Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105750 | XP_013466570.1 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.39e-116 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105750 | sp|Q9ZU95|NUD17_ARATH | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.74e-79 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105750 | G8A033 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 2.09e-116 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012100 | Msa0105750 | 0.811015 | 8.649114e-51 | -8.615850e-47 |
| Msa0061200 | Msa0105750 | 0.970484 | 1.093688e-131 | -8.615850e-47 |
| Msa0105750 | Msa0152120 | 0.957064 | 6.666296e-115 | -8.615850e-47 |
| Msa0105750 | Msa0358120 | 0.806274 | 8.908395e-50 | -8.615850e-47 |
| Msa0105750 | Msa0472720 | 0.806474 | 8.083137e-50 | -8.615850e-47 |
| Msa0105750 | Msa0472770 | 0.801658 | 8.114458e-49 | -8.615850e-47 |
| Msa0105750 | Msa0615680 | 0.822421 | 2.390413e-53 | -8.615850e-47 |
| Msa0105750 | Msa0748660 | 0.821376 | 4.172939e-53 | -8.615850e-47 |
| Msa0105750 | Msa1421900 | 0.815847 | 7.496724e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105750 | MtrunA17_Chr1g0161131 | 97.576 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.03e-120 | 335 |
| Msa0105750 | MtrunA17_Chr8g0391621 | 81.013 | 158 | 30 | 0 | 1 | 158 | 1 | 158 | 1.85e-95 | 273 |
| Msa0105750 | MtrunA17_Chr3g0110281 | 68.098 | 163 | 49 | 2 | 1 | 161 | 32 | 193 | 3.44e-76 | 226 |
| Msa0105750 | MtrunA17_Chr5g0434521 | 60.479 | 167 | 61 | 3 | 1 | 165 | 10 | 173 | 3.14e-65 | 197 |
| Msa0105750 | MtrunA17_Chr6g0479111 | 59.748 | 159 | 60 | 3 | 1 | 158 | 72 | 227 | 1.81e-63 | 194 |
| Msa0105750 | MtrunA17_Chr8g0353331 | 47.500 | 160 | 76 | 3 | 1 | 153 | 1 | 159 | 4.89e-43 | 140 |
| Msa0105750 | MtrunA17_Chr7g0252391 | 46.875 | 160 | 74 | 4 | 1 | 150 | 1 | 159 | 8.70e-36 | 124 |
| Msa0105750 | MtrunA17_Chr1g0189471 | 46.154 | 65 | 33 | 2 | 1 | 64 | 1 | 64 | 7.24e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105750 | AT2G01670.1 | 68.098 | 163 | 51 | 1 | 1 | 163 | 6 | 167 | 2.78e-80 | 236 |
| Msa0105750 | AT1G14860.1 | 71.069 | 159 | 45 | 1 | 1 | 159 | 1 | 158 | 4.49e-80 | 235 |
| Msa0105750 | AT1G18300.1 | 54.487 | 156 | 70 | 1 | 1 | 155 | 40 | 195 | 1.44e-61 | 189 |
| Msa0105750 | AT1G73540.1 | 54.777 | 157 | 66 | 2 | 1 | 156 | 41 | 193 | 9.35e-60 | 184 |
| Msa0105750 | AT1G12880.1 | 46.108 | 167 | 76 | 4 | 1 | 154 | 1 | 166 | 9.04e-38 | 128 |
| Msa0105750 | AT3G26690.1 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0105750 | AT3G26690.2 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 6.66e-37 | 126 |
| Msa0105750 | AT3G12600.1 | 48.428 | 159 | 72 | 4 | 1 | 150 | 1 | 158 | 1.16e-34 | 120 |
| Msa0105750 | AT3G12600.2 | 48.299 | 147 | 66 | 4 | 13 | 150 | 4 | 149 | 1.23e-30 | 109 |
Find 37 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTACGTACAAGAATA+TGG | 0.220819 | 1_3:+14358231 | Msa0105750:CDS |
| CATATTATTGCAGCATGAAT+TGG | 0.282486 | 1_3:+14358112 | Msa0105750:intron |
| CTTGAAGAAGCAGGAGTTAT+AGG | 0.288124 | 1_3:+14357978 | Msa0105750:CDS |
| GCAAGACATTGATGGCAATA+TGG | 0.292101 | 1_3:+14357741 | Msa0105750:CDS |
| GTTTGTTTGGTATCTCGTTC+TGG | 0.365455 | 1_3:+14357309 | Msa0105750:CDS |
| ATGTCTTGCTTATATCTGTA+TGG | 0.367359 | 1_3:-14357727 | None:intergenic |
| AAGAGAGAAGATGGTTTGTT+TGG | 0.367598 | 1_3:+14357296 | None:intergenic |
| ATGCAAAGATACAATGAAAC+TGG | 0.406646 | 1_3:+14357339 | Msa0105750:CDS |
| CTTTAGATAGACTTGTTGAT+AGG | 0.406743 | 1_3:+14358752 | Msa0105750:CDS |
| TGGCAATATGGGTAATGAAT+TGG | 0.419006 | 1_3:+14357753 | Msa0105750:CDS |
| CTATAACTCCTGCTTCTTCA+AGG | 0.424048 | 1_3:-14357977 | None:intergenic |
| ATATTATTGCAGCATGAATT+GGG | 0.424242 | 1_3:+14358113 | Msa0105750:intron |
| ACTTGTTGTTAGTTCACAAA+AGG | 0.426291 | 1_3:+14357780 | Msa0105750:CDS |
| CAAGACATTGATGGCAATAT+GGG | 0.436846 | 1_3:+14357742 | Msa0105750:CDS |
| AGTTTCATTAGCAAAAGATA+TGG | 0.452059 | 1_3:+14358143 | Msa0105750:CDS |
| AGATATAAGCAAGACATTGA+TGG | 0.458567 | 1_3:+14357733 | Msa0105750:CDS |
| AGTTGTTCCTTGACAAGTAA+GGG | 0.479458 | 1_3:-14358191 | None:intergenic |
| ACTGGTGGTCGTCAAGTTGT+AGG | 0.480361 | 1_3:+14357357 | Msa0105750:CDS |
| CCAGAGATGTTTGTCAGCAT+TGG | 0.482593 | 1_3:+14358716 | Msa0105750:CDS |
| GAGATGTTTGTCAGCATTGG+TGG | 0.494181 | 1_3:+14358719 | Msa0105750:CDS |
| AAGTTGTTCCTTGACAAGTA+AGG | 0.495158 | 1_3:-14358192 | None:intergenic |
| TATAACTCCTGCTTCTTCAA+GGG | 0.500603 | 1_3:-14357976 | None:intergenic |
| CCAATGCTGACAAACATCTC+TGG | 0.500836 | 1_3:-14358716 | None:intergenic |
| AAATCTACGTACAAGAATAT+GGG | 0.505617 | 1_3:+14358232 | Msa0105750:CDS |
| CATGTTTCCCTTACTTGTCA+AGG | 0.509328 | 1_3:+14358184 | Msa0105750:CDS |
| CTTGTTGTTAGTTCACAAAA+GGG | 0.509904 | 1_3:+14357781 | Msa0105750:CDS |
| TTGTCAGCATTGGTGGATGA+AGG | 0.547295 | 1_3:+14358726 | Msa0105750:CDS |
| TCAAGGAACAACTTGAACAC+TGG | 0.547860 | 1_3:+14358201 | Msa0105750:CDS |
| CTGGTGGTCGTCAAGTTGTA+GGG | 0.551311 | 1_3:+14357358 | Msa0105750:CDS |
| AGAGAATCCCTTGAAGAAGC+AGG | 0.552630 | 1_3:+14357969 | Msa0105750:CDS |
| TGCAGCATGAATTGGGCGAA+TGG | 0.558114 | 1_3:+14358120 | Msa0105750:intron |
| TGTCTTGCTTATATCTGTAT+GGG | 0.559350 | 1_3:-14357726 | None:intergenic |
| GTTTGGTATCTCGTTCTGGA+AGG | 0.561759 | 1_3:+14357313 | Msa0105750:CDS |
| AGATATGGTACATATTATGA+AGG | 0.566362 | 1_3:+14358158 | Msa0105750:CDS |
| TCAATCATTTATGTTTCCAA+AGG | 0.579468 | 1_3:+14357804 | Msa0105750:CDS |
| AGGAGTTATAGGAATTGTTG+AGG | 0.587265 | 1_3:+14357989 | Msa0105750:CDS |
| CAAAGATACAATGAAACTGG+TGG | 0.647830 | 1_3:+14357342 | Msa0105750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATAAATATTAATGA+AGG | - | chr1_3:14357648-14357667 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_3:14358471-14358490 | None:intergenic | 10.0% |
| !! | TAATGAATAAATATTAATGA+AGG | - | chr1_3:14357648-14357667 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_3:14358471-14358490 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | + | chr1_3:14357905-14357924 | Msa0105750:intron | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | + | chr1_3:14357906-14357925 | Msa0105750:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_3:14358566-14358585 | None:intergenic | 15.0% |
| !!! | TTATTAATTTGTTTTGATTC+AGG | + | chr1_3:14357905-14357924 | Msa0105750:intron | 15.0% |
| !!! | TATTAATTTGTTTTGATTCA+GGG | + | chr1_3:14357906-14357925 | Msa0105750:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_3:14358566-14358585 | None:intergenic | 15.0% |
| !! | TCTAATCAAGATATATCAAA+AGG | - | chr1_3:14357554-14357573 | None:intergenic | 20.0% |
| !! | TTTATTCATTAATTGCTTCT+TGG | + | chr1_3:14357657-14357676 | Msa0105750:intron | 20.0% |
| !! | TTGGACATATTAATAAATGT+TGG | - | chr1_3:14357692-14357711 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | + | chr1_3:14357837-14357856 | Msa0105750:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | + | chr1_3:14357847-14357866 | Msa0105750:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_3:14358004-14358023 | Msa0105750:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_3:14358275-14358294 | Msa0105750:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | + | chr1_3:14358338-14358357 | Msa0105750:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_3:14358449-14358468 | None:intergenic | 20.0% |
| !! | TCTAATCAAGATATATCAAA+AGG | - | chr1_3:14357554-14357573 | None:intergenic | 20.0% |
| !! | TTTATTCATTAATTGCTTCT+TGG | + | chr1_3:14357657-14357676 | Msa0105750:intron | 20.0% |
| !! | TTGGACATATTAATAAATGT+TGG | - | chr1_3:14357692-14357711 | None:intergenic | 20.0% |
| !! | TTTCTTTCACATAAAGAAAT+TGG | + | chr1_3:14357837-14357856 | Msa0105750:intron | 20.0% |
| !!! | ATAAAGAAATTGGCTTAATT+AGG | + | chr1_3:14357847-14357866 | Msa0105750:intron | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_3:14358004-14358023 | Msa0105750:intron | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_3:14358275-14358294 | Msa0105750:intron | 20.0% |
| !! | TTAGAAATATAATCTACGAT+CGG | + | chr1_3:14358338-14358357 | Msa0105750:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_3:14358449-14358468 | None:intergenic | 20.0% |
| !! | ATATAGTTTTTATCACTGTC+TGG | + | chr1_3:14357428-14357447 | Msa0105750:intron | 25.0% |
| ! | ATCAAGATATATCAAAAGGA+TGG | - | chr1_3:14357550-14357569 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_3:14357698-14357717 | Msa0105750:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_3:14357804-14357823 | Msa0105750:CDS | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_3:14358113-14358132 | Msa0105750:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_3:14358143-14358162 | Msa0105750:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | + | chr1_3:14358158-14358177 | Msa0105750:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | + | chr1_3:14358231-14358250 | Msa0105750:CDS | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | + | chr1_3:14358232-14358251 | Msa0105750:CDS | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_3:14358591-14358610 | Msa0105750:intron | 25.0% |
| !! | ATATAGTTTTTATCACTGTC+TGG | + | chr1_3:14357428-14357447 | Msa0105750:intron | 25.0% |
| ! | ATCAAGATATATCAAAAGGA+TGG | - | chr1_3:14357550-14357569 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_3:14357698-14357717 | Msa0105750:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_3:14357804-14357823 | Msa0105750:CDS | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_3:14358113-14358132 | Msa0105750:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_3:14358143-14358162 | Msa0105750:CDS | 25.0% |
| ! | AGATATGGTACATATTATGA+AGG | + | chr1_3:14358158-14358177 | Msa0105750:CDS | 25.0% |
| ! | AAAATCTACGTACAAGAATA+TGG | + | chr1_3:14358231-14358250 | Msa0105750:CDS | 25.0% |
| ! | AAATCTACGTACAAGAATAT+GGG | + | chr1_3:14358232-14358251 | Msa0105750:CDS | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_3:14358591-14358610 | Msa0105750:intron | 25.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_3:14357339-14357358 | Msa0105750:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_3:14357502-14357521 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_3:14357729-14357748 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_3:14357730-14357749 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_3:14357733-14357752 | Msa0105750:CDS | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | + | chr1_3:14357780-14357799 | Msa0105750:CDS | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | + | chr1_3:14357781-14357800 | Msa0105750:CDS | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_3:14357808-14357827 | Msa0105750:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_3:14357809-14357828 | Msa0105750:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | + | chr1_3:14357909-14357928 | Msa0105750:intron | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | + | chr1_3:14358112-14358131 | Msa0105750:intron | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | + | chr1_3:14358312-14358331 | Msa0105750:intron | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_3:14358371-14358390 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_3:14358752-14358771 | Msa0105750:CDS | 30.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_3:14357339-14357358 | Msa0105750:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_3:14357502-14357521 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_3:14357729-14357748 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_3:14357730-14357749 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_3:14357733-14357752 | Msa0105750:CDS | 30.0% | |
| !! | ACTTGTTGTTAGTTCACAAA+AGG | + | chr1_3:14357780-14357799 | Msa0105750:CDS | 30.0% |
| !! | CTTGTTGTTAGTTCACAAAA+GGG | + | chr1_3:14357781-14357800 | Msa0105750:CDS | 30.0% |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_3:14357808-14357827 | Msa0105750:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_3:14357809-14357828 | Msa0105750:intron | 30.0% | |
| !!! | TAATTTGTTTTGATTCAGGG+TGG | + | chr1_3:14357909-14357928 | Msa0105750:intron | 30.0% |
| CATATTATTGCAGCATGAAT+TGG | + | chr1_3:14358112-14358131 | Msa0105750:intron | 30.0% | |
| AAAGAAACTTCGTTATGATG+AGG | + | chr1_3:14358312-14358331 | Msa0105750:intron | 30.0% | |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_3:14358371-14358390 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_3:14358752-14358771 | Msa0105750:CDS | 30.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_3:14357342-14357361 | Msa0105750:CDS | 35.0% | |
| TCAGTCTGATCTTGATCTAA+CGG | - | chr1_3:14357457-14357476 | None:intergenic | 35.0% | |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_3:14357742-14357761 | Msa0105750:CDS | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | + | chr1_3:14357753-14357772 | Msa0105750:CDS | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | - | chr1_3:14357823-14357842 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_3:14357979-14357998 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_3:14357989-14358008 | Msa0105750:CDS | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | - | chr1_3:14358194-14358213 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | - | chr1_3:14358195-14358214 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | - | chr1_3:14358227-14358246 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_3:14358681-14358700 | Msa0105750:intron | 35.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_3:14357342-14357361 | Msa0105750:CDS | 35.0% | |
| TCAGTCTGATCTTGATCTAA+CGG | - | chr1_3:14357457-14357476 | None:intergenic | 35.0% | |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_3:14357742-14357761 | Msa0105750:CDS | 35.0% |
| TGGCAATATGGGTAATGAAT+TGG | + | chr1_3:14357753-14357772 | Msa0105750:CDS | 35.0% | |
| AAGAAAGAAATCCCTACCTT+TGG | - | chr1_3:14357823-14357842 | None:intergenic | 35.0% | |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_3:14357979-14357998 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_3:14357989-14358008 | Msa0105750:CDS | 35.0% | |
| AGTTGTTCCTTGACAAGTAA+GGG | - | chr1_3:14358194-14358213 | None:intergenic | 35.0% | |
| AAGTTGTTCCTTGACAAGTA+AGG | - | chr1_3:14358195-14358214 | None:intergenic | 35.0% | |
| ! | CTTGTACGTAGATTTTTCTC+AGG | - | chr1_3:14358227-14358246 | None:intergenic | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_3:14358681-14358700 | Msa0105750:intron | 35.0% |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_3:14357309-14357328 | Msa0105750:CDS | 40.0% | |
| ATGTCCAAAAGGAACGAAAG+CGG | - | chr1_3:14357491-14357510 | None:intergenic | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_3:14357741-14357760 | Msa0105750:CDS | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | + | chr1_3:14357913-14357932 | Msa0105750:intron | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | + | chr1_3:14357914-14357933 | Msa0105750:intron | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_3:14357980-14357999 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_3:14357978-14357997 | Msa0105750:CDS | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | + | chr1_3:14358184-14358203 | Msa0105750:CDS | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | + | chr1_3:14358201-14358220 | Msa0105750:CDS | 40.0% | |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_3:14357309-14357328 | Msa0105750:CDS | 40.0% | |
| ATGTCCAAAAGGAACGAAAG+CGG | - | chr1_3:14357491-14357510 | None:intergenic | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_3:14357741-14357760 | Msa0105750:CDS | 40.0% |
| !!! | TTGTTTTGATTCAGGGTGGA+TGG | + | chr1_3:14357913-14357932 | Msa0105750:intron | 40.0% |
| !!! | TGTTTTGATTCAGGGTGGAT+GGG | + | chr1_3:14357914-14357933 | Msa0105750:intron | 40.0% |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_3:14357980-14357999 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_3:14357978-14357997 | Msa0105750:CDS | 40.0% | |
| CATGTTTCCCTTACTTGTCA+AGG | + | chr1_3:14358184-14358203 | Msa0105750:CDS | 40.0% | |
| TCAAGGAACAACTTGAACAC+TGG | + | chr1_3:14358201-14358220 | Msa0105750:CDS | 40.0% | |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_3:14357313-14357332 | Msa0105750:CDS | 45.0% |
| TGTCCAAAAGGAACGAAAGC+GGG | - | chr1_3:14357490-14357509 | None:intergenic | 45.0% | |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_3:14357711-14357730 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_3:14357969-14357988 | Msa0105750:CDS | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_3:14358719-14358738 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_3:14358716-14358735 | Msa0105750:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_3:14358719-14358738 | Msa0105750:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_3:14358726-14358745 | Msa0105750:CDS | 45.0% |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_3:14357313-14357332 | Msa0105750:CDS | 45.0% |
| TGTCCAAAAGGAACGAAAGC+GGG | - | chr1_3:14357490-14357509 | None:intergenic | 45.0% | |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_3:14357711-14357730 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_3:14357969-14357988 | Msa0105750:CDS | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_3:14358719-14358738 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_3:14358716-14358735 | Msa0105750:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_3:14358719-14358738 | Msa0105750:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_3:14358726-14358745 | Msa0105750:CDS | 45.0% |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_3:14357357-14357376 | Msa0105750:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_3:14357358-14357377 | Msa0105750:CDS | 50.0% |
| ! | GAACGAAAGCGGGTTCACTT+TGG | - | chr1_3:14357480-14357499 | None:intergenic | 50.0% |
| ! | GAACCCGCTTTCGTTCCTTT+TGG | + | chr1_3:14357484-14357503 | Msa0105750:intron | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | + | chr1_3:14358120-14358139 | Msa0105750:intron | 50.0% | |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_3:14357357-14357376 | Msa0105750:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_3:14357358-14357377 | Msa0105750:CDS | 50.0% |
| ! | GAACGAAAGCGGGTTCACTT+TGG | - | chr1_3:14357480-14357499 | None:intergenic | 50.0% |
| ! | GAACCCGCTTTCGTTCCTTT+TGG | + | chr1_3:14357484-14357503 | Msa0105750:intron | 50.0% |
| TGCAGCATGAATTGGGCGAA+TGG | + | chr1_3:14358120-14358139 | Msa0105750:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14357306 | 14358804 | 14357306 | ID=Msa0105750;Name=Msa0105750 |
| chr1_3 | mRNA | 14357306 | 14358804 | 14357306 | ID=Msa0105750-mRNA-1;Parent=Msa0105750;Name=Msa0105750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|165 |
| chr1_3 | exon | 14357306 | 14357379 | 14357306 | ID=Msa0105750-mRNA-1:exon:5635;Parent=Msa0105750-mRNA-1 |
| chr1_3 | exon | 14357720 | 14357825 | 14357720 | ID=Msa0105750-mRNA-1:exon:5636;Parent=Msa0105750-mRNA-1 |
| chr1_3 | exon | 14357927 | 14358010 | 14357927 | ID=Msa0105750-mRNA-1:exon:5637;Parent=Msa0105750-mRNA-1 |
| chr1_3 | exon | 14358125 | 14358253 | 14358125 | ID=Msa0105750-mRNA-1:exon:5638;Parent=Msa0105750-mRNA-1 |
| chr1_3 | exon | 14358700 | 14358804 | 14358700 | ID=Msa0105750-mRNA-1:exon:5639;Parent=Msa0105750-mRNA-1 |
| chr1_3 | CDS | 14357306 | 14357379 | 14357306 | ID=Msa0105750-mRNA-1:cds;Parent=Msa0105750-mRNA-1 |
| chr1_3 | CDS | 14357720 | 14357825 | 14357720 | ID=Msa0105750-mRNA-1:cds;Parent=Msa0105750-mRNA-1 |
| chr1_3 | CDS | 14357927 | 14358010 | 14357927 | ID=Msa0105750-mRNA-1:cds;Parent=Msa0105750-mRNA-1 |
| chr1_3 | CDS | 14358125 | 14358253 | 14358125 | ID=Msa0105750-mRNA-1:cds;Parent=Msa0105750-mRNA-1 |
| chr1_3 | CDS | 14358700 | 14358804 | 14358700 | ID=Msa0105750-mRNA-1:cds;Parent=Msa0105750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
