 120 |
| Msa0061200 | AT3G12600.2 | 48.299 | 147 | 66 | 4 | 13 | 150 | 4 | 149 | 1.23e-30 | 109 |
Find 37 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTACGTACAAGAATA+TGG | 0.220819 | 1_2:+19201733 | Msa0061200:CDS |
| CATATTATTGCAGCATGAAT+TGG | 0.282486 | 1_2:+19201614 | Msa0061200:intron |
| CTTGAAGAAGCAGGAGTTAT+AGG | 0.288124 | 1_2:+19201480 | Msa0061200:CDS |
| GCAAGACATTGATGGCAATA+TGG | 0.292101 | 1_2:+19201243 | Msa0061200:CDS |
| GTTTGTTTGGTATCTCGTTC+TGG | 0.365455 | 1_2:+19200807 | Msa0061200:CDS |
| ATGTCTTGCTTATATCTGTA+TGG | 0.367359 | 1_2:-19201229 | None:intergenic |
| AAGAGAGAAGATGGTTTGTT+TGG | 0.367598 | 1_2:+19200794 | None:intergenic |
| CTTTAGATAGACTTGTTGAT+AGG | 0.406743 | 1_2:+19202254 | Msa0061200:CDS |
| TGGCAATATGGGTAATGAAT+TGG | 0.419006 | 1_2:+19201255 | Msa0061200:CDS |
| CTATAACTCCTGCTTCTTCA+AGG | 0.424048 | 1_2:-19201479 | None:intergenic |
| ATATTATTGCAGCATGAATT+GGG | 0.424242 | 1_2:+19201615 | Msa0061200:intron |
| ACTTGTTGTTAGTTCACAAA+AGG | 0.426291 | 1_2:+19201282 | Msa0061200:CDS |
| ATGCAAAGATACAATGAAAC+TGG | 0.427691 | 1_2:+19200837 | Msa0061200:CDS |
| CAAGACATTGATGGCAATAT+GGG | 0.436846 | 1_2:+19201244 | Msa0061200:CDS |
| AGTTTCATTAGCAAAAGATA+TGG | 0.452059 | 1_2:+19201645 | Msa0061200:CDS |
| AGATATAAGCAAGACATTGA+TGG | 0.458567 | 1_2:+19201235 | Msa0061200:CDS |
| AGTTGTTCCTTGACAAGTAA+GGG | 0.479458 | 1_2:-19201693 | None:intergenic |
| ACTGGTGGTCGTCAAGTTGT+AGG | 0.480361 | 1_2:+19200855 | Msa0061200:CDS |
| CCAGAGATGTTTGTCAGCAT+TGG | 0.482593 | 1_2:+19202218 | Msa0061200:CDS |
| GAGATGTTTGTCAGCATTGG+TGG | 0.494181 | 1_2:+19202221 | Msa0061200:CDS |
| AAGTTGTTCCTTGACAAGTA+AGG | 0.495158 | 1_2:-19201694 | None:intergenic |
| TATAACTCCTGCTTCTTCAA+GGG | 0.500603 | 1_2:-19201478 | None:intergenic |
| CCAATGCTGACAAACATCTC+TGG | 0.500836 | 1_2:-19202218 | None:intergenic |
| AAATCTACGTACAAGAATAT+GGG | 0.505617 | 1_2:+19201734 | Msa0061200:CDS |
| CATGTTTCCCTTACTTGTCA+AGG | 0.509328 | 1_2:+19201686 | Msa0061200:CDS |
| CTTGTTGTTAGTTCACAAAA+GGG | 0.509904 | 1_2:+19201283 | Msa0061200:CDS |
| TTGTCAGCATTGGTGGATGA+AGG | 0.547295 | 1_2:+19202228 | Msa0061200:CDS |
| TCAAGGAACAACTTGAACAC+TGG | 0.547860 | 1_2:+19201703 | Msa0061200:CDS |
| CTGGTGGTCGTCAAGTTGTA+GGG | 0.551311 | 1_2:+19200856 | Msa0061200:CDS |
| AGAGAATCCCTTGAAGAAGC+AGG | 0.552630 | 1_2:+19201471 | Msa0061200:CDS |
| TGCAGCATGAATTGGGCGAA+TGG | 0.558114 | 1_2:+19201622 | Msa0061200:intron |
| TGTCTTGCTTATATCTGTAT+GGG | 0.559350 | 1_2:-19201228 | None:intergenic |
| AGATATGGTACATATTATGA+AGG | 0.566362 | 1_2:+19201660 | Msa0061200:CDS |
| TCAATCATTTATGTTTCCAA+AGG | 0.579468 | 1_2:+19201306 | Msa0061200:CDS |
| GTTTGGTATCTCGTTCTGGA+AGG | 0.579600 | 1_2:+19200811 | Msa0061200:CDS |
| AGGAGTTATAGGAATTGTTG+AGG | 0.587265 | 1_2:+19201491 | Msa0061200:CDS |
| CAAAGATACAATGAAACTGG+TGG | 0.665224 | 1_2:+19200840 | Msa0061200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATGAATAATAATGA+TGG | - | chr1_2:19201150-19201169 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_2:19201973-19201992 | None:intergenic | 10.0% |
| !! | TAATTAATGAATAATAATGA+TGG | - | chr1_2:19201150-19201169 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_2:19201973-19201992 | None:intergenic | 10.0% |
| !!! | TGCTTAATTTTTTTTAATCT+TGG | + | chr1_2:19201108-19201127 | Msa0061200:intron | 15.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | + | chr1_2:19201407-19201426 | Msa0061200:intron | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | + | chr1_2:19201408-19201427 | Msa0061200:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_2:19202068-19202087 | None:intergenic | 15.0% |
| !!! | TGCTTAATTTTTTTTAATCT+TGG | + | chr1_2:19201108-19201127 | Msa0061200:intron | 15.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | + | chr1_2:19201407-19201426 | Msa0061200:intron | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | + | chr1_2:19201408-19201427 | Msa0061200:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_2:19202068-19202087 | None:intergenic | 15.0% |
| !!! | TATATATAGTTTTATCAGTC+TGG | + | chr1_2:19200923-19200942 | Msa0061200:intron | 20.0% |
| !! | TCTAATCTAGATATATCAAA+AGG | - | chr1_2:19201050-19201069 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | + | chr1_2:19201339-19201358 | Msa0061200:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | + | chr1_2:19201349-19201368 | Msa0061200:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_2:19201506-19201525 | Msa0061200:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_2:19201777-19201796 | Msa0061200:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | + | chr1_2:19201840-19201859 | Msa0061200:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_2:19201951-19201970 | None:intergenic | 20.0% |
| !!! | TATATATAGTTTTATCAGTC+TGG | + | chr1_2:19200923-19200942 | Msa0061200:intron | 20.0% |
| !! | TCTAATCTAGATATATCAAA+AGG | - | chr1_2:19201050-19201069 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | + | chr1_2:19201339-19201358 | Msa0061200:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | + | chr1_2:19201349-19201368 | Msa0061200:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_2:19201506-19201525 | Msa0061200:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_2:19201777-19201796 | Msa0061200:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | + | chr1_2:19201840-19201859 | Msa0061200:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_2:19201951-19201970 | None:intergenic | 20.0% |
| ! | ATCTAGATATATCAAAAGGA+TGG | - | chr1_2:19201046-19201065 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_2:19201200-19201219 | Msa0061200:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_2:19201306-19201325 | Msa0061200:CDS | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_2:19201615-19201634 | Msa0061200:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_2:19201645-19201664 | Msa0061200:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | + | chr1_2:19201660-19201679 | Msa0061200:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | + | chr1_2:19201733-19201752 | Msa0061200:CDS | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | + | chr1_2:19201734-19201753 | Msa0061200:CDS | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_2:19202093-19202112 | Msa0061200:intron | 25.0% |
| ! | ATCTAGATATATCAAAAGGA+TGG | - | chr1_2:19201046-19201065 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_2:19201200-19201219 | Msa0061200:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_2:19201306-19201325 | Msa0061200:CDS | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_2:19201615-19201634 | Msa0061200:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_2:19201645-19201664 | Msa0061200:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | + | chr1_2:19201660-19201679 | Msa0061200:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | + | chr1_2:19201733-19201752 | Msa0061200:CDS | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | + | chr1_2:19201734-19201753 | Msa0061200:CDS | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_2:19202093-19202112 | Msa0061200:intron | 25.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_2:19200837-19200856 | Msa0061200:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_2:19200997-19201016 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_2:19201231-19201250 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_2:19201232-19201251 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_2:19201235-19201254 | Msa0061200:CDS | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | + | chr1_2:19201282-19201301 | Msa0061200:CDS | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | + | chr1_2:19201283-19201302 | Msa0061200:CDS | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_2:19201310-19201329 | Msa0061200:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_2:19201311-19201330 | Msa0061200:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | + | chr1_2:19201411-19201430 | Msa0061200:intron | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | + | chr1_2:19201614-19201633 | Msa0061200:intron | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | + | chr1_2:19201814-19201833 | Msa0061200:intron | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_2:19201873-19201892 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_2:19202254-19202273 | Msa0061200:CDS | 30.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_2:19200837-19200856 | Msa0061200:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_2:19200997-19201016 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_2:19201231-19201250 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_2:19201232-19201251 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_2:19201235-19201254 | Msa0061200:CDS | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | + | chr1_2:19201282-19201301 | Msa0061200:CDS | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | + | chr1_2:19201283-19201302 | Msa0061200:CDS | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_2:19201310-19201329 | Msa0061200:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_2:19201311-19201330 | Msa0061200:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | + | chr1_2:19201411-19201430 | Msa0061200:intron | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | + | chr1_2:19201614-19201633 | Msa0061200:intron | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | + | chr1_2:19201814-19201833 | Msa0061200:intron | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_2:19201873-19201892 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_2:19202254-19202273 | Msa0061200:CDS | 30.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_2:19200840-19200859 | Msa0061200:CDS | 35.0% | |
| TTAGTCTGATCTCGATCTAA+CGG | - | chr1_2:19200952-19200971 | None:intergenic | 35.0% | |
| ! | GAATACGCTTTCTTTCCTTT+TGG | + | chr1_2:19200979-19200998 | Msa0061200:intron | 35.0% |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_2:19201244-19201263 | Msa0061200:CDS | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | + | chr1_2:19201255-19201274 | Msa0061200:CDS | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | - | chr1_2:19201325-19201344 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_2:19201481-19201500 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_2:19201491-19201510 | Msa0061200:CDS | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | - | chr1_2:19201696-19201715 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | - | chr1_2:19201697-19201716 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | - | chr1_2:19201729-19201748 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_2:19202183-19202202 | Msa0061200:intron | 35.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_2:19200840-19200859 | Msa0061200:CDS | 35.0% | |
| TTAGTCTGATCTCGATCTAA+CGG | - | chr1_2:19200952-19200971 | None:intergenic | 35.0% | |
| ! | GAATACGCTTTCTTTCCTTT+TGG | + | chr1_2:19200979-19200998 | Msa0061200:intron | 35.0% |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_2:19201244-19201263 | Msa0061200:CDS | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | + | chr1_2:19201255-19201274 | Msa0061200:CDS | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | - | chr1_2:19201325-19201344 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_2:19201481-19201500 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_2:19201491-19201510 | Msa0061200:CDS | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | - | chr1_2:19201696-19201715 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | - | chr1_2:19201697-19201716 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | - | chr1_2:19201729-19201748 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_2:19202183-19202202 | Msa0061200:intron | 35.0% |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_2:19200807-19200826 | Msa0061200:CDS | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_2:19201243-19201262 | Msa0061200:CDS | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | + | chr1_2:19201415-19201434 | Msa0061200:intron | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | + | chr1_2:19201416-19201435 | Msa0061200:intron | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_2:19201482-19201501 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_2:19201480-19201499 | Msa0061200:CDS | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | + | chr1_2:19201686-19201705 | Msa0061200:CDS | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | + | chr1_2:19201703-19201722 | Msa0061200:CDS | 40.0% | |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_2:19200807-19200826 | Msa0061200:CDS | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_2:19201243-19201262 | Msa0061200:CDS | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | + | chr1_2:19201415-19201434 | Msa0061200:intron | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | + | chr1_2:19201416-19201435 | Msa0061200:intron | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_2:19201482-19201501 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_2:19201480-19201499 | Msa0061200:CDS | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | + | chr1_2:19201686-19201705 | Msa0061200:CDS | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | + | chr1_2:19201703-19201722 | Msa0061200:CDS | 40.0% | |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_2:19200811-19200830 | Msa0061200:CDS | 45.0% |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_2:19201213-19201232 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_2:19201471-19201490 | Msa0061200:CDS | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_2:19202221-19202240 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_2:19202218-19202237 | Msa0061200:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_2:19202221-19202240 | Msa0061200:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_2:19202228-19202247 | Msa0061200:CDS | 45.0% |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_2:19200811-19200830 | Msa0061200:CDS | 45.0% |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_2:19201213-19201232 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_2:19201471-19201490 | Msa0061200:CDS | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_2:19202221-19202240 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_2:19202218-19202237 | Msa0061200:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_2:19202221-19202240 | Msa0061200:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_2:19202228-19202247 | Msa0061200:CDS | 45.0% |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_2:19200855-19200874 | Msa0061200:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_2:19200856-19200875 | Msa0061200:CDS | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | + | chr1_2:19201622-19201641 | Msa0061200:intron | 50.0% | |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_2:19200855-19200874 | Msa0061200:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_2:19200856-19200875 | Msa0061200:CDS | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | + | chr1_2:19201622-19201641 | Msa0061200:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 19200804 | 19202306 | 19200804 | ID=Msa0061200;Name=Msa0061200 |
| chr1_2 | mRNA | 19200804 | 19202306 | 19200804 | ID=Msa0061200-mRNA-1;Parent=Msa0061200;Name=Msa0061200-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|165 |
| chr1_2 | exon | 19200804 | 19200877 | 19200804 | ID=Msa0061200-mRNA-1:exon:7450;Parent=Msa0061200-mRNA-1 |
| chr1_2 | exon | 19201222 | 19201327 | 19201222 | ID=Msa0061200-mRNA-1:exon:7451;Parent=Msa0061200-mRNA-1 |
| chr1_2 | exon | 19201429 | 19201512 | 19201429 | ID=Msa0061200-mRNA-1:exon:7452;Parent=Msa0061200-mRNA-1 |
| chr1_2 | exon | 19201627 | 19201755 | 19201627 | ID=Msa0061200-mRNA-1:exon:7453;Parent=Msa0061200-mRNA-1 |
| chr1_2 | exon | 19202202 | 19202306 | 19202202 | ID=Msa0061200-mRNA-1:exon:7454;Parent=Msa0061200-mRNA-1 |
| chr1_2 | CDS | 19200804 | 19200877 | 19200804 | ID=Msa0061200-mRNA-1:cds;Parent=Msa0061200-mRNA-1 |
| chr1_2 | CDS | 19201222 | 19201327 | 19201222 | ID=Msa0061200-mRNA-1:cds;Parent=Msa0061200-mRNA-1 |
| chr1_2 | CDS | 19201429 | 19201512 | 19201429 | ID=Msa0061200-mRNA-1:cds;Parent=Msa0061200-mRNA-1 |
| chr1_2 | CDS | 19201627 | 19201755 | 19201627 | ID=Msa0061200-mRNA-1:cds;Parent=Msa0061200-mRNA-1 |
| chr1_2 | CDS | 19202202 | 19202306 | 19202202 | ID=Msa0061200-mRNA-1:cds;Parent=Msa0061200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
