AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070390 MtrunA17_Chr7g0252701 97.927 386 8 0 1 386 32 417 0.0 780
Msa1070390 MtrunA17_Chr6g0481411 90.674 386 36 0 1 386 40 425 0.0 733
Msa1070390 MtrunA17_Chr4g0057691 85.751 386 55 0 1 386 65 450 0.0 693
Msa1070390 MtrunA17_Chr6g0481341 75.000 164 41 0 210 373 1 164 2.66e-86 260
Msa1070390 MtrunA17_Chr4g0057711 79.618 157 29 1 99 255 6 159 8.08e-85 255
Msa1070390 MtrunA17_Chr6g0481321 62.745 153 56 1 100 252 4 155 4.02e-59 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070390 AT3G26618.1 91.192 386 34 0 1 386 32 417 0.0 733
Msa1070390 AT1G12920.1 90.415 386 37 0 1 386 31 416 0.0 733
Msa1070390 AT5G47880.2 87.306 386 49 0 1 386 33 418 0.0 710
Msa1070390 AT5G47880.1 87.306 386 49 0 1 386 33 418 0.0 710

Find 87 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATATTTGTATTGTATTT+TGG 0.129753 7_2:+66481493 None:intergenic
ACTCATTGTATGGGAGAATT+TGG 0.171668 7_2:-66478557 Msa1070390:CDS
TGCAGAGGGTTTGGTGGTAT+TGG 0.226379 7_2:-66478307 Msa1070390:CDS
CCTCCTCTACCATGTTTCTT+TGG 0.261663 7_2:+66478991 None:intergenic
TCACAAAGTAACAAATTTAA+AGG 0.289054 7_2:+66481466 None:intergenic
GTCTCGTATGGTGGGGAAAA+TGG 0.297905 7_2:-66478748 Msa1070390:CDS
GCGAATGAGTACAAAAGATT+TGG 0.305651 7_2:-66478379 Msa1070390:CDS
AAGATGTTGGGAGATGAATT+TGG 0.306796 7_2:-66479372 Msa1070390:CDS
TGCGGCCACATCTGCAGATT+TGG 0.309390 7_2:-66478437 Msa1070390:CDS
CGACCCTTCTTGAGATTTGT+TGG 0.312643 7_2:+66478336 None:intergenic
CTAGAATCTGATGACAAGTT+TGG 0.315461 7_2:-66479102 Msa1070390:CDS
CACATTGAAGGCTCTAGAAA+TGG 0.360512 7_2:-66478593 Msa1070390:CDS
ATCTGCAGATTTGGAGGTTC+AGG 0.366347 7_2:-66478428 Msa1070390:CDS
TTCTCTCAACCCTTCCTTTG+CGG 0.390176 7_2:-66481405 Msa1070390:five_prime_UTR
ATGTGGCCGCATCGCGGAAG+TGG 0.405903 7_2:+66478449 None:intergenic
AGAGGGTTTGGTGGTATTGG+AGG 0.406600 7_2:-66478304 Msa1070390:intron
GAGACTGGTAAATATGTTTA+CGG 0.407711 7_2:-66478625 Msa1070390:CDS
AGATAAAGTGATGCATTGAT+TGG 0.409138 7_2:+66479165 None:intergenic
CGGTTGAAACACTCATTGTA+TGG 0.412463 7_2:-66478567 Msa1070390:CDS
TTTATTGTTATGGATGGAAA+TGG 0.413603 7_2:-66479078 Msa1070390:CDS
ATTCAAGAGAAACGCTTGAT+AGG 0.417924 7_2:-66478673 Msa1070390:CDS
TTCCACTTAATGTCCCGAAA+AGG 0.426411 7_2:+66479052 None:intergenic
TCCACTTAATGTCCCGAAAA+GGG 0.426867 7_2:+66479053 None:intergenic
TGTAATAAAGCATTTGAAGA+AGG 0.432701 7_2:-66478491 Msa1070390:CDS
CAGACAAGAATATTGAGATA+TGG 0.434895 7_2:-66479497 Msa1070390:five_prime_UTR
ACTAGTCAGCCTAATGTTGC+TGG 0.435213 7_2:-66478868 Msa1070390:CDS
TAATGTTGCTGGACTCATAC+TGG 0.438513 7_2:-66478857 Msa1070390:CDS
AAACATATTTACCAGTCTCT+TGG 0.438527 7_2:+66478629 None:intergenic
CTGGAAGCTGCAAGAGGTAA+TGG 0.449382 7_2:-66479450 Msa1070390:five_prime_UTR
ACATCAAGAGTAGGGTAAAC+CGG 0.459780 7_2:-66479338 Msa1070390:CDS
GTATAAAGAACCAATCCATT+TGG 0.460218 7_2:+66479252 None:intergenic
TGATATAGATTAATAAAACT+TGG 0.463745 7_2:+66481517 None:intergenic
CTCAACCCTTCCTTTGCGGC+AGG 0.466093 7_2:-66481401 Msa1070390:intron
AGTATGAGTCCAGCAACATT+AGG 0.468191 7_2:+66478859 None:intergenic
TATAACAAGGTTCCTCCAAA+TGG 0.471094 7_2:-66479267 Msa1070390:CDS
ATCTCGTGTCACTAAGATGT+TGG 0.473352 7_2:-66479385 Msa1070390:CDS
CGGAGTTGATGACACATTGA+AGG 0.474084 7_2:-66478605 Msa1070390:CDS
CAAGGTTCCTCCAAATGGAT+TGG 0.477410 7_2:-66479262 Msa1070390:CDS
CTTGCCGTCCTCAGTGAGAA+TGG 0.478058 7_2:+66479224 None:intergenic
AATGGATTGGTTCTTTATAC+CGG 0.484935 7_2:-66479249 Msa1070390:CDS
TCTCGTGTCACTAAGATGTT+GGG 0.490357 7_2:-66479384 Msa1070390:CDS
ACATTAGGCTGACTAGTAGC+AGG 0.499450 7_2:+66478874 None:intergenic
CAAAAGATTTGGATGCTCGC+TGG 0.500903 7_2:-66478368 Msa1070390:CDS
ACATTGAAGGCTCTAGAAAT+GGG 0.514674 7_2:-66478592 Msa1070390:CDS
GGGAGAATTTGGATATTACT+AGG 0.521356 7_2:-66478546 Msa1070390:CDS
GTAATAAAGCATTTGAAGAA+GGG 0.522658 7_2:-66478490 Msa1070390:CDS
CCTCTGTTGAGCAGAAGTAA+TGG 0.522824 7_2:+66479299 None:intergenic
GGCCACATCTGCAGATTTGG+AGG 0.524825 7_2:-66478434 Msa1070390:CDS
GTAAACCGGCAATCAGTGCT+TGG 0.540063 7_2:-66479324 Msa1070390:CDS
CTGCTTCAAACATCAAGAGT+AGG 0.540306 7_2:-66479347 Msa1070390:CDS
TTCGCAAACCACTCAAGTAA+TGG 0.547585 7_2:+66478397 None:intergenic
GAAGAGATAAGCCAAGAGAC+TGG 0.550060 7_2:-66478640 Msa1070390:CDS
GGAAGGGTTGAGAGAAACTA+GGG 0.552703 7_2:+66481412 None:intergenic
TGAGGACGGCAAGGAAAAGA+AGG 0.553356 7_2:-66479214 Msa1070390:CDS
GTGGTTGATGTCTCGTATGG+TGG 0.555643 7_2:-66478757 Msa1070390:CDS
AGGAAGGGTTGAGAGAAACT+AGG 0.561210 7_2:+66481411 None:intergenic
AACCTCCAAATCTGCAGATG+TGG 0.562932 7_2:+66478432 None:intergenic
AGAAGATGCCATTACTTGAG+TGG 0.565327 7_2:-66478405 Msa1070390:CDS
GATGCATTGATTGGTTTGAA+AGG 0.571596 7_2:+66479174 None:intergenic
GTGACCAACAAATCTCAAGA+AGG 0.573488 7_2:-66478340 Msa1070390:CDS
TGCTTCAAACATCAAGAGTA+GGG 0.575365 7_2:-66479346 Msa1070390:CDS
TAAAGAACCAATCCATTTGG+AGG 0.576280 7_2:+66479255 None:intergenic
GTCCTCAGTGAGAATGGTAC+CGG 0.581083 7_2:+66479230 None:intergenic
TGGTTGATGTCTCGTATGGT+GGG 0.591547 7_2:-66478756 Msa1070390:CDS
CTACCAAAGAAACATGGTAG+AGG 0.592428 7_2:-66478994 Msa1070390:CDS
GTTGCTGGACTCATACTGGC+TGG 0.598808 7_2:-66478853 Msa1070390:CDS
CATTCTCACTGAGGACGGCA+AGG 0.604123 7_2:-66479223 Msa1070390:CDS
GGTTGAAACACTCATTGTAT+GGG 0.621105 7_2:-66478566 Msa1070390:CDS
AACGTGGTTGATGTCTCGTA+TGG 0.621452 7_2:-66478760 Msa1070390:CDS
CCAAAGAAACATGGTAGAGG+AGG 0.625338 7_2:-66478991 Msa1070390:CDS
TGACCAACAAATCTCAAGAA+GGG 0.625562 7_2:-66478339 Msa1070390:CDS
CCATTACTTCTGCTCAACAG+AGG 0.649740 7_2:-66479299 Msa1070390:CDS
GGTACCATTCTCACTGAGGA+CGG 0.651299 7_2:-66479228 Msa1070390:CDS
GAAGGCTCTAGAAATGGGTG+CGG 0.653960 7_2:-66478587 Msa1070390:CDS
ACACGAGATATTTGATCACG+TGG 0.654304 7_2:+66479399 None:intergenic
CATTAGGCTGACTAGTAGCA+GGG 0.656179 7_2:+66478875 None:intergenic
AAAGGACTGGAAGCTGCAAG+AGG 0.664338 7_2:-66479456 Msa1070390:five_prime_UTR
CTTTATTACAATCTCACCAG+TGG 0.665088 7_2:+66478504 None:intergenic
TCAAAGCCACTTCCGCGATG+CGG 0.668435 7_2:-66478455 Msa1070390:CDS
GAGGTTGAAACTATATAACA+AGG 0.687653 7_2:-66479280 Msa1070390:CDS
AGGGTTGATGTAAAACTGAG+TGG 0.688267 7_2:+66478894 None:intergenic
CTGCAGATGTGGCCGCATCG+CGG 0.688811 7_2:+66478443 None:intergenic
GGTTGATGTCTCGTATGGTG+GGG 0.707328 7_2:-66478755 Msa1070390:CDS
CGAGATATTTGATCACGTGG+AGG 0.714871 7_2:+66479402 None:intergenic
GTTGATCTACCAAAGAAACA+TGG 0.720655 7_2:-66479000 Msa1070390:CDS
ATTAAGTGGAAATACTCGCG+AGG 0.721816 7_2:-66479040 Msa1070390:CDS
TACCGGTACCATTCTCACTG+AGG 0.737721 7_2:-66479232 Msa1070390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATTTGTATTGTATTT+TGG + chr7_2:66478040-66478059 None:intergenic 10.0%
!!! CTGATTTTTTTTTTTTTTTT+TGG - chr7_2:66478734-66478753 Msa1070390:CDS 10.0%
!! TGATATAGATTAATAAAACT+TGG + chr7_2:66478016-66478035 None:intergenic 15.0%
!! TAAGAAATTAAAAGAGTTAA+AGG - chr7_2:66478436-66478455 Msa1070390:CDS 15.0%
!!! TTTTGAAATTGAACATTTTT+TGG - chr7_2:66478676-66478695 Msa1070390:CDS 15.0%
!! TAAAGTTTAACCATTATAAA+TGG + chr7_2:66479384-66479403 None:intergenic 15.0%
!!! AAAAGTATATGCTTAATATA+TGG - chr7_2:66479926-66479945 Msa1070390:intron 15.0%
!!! AATATATGGTTTCATTATTT+TGG - chr7_2:66479940-66479959 Msa1070390:intron 15.0%
!! TCACAAAGTAACAAATTTAA+AGG + chr7_2:66478067-66478086 None:intergenic 20.0%
!! AAATTGAGTGAACAAAATAA+TGG + chr7_2:66478212-66478231 None:intergenic 20.0%
!!! AACATTTTTTGGTTGTTTTT+AGG - chr7_2:66478687-66478706 Msa1070390:CDS 20.0%
!!! AAAATGAGAATTTTGAAGAT+GGG - chr7_2:66478710-66478729 Msa1070390:CDS 20.0%
!! TTTCTAATAGGATTGATATT+TGG - chr7_2:66478967-66478986 Msa1070390:CDS 20.0%
!! ATAAATATCATTCCATTTGT+AGG - chr7_2:66479304-66479323 Msa1070390:CDS 20.0%
!!! ATGATTTATGCCATTTATAA+TGG - chr7_2:66479371-66479390 Msa1070390:CDS 20.0%
!! ATAATGGTTAAACTTTAACT+AGG - chr7_2:66479387-66479406 Msa1070390:CDS 20.0%
!! TATATTGCAATATAGCTTAT+AGG - chr7_2:66479484-66479503 Msa1070390:five_prime_UTR 20.0%
!! ATATTGCAATATAGCTTATA+GGG - chr7_2:66479485-66479504 Msa1070390:five_prime_UTR 20.0%
!!! TTGTTTTTTGTTTGGATAAT+TGG - chr7_2:66481456-66481475 Msa1070390:five_prime_UTR 20.0%
!! ATAAAATTCAAATGATCTGT+AGG + chr7_2:66481506-66481525 None:intergenic 20.0%
!!! GTTAGTTTATATTTTGTTGC+AGG - chr7_2:66478089-66478108 Msa1070390:intron 25.0%
!!! TCTTTGATTTGATTTGTTTC+TGG - chr7_2:66478267-66478286 Msa1070390:intron 25.0%
!!! CTTTGATTTGATTTGTTTCT+GGG - chr7_2:66478268-66478287 Msa1070390:intron 25.0%
! AAATAATATAGTAACCCACT+TGG - chr7_2:66478502-66478521 Msa1070390:CDS 25.0%
!!! GAAAATGAGAATTTTGAAGA+TGG - chr7_2:66478709-66478728 Msa1070390:CDS 25.0%
!! GACTTTTTGTATCTTTACTT+TGG - chr7_2:66478925-66478944 Msa1070390:CDS 25.0%
!! TAGGATTGATATTTGGATTT+TGG - chr7_2:66478974-66478993 Msa1070390:CDS 25.0%
!!! TGGACAATACTATACTTTTT+TGG - chr7_2:66478994-66479013 Msa1070390:CDS 25.0%
!!! GGACAATACTATACTTTTTT+GGG - chr7_2:66478995-66479014 Msa1070390:CDS 25.0%
!!! GACAATACTATACTTTTTTG+GGG - chr7_2:66478996-66479015 Msa1070390:CDS 25.0%
!!! TAGTTAATTTTGTTTCCTCA+CGG - chr7_2:66479062-66479081 Msa1070390:CDS 25.0%
! TTGTTTGTGACAAGAAATTA+TGG - chr7_2:66479098-66479117 Msa1070390:CDS 25.0%
! TGTAGTATTATACCTACAAA+TGG + chr7_2:66479319-66479338 None:intergenic 25.0%
! TGTAGGTATAATACTACAAA+TGG - chr7_2:66479321-66479340 Msa1070390:CDS 25.0%
! TATTGCAATATAGCTTATAG+GGG - chr7_2:66479486-66479505 Msa1070390:five_prime_UTR 25.0%
! AATATTACTTACCAAAGCTA+AGG - chr7_2:66479818-66479837 Msa1070390:intron 25.0%
! ATATTACTTACCAAAGCTAA+GGG - chr7_2:66479819-66479838 Msa1070390:intron 25.0%
!! GGACTTATGATTTTCATTAT+AGG + chr7_2:66479897-66479916 None:intergenic 25.0%
!!! GCATATACTTTTTGTTATAC+AGG + chr7_2:66479918-66479937 None:intergenic 25.0%
!! AAGATCAAAAAGTTGATCAA+AGG - chr7_2:66480056-66480075 Msa1070390:intron 25.0%
!!! CAAGTTTGGTTTTATTGTTA+TGG - chr7_2:66480442-66480461 Msa1070390:intron 25.0%
!!! TTTGGTTTTATTGTTATGGA+TGG - chr7_2:66480446-66480465 Msa1070390:intron 25.0%
! TTTATTGTTATGGATGGAAA+TGG - chr7_2:66480452-66480471 Msa1070390:intron 25.0%
!! TGTAATAAAGCATTTGAAGA+AGG - chr7_2:66481039-66481058 Msa1070390:intron 25.0%
!! GTAATAAAGCATTTGAAGAA+GGG - chr7_2:66481040-66481059 Msa1070390:intron 25.0%
! AATCCAAATATGCACTTAAT+CGG + chr7_2:66481323-66481342 None:intergenic 25.0%
!! ATTTGGATTGACAGTTATTT+TGG - chr7_2:66481334-66481353 Msa1070390:intron 25.0%
! ACAGATGTTTAATGCATAAT+TGG + chr7_2:66481419-66481438 None:intergenic 25.0%
! AATGATCTGTAGGAAATATT+TGG + chr7_2:66481496-66481515 None:intergenic 25.0%
GAATGATGAAAACTCGTAAA+GGG + chr7_2:66478176-66478195 None:intergenic 30.0%
TGAATGATGAAAACTCGTAA+AGG + chr7_2:66478177-66478196 None:intergenic 30.0%
! GAGTGAACAAAATAATGGAA+CGG + chr7_2:66478207-66478226 None:intergenic 30.0%
GGTGTTCTGATTGAATATTA+AGG - chr7_2:66478756-66478775 Msa1070390:CDS 30.0%
! TTAAGGTTGATTGATTGAGA+TGG - chr7_2:66478773-66478792 Msa1070390:CDS 30.0%
! TAAGGTTGATTGATTGAGAT+GGG - chr7_2:66478774-66478793 Msa1070390:CDS 30.0%
!! GTGAAAGCTTGTTTTCTAAT+AGG - chr7_2:66478955-66478974 Msa1070390:CDS 30.0%
!! AGTTAATTTTGTTTCCTCAC+GGG - chr7_2:66479063-66479082 Msa1070390:CDS 30.0%
TGTCACAAACAAAATAACAG+TGG + chr7_2:66479090-66479109 None:intergenic 30.0%
TTTCCTATCATTCATGTTGA+AGG + chr7_2:66479463-66479482 None:intergenic 30.0%
GAAATAGAAATTTCAAAGCG+AGG + chr7_2:66479572-66479591 None:intergenic 30.0%
AAATTTCTATTTCATGTCCG+TGG - chr7_2:66479579-66479598 Msa1070390:intron 30.0%
! TATTAACTTTTGTTGCGCAA+TGG - chr7_2:66479690-66479709 Msa1070390:intron 30.0%
TATTACTTACCAAAGCTAAG+GGG - chr7_2:66479820-66479839 Msa1070390:intron 30.0%
TAGTCCTCTTGTGAATTTAT+AGG - chr7_2:66479860-66479879 Msa1070390:intron 30.0%
ATAGCCTATAAATTCACAAG+AGG + chr7_2:66479867-66479886 None:intergenic 30.0%
CAGACAAGAATATTGAGATA+TGG - chr7_2:66480033-66480052 Msa1070390:intron 30.0%
GAGGTTGAAACTATATAACA+AGG - chr7_2:66480250-66480269 Msa1070390:intron 30.0%
GTATAAAGAACCAATCCATT+TGG + chr7_2:66480281-66480300 None:intergenic 30.0%
!! AATGGATTGGTTCTTTATAC+CGG - chr7_2:66480281-66480300 Msa1070390:intron 30.0%
! AGATAAAGTGATGCATTGAT+TGG + chr7_2:66480368-66480387 None:intergenic 30.0%
!! AATATTTTTGCTTGCAAACG+AGG + chr7_2:66480749-66480768 None:intergenic 30.0%
AAACATATTTACCAGTCTCT+TGG + chr7_2:66480904-66480923 None:intergenic 30.0%
GAGACTGGTAAATATGTTTA+CGG - chr7_2:66480905-66480924 Msa1070390:intron 30.0%
ATTCCGATTAAGTGCATATT+TGG - chr7_2:66481317-66481336 Msa1070390:intron 30.0%
TCCAAACAAAAAACAATGAC+AGG + chr7_2:66481452-66481471 None:intergenic 30.0%
! TGAATTTTATGCTACTGAGA+TGG - chr7_2:66481516-66481535 Msa1070390:five_prime_UTR 30.0%
CGTAAAGGGTTGAATTGAAT+AGG + chr7_2:66478162-66478181 None:intergenic 35.0%
TTGTGCAAAGATTTGCATCT+AGG - chr7_2:66478300-66478319 Msa1070390:intron 35.0%
TGTGCAAAGATTTGCATCTA+GGG - chr7_2:66478301-66478320 Msa1070390:intron 35.0%
!! TCATGTGTTGACTTGAAAGT+TGG - chr7_2:66478387-66478406 Msa1070390:CDS 35.0%
!! CATGTGTTGACTTGAAAGTT+GGG - chr7_2:66478388-66478407 Msa1070390:CDS 35.0%
!! ATGTGTTGACTTGAAAGTTG+GGG - chr7_2:66478389-66478408 Msa1070390:CDS 35.0%
ATATAGTAACCCACTTGGAT+TGG - chr7_2:66478507-66478526 Msa1070390:CDS 35.0%
TTTACTGCTTCTATGAAGCA+CGG - chr7_2:66478838-66478857 Msa1070390:CDS 35.0%
GAACCTTCAACATGAATGAT+AGG - chr7_2:66479457-66479476 Msa1070390:five_prime_UTR 35.0%
ATTTCAAAGCGAGGTCAAAA+TGG + chr7_2:66479563-66479582 None:intergenic 35.0%
! TTTGGTTCAATTCACATGCA+TGG - chr7_2:66479958-66479977 Msa1070390:intron 35.0%
CTTTCTGTCTGCATAAACAA+TGG - chr7_2:66479998-66480017 Msa1070390:intron 35.0%
ATTCTTGTCTGATTCACCAT+CGG + chr7_2:66480024-66480043 None:intergenic 35.0%
! CAAAAAGTTGATCAAAGGAC+TGG - chr7_2:66480061-66480080 Msa1070390:intron 35.0%
AAGATGTTGGGAGATGAATT+TGG - chr7_2:66480158-66480177 Msa1070390:intron 35.0%
TGCTTCAAACATCAAGAGTA+GGG - chr7_2:66480184-66480203 Msa1070390:intron 35.0%
TATAACAAGGTTCCTCCAAA+TGG - chr7_2:66480263-66480282 Msa1070390:intron 35.0%
TAAAGAACCAATCCATTTGG+AGG + chr7_2:66480278-66480297 None:intergenic 35.0%
!! GATGCATTGATTGGTTTGAA+AGG + chr7_2:66480359-66480378 None:intergenic 35.0%
CTAGAATCTGATGACAAGTT+TGG - chr7_2:66480428-66480447 Msa1070390:intron 35.0%
GTTGATCTACCAAAGAAACA+TGG - chr7_2:66480530-66480549 Msa1070390:intron 35.0%
!!! AATTGTGTCGTTTTTCCATC+CGG + chr7_2:66480592-66480611 None:intergenic 35.0%
AAAAACGACACAATTACGTC+AGG - chr7_2:66480597-66480616 Msa1070390:intron 35.0%
GCAAGCAAAAATATTGAACG+TGG - chr7_2:66480754-66480773 Msa1070390:intron 35.0%
ATTCAAGAGAAACGCTTGAT+AGG - chr7_2:66480857-66480876 Msa1070390:intron 35.0%
!! ACATTGAAGGCTCTAGAAAT+GGG - chr7_2:66480938-66480957 Msa1070390:intron 35.0%
GGTTGAAACACTCATTGTAT+GGG - chr7_2:66480964-66480983 Msa1070390:intron 35.0%
ACTCATTGTATGGGAGAATT+TGG - chr7_2:66480973-66480992 Msa1070390:intron 35.0%
GGGAGAATTTGGATATTACT+AGG - chr7_2:66480984-66481003 Msa1070390:intron 35.0%
CTTTATTACAATCTCACCAG+TGG + chr7_2:66481029-66481048 None:intergenic 35.0%
GCGAATGAGTACAAAAGATT+TGG - chr7_2:66481151-66481170 Msa1070390:intron 35.0%
TGACCAACAAATCTCAAGAA+GGG - chr7_2:66481191-66481210 Msa1070390:intron 35.0%
! GATGAGTTATCTGATGATGA+TGG - chr7_2:66481283-66481302 Msa1070390:intron 35.0%
!!! GCCTGTCATTGTTTTTTGTT+TGG - chr7_2:66481448-66481467 Msa1070390:five_prime_UTR 35.0%
! TTGACTTGAAAGTTGGGGTA+TGG - chr7_2:66478394-66478413 Msa1070390:CDS 40.0%
TGACTTGAAAGTTGGGGTAT+GGG - chr7_2:66478395-66478414 Msa1070390:CDS 40.0%
AAGGTTTAGCGTTCGAATCA+TGG - chr7_2:66478455-66478474 Msa1070390:CDS 40.0%
AAGGTCTCAGGTTTGATTCT+CGG - chr7_2:66478571-66478590 Msa1070390:CDS 40.0%
CAAACTAATCCCACCGAAAT+TGG + chr7_2:66478602-66478621 None:intergenic 40.0%
!! CAATTTCGGTGGGATTAGTT+TGG - chr7_2:66478600-66478619 Msa1070390:CDS 40.0%
TAAGTCTAGTCGCTAAGTCT+AGG - chr7_2:66479275-66479294 Msa1070390:CDS 40.0%
TATAGCTTATAGGGGACTAG+AGG - chr7_2:66479494-66479513 Msa1070390:five_prime_UTR 40.0%
!! AGCTGTTTTCAAAGAGACCA+CGG + chr7_2:66479599-66479618 None:intergenic 40.0%
GAAAAACAACCCCTTAGCTT+TGG + chr7_2:66479832-66479851 None:intergenic 40.0%
!! CACATGCATGGTTTGTTTGT+AGG - chr7_2:66479970-66479989 Msa1070390:intron 40.0%
ACACGAGATATTTGATCACG+TGG + chr7_2:66480134-66480153 None:intergenic 40.0%
! ATCTCGTGTCACTAAGATGT+TGG - chr7_2:66480145-66480164 Msa1070390:intron 40.0%
! TCTCGTGTCACTAAGATGTT+GGG - chr7_2:66480146-66480165 Msa1070390:intron 40.0%
CTGCTTCAAACATCAAGAGT+AGG - chr7_2:66480183-66480202 Msa1070390:intron 40.0%
ACATCAAGAGTAGGGTAAAC+CGG - chr7_2:66480192-66480211 Msa1070390:intron 40.0%
! GATGGAAATGGAACCCTTTT+CGG - chr7_2:66480464-66480483 Msa1070390:intron 40.0%
! ATGGAAATGGAACCCTTTTC+GGG - chr7_2:66480465-66480484 Msa1070390:intron 40.0%
TCCACTTAATGTCCCGAAAA+GGG + chr7_2:66480480-66480499 None:intergenic 40.0%
TTCCACTTAATGTCCCGAAA+AGG + chr7_2:66480481-66480500 None:intergenic 40.0%
ATTAAGTGGAAATACTCGCG+AGG - chr7_2:66480490-66480509 Msa1070390:intron 40.0%
CTACCAAAGAAACATGGTAG+AGG - chr7_2:66480536-66480555 Msa1070390:intron 40.0%
!! AGGGTTGATGTAAAACTGAG+TGG + chr7_2:66480639-66480658 None:intergenic 40.0%
AGTATGAGTCCAGCAACATT+AGG + chr7_2:66480674-66480693 None:intergenic 40.0%
TAATGTTGCTGGACTCATAC+TGG - chr7_2:66480673-66480692 Msa1070390:intron 40.0%
!! CACATTGAAGGCTCTAGAAA+TGG - chr7_2:66480937-66480956 Msa1070390:intron 40.0%
CGGTTGAAACACTCATTGTA+TGG - chr7_2:66480963-66480982 Msa1070390:intron 40.0%
AGAAGATGCCATTACTTGAG+TGG - chr7_2:66481125-66481144 Msa1070390:intron 40.0%
TTCGCAAACCACTCAAGTAA+TGG + chr7_2:66481136-66481155 None:intergenic 40.0%
GTGACCAACAAATCTCAAGA+AGG - chr7_2:66481190-66481209 Msa1070390:intron 40.0%
CGAATGATCTGATATCAAGC+TGG + chr7_2:66481264-66481283 None:intergenic 40.0%
GTGAATTTGACAAATTCCCG+AGG + chr7_2:66481389-66481408 None:intergenic 40.0%
GGAAGGGTTGAGAGAAACTA+GGG + chr7_2:66478121-66478140 None:intergenic 45.0%
AGGAAGGGTTGAGAGAAACT+AGG + chr7_2:66478122-66478141 None:intergenic 45.0%
TTCTCTCAACCCTTCCTTTG+CGG - chr7_2:66478125-66478144 Msa1070390:intron 45.0%
! TTTTACCTGCCGCAAAGGAA+GGG + chr7_2:66478137-66478156 None:intergenic 45.0%
! ATTTTACCTGCCGCAAAGGA+AGG + chr7_2:66478138-66478157 None:intergenic 45.0%
! AGGAATTTTACCTGCCGCAA+AGG + chr7_2:66478142-66478161 None:intergenic 45.0%
ACCATCAGACCAATCCAAGT+GGG + chr7_2:66478519-66478538 None:intergenic 45.0%
!! TTGGATTGGTCTGATGGTGT+TGG - chr7_2:66478521-66478540 Msa1070390:CDS 45.0%
GTTGGAGTATGCTACTCTCA+AGG - chr7_2:66478552-66478571 Msa1070390:CDS 45.0%
TATGCTACTCTCAAGGTCTC+AGG - chr7_2:66478559-66478578 Msa1070390:CDS 45.0%
! ATTCTCGGTGGTGCCAATTT+CGG - chr7_2:66478586-66478605 Msa1070390:CDS 45.0%
AAAATAACAGTGGTCCCGTG+AGG + chr7_2:66479080-66479099 None:intergenic 45.0%
! AATTGAAGCCTTTTCCCACC+AGG + chr7_2:66479151-66479170 None:intergenic 45.0%
GACGATGGATGACAACTGAA+AGG + chr7_2:66479420-66479439 None:intergenic 45.0%
ATCCATCGTCTACCACTCAT+TGG - chr7_2:66479430-66479449 Msa1070390:exon 45.0%
AACCAATGAGTGGTAGACGA+TGG + chr7_2:66479435-66479454 None:intergenic 45.0%
GAAGGTTCGAAACCAATGAG+TGG + chr7_2:66479445-66479464 None:intergenic 45.0%
ACTAAATGCCTCGAGTAGAG+AGG - chr7_2:66479660-66479679 Msa1070390:intron 45.0%
TCTGCATAAACAATGGCCGA+TGG - chr7_2:66480005-66480024 Msa1070390:intron 45.0%
CGAGATATTTGATCACGTGG+AGG + chr7_2:66480131-66480150 None:intergenic 45.0%
CCTCTGTTGAGCAGAAGTAA+TGG + chr7_2:66480234-66480253 None:intergenic 45.0%
CCATTACTTCTGCTCAACAG+AGG - chr7_2:66480231-66480250 Msa1070390:intron 45.0%
CAAGGTTCCTCCAAATGGAT+TGG - chr7_2:66480268-66480287 Msa1070390:intron 45.0%
!! ACCCTTTTCGGGACATTAAG+TGG - chr7_2:66480476-66480495 Msa1070390:intron 45.0%
CCTCCTCTACCATGTTTCTT+TGG + chr7_2:66480542-66480561 None:intergenic 45.0%
CCAAAGAAACATGGTAGAGG+AGG - chr7_2:66480539-66480558 Msa1070390:intron 45.0%
CATTAGGCTGACTAGTAGCA+GGG + chr7_2:66480658-66480677 None:intergenic 45.0%
ACATTAGGCTGACTAGTAGC+AGG + chr7_2:66480659-66480678 None:intergenic 45.0%
ACTAGTCAGCCTAATGTTGC+TGG - chr7_2:66480662-66480681 Msa1070390:intron 45.0%
! AACGTGGTTGATGTCTCGTA+TGG - chr7_2:66480770-66480789 Msa1070390:intron 45.0%
! TGGTTGATGTCTCGTATGGT+GGG - chr7_2:66480774-66480793 Msa1070390:intron 45.0%
GAAGAGATAAGCCAAGAGAC+TGG - chr7_2:66480890-66480909 Msa1070390:intron 45.0%
!! CGGAGTTGATGACACATTGA+AGG - chr7_2:66480925-66480944 Msa1070390:intron 45.0%
GTGCTGAAAAATGCTACCAC+TGG - chr7_2:66481010-66481029 Msa1070390:intron 45.0%
AACCTCCAAATCTGCAGATG+TGG + chr7_2:66481101-66481120 None:intergenic 45.0%
ATCTGCAGATTTGGAGGTTC+AGG - chr7_2:66481102-66481121 Msa1070390:intron 45.0%
CAAAAGATTTGGATGCTCGC+TGG - chr7_2:66481162-66481181 Msa1070390:intron 45.0%
CGACCCTTCTTGAGATTTGT+TGG + chr7_2:66481197-66481216 None:intergenic 45.0%
!! TGATGATGATGGAGTGTACG+AGG - chr7_2:66481294-66481313 Msa1070390:intron 45.0%
ACCAGTGTCCCACAAAATCA+TGG - chr7_2:66481361-66481380 Msa1070390:intron 45.0%
! ACCATGATTTTGTGGGACAC+TGG + chr7_2:66481365-66481384 None:intergenic 45.0%
!!! TGATTTTTTTTTTTTTTTTT+GGG - chr7_2:66478735-66478754 Msa1070390:CDS 5.0%
TGGGGTATGGGTAGCTTACT+TGG - chr7_2:66478407-66478426 Msa1070390:CDS 50.0%
!! ACCCACTTGGATTGGTCTGA+TGG - chr7_2:66478515-66478534 Msa1070390:CDS 50.0%
CACCATCAGACCAATCCAAG+TGG + chr7_2:66478520-66478539 None:intergenic 50.0%
!! TTGGTCTGATGGTGTTGGCT+TGG - chr7_2:66478526-66478545 Msa1070390:CDS 50.0%
!! TGGTCTGATGGTGTTGGCTT+GGG - chr7_2:66478527-66478546 Msa1070390:CDS 50.0%
GTCTCAGGTTTGATTCTCGG+TGG - chr7_2:66478574-66478593 Msa1070390:CDS 50.0%
ATCCATGTAGCCAATGCACC+TGG - chr7_2:66479130-66479149 Msa1070390:CDS 50.0%
ATGTAGCCAATGCACCTGGT+GGG - chr7_2:66479134-66479153 Msa1070390:CDS 50.0%
AAAGGACTGGAAGCTGCAAG+AGG - chr7_2:66480074-66480093 Msa1070390:intron 50.0%
CTGGAAGCTGCAAGAGGTAA+TGG - chr7_2:66480080-66480099 Msa1070390:intron 50.0%
GTAAACCGGCAATCAGTGCT+TGG - chr7_2:66480206-66480225 Msa1070390:intron 50.0%
TACCGGTACCATTCTCACTG+AGG - chr7_2:66480298-66480317 Msa1070390:intron 50.0%
GTCCTCAGTGAGAATGGTAC+CGG + chr7_2:66480303-66480322 None:intergenic 50.0%
GGTACCATTCTCACTGAGGA+CGG - chr7_2:66480302-66480321 Msa1070390:intron 50.0%
TGAGGACGGCAAGGAAAAGA+AGG - chr7_2:66480316-66480335 Msa1070390:intron 50.0%
! CTTTGCGTTTTGCTCGTCTC+CGG - chr7_2:66480570-66480589 Msa1070390:intron 50.0%
! GTGGTTGATGTCTCGTATGG+TGG - chr7_2:66480773-66480792 Msa1070390:intron 50.0%
! GGTTGATGTCTCGTATGGTG+GGG - chr7_2:66480775-66480794 Msa1070390:intron 50.0%
! GTCTCGTATGGTGGGGAAAA+TGG - chr7_2:66480782-66480801 Msa1070390:intron 50.0%
!! GAAGGCTCTAGAAATGGGTG+CGG - chr7_2:66480943-66480962 Msa1070390:intron 50.0%
! AAGGGTCGCAGTTTTGCAGA+GGG - chr7_2:66481209-66481228 Msa1070390:intron 50.0%
! TCGCAGTTTTGCAGAGGGTT+TGG - chr7_2:66481214-66481233 Msa1070390:intron 50.0%
! CAGTTTTGCAGAGGGTTTGG+TGG - chr7_2:66481217-66481236 Msa1070390:intron 50.0%
!! TGCAGAGGGTTTGGTGGTAT+TGG - chr7_2:66481223-66481242 Msa1070390:intron 50.0%
!! AGAGGGTTTGGTGGTATTGG+AGG - chr7_2:66481226-66481245 Msa1070390:intron 50.0%
!! CCGAGGCACCATGATTTTGT+GGG + chr7_2:66481372-66481391 None:intergenic 50.0%
CCCACAAAATCATGGTGCCT+CGG - chr7_2:66481369-66481388 Msa1070390:intron 50.0%
CCACAAAATCATGGTGCCTC+GGG - chr7_2:66481370-66481389 Msa1070390:intron 50.0%
!! ATGGTGTTGGCTTGGGACGT+TGG - chr7_2:66478534-66478553 Msa1070390:CDS 55.0%
! TCGGTGGTGCCAATTTCGGT+GGG - chr7_2:66478590-66478609 Msa1070390:CDS 55.0%
!! CACCAGGTGCATTGGCTACA+TGG + chr7_2:66479135-66479154 None:intergenic 55.0%
CATGTAGCCAATGCACCTGG+TGG - chr7_2:66479133-66479152 Msa1070390:CDS 55.0%
! CCTTTTCCCACCAGGTGCAT+TGG + chr7_2:66479143-66479162 None:intergenic 55.0%
CCAATGCACCTGGTGGGAAA+AGG - chr7_2:66479140-66479159 Msa1070390:CDS 55.0%
ACCAAGTGCCTCTCTACTCG+AGG + chr7_2:66479671-66479690 None:intergenic 55.0%
!! TGGCTCCAAGCACTGATTGC+CGG + chr7_2:66480214-66480233 None:intergenic 55.0%
CTTGCCGTCCTCAGTGAGAA+TGG + chr7_2:66480309-66480328 None:intergenic 55.0%
CATTCTCACTGAGGACGGCA+AGG - chr7_2:66480307-66480326 Msa1070390:intron 55.0%
GTTGCTGGACTCATACTGGC+TGG - chr7_2:66480677-66480696 Msa1070390:intron 55.0%
TCAAAGCCACTTCCGCGATG+CGG - chr7_2:66481075-66481094 Msa1070390:intron 55.0%
TGCGGCCACATCTGCAGATT+TGG - chr7_2:66481093-66481112 Msa1070390:intron 55.0%
GGCCACATCTGCAGATTTGG+AGG - chr7_2:66481096-66481115 Msa1070390:intron 55.0%
! GAAGGGTCGCAGTTTTGCAG+AGG - chr7_2:66481208-66481227 Msa1070390:intron 55.0%
!! CCCGAGGCACCATGATTTTG+TGG + chr7_2:66481373-66481392 None:intergenic 55.0%
CTCAACCCTTCCTTTGCGGC+AGG - chr7_2:66478129-66478148 Msa1070390:intron 60.0%
! CTCGGTGGTGCCAATTTCGG+TGG - chr7_2:66478589-66478608 Msa1070390:CDS 60.0%
!! GCCTCGAGTAGAGAGGCACT+TGG - chr7_2:66479667-66479686 Msa1070390:intron 60.0%
! GCGTTTTGCTCGTCTCCGGA+TGG - chr7_2:66480574-66480593 Msa1070390:intron 60.0%
ATGTGGCCGCATCGCGGAAG+TGG + chr7_2:66481084-66481103 None:intergenic 65.0%
CTGCAGATGTGGCCGCATCG+CGG + chr7_2:66481090-66481109 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 66478008 66481544 66478008 ID=Msa1070390;Name=Msa1070390
chr7_2 mRNA 66478008 66481544 66478008 ID=Msa1070390-mRNA-1;Parent=Msa1070390;Name=Msa1070390-mRNA-1;_AED=0.11;_eAED=0.18;_QI=217|0|0.33|1|0.5|0.66|3|0|390
chr7_2 exon 66478008 66478042 66478008 ID=Msa1070390-mRNA-1:exon:14251;Parent=Msa1070390-mRNA-1
chr7_2 exon 66478305 66479516 66478305 ID=Msa1070390-mRNA-1:exon:14250;Parent=Msa1070390-mRNA-1
chr7_2 exon 66481402 66481544 66481402 ID=Msa1070390-mRNA-1:exon:14249;Parent=Msa1070390-mRNA-1
chr7_2 five_prime_UTR 66481402 66481544 66481402 ID=Msa1070390-mRNA-1:five_prime_utr;Parent=Msa1070390-mRNA-1
chr7_2 five_prime_UTR 66479443 66479516 66479443 ID=Msa1070390-mRNA-1:five_prime_utr;Parent=Msa1070390-mRNA-1
chr7_2 CDS 66478305 66479442 66478305 ID=Msa1070390-mRNA-1:cds;Parent=Msa1070390-mRNA-1
chr7_2 CDS 66478008 66478042 66478008 ID=Msa1070390-mRNA-1:cds;Parent=Msa1070390-mRNA-1
Gene Sequence

>Msa1070390

ATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAGAGTAGGGTAAACCGGCAATCAGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTTCTTTATACCGGTACCATTCTCACTGAGGACGGCAAGGAAAAGAAGGTGACATTTGATTTTGAACCTTTCAAACCAATCAATGCATCACTTTATCTCTGCGACAACAAATTTCACACAGAAGCTCTAAATGAACTTCTAGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTCGGGACATTAAGTGGAAATACTCGCGAGGTGCTTCATAAATTTACTGTTGATCTACCAAAGAAACATGGTAGAGGAGGACAGTCAGCTTTGCGTTTTGCTCGTCTCCGGATGGAAAAACGACACAATTACGTCAGGAAGACTGCAGAACTTGCCACTCAGTTTTACATCAACCCTGCTACTAGTCAGCCTAATGTTGCTGGACTCATACTGGCTGGTTCAGCTGATTTCAAGACTGAGCTGAGTCAATCAGATATGTTTGATCCTCGTTTGCAAGCAAAAATATTGAACGTGGTTGATGTCTCGTATGGTGGGGAAAATGGCTTTAATCAAGCTATTGAATTATCTGCAGAGATTCTATCTAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGAAAATACTTTGAAGAGATAAGCCAAGAGACTGGTAAATATGTTTACGGAGTTGATGACACATTGAAGGCTCTAGAAATGGGTGCGGTTGAAACACTCATTGTATGGGAGAATTTGGATATTACTAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGGACAAGAAAGTGATCAAAGCCACTTCCGCGATGCGGCCACATCTGCAGATTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCGAATGAGTACAAAAGATTTGGATGCTCGCTGGAATTCGTGACCAACAAATCTCAAGAAGGGTCGCAGTTTTGCAGAGGGTTTGGTGGTATTGGAGATCATTTGAATTTTATGCTACTGAGATGGTACTGA

Protein sequence

>Msa1070390

MISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTEDGKEKKVTFDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDITRYVLKNATTGEIVIKHLKKGQESDQSHFRDAATSADLEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGDHLNFMLLRWY*