AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1199290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199290 MtrunA17_Chr8g0364621 99.242 132 1 0 1 132 1 132 1.01e-94 272
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199290 AT1G24050.1 48.819 127 63 1 8 132 9 135 8.02e-38 128
Msa1199290 AT1G70220.2 36.975 119 68 3 16 132 18 131 5.09e-20 82.4

Find 46 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAATGCTCTTCAATCT+AGG 0.278261 8_1:+51268851 Msa1199290:CDS
TGTAAGATATTTATACTTGT+AGG 0.320150 8_1:-51276237 None:intergenic
AAGCAGATGCTGAGAGGATT+GGG 0.337218 8_1:+51269448 Msa1199290:CDS
CTAGGGAAGAACTTGCAATT+AGG 0.346293 8_1:+51268869 Msa1199290:CDS
GTCTTGACCTTGACCTAAAA+AGG 0.356451 8_1:-51268800 None:intergenic
ATGGTCCTCGTCGAAATATT+AGG 0.388314 8_1:+51268746 Msa1199290:CDS
ATATCAAGAAGACAGTGATT+TGG 0.395149 8_1:-51268832 None:intergenic
ATTTCGACGAGGACCATGTT+TGG 0.400312 8_1:-51268740 None:intergenic
TGGGTTGTTTCCTTTCGATC+AGG 0.445262 8_1:+51268638 Msa1199290:CDS
CTTTCGATCAGGACAACGTT+AGG 0.448519 8_1:+51268649 Msa1199290:CDS
GAAGCAGATGCTGAGAGGAT+TGG 0.459586 8_1:+51269447 Msa1199290:CDS
TTGTTACTTCTGCTGTGTTG+TGG 0.470591 8_1:-51268535 None:intergenic
TTCAGCCATACGTGGTGGAC+TGG 0.480219 8_1:+51276206 Msa1199290:CDS
GTGGCAGAGGACGTCGGCAG+AGG 0.510792 8_1:+51276264 Msa1199290:CDS
AAGTATAAATATCTTACAAA+AGG 0.514388 8_1:+51276242 Msa1199290:CDS
TATTAATGCTCTTCAATCTA+GGG 0.522635 8_1:+51268852 Msa1199290:CDS
TATAAATATCTTACAAAAGG+TGG 0.522928 8_1:+51276245 Msa1199290:CDS
CACCACCAGTCCACCACGTA+TGG 0.529284 8_1:-51276211 None:intergenic
TTCTTGAAGTACGAGGTAGT+TGG 0.533051 8_1:-51268713 None:intergenic
CAGTCAAAACAAACAAAAGA+TGG 0.540414 8_1:+51268561 Msa1199290:exon
CTTCAAGAAGGTTCCAAACA+TGG 0.547671 8_1:+51268727 Msa1199290:CDS
ACGTTAGGTGATGAATTTGA+AGG 0.547826 8_1:+51268664 Msa1199290:CDS
AGACAGTGATTTGGATCAAG+TGG 0.549220 8_1:-51268823 None:intergenic
TCGGCAGAGGACGTCGGCAG+AGG 0.549716 8_1:+51276277 Msa1199290:CDS
TATCTTACAAAAGGTGGCAG+AGG 0.552434 8_1:+51276251 Msa1199290:CDS
GGACGTCGGCAGAGGACGTA+AGG 0.563005 8_1:+51276285 Msa1199290:CDS
CAACAACGGAGATGAGTTTG+CGG 0.565519 8_1:+51268615 Msa1199290:CDS
ATGGCGATGACGATGGAAAG+TGG 0.583221 8_1:+51268580 Msa1199290:CDS
AACTACCTCGTACTTCAAGA+AGG 0.584328 8_1:+51268715 Msa1199290:CDS
CTAACGTTGTCCTGATCGAA+AGG 0.584661 8_1:-51268648 None:intergenic
AACGGAGATGAGTTTGCGGT+GGG 0.594074 8_1:+51268619 Msa1199290:CDS
CAACGGAGATGAGTTTGCGG+TGG 0.594238 8_1:+51268618 Msa1199290:CDS
CATACGTGGTGGACTGGTGG+TGG 0.597383 8_1:+51276212 Msa1199290:CDS
ACAAAAGATGGCGATGACGA+TGG 0.605340 8_1:+51268573 Msa1199290:exon
GGCAATTCAGCCATACGTGG+TGG 0.610721 8_1:+51276201 Msa1199290:CDS
GACAGTGATTTGGATCAAGT+GGG 0.628707 8_1:-51268822 None:intergenic
CAAAAGGTGGCAGAGGACGT+CGG 0.632140 8_1:+51276258 Msa1199290:CDS
GGCAGCAGCAACAACAACAA+CGG 0.651119 8_1:+51268601 Msa1199290:CDS
AAGCTGAAGCAGATGCTGAG+AGG 0.660269 8_1:+51269442 Msa1199290:CDS
AGGACGTCGGCAGAGGACGT+CGG 0.662720 8_1:+51276271 Msa1199290:CDS
AGCCATACGTGGTGGACTGG+TGG 0.666158 8_1:+51276209 Msa1199290:CDS
AGCAGATGCTGAGAGGATTG+GGG 0.676816 8_1:+51269449 Msa1199290:CDS
GATGCTGAGAGGATTGGGGT+TGG 0.677325 8_1:+51269453 Msa1199290:CDS
TGGAACCTTCTTGAAGTACG+AGG 0.696402 8_1:-51268720 None:intergenic
TTAGGCAATTCAGCCATACG+TGG 0.706229 8_1:+51276198 Msa1199290:CDS
AAAAGCCTAATATTTCGACG+AGG 0.729946 8_1:-51268751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTTTATTTATTTTT+TGG - chr8_1:51271684-51271703 None:intergenic 0.0%
!! TAAAAATAAAATTAAAAAAT+TGG + chr8_1:51274021-51274040 Msa1199290:intron 0.0%
!!! CAATTTTAAATTTTTATTGA+TGG + chr8_1:51268937-51268956 Msa1199290:intron 10.0%
!!! GTTATTAAATAGAAATTTTT+TGG + chr8_1:51269691-51269710 Msa1199290:intron 10.0%
!!! ATTTTAATTTTTGGTTAATT+TGG + chr8_1:51270618-51270637 Msa1199290:intron 10.0%
!!! ACAATAAAATAAAGAATTTT+CGG - chr8_1:51270681-51270700 None:intergenic 10.0%
!!! GTTATTAAATAGAATATTTT+TGG + chr8_1:51270893-51270912 Msa1199290:intron 10.0%
!! TATTTAAAAAACTTTATATG+GGG + chr8_1:51272309-51272328 Msa1199290:intron 10.0%
!! AATTATTTGTCAAATTAATA+AGG - chr8_1:51272673-51272692 None:intergenic 10.0%
!!! CTAAAGAATTTTTTTATATA+TGG - chr8_1:51273297-51273316 None:intergenic 10.0%
!! ATAAATTGTAAATATATCTT+CGG + chr8_1:51273401-51273420 Msa1199290:intron 10.0%
!! TTAATAAGTTATTATTAGAT+GGG - chr8_1:51273963-51273982 None:intergenic 10.0%
!! TTTAATAAGTTATTATTAGA+TGG - chr8_1:51273964-51273983 None:intergenic 10.0%
!!! TTTAATAATATTTTTCTTTG+AGG - chr8_1:51275156-51275175 None:intergenic 10.0%
!!! AACTTACTATATTTTATATT+TGG + chr8_1:51276103-51276122 Msa1199290:intron 10.0%
!!! ATGATTATTTTGTTTAGATT+TGG + chr8_1:51269070-51269089 Msa1199290:intron 15.0%
!!! ATTTAAAGTGATTTTTGTTT+TGG + chr8_1:51269409-51269428 Msa1199290:intron 15.0%
!!! TTTAAAGTGATTTTTGTTTT+GGG + chr8_1:51269410-51269429 Msa1199290:intron 15.0%
!! TAGATATTAAAAGATGAAAT+GGG - chr8_1:51269726-51269745 None:intergenic 15.0%
!! ATAGATATTAAAAGATGAAA+TGG - chr8_1:51269727-51269746 None:intergenic 15.0%
!! AATAAAAAATTGTCACATAA+CGG - chr8_1:51270365-51270384 None:intergenic 15.0%
!!! TTGTTGAACATTTTATTTTA+TGG + chr8_1:51270565-51270584 Msa1199290:intron 15.0%
!!! GTTAAGTGAATTTTAATTTT+TGG + chr8_1:51270609-51270628 Msa1199290:intron 15.0%
!! TAGTTTCTAACTTAAATAAT+AGG + chr8_1:51270721-51270740 Msa1199290:intron 15.0%
!!! TTTTTATCTAAAACAAGTTT+TGG + chr8_1:51270761-51270780 Msa1199290:intron 15.0%
!! CTACATATAAAAATAACAAA+GGG + chr8_1:51271776-51271795 Msa1199290:intron 15.0%
!! TTAAGCTATATATTTCATTA+AGG - chr8_1:51272194-51272213 None:intergenic 15.0%
!! GTTTATTTGAAAATGTTAAT+TGG + chr8_1:51272271-51272290 Msa1199290:intron 15.0%
!! TAACATAACTATTTACTAAA+AGG - chr8_1:51272415-51272434 None:intergenic 15.0%
!!! TTATGTTAAATTGTGTTTTA+AGG + chr8_1:51272427-51272446 Msa1199290:intron 15.0%
!!! TATGTTAAATTGTGTTTTAA+GGG + chr8_1:51272428-51272447 Msa1199290:intron 15.0%
!! AAACAACAATTATTTATGAA+AGG - chr8_1:51272554-51272573 None:intergenic 15.0%
!!! TCAAGATACATATATTTTTT+AGG + chr8_1:51272704-51272723 Msa1199290:intron 15.0%
!! GTCAAAAAATTGTTATAAAA+TGG - chr8_1:51272750-51272769 None:intergenic 15.0%
!!! AACAAAGCATTATTTTTATT+AGG + chr8_1:51273231-51273250 Msa1199290:intron 15.0%
!! TAAATTGTAAATATATCTTC+GGG + chr8_1:51273402-51273421 Msa1199290:intron 15.0%
!! AAAAAAAATTTCACAAAACA+AGG + chr8_1:51273467-51273486 Msa1199290:intron 15.0%
!!! TTATATTCTAAAAATGGAAA+AGG - chr8_1:51273845-51273864 None:intergenic 15.0%
!!! AGGATATATTTAATTTAAGT+TGG + chr8_1:51273914-51273933 Msa1199290:intron 15.0%
!! ATAACTTATTAAATATTCCA+CGG + chr8_1:51273971-51273990 Msa1199290:intron 15.0%
!! AAAAATTGGTATGATAAAAA+AGG + chr8_1:51274035-51274054 Msa1199290:intron 15.0%
!! AAAATTGGTATGATAAAAAA+GGG + chr8_1:51274036-51274055 Msa1199290:intron 15.0%
!!! TAAATATGAGTGATTTTTTA+AGG - chr8_1:51274526-51274545 None:intergenic 15.0%
!!! TTCTAGAATTAATTGATTTT+TGG - chr8_1:51274706-51274725 None:intergenic 15.0%
!! ATATTATTAAAAATTGCGAT+AGG + chr8_1:51275165-51275184 Msa1199290:intron 15.0%
!! TATTATTAAAAATTGCGATA+GGG + chr8_1:51275166-51275185 Msa1199290:intron 15.0%
!! AGATAGAAAATTCAAATTTA+AGG - chr8_1:51275304-51275323 None:intergenic 15.0%
!!! AAATTTGAATTTTCTATCTT+TGG + chr8_1:51275305-51275324 Msa1199290:intron 15.0%
!!! GGTTTTTTAAAATTGATTTT+TGG - chr8_1:51275428-51275447 None:intergenic 15.0%
!!! GAAATTGATTTTAATTTAGA+TGG - chr8_1:51275449-51275468 None:intergenic 15.0%
!! TATATATACTGATAAAATCT+TGG + chr8_1:51275778-51275797 Msa1199290:intron 15.0%
!! ATATATACTGATAAAATCTT+GGG + chr8_1:51275779-51275798 Msa1199290:intron 15.0%
!! AAGTATAAATATCTTACAAA+AGG + chr8_1:51276242-51276261 Msa1199290:CDS 15.0%
!! AAAAAGAAAAACATAGGATT+CGG - chr8_1:51269367-51269386 None:intergenic 20.0%
!! CATTGAAAAAAGAAAAACAT+AGG - chr8_1:51269373-51269392 None:intergenic 20.0%
!! TATCTACTAACTCATAAAAA+TGG + chr8_1:51269625-51269644 Msa1199290:intron 20.0%
!!! TTTTACTAAATAGAGTATCT+TGG - chr8_1:51269816-51269835 None:intergenic 20.0%
!! TAAAAAATGTTGTCTAATTG+CGG + chr8_1:51269831-51269850 Msa1199290:intron 20.0%
!! AGAAAGTAAATTAGGAAAAA+GGG - chr8_1:51270036-51270055 None:intergenic 20.0%
!!! TATCAAGTTTTATGGTAAAA+AGG - chr8_1:51270144-51270163 None:intergenic 20.0%
!! TTAAAATTCACTTAACTCTA+GGG - chr8_1:51270605-51270624 None:intergenic 20.0%
!! ATTAAAATTCACTTAACTCT+AGG - chr8_1:51270606-51270625 None:intergenic 20.0%
!!! AAAATAAAGAATTTTCGGTA+CGG - chr8_1:51270676-51270695 None:intergenic 20.0%
!! TAAATAAAAGGAAGTAAACT+AGG - chr8_1:51271219-51271238 None:intergenic 20.0%
!!! AGTTTACTTCCTTTTATTTA+AGG + chr8_1:51271219-51271238 Msa1199290:intron 20.0%
!!! ATTTTTATATGTAGCATGTT+AGG - chr8_1:51271770-51271789 None:intergenic 20.0%
!! GCTACATATAAAAATAACAA+AGG + chr8_1:51271775-51271794 Msa1199290:intron 20.0%
!! GGTCTAAATTAATATATGTA+TGG + chr8_1:51271834-51271853 Msa1199290:intron 20.0%
!! CAATTATTTATGAAAGGAAA+AGG - chr8_1:51272548-51272567 None:intergenic 20.0%
!! GTTTCATAATGTTTATATGT+AGG + chr8_1:51273011-51273030 Msa1199290:intron 20.0%
!! AGTTTAATAACCTTACATTT+AGG - chr8_1:51273194-51273213 None:intergenic 20.0%
!! AATCAAAGTTCTTATTATAC+AGG + chr8_1:51273706-51273725 Msa1199290:intron 20.0%
!!! GTCAAGTTATATTCTAAAAA+TGG - chr8_1:51273851-51273870 None:intergenic 20.0%
!! AAGTAGTTTAAAAAAAGTGA+AGG + chr8_1:51274106-51274125 Msa1199290:intron 20.0%
!!! TAGTTATTTCGTATATAGTT+AGG - chr8_1:51274229-51274248 None:intergenic 20.0%
!! TACATAATATATTCATGGAT+TGG + chr8_1:51274295-51274314 Msa1199290:intron 20.0%
!! CAATATCAATAATGAAAATC+TGG + chr8_1:51274443-51274462 Msa1199290:intron 20.0%
!!! ATTCTAGAAAACATTATGAT+TGG + chr8_1:51274717-51274736 Msa1199290:intron 20.0%
!!! TTTTGTATTAGATTTGATTG+TGG + chr8_1:51275330-51275349 Msa1199290:intron 20.0%
!!! TTTAGTTTAAAATGTGCTTA+AGG - chr8_1:51275387-51275406 None:intergenic 20.0%
!!! TGTTTTTATTTTTAGGGTAA+CGG - chr8_1:51275471-51275490 None:intergenic 20.0%
!!! TTACTATAGTCGAATATTTT+TGG - chr8_1:51275672-51275691 None:intergenic 20.0%
!! TATAAATGATTTCTCAGATT+TGG + chr8_1:51275819-51275838 Msa1199290:intron 20.0%
!!! AAACTTGAGAAAATTTTCAA+TGG - chr8_1:51275963-51275982 None:intergenic 20.0%
!! AGAGAAATTATAAAGAAAAG+TGG - chr8_1:51275911-51275930 None:intergenic 20.0%
!! TGTAAGATATTTATACTTGT+AGG - chr8_1:51276240-51276259 None:intergenic 20.0%
!! TATAAATATCTTACAAAAGG+TGG + chr8_1:51276245-51276264 Msa1199290:CDS 20.0%
!! ATCAAAGATTTCACCTTTTT+AGG + chr8_1:51268787-51268806 Msa1199290:CDS 25.0%
! ATATTAATGCTCTTCAATCT+AGG + chr8_1:51268851-51268870 Msa1199290:CDS 25.0%
! TATTAATGCTCTTCAATCTA+GGG + chr8_1:51268852-51268871 Msa1199290:CDS 25.0%
!! TAGTTCAACTAGTTTGATTA+AGG + chr8_1:51268966-51268985 Msa1199290:intron 25.0%
! TTGATTAAGGAATAAAGAGA+TGG + chr8_1:51268979-51268998 Msa1199290:intron 25.0%
! GATAAGAGAGAAAACAATAT+AGG + chr8_1:51269301-51269320 Msa1199290:intron 25.0%
! GAAAGTAAATTAGGAAAAAG+GGG - chr8_1:51270035-51270054 None:intergenic 25.0%
! CAGAAAGTAAATTAGGAAAA+AGG - chr8_1:51270037-51270056 None:intergenic 25.0%
!! CTTTTTCCTAATTTACTTTC+TGG + chr8_1:51270035-51270054 Msa1199290:intron 25.0%
!!! ACTTTAGGGATTTCATTTTA+GGG + chr8_1:51270076-51270095 Msa1199290:intron 25.0%
! ATAAAACTTGATACACACTT+GGG + chr8_1:51270151-51270170 Msa1199290:intron 25.0%
! AATATGTCCAAACAAAATGT+GGG + chr8_1:51270238-51270257 Msa1199290:intron 25.0%
!!! TAGTGTTGGTTATCATAATA+TGG + chr8_1:51270504-51270523 Msa1199290:intron 25.0%
! ACAAAAAACCTACAAAACAA+AGG - chr8_1:51270549-51270568 None:intergenic 25.0%
!! AAATGCCTTTAAAAGTTTAC+CGG + chr8_1:51270801-51270820 Msa1199290:intron 25.0%
!!! AGTGTTTTTGAGAATAGTTT+AGG + chr8_1:51270848-51270867 Msa1199290:intron 25.0%
!!! GTGTTTTTGAGAATAGTTTA+GGG + chr8_1:51270849-51270868 Msa1199290:intron 25.0%
! TAAAAGACGAATTGATTGTA+TGG - chr8_1:51270927-51270946 None:intergenic 25.0%
!! GTACTATAAATAGAGTATCA+CGG - chr8_1:51271024-51271043 None:intergenic 25.0%
!!! TGTAGAGCTTTCATTTTTAA+GGG + chr8_1:51271246-51271265 Msa1199290:intron 25.0%
! TATCAATTGAGTAATGTGAA+GGG + chr8_1:51271394-51271413 Msa1199290:intron 25.0%
!!! ATTTTTTATTATGCAGCCTA+AGG - chr8_1:51271638-51271657 None:intergenic 25.0%
! TAACAAAGGGCTTATAAAAA+AGG + chr8_1:51271789-51271808 Msa1199290:intron 25.0%
! AACAAAGGGCTTATAAAAAA+GGG + chr8_1:51271790-51271809 Msa1199290:intron 25.0%
!! TGTAGGTAATAATTAACTTG+TGG + chr8_1:51271813-51271832 Msa1199290:intron 25.0%
! TGTATGAGTTATTATGATTG+TGG + chr8_1:51271990-51272009 Msa1199290:intron 25.0%
! TAATTTCATGTGTCACATAA+AGG + chr8_1:51272092-51272111 Msa1199290:intron 25.0%
!!! GGACTTGTCTTTTTTTTTTT+TGG - chr8_1:51272652-51272671 None:intergenic 25.0%
! TTCTAATTGGCCAAAAATAA+TGG + chr8_1:51272784-51272803 Msa1199290:intron 25.0%
!!! CTTGAATTGAAAACTTGTTA+AGG + chr8_1:51272978-51272997 Msa1199290:intron 25.0%
!!! ATTGAAAACTTGTTAAGGTT+AGG + chr8_1:51272983-51273002 Msa1199290:intron 25.0%
!!! GGTTATTAAACTCTTGTTTT+AGG + chr8_1:51273202-51273221 Msa1199290:intron 25.0%
!!! GCACAATAAATTTAGTTTGT+AGG - chr8_1:51273352-51273371 None:intergenic 25.0%
!! TTTTGAATCCGTTATAGATA+AGG - chr8_1:51273378-51273397 None:intergenic 25.0%
!! ATGGAAAGTCAAAGATATTT+TGG + chr8_1:51273430-51273449 Msa1199290:intron 25.0%
! ACTACATGTAAATACTTAAC+TGG - chr8_1:51273583-51273602 None:intergenic 25.0%
! TTAGAATATAACTTGACAGT+AGG + chr8_1:51273854-51273873 Msa1199290:intron 25.0%
!!! TGTGTCTCACAATTTTTTAA+GGG - chr8_1:51274149-51274168 None:intergenic 25.0%
!!! TTGTGTCTCACAATTTTTTA+AGG - chr8_1:51274150-51274169 None:intergenic 25.0%
! GGGATTACATAATATATTCA+TGG + chr8_1:51274290-51274309 Msa1199290:intron 25.0%
!! AAGTTCACACATTTTAAATG+TGG - chr8_1:51274348-51274367 None:intergenic 25.0%
!!! AATTATTTTTGGTCAAGTAG+CGG - chr8_1:51274374-51274393 None:intergenic 25.0%
!! TTAAAGACCCTTTCTTTTAT+AGG - chr8_1:51274470-51274489 None:intergenic 25.0%
!! TTTTCCTTTTCATCTTCTTT+TGG + chr8_1:51274831-51274850 Msa1199290:intron 25.0%
! TATACCAAAAGAAGATGAAA+AGG - chr8_1:51274838-51274857 None:intergenic 25.0%
! AATCAATGAAGAACAAATGT+TGG + chr8_1:51275076-51275095 Msa1199290:intron 25.0%
!!! CGTGTGTGTTTTTATTTTTA+GGG - chr8_1:51275477-51275496 None:intergenic 25.0%
!!! TCGTGTGTGTTTTTATTTTT+AGG - chr8_1:51275478-51275497 None:intergenic 25.0%
! GCATAGTATTTAAATAAGAG+TGG - chr8_1:51275758-51275777 None:intergenic 25.0%
!! TTAATGGTGGAGATTAAAAA+TGG - chr8_1:51275878-51275897 None:intergenic 25.0%
! TATAAAGAAAAGTGGTTAGT+GGG - chr8_1:51275903-51275922 None:intergenic 25.0%
! TTATAAAGAAAAGTGGTTAG+TGG - chr8_1:51275904-51275923 None:intergenic 25.0%
! AATTTCTCTCTCATATTTGA+TGG + chr8_1:51275922-51275941 Msa1199290:intron 25.0%
! AATTCAACTTGTAAATTGTC+AGG - chr8_1:51276069-51276088 None:intergenic 25.0%
! CTTATGTTTAATAACAGCTT+AGG + chr8_1:51276180-51276199 Msa1199290:intron 25.0%
CAGTCAAAACAAACAAAAGA+TGG + chr8_1:51268561-51268580 Msa1199290:exon 30.0%
ATATCAAGAAGACAGTGATT+TGG - chr8_1:51268835-51268854 None:intergenic 30.0%
ATTAAGGAATAAAGAGATGG+AGG + chr8_1:51268982-51269001 Msa1199290:intron 30.0%
!!! ATAGTTTTGTTCTTTTCGTC+CGG - chr8_1:51269022-51269041 None:intergenic 30.0%
ATTGTTAAAGAGTCCCATAT+TGG + chr8_1:51269093-51269112 Msa1199290:intron 30.0%
CTGAACTTGTGTTTATAAGT+GGG + chr8_1:51269128-51269147 Msa1199290:intron 30.0%
TGAACTTGTGTTTATAAGTG+GGG + chr8_1:51269129-51269148 Msa1199290:intron 30.0%
CTAATACAATCCCACAAAAT+CGG - chr8_1:51269173-51269192 None:intergenic 30.0%
AACAAATCACAATGAATCTG+TGG - chr8_1:51269337-51269356 None:intergenic 30.0%
ATCTTATTGTGATATAACCC+TGG + chr8_1:51269592-51269611 Msa1199290:intron 30.0%
GTAGATACTAATCTAATCCA+GGG - chr8_1:51269612-51269631 None:intergenic 30.0%
AGTAGATACTAATCTAATCC+AGG - chr8_1:51269613-51269632 None:intergenic 30.0%
GCTAGAAGTTTAGAGATTTA+TGG + chr8_1:51269647-51269666 Msa1199290:intron 30.0%
AGAACAATGTTGTCAAATTG+CGG + chr8_1:51269748-51269767 Msa1199290:intron 30.0%
! TACTAAATAGAGTATCTTGG+CGG - chr8_1:51269813-51269832 None:intergenic 30.0%
! TTTCTGGCATGCATTATTTA+GGG + chr8_1:51270051-51270070 Msa1199290:intron 30.0%
! CATTATTTAGGGTGACTTTA+GGG + chr8_1:51270062-51270081 Msa1199290:intron 30.0%
!! GACTTTAGGGATTTCATTTT+AGG + chr8_1:51270075-51270094 Msa1199290:intron 30.0%
!! CTTTAGGGATTTCATTTTAG+GGG + chr8_1:51270077-51270096 Msa1199290:intron 30.0%
! CAAGTGTGTATCAAGTTTTA+TGG - chr8_1:51270152-51270171 None:intergenic 30.0%
CATAAAACTTGATACACACT+TGG + chr8_1:51270150-51270169 Msa1199290:intron 30.0%
AGTTATGTTAGATGTCCTAA+TGG + chr8_1:51270177-51270196 Msa1199290:intron 30.0%
TTCACATTATTCAGTCGATA+CGG - chr8_1:51270220-51270239 None:intergenic 30.0%
GAATATGTCCAAACAAAATG+TGG + chr8_1:51270237-51270256 Msa1199290:intron 30.0%
ATATGTCCAAACAAAATGTG+GGG + chr8_1:51270239-51270258 Msa1199290:intron 30.0%
TAATATGGATGCTAGAAAAC+TGG + chr8_1:51270519-51270538 Msa1199290:intron 30.0%
!! TTTTGGTTAATTTGGCTGTA+TGG + chr8_1:51270626-51270645 Msa1199290:intron 30.0%
! TTTGGTTAATTTGGCTGTAT+GGG + chr8_1:51270627-51270646 Msa1199290:intron 30.0%
TTAGAAACTAATCCAATCTG+GGG - chr8_1:51270711-51270730 None:intergenic 30.0%
GTTAGAAACTAATCCAATCT+GGG - chr8_1:51270712-51270731 None:intergenic 30.0%
AGTTAGAAACTAATCCAATC+TGG - chr8_1:51270713-51270732 None:intergenic 30.0%
! AATGCCTTTAAAAGTTTACC+GGG + chr8_1:51270802-51270821 Msa1199290:intron 30.0%
! GTACAAAGTGTTAACAATAG+CGG + chr8_1:51271040-51271059 Msa1199290:intron 30.0%
AGGAAGTAAACTAGGAATAA+GGG - chr8_1:51271211-51271230 None:intergenic 30.0%
AAGGAAGTAAACTAGGAATA+AGG - chr8_1:51271212-51271231 None:intergenic 30.0%
CTACAGTCACCTTAAATAAA+AGG - chr8_1:51271231-51271250 None:intergenic 30.0%
!! CTGTAGAGCTTTCATTTTTA+AGG + chr8_1:51271245-51271264 Msa1199290:intron 30.0%
ACATTACTCAATTGATACAG+TGG - chr8_1:51271391-51271410 None:intergenic 30.0%
GTATCAATTGAGTAATGTGA+AGG + chr8_1:51271393-51271412 Msa1199290:intron 30.0%
!!! GGTTTACCTCATTTTGTTTT+TGG + chr8_1:51271855-51271874 Msa1199290:intron 30.0%
TTAACTCTTGTCGTGAAATA+AGG + chr8_1:51272047-51272066 Msa1199290:intron 30.0%
!! TGAAATAAGGAAAAGCATTG+AGG + chr8_1:51272060-51272079 Msa1199290:intron 30.0%
!! AAAGGTACTATTGTTAGTTG+TGG + chr8_1:51272110-51272129 Msa1199290:intron 30.0%
! AAGGTACTATTGTTAGTTGT+GGG + chr8_1:51272111-51272130 Msa1199290:intron 30.0%
ACTTAGTTTATGTTGAAAGC+AGG + chr8_1:51272158-51272177 Msa1199290:intron 30.0%
!!! TGGACATGATTTTTTGGTAA+AGG + chr8_1:51272243-51272262 Msa1199290:intron 30.0%
ATCTTCTTCTCTCTTCTAAT+TGG + chr8_1:51272771-51272790 Msa1199290:intron 30.0%
!! TAACGTGATTTACTTTTGTC+TGG - chr8_1:51273531-51273550 None:intergenic 30.0%
AATACTTAACTGGTAGTCTA+TGG - chr8_1:51273573-51273592 None:intergenic 30.0%
CAAAATCTATTTAATGCGTG+GGG - chr8_1:51273779-51273798 None:intergenic 30.0%
GCAAAATCTATTTAATGCGT+GGG - chr8_1:51273780-51273799 None:intergenic 30.0%
CAACACGATTTAAAAGGATA+AGG - chr8_1:51273802-51273821 None:intergenic 30.0%
AACACTCAACACGATTTAAA+AGG - chr8_1:51273808-51273827 None:intergenic 30.0%
!!! AACATTCCCATTCACTTTTT+TGG + chr8_1:51273887-51273906 Msa1199290:intron 30.0%
CTATTGCCAAAAAAGTGAAT+GGG - chr8_1:51273896-51273915 None:intergenic 30.0%
TTTAGTTGCCGTAAAGAAAT+CGG + chr8_1:51274198-51274217 Msa1199290:intron 30.0%
TTTAAATGTGGAGATGTGTT+TGG - chr8_1:51274336-51274355 None:intergenic 30.0%
AATCTGGTCCTATAAAAGAA+AGG + chr8_1:51274459-51274478 Msa1199290:intron 30.0%
ATCTGGTCCTATAAAAGAAA+GGG + chr8_1:51274460-51274479 Msa1199290:intron 30.0%
!! TTTAGCCTTAGAGAATAATC+TGG - chr8_1:51274593-51274612 None:intergenic 30.0%
AAGAACAAATGTTGGAAATG+AGG + chr8_1:51275084-51275103 Msa1199290:intron 30.0%
ATAGGGAACAAACATCTTAT+GGG + chr8_1:51275183-51275202 Msa1199290:intron 30.0%
GTTGTACATATCATTGCTTT+GGG - chr8_1:51275225-51275244 None:intergenic 30.0%
AATGATATGTACAACGATGA+AGG + chr8_1:51275230-51275249 Msa1199290:intron 30.0%
ATGATATGTACAACGATGAA+GGG + chr8_1:51275231-51275250 Msa1199290:intron 30.0%
! TCTGAACTTGTATTCACTTT+TGG + chr8_1:51275256-51275275 Msa1199290:intron 30.0%
! ACACGAAGTATAAGTATTGT+TGG + chr8_1:51275492-51275511 Msa1199290:intron 30.0%
! CACGAAGTATAAGTATTGTT+GGG + chr8_1:51275493-51275512 Msa1199290:intron 30.0%
CCAAAAAGAAAAAAGAAGAC+CGG + chr8_1:51275558-51275577 Msa1199290:intron 30.0%
!!! TATTTTTGGAGTTTGTCTTG+TGG - chr8_1:51275658-51275677 None:intergenic 30.0%
! TGAGAAAATTTTCAATGGAG+AGG - chr8_1:51275847-51275866 None:intergenic 30.0%
! TTTGATGGTTGAGATTTCAA+TGG + chr8_1:51275937-51275956 Msa1199290:intron 30.0%
ACGTTAGGTGATGAATTTGA+AGG + chr8_1:51268664-51268683 Msa1199290:CDS 35.0%
AAAAGCCTAATATTTCGACG+AGG - chr8_1:51268754-51268773 None:intergenic 35.0%
!!! GATTTCACCTTTTTAGGTCA+AGG + chr8_1:51268793-51268812 Msa1199290:CDS 35.0%
!!! TAGTTTTGTTCTTTTCGTCC+GGG - chr8_1:51269021-51269040 None:intergenic 35.0%
GTCCCATATTGGACAAAATA+TGG + chr8_1:51269104-51269123 Msa1199290:intron 35.0%
! GGCCATATTTTGTCCAATAT+GGG - chr8_1:51269109-51269128 None:intergenic 35.0%
! AGGCCATATTTTGTCCAATA+TGG - chr8_1:51269110-51269129 None:intergenic 35.0%
CCACTTATAAACACAAGTTC+AGG - chr8_1:51269130-51269149 None:intergenic 35.0%
CCTGAACTTGTGTTTATAAG+TGG + chr8_1:51269127-51269146 Msa1199290:intron 35.0%
! CGATTTTGTGGGATTGTATT+AGG + chr8_1:51269171-51269190 Msa1199290:intron 35.0%
CCATCTTAGAAATCGTGATT+AGG - chr8_1:51269197-51269216 None:intergenic 35.0%
! CCTAATCACGATTTCTAAGA+TGG + chr8_1:51269194-51269213 Msa1199290:intron 35.0%
!! AGATGGATTAAGTGACTTTG+TGG + chr8_1:51269211-51269230 Msa1199290:intron 35.0%
TAAAACGTAAGTGCTTAACG+CGG + chr8_1:51269515-51269534 Msa1199290:intron 35.0%
TCCATTGATGAACTCGAAAA+CGG - chr8_1:51269564-51269583 None:intergenic 35.0%
CAAATGTGTAGTTTCCAATC+TGG + chr8_1:51270005-51270024 Msa1199290:intron 35.0%
TGCATGCCAGAAAGTAAATT+AGG - chr8_1:51270044-51270063 None:intergenic 35.0%
! CTTTCTGGCATGCATTATTT+AGG + chr8_1:51270050-51270069 Msa1199290:intron 35.0%
! GCATTATTTAGGGTGACTTT+AGG + chr8_1:51270061-51270080 Msa1199290:intron 35.0%
CAATTCCTCTTTGGTTGTAA+TGG + chr8_1:51270104-51270123 Msa1199290:intron 35.0%
!!! CATGGGTACTTCTTTTTTGT+TGG + chr8_1:51270262-51270281 Msa1199290:intron 35.0%
TAGACAGTGTTGTCAAATAG+CGG - chr8_1:51270446-51270465 None:intergenic 35.0%
CATATGCAAGACATACAATC+AGG - chr8_1:51270482-51270501 None:intergenic 35.0%
ATTGTGATATAACCCCAGAT+TGG + chr8_1:51270696-51270715 Msa1199290:intron 35.0%
! AACTCCCGGTAAACTTTTAA+AGG - chr8_1:51270809-51270828 None:intergenic 35.0%
TTAATTTCACGATGAACTCC+CGG - chr8_1:51270823-51270842 None:intergenic 35.0%
AGAGCAATGTTGTCAAATAG+TGG + chr8_1:51270956-51270975 Msa1199290:intron 35.0%
ATAGTAGCACTATAGCATAG+TGG + chr8_1:51271065-51271084 Msa1199290:intron 35.0%
TAGTAGCACTATAGCATAGT+GGG + chr8_1:51271066-51271085 Msa1199290:intron 35.0%
AGTAGCACATATGTTCTATC+TGG + chr8_1:51271174-51271193 Msa1199290:intron 35.0%
ATGTTCCATTCACAGTCAAA+GGG - chr8_1:51271282-51271301 None:intergenic 35.0%
TATGTTCCATTCACAGTCAA+AGG - chr8_1:51271283-51271302 None:intergenic 35.0%
TACTCAATTGATACAGTGGT+GGG - chr8_1:51271387-51271406 None:intergenic 35.0%
TTACTCAATTGATACAGTGG+TGG - chr8_1:51271388-51271407 None:intergenic 35.0%
GATGTCCAAACAAAATGTGA+GGG + chr8_1:51271416-51271435 Msa1199290:intron 35.0%
ATGTCCAAACAAAATGTGAG+GGG + chr8_1:51271417-51271436 Msa1199290:intron 35.0%
AGATATGTGGTGATTCTGTA+GGG - chr8_1:51271585-51271604 None:intergenic 35.0%
GGTCAAAATTGTGAGATATG+TGG - chr8_1:51271598-51271617 None:intergenic 35.0%
GGTCATCCAAAAACAAAATG+AGG - chr8_1:51271864-51271883 None:intergenic 35.0%
TCTTAACAGCAATGAACTTG+TGG - chr8_1:51271885-51271904 None:intergenic 35.0%
AGGTACTATTGTTAGTTGTG+GGG + chr8_1:51272112-51272131 Msa1199290:intron 35.0%
!!! CTGAAGTGGACATGATTTTT+TGG + chr8_1:51272237-51272256 Msa1199290:intron 35.0%
! CTCTCTCTCTCCATTATTTT+TGG - chr8_1:51272797-51272816 None:intergenic 35.0%
! CAAAAATAATGGAGAGAGAG+AGG + chr8_1:51272795-51272814 Msa1199290:intron 35.0%
CTAGGATTGACCTAAATGTA+AGG + chr8_1:51273181-51273200 Msa1199290:intron 35.0%
TGTGCAGACCTTATCTATAA+CGG + chr8_1:51273367-51273386 Msa1199290:intron 35.0%
AATATATCTTCGGGTGTCTA+TGG + chr8_1:51273411-51273430 Msa1199290:intron 35.0%
ACGAGACAATTTGACGTTAA+TGG + chr8_1:51273638-51273657 Msa1199290:intron 35.0%
!! TTTTGAGGGGAAAAGAAGAT+GGG - chr8_1:51273751-51273770 None:intergenic 35.0%
!! TTTTTGAGGGGAAAAGAAGA+TGG - chr8_1:51273752-51273771 None:intergenic 35.0%
GGCAAAATCTATTTAATGCG+TGG - chr8_1:51273781-51273800 None:intergenic 35.0%
CCTATTGCCAAAAAAGTGAA+TGG - chr8_1:51273897-51273916 None:intergenic 35.0%
!!! CCATTCACTTTTTTGGCAAT+AGG + chr8_1:51273894-51273913 Msa1199290:intron 35.0%
TTAGTTGCCGTAAAGAAATC+GGG + chr8_1:51274199-51274218 Msa1199290:intron 35.0%
TAAAGCAACCATCATCATCA+TGG + chr8_1:51274566-51274585 Msa1199290:intron 35.0%
ATGGACCAGATTATTCTCTA+AGG + chr8_1:51274585-51274604 Msa1199290:intron 35.0%
!!! TTTCTTTGAGGTGTTGCTTT+TGG - chr8_1:51275144-51275163 None:intergenic 35.0%
GATAGGGAACAAACATCTTA+TGG + chr8_1:51275182-51275201 Msa1199290:intron 35.0%
CGTTGTACATATCATTGCTT+TGG - chr8_1:51275226-51275245 None:intergenic 35.0%
!!! CCGGTCTTCTTTTTTCTTTT+TGG - chr8_1:51275561-51275580 None:intergenic 35.0%
!!! AAGTGGTTAGTGGGTTTTAA+TGG - chr8_1:51275894-51275913 None:intergenic 35.0%
ACAGAGAGAAATCATGGATT+TGG - chr8_1:51275997-51276016 None:intergenic 35.0%
TCAGGTCAAAAGACTTGATT+CGG - chr8_1:51276051-51276070 None:intergenic 35.0%
! TTGTTACTTCTGCTGTGTTG+TGG - chr8_1:51268538-51268557 None:intergenic 40.0%
TTCTTGAAGTACGAGGTAGT+TGG - chr8_1:51268716-51268735 None:intergenic 40.0%
AACTACCTCGTACTTCAAGA+AGG + chr8_1:51268715-51268734 Msa1199290:CDS 40.0%
CTTCAAGAAGGTTCCAAACA+TGG + chr8_1:51268727-51268746 Msa1199290:CDS 40.0%
ATGGTCCTCGTCGAAATATT+AGG + chr8_1:51268746-51268765 Msa1199290:CDS 40.0%
GTCTTGACCTTGACCTAAAA+AGG - chr8_1:51268803-51268822 None:intergenic 40.0%
! GACAGTGATTTGGATCAAGT+GGG - chr8_1:51268825-51268844 None:intergenic 40.0%
! AGACAGTGATTTGGATCAAG+TGG - chr8_1:51268826-51268845 None:intergenic 40.0%
CTAGGGAAGAACTTGCAATT+AGG + chr8_1:51268869-51268888 Msa1199290:CDS 40.0%
! GGAGGATTTAAGTTCAAACC+CGG + chr8_1:51269000-51269019 Msa1199290:intron 40.0%
!! ACCTCACAAACCGATTTTGT+GGG + chr8_1:51269160-51269179 Msa1199290:intron 40.0%
TGGATTAAGTGACTTTGTGG+CGG + chr8_1:51269214-51269233 Msa1199290:intron 40.0%
!!! TCCGTTTTCGAGTTCATCAA+TGG + chr8_1:51269560-51269579 Msa1199290:intron 40.0%
ATTGCGGCTCTATATTGTAG+TGG + chr8_1:51269764-51269783 Msa1199290:intron 40.0%
TTCGACAAGCTCTTATAGAG+TGG - chr8_1:51269931-51269950 None:intergenic 40.0%
GAAAAAGGGGAAATCCAGAT+TGG - chr8_1:51270022-51270041 None:intergenic 40.0%
!! AGGGATTTCATTTTAGGGGA+AGG + chr8_1:51270081-51270100 Msa1199290:intron 40.0%
CATGTCCATTACAACCAAAG+AGG - chr8_1:51270112-51270131 None:intergenic 40.0%
TTGAGACTTGAGGAACCATT+AGG - chr8_1:51270195-51270214 None:intergenic 40.0%
ATGTTGTCCAATGCAGTTTG+TGG + chr8_1:51270295-51270314 Msa1199290:intron 40.0%
TCAAATTTCACTATGCTGCG+TGG + chr8_1:51270333-51270352 Msa1199290:intron 40.0%
GTCTTGCATATGCTTAGTGT+TGG + chr8_1:51270490-51270509 Msa1199290:intron 40.0%
!!! CTGGTAGACCTTTGTTTTGT+AGG + chr8_1:51270538-51270557 Msa1199290:intron 40.0%
CGGTACGGATGAGAAAATAT+GGG - chr8_1:51270661-51270680 None:intergenic 40.0%
TCGGTACGGATGAGAAAATA+TGG - chr8_1:51270662-51270681 None:intergenic 40.0%
GCAATGTTGTCAAATAGTGG+CGG + chr8_1:51270959-51270978 Msa1199290:intron 40.0%
TCACAGATCGCAGAAAATAG+CGG - chr8_1:51271103-51271122 None:intergenic 40.0%
CAGCAATATATACGAGCTAG+TGG + chr8_1:51271127-51271146 Msa1199290:intron 40.0%
AATTCCCCTTTGACTGTGAA+TGG + chr8_1:51271274-51271293 Msa1199290:intron 40.0%
TGTTCCATTCACAGTCAAAG+GGG - chr8_1:51271281-51271300 None:intergenic 40.0%
GGATGTCCAAACAAAATGTG+AGG + chr8_1:51271415-51271434 Msa1199290:intron 40.0%
GAGATATGTGGTGATTCTGT+AGG - chr8_1:51271586-51271605 None:intergenic 40.0%
AAGGCAGTGAAAAACTTGGA+TGG - chr8_1:51271619-51271638 None:intergenic 40.0%
! TCCAAGTTTTTCACTGCCTT+AGG + chr8_1:51271619-51271638 Msa1199290:intron 40.0%
! GGGCTTATAAAAAAGGGTGT+AGG + chr8_1:51271796-51271815 Msa1199290:intron 40.0%
! CTAAGAGTGGTCTTTTTGCA+GGG - chr8_1:51271910-51271929 None:intergenic 40.0%
TCAGTCTTAGTGTCTACTTG+AGG + chr8_1:51273145-51273164 Msa1199290:intron 40.0%
CTTAACTGGTAGTCTATGGA+TGG - chr8_1:51273569-51273588 None:intergenic 40.0%
TCTTATCATTTCATGAGCCG+TGG - chr8_1:51273991-51274010 None:intergenic 40.0%
AGGACTACCCGATTTCTTTA+CGG - chr8_1:51274209-51274228 None:intergenic 40.0%
! AATCTGGTCCATGATGATGA+TGG - chr8_1:51274577-51274596 None:intergenic 40.0%
TACTATTGCGTTGCAAGATC+CGG - chr8_1:51275580-51275599 None:intergenic 40.0%
GTGAAAACCCTCTAATAACG+AGG + chr8_1:51275627-51275646 Msa1199290:intron 40.0%
! GGTTTTGCCTCGTTATTAGA+GGG - chr8_1:51275637-51275656 None:intergenic 40.0%
!! TGGTTTTGCCTCGTTATTAG+AGG - chr8_1:51275638-51275657 None:intergenic 40.0%
!!! TGGTTAGTGGGTTTTAATGG+TGG - chr8_1:51275891-51275910 None:intergenic 40.0%
CCATGTACAGAGAGAAATCA+TGG - chr8_1:51276003-51276022 None:intergenic 40.0%
CCATGATTTCTCTCTGTACA+TGG + chr8_1:51276000-51276019 Msa1199290:intron 40.0%
CAGGTCAAAAGACTTGATTC+GGG - chr8_1:51276050-51276069 None:intergenic 40.0%
TATCTTACAAAAGGTGGCAG+AGG + chr8_1:51276251-51276270 Msa1199290:CDS 40.0%
ACAAAAGATGGCGATGACGA+TGG + chr8_1:51268573-51268592 Msa1199290:exon 45.0%
CAACAACGGAGATGAGTTTG+CGG + chr8_1:51268615-51268634 Msa1199290:CDS 45.0%
! TGGGTTGTTTCCTTTCGATC+AGG + chr8_1:51268638-51268657 Msa1199290:CDS 45.0%
CTAACGTTGTCCTGATCGAA+AGG - chr8_1:51268651-51268670 None:intergenic 45.0%
CTTTCGATCAGGACAACGTT+AGG + chr8_1:51268649-51268668 Msa1199290:CDS 45.0%
TGGAACCTTCTTGAAGTACG+AGG - chr8_1:51268723-51268742 None:intergenic 45.0%
ATTTCGACGAGGACCATGTT+TGG - chr8_1:51268743-51268762 None:intergenic 45.0%
!! CAAAATCGGTTTGTGAGGTG+AGG - chr8_1:51269159-51269178 None:intergenic 45.0%
!! CACCTCACAAACCGATTTTG+TGG + chr8_1:51269159-51269178 Msa1199290:intron 45.0%
!! TCCCACAAAATCGGTTTGTG+AGG - chr8_1:51269164-51269183 None:intergenic 45.0%
! ACTTTGTGGCGGAAAAGTCA+TGG + chr8_1:51269225-51269244 Msa1199290:intron 45.0%
AAGCAGATGCTGAGAGGATT+GGG + chr8_1:51269448-51269467 Msa1199290:CDS 45.0%
GATGAACTCGAAAACGGACA+TGG - chr8_1:51269558-51269577 None:intergenic 45.0%
!! ACTCTAGCTCTGTAGCATAG+CGG + chr8_1:51269864-51269883 Msa1199290:intron 45.0%
ACACATTTGAGCTCTACGAC+AGG - chr8_1:51269994-51270013 None:intergenic 45.0%
TCCAAACAAAATGTGGGGCA+TGG + chr8_1:51270244-51270263 Msa1199290:intron 45.0%
CCAAACAAAATGTGGGGCAT+GGG + chr8_1:51270245-51270264 Msa1199290:intron 45.0%
CTAGTGTCCACAAACTGCAT+TGG - chr8_1:51270305-51270324 None:intergenic 45.0%
ATGCAGTTTGTGGACACTAG+TGG + chr8_1:51270305-51270324 Msa1199290:intron 45.0%
AAATAGCGGCGCTACAACAT+GGG - chr8_1:51270432-51270451 None:intergenic 45.0%
! TGATACAGTGGTGGGACTTT+GGG - chr8_1:51271379-51271398 None:intergenic 45.0%
! TTGATACAGTGGTGGGACTT+TGG - chr8_1:51271380-51271399 None:intergenic 45.0%
CAAACAAAATGTGAGGGGCA+GGG + chr8_1:51271422-51271441 Msa1199290:intron 45.0%
AAACAAAATGTGAGGGGCAG+GGG + chr8_1:51271423-51271442 Msa1199290:intron 45.0%
GCCTAAGGCAGTGAAAAACT+TGG - chr8_1:51271623-51271642 None:intergenic 45.0%
! GCTAAGAGTGGTCTTTTTGC+AGG - chr8_1:51271911-51271930 None:intergenic 45.0%
CTCAACATGGAAGCTAAGAG+TGG - chr8_1:51271923-51271942 None:intergenic 45.0%
CCACTTCAGACAGATGTCTT+TGG - chr8_1:51272226-51272245 None:intergenic 45.0%
CCAAAGACATCTGTCTGAAG+TGG + chr8_1:51272223-51272242 Msa1199290:intron 45.0%
TGAGGATGTGTCTCACAACT+AGG + chr8_1:51273163-51273182 Msa1199290:intron 45.0%
!!! TGCGTGGGGATGTTTTTTGA+GGG - chr8_1:51273765-51273784 None:intergenic 45.0%
!!! ATGCGTGGGGATGTTTTTTG+AGG - chr8_1:51273766-51273785 None:intergenic 45.0%
ACTTTAAGTCCCGTGAGCTT+TGG + chr8_1:51274265-51274284 Msa1199290:intron 45.0%
!! ATGGATTGGTGTTTGAGCCA+CGG + chr8_1:51274309-51274328 Msa1199290:intron 45.0%
!!! GGTGTTGCTTTTGGTGTTAG+TGG - chr8_1:51275135-51275154 None:intergenic 45.0%
GTTGGGTTCGACGAGTATAA+TGG + chr8_1:51275510-51275529 Msa1199290:intron 45.0%
TTAGGCAATTCAGCCATACG+TGG + chr8_1:51276198-51276217 Msa1199290:CDS 45.0%
!!! AATTTTAAATTTTTATTGAT+GGG + chr8_1:51268938-51268957 Msa1199290:intron 5.0%
!!! TACAAAATTAATTTTTTTAA+TGG - chr8_1:51269047-51269066 None:intergenic 5.0%
!!! TATTTTTTTATAATAAAACA+TGG + chr8_1:51271311-51271330 Msa1199290:intron 5.0%
!! TTTATTTAAAAAACTTTATA+TGG + chr8_1:51272307-51272326 Msa1199290:intron 5.0%
!! TTATTTAAAAAACTTTATAT+GGG + chr8_1:51272308-51272327 Msa1199290:intron 5.0%
!!! TAAAGAATTTTTTTATATAT+GGG - chr8_1:51273296-51273315 None:intergenic 5.0%
!!! TCTTTAAAAAAAATTATTTT+TGG - chr8_1:51274385-51274404 None:intergenic 5.0%
ATGGCGATGACGATGGAAAG+TGG + chr8_1:51268580-51268599 Msa1199290:CDS 50.0%
GGCAGCAGCAACAACAACAA+CGG + chr8_1:51268601-51268620 Msa1199290:CDS 50.0%
AACGGAGATGAGTTTGCGGT+GGG + chr8_1:51268619-51268638 Msa1199290:CDS 50.0%
AAGCTGAAGCAGATGCTGAG+AGG + chr8_1:51269442-51269461 Msa1199290:CDS 50.0%
GAAGCAGATGCTGAGAGGAT+TGG + chr8_1:51269447-51269466 Msa1199290:CDS 50.0%
AGCAGATGCTGAGAGGATTG+GGG + chr8_1:51269449-51269468 Msa1199290:CDS 50.0%
!! CTCTAGCTCTGTAGCATAGC+GGG + chr8_1:51269865-51269884 Msa1199290:intron 50.0%
AGGGGAAGGCAATTCCTCTT+TGG + chr8_1:51270095-51270114 Msa1199290:intron 50.0%
! CGATACGGTGTTGAGACTTG+AGG - chr8_1:51270205-51270224 None:intergenic 50.0%
! CCCATGCCCCACATTTTGTT+TGG - chr8_1:51270248-51270267 None:intergenic 50.0%
AATAGCGGCGCTACAACATG+GGG - chr8_1:51270431-51270450 None:intergenic 50.0%
CAAATAGCGGCGCTACAACA+TGG - chr8_1:51270433-51270452 None:intergenic 50.0%
! CCTGCCCCTCACATTTTGTT+TGG - chr8_1:51271424-51271443 None:intergenic 50.0%
CCAAACAAAATGTGAGGGGC+AGG + chr8_1:51271421-51271440 Msa1199290:intron 50.0%
TCTGTAGGGCGTACAGTAGA+AGG - chr8_1:51271571-51271590 None:intergenic 50.0%
CTTCCATGTTGAGTGTGCGA+GGG + chr8_1:51271930-51271949 Msa1199290:intron 50.0%
ATGTTGAGTGTGCGAGGGTA+GGG + chr8_1:51271935-51271954 Msa1199290:intron 50.0%
!!! GCGTGGGGATGTTTTTTGAG+GGG - chr8_1:51273764-51273783 None:intergenic 50.0%
! TAAGTCCCGTGAGCTTTGGT+CGG + chr8_1:51274269-51274288 Msa1199290:intron 50.0%
TAATCCCGACCAAAGCTCAC+GGG - chr8_1:51274277-51274296 None:intergenic 50.0%
GTAATCCCGACCAAAGCTCA+CGG - chr8_1:51274278-51274297 None:intergenic 50.0%
!! GGCAGAGGTGTCAACTTAGT+TGG - chr8_1:51275114-51275133 None:intergenic 50.0%
!!! GCTTTTGGTGTTAGTGGCAG+AGG - chr8_1:51275129-51275148 None:intergenic 50.0%
CAACGGAGATGAGTTTGCGG+TGG + chr8_1:51268618-51268637 Msa1199290:CDS 55.0%
GATGCTGAGAGGATTGGGGT+TGG + chr8_1:51269453-51269472 Msa1199290:CDS 55.0%
ATAGCGGCGCTACAACATGG+GGG - chr8_1:51270430-51270449 None:intergenic 55.0%
! GGTGGGACTTTGGGAACACT+TGG - chr8_1:51271370-51271389 None:intergenic 55.0%
GCTTCCATGTTGAGTGTGCG+AGG + chr8_1:51271929-51271948 Msa1199290:intron 55.0%
CTACCCTCGCACACTCAACA+TGG - chr8_1:51271936-51271955 None:intergenic 55.0%
CATGTTGAGTGTGCGAGGGT+AGG + chr8_1:51271934-51271953 Msa1199290:intron 55.0%
! AAGTCCCGTGAGCTTTGGTC+GGG + chr8_1:51274270-51274289 Msa1199290:intron 55.0%
GTGGAGATGTGTTTGGTCCG+TGG - chr8_1:51274329-51274348 None:intergenic 55.0%
GGCAATTCAGCCATACGTGG+TGG + chr8_1:51276201-51276220 Msa1199290:CDS 55.0%
!! TTCAGCCATACGTGGTGGAC+TGG + chr8_1:51276206-51276225 Msa1199290:CDS 55.0%
CAAAAGGTGGCAGAGGACGT+CGG + chr8_1:51276258-51276277 Msa1199290:CDS 55.0%
GAGTGTGCGAGGGTAGGGAA+TGG + chr8_1:51271940-51271959 Msa1199290:intron 60.0%
!! AGCCATACGTGGTGGACTGG+TGG + chr8_1:51276209-51276228 Msa1199290:CDS 60.0%
CACCACCAGTCCACCACGTA+TGG - chr8_1:51276214-51276233 None:intergenic 60.0%
!! CATACGTGGTGGACTGGTGG+TGG + chr8_1:51276212-51276231 Msa1199290:CDS 60.0%
AGGACGTCGGCAGAGGACGT+CGG + chr8_1:51276271-51276290 Msa1199290:CDS 65.0%
GTGGCAGAGGACGTCGGCAG+AGG + chr8_1:51276264-51276283 Msa1199290:CDS 70.0%
TCGGCAGAGGACGTCGGCAG+AGG + chr8_1:51276277-51276296 Msa1199290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 51268509 51276305 51268509 ID=Msa1199290;Name=Msa1199290
chr8_1 mRNA 51268509 51276305 51268509 ID=Msa1199290-mRNA-1;Parent=Msa1199290;Name=Msa1199290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=71|0.5|0.33|0.66|1|1|3|0|166
chr8_1 exon 51268509 51268890 51268509 ID=Msa1199290-mRNA-1:exon:16198;Parent=Msa1199290-mRNA-1
chr8_1 exon 51269440 51269520 51269440 ID=Msa1199290-mRNA-1:exon:16199;Parent=Msa1199290-mRNA-1
chr8_1 exon 51276197 51276305 51276197 ID=Msa1199290-mRNA-1:exon:16200;Parent=Msa1199290-mRNA-1
chr8_1 five_prime_UTR 51268509 51268579 51268509 ID=Msa1199290-mRNA-1:five_prime_utr;Parent=Msa1199290-mRNA-1
chr8_1 CDS 51268580 51268890 51268580 ID=Msa1199290-mRNA-1:cds;Parent=Msa1199290-mRNA-1
chr8_1 CDS 51269440 51269520 51269440 ID=Msa1199290-mRNA-1:cds;Parent=Msa1199290-mRNA-1
chr8_1 CDS 51276197 51276305 51276197 ID=Msa1199290-mRNA-1:cds;Parent=Msa1199290-mRNA-1
Gene Sequence

>Msa1199290

ATGGCGATGACGATGGAAAGTGGCAGCAGCAACAACAACAACGGAGATGAGTTTGCGGTGGGTTGTTTCCTTTCGATCAGGACAACGTTAGGTGATGAATTTGAAGGTCAAGTTGTTACTTTTGATCGTGATTCCAACTACCTCGTACTTCAAGAAGGTTCCAAACATGGTCCTCGTCGAAATATTAGGCTTTTGAAAGCTGATTATATCAAAGATTTCACCTTTTTAGGTCAAGGTCAAGACCCACTTGATCCAAATCACTGTCTTCTTGATATTAATGCTCTTCAATCTAGGGAAGAACTTGCAATTAGACAAGCTGAAGCAGATGCTGAGAGGATTGGGGTTGGTGTTACAAGTGAAGCACAGAACATCTTTGATGCATTATCTAAAACCTTAGGCAATTCAGCCATACGTGGTGGACTGGTGGTGGATCCTACAAGTATAAATATCTTACAAAAGGTGGCAGAGGACGTCGGCAGAGGACGTCGGCAGAGGACGTAA

Protein sequence

>Msa1199290

MAMTMESGSSNNNNGDEFAVGCFLSIRTTLGDEFEGQVVTFDRDSNYLVLQEGSKHGPRRNIRLLKADYIKDFTFLGQGQDPLDPNHCLLDINALQSREELAIRQAEADAERIGVGVTSEAQNIFDALSKTLGNSAIRGGLVVDPTSINILQKVAEDVGRGRRQRT*