AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407760 MtrunA17_Chr8g0382221 100.000 207 0 0 1 207 1 207 2.19e-155 428
Msa1407760 MtrunA17_Chr3g0123971 93.720 207 12 1 1 207 1 206 7.88e-143 396
Msa1407760 MtrunA17_Chr5g0400131 84.058 207 33 0 1 207 1 207 1.02e-130 365
Msa1407760 MtrunA17_Chr4g0055081 84.541 207 31 1 1 207 1 206 2.07e-130 365
Msa1407760 MtrunA17_Chr1g0199331 47.561 164 85 1 9 171 31 194 4.94e-51 163
Msa1407760 MtrunA17_Chr5g0433561 44.099 161 90 0 11 171 12 172 2.99e-49 159
Msa1407760 MtrunA17_Chr3g0109721 43.478 161 91 0 11 171 12 172 4.05e-48 156
Msa1407760 MtrunA17_Chr8g0390561 44.720 161 89 0 11 171 11 171 5.57e-47 153
Msa1407760 MtrunA17_Chr8g0349711 44.099 161 90 0 10 170 7 167 1.91e-46 152
Msa1407760 MtrunA17_Chr4g0032201 36.408 206 118 3 10 206 13 214 2.19e-45 149
Msa1407760 MtrunA17_Chr2g0276931 39.267 191 113 1 10 197 10 200 4.42e-45 148
Msa1407760 MtrunA17_Chr8g0349681 44.720 161 89 0 10 170 176 336 1.58e-44 155
Msa1407760 MtrunA17_Chr8g0349681 41.358 162 95 0 10 171 14 175 7.00e-41 146
Msa1407760 MtrunA17_Chr8g0349681 42.857 161 92 0 10 170 385 545 9.89e-41 145
Msa1407760 MtrunA17_Chr8g0351861 38.509 161 99 0 10 170 17 177 1.48e-43 145
Msa1407760 MtrunA17_Chr7g0250531 38.000 200 114 2 10 206 9 201 2.22e-43 144
Msa1407760 MtrunA17_Chr2g0290891 38.509 161 99 0 10 170 7 167 3.09e-43 144
Msa1407760 MtrunA17_Chr6g0458081 39.130 161 98 0 10 170 7 167 4.76e-43 143
Msa1407760 MtrunA17_Chr4g0055651 37.056 197 120 1 10 206 9 201 5.87e-43 143
Msa1407760 MtrunA17_Chr3g0123821 34.848 198 113 2 10 207 17 198 1.28e-42 142
Msa1407760 MtrunA17_Chr3g0112681 34.466 206 123 2 10 206 13 215 2.41e-42 142
Msa1407760 MtrunA17_Chr7g0234201 36.139 202 124 2 10 207 14 214 2.42e-42 142
Msa1407760 MtrunA17_Chr2g0276941 39.355 155 94 0 10 164 16 170 4.63e-42 141
Msa1407760 MtrunA17_Chr8g0335471 37.313 201 115 3 10 206 9 202 5.26e-42 140
Msa1407760 MtrunA17_Chr8g0346421 41.401 157 92 0 10 166 27 183 8.34e-42 141
Msa1407760 MtrunA17_Chr1g0212521 37.879 198 119 3 11 205 17 213 1.03e-41 140
Msa1407760 MtrunA17_Chr1g0174281 33.333 207 127 1 10 205 16 222 1.13e-41 140
Msa1407760 MtrunA17_Chr8g0381841 38.961 154 94 0 10 163 18 171 1.30e-41 140
Msa1407760 MtrunA17_Chr7g0231131 34.715 193 112 1 10 202 16 194 1.93e-41 140
Msa1407760 MtrunA17_Chr4g0030911 38.191 199 117 4 11 205 17 213 2.18e-41 139
Msa1407760 MtrunA17_Chr1g0182321 38.071 197 113 3 11 206 17 205 4.05e-41 139
Msa1407760 MtrunA17_Chr7g0214241 34.975 203 127 2 10 207 16 218 4.93e-41 139
Msa1407760 MtrunA17_Chr6g0482721 37.288 177 109 1 10 186 13 187 6.10e-41 138
Msa1407760 MtrunA17_Chr1g0182301 38.071 197 113 3 11 206 17 205 7.33e-41 138
Msa1407760 MtrunA17_Chr7g0263071 43.038 158 89 1 11 167 17 174 8.16e-41 138
Msa1407760 MtrunA17_Chr7g0275991 38.182 165 98 1 6 166 13 177 2.05e-40 137
Msa1407760 MtrunA17_Chr4g0046261 36.306 157 100 0 10 166 14 170 8.09e-40 135
Msa1407760 MtrunA17_Chr1g0189361 38.217 157 97 0 10 166 15 171 8.42e-40 135
Msa1407760 MtrunA17_Chr2g0315551 35.669 157 101 0 10 166 14 170 1.21e-39 135
Msa1407760 MtrunA17_Chr4g0040781 32.124 193 113 1 10 184 14 206 6.21e-39 133
Msa1407760 MtrunA17_Chr2g0283131 36.306 157 100 0 10 166 14 170 8.31e-39 133
Msa1407760 MtrunA17_Chr2g0327911 40.881 159 92 2 11 167 17 175 1.50e-38 132
Msa1407760 MtrunA17_Chr4g0034871 39.024 205 109 6 11 207 10 206 1.72e-38 132
Msa1407760 MtrunA17_Chr2g0319951 34.783 161 105 0 10 170 14 174 2.51e-38 131
Msa1407760 MtrunA17_Chr2g0325091 35.057 174 113 0 10 183 12 185 4.14e-38 131
Msa1407760 MtrunA17_Chr4g0004661 39.216 204 111 4 11 207 66 263 9.48e-38 131
Msa1407760 MtrunA17_Chr2g0331691 38.235 204 113 4 11 207 12 209 7.93e-37 127
Msa1407760 MtrunA17_Chr1g0180291 37.313 201 116 5 10 205 15 210 1.61e-36 127
Msa1407760 MtrunA17_Chr6g0466301 36.538 208 110 6 11 207 10 206 7.57e-36 125
Msa1407760 MtrunA17_Chr6g0465491 36.538 208 110 6 11 207 10 206 7.57e-36 125
Msa1407760 MtrunA17_Chr1g0201121 35.784 204 118 5 11 207 10 207 7.77e-36 125
Msa1407760 MtrunA17_Chr8g0392931 34.375 192 120 2 10 200 15 201 9.65e-36 125
Msa1407760 MtrunA17_Chr8g0383261 33.824 204 120 4 11 207 14 209 1.12e-35 124
Msa1407760 MtrunA17_Chr8g0384311 40.881 159 91 3 10 166 14 171 1.28e-35 124
Msa1407760 MtrunA17_Chr7g0265001 34.483 203 122 4 10 206 17 214 1.48e-34 122
Msa1407760 MtrunA17_Chr1g0197331 37.500 200 119 5 10 206 16 212 2.65e-34 121
Msa1407760 MtrunA17_Chr3g0130271 40.000 160 92 4 10 166 13 171 1.61e-32 116
Msa1407760 MtrunA17_Chr1g0159481 37.736 159 96 3 10 166 18 175 4.99e-32 115
Msa1407760 MtrunA17_Chr3g0138101 32.143 168 111 3 10 177 14 178 8.30e-24 94.4
Msa1407760 MtrunA17_Chr3g0138121 32.143 168 111 3 10 177 14 178 8.39e-24 94.4
Msa1407760 MtrunA17_Chr3g0138111 32.143 168 111 3 10 177 14 178 8.48e-24 94.4
Msa1407760 MtrunA17_Chr3g0117931 36.970 165 90 5 11 163 10 172 3.44e-23 92.4
Msa1407760 MtrunA17_Chr2g0325101 34.545 165 94 5 11 163 8 170 2.34e-21 87.4
Msa1407760 MtrunA17_Chr6g0486041 35.152 165 93 5 11 163 8 170 4.96e-21 86.7
Msa1407760 MtrunA17_Chr6g0466161 28.571 189 120 4 26 207 7 187 1.14e-20 85.9
Msa1407760 MtrunA17_Chr6g0465471 28.042 189 121 4 26 207 7 187 6.15e-20 84.0
Msa1407760 MtrunA17_Chr4g0037021 32.121 165 98 5 11 163 8 170 1.98e-19 82.0
Msa1407760 MtrunA17_Chr4g0046211 36.154 130 80 3 11 139 8 135 3.21e-19 80.5
Msa1407760 MtrunA17_Chr8g0371501 31.515 165 99 5 11 163 8 170 8.67e-19 80.5
Msa1407760 MtrunA17_Chr5g0405791 31.515 165 99 5 11 163 8 170 9.04e-19 80.5
Msa1407760 MtrunA17_Chr6g0466431 38.542 96 50 1 11 106 10 96 5.34e-18 75.9
Msa1407760 MtrunA17_Chr6g0465611 38.542 96 50 1 11 106 10 96 5.34e-18 75.9
Msa1407760 MtrunA17_Chr5g0443631 24.561 171 123 3 5 170 100 269 2.08e-13 67.4
Msa1407760 MtrunA17_Chr1g0178291 32.051 156 97 4 12 166 431 578 6.54e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407760 AT2G22290.1 87.923 207 25 0 1 207 1 207 1.12e-137 384
Msa1407760 AT5G10260.1 87.923 207 25 0 1 207 1 207 1.41e-137 383
Msa1407760 AT2G44610.1 85.096 208 30 1 1 207 1 208 1.19e-131 369
Msa1407760 AT4G39890.1 78.505 214 39 3 1 207 1 214 4.25e-117 332
Msa1407760 AT5G64990.1 77.387 199 44 1 10 207 8 206 1.62e-109 312
Msa1407760 AT5G64990.2 74.757 206 44 2 10 207 8 213 9.51e-107 306
Msa1407760 AT3G54840.1 47.561 164 85 1 9 171 33 196 1.94e-50 162
Msa1407760 AT3G54840.3 47.826 161 83 1 12 171 2 162 1.36e-49 159
Msa1407760 AT4G19640.1 40.323 186 111 0 11 196 12 197 2.76e-49 159
Msa1407760 AT5G45130.1 44.099 161 90 0 11 171 12 172 3.95e-49 159
Msa1407760 AT3G54840.2 48.077 156 80 1 9 163 33 188 2.78e-48 157
Msa1407760 AT5G45130.2 41.477 176 101 1 13 188 22 195 3.97e-47 154
Msa1407760 AT3G11730.1 39.000 200 112 3 10 205 9 202 2.11e-44 147
Msa1407760 AT4G17170.1 34.483 203 126 2 10 205 7 209 2.53e-44 147
Msa1407760 AT4G17160.1 34.146 205 121 2 9 205 6 204 8.34e-44 145
Msa1407760 AT1G09630.1 40.252 159 95 0 10 168 13 171 9.56e-44 145
Msa1407760 AT1G07410.1 39.752 161 97 0 10 170 13 173 1.40e-43 145
Msa1407760 AT1G05810.1 36.634 202 124 2 10 207 13 214 2.21e-43 145
Msa1407760 AT2G31680.1 36.946 203 123 2 10 207 13 215 5.77e-43 144
Msa1407760 AT1G05810.2 36.634 202 124 2 10 207 59 260 6.69e-43 145
Msa1407760 AT4G35860.1 34.975 203 125 3 10 205 7 209 7.74e-43 143
Msa1407760 AT5G59150.1 39.490 157 95 0 10 166 13 169 1.99e-42 142
Msa1407760 AT5G65270.1 37.580 157 98 0 10 166 18 174 2.13e-42 142
Msa1407760 AT1G02130.1 37.000 200 117 3 10 206 9 202 3.06e-42 141
Msa1407760 AT3G46830.1 38.854 157 96 0 10 166 13 169 4.44e-42 141
Msa1407760 AT3G46830.2 38.854 157 96 0 10 166 13 169 4.44e-42 141
Msa1407760 AT3G12160.1 37.438 203 120 3 10 205 16 218 1.50e-41 140
Msa1407760 AT4G17530.1 36.683 199 118 2 10 206 9 201 1.73e-41 139
Msa1407760 AT5G47520.1 35.437 206 124 4 10 206 15 220 1.87e-41 140
Msa1407760 AT4G39990.1 36.025 161 103 0 10 170 18 178 1.99e-41 140
Msa1407760 AT3G07410.1 42.208 154 89 0 10 163 13 166 2.22e-41 140
Msa1407760 AT2G43130.1 35.500 200 124 2 10 205 13 211 2.32e-41 139
Msa1407760 AT5G47960.1 34.804 204 125 2 10 205 16 219 3.22e-41 139
Msa1407760 AT3G53610.2 38.579 197 112 3 11 206 17 205 3.25e-41 139
Msa1407760 AT3G53610.3 38.579 197 112 3 11 206 17 205 3.25e-41 139
Msa1407760 AT3G53610.1 38.579 197 112 3 11 206 17 205 3.25e-41 139
Msa1407760 AT5G47200.1 36.683 199 118 2 10 206 9 201 3.86e-41 139
Msa1407760 AT5G59840.1 39.286 196 109 4 11 204 17 204 4.17e-41 139
Msa1407760 AT3G46060.2 39.487 195 108 4 11 203 17 203 5.53e-41 139
Msa1407760 AT3G46060.3 39.487 195 108 4 11 203 17 203 5.53e-41 139
Msa1407760 AT3G46060.1 39.487 195 108 4 11 203 17 203 5.53e-41 139
Msa1407760 AT1G18200.1 40.909 154 91 0 10 163 14 167 8.24e-41 139
Msa1407760 AT5G03520.1 39.394 198 118 2 11 206 17 214 9.69e-41 138
Msa1407760 AT3G15060.1 36.646 161 102 0 10 170 14 174 2.41e-40 137
Msa1407760 AT5G60860.1 33.161 193 111 1 10 184 14 206 6.80e-40 136
Msa1407760 AT4G18430.1 33.163 196 113 1 10 187 14 209 9.71e-40 135
Msa1407760 AT1G73640.1 38.961 154 94 0 10 163 14 167 2.04e-39 135
Msa1407760 AT3G18820.1 39.512 205 108 6 11 207 10 206 6.56e-39 133
Msa1407760 AT1G28550.1 37.580 157 98 0 10 166 14 170 7.03e-39 133
Msa1407760 AT1G16920.1 35.032 157 102 0 10 166 14 170 1.04e-38 133
Msa1407760 AT4G19640.2 44.444 126 70 0 11 136 12 137 2.82e-38 129
Msa1407760 AT3G09900.1 39.409 203 113 3 11 206 17 216 4.63e-38 131
Msa1407760 AT1G52280.1 39.216 204 110 4 11 207 10 206 4.67e-38 131
Msa1407760 AT1G01200.1 35.714 210 122 5 10 207 29 237 5.31e-38 132
Msa1407760 AT5G45750.1 31.579 209 124 5 10 206 14 215 1.16e-37 130
Msa1407760 AT1G06400.1 36.306 157 100 0 10 166 14 170 1.35e-37 130
Msa1407760 AT4G19640.3 43.066 137 74 1 11 147 12 144 1.63e-37 129
Msa1407760 AT2G33870.1 36.306 157 100 0 10 166 14 170 6.84e-37 128
Msa1407760 AT3G16100.1 39.216 204 110 4 11 207 10 206 2.08e-36 127
Msa1407760 AT4G18800.1 34.591 159 100 2 10 166 14 170 6.15e-36 125
Msa1407760 AT2G21880.1 36.967 211 110 6 11 207 11 212 7.16e-36 125
Msa1407760 AT4G09720.1 36.765 204 115 6 11 207 10 206 2.66e-35 124
Msa1407760 AT1G22740.1 35.784 204 114 6 11 207 10 203 5.75e-35 123
Msa1407760 AT1G49300.2 37.561 205 112 6 11 207 10 206 6.79e-35 123
Msa1407760 AT1G49300.1 37.561 205 112 6 11 207 10 206 6.79e-35 123
Msa1407760 AT5G03530.2 36.453 203 117 7 10 206 14 210 9.54e-34 120
Msa1407760 AT5G03530.1 36.453 203 117 7 10 206 14 210 9.54e-34 120
Msa1407760 AT1G43890.3 38.953 172 100 4 10 179 14 182 1.45e-33 119
Msa1407760 AT1G43890.1 38.953 172 100 4 10 179 14 182 1.45e-33 119
Msa1407760 AT1G43890.2 38.953 172 100 4 10 179 14 182 1.45e-33 119
Msa1407760 AT4G09720.4 34.450 209 118 5 11 207 10 211 2.57e-33 119
Msa1407760 AT5G03520.2 38.182 165 100 2 44 206 40 204 6.69e-33 117
Msa1407760 AT4G09720.3 34.419 215 116 6 11 207 10 217 9.87e-33 117
Msa1407760 AT4G35860.2 35.802 162 93 3 53 205 4 163 3.00e-32 115
Msa1407760 AT5G39620.1 34.783 207 120 5 9 207 5 204 2.12e-31 114
Msa1407760 AT3G09910.3 37.688 199 114 6 10 206 14 204 6.70e-31 112
Msa1407760 AT3G09910.1 37.688 199 114 6 10 206 14 204 6.70e-31 112
Msa1407760 AT3G09910.2 37.688 199 114 6 10 206 14 204 6.70e-31 112
Msa1407760 AT3G09910.5 39.375 160 94 3 10 167 14 172 5.14e-30 110
Msa1407760 AT3G09910.4 39.375 160 94 3 10 167 14 172 5.14e-30 110
Msa1407760 AT2G21880.4 35.204 196 104 6 26 207 1 187 7.39e-29 107
Msa1407760 AT2G21880.3 35.204 196 104 6 26 207 1 187 7.39e-29 107
Msa1407760 AT5G59150.2 39.474 114 69 0 53 166 5 118 7.16e-28 103
Msa1407760 AT2G21880.2 33.649 211 109 7 11 207 11 204 2.27e-26 100
Msa1407760 AT4G09720.6 36.158 177 99 6 38 207 3 172 3.16e-26 99.8
Msa1407760 AT4G09720.5 36.158 177 99 6 38 207 3 172 3.16e-26 99.8
Msa1407760 AT4G09720.2 36.158 177 99 6 38 207 3 172 3.16e-26 99.8
Msa1407760 AT5G55080.1 30.409 171 116 3 7 177 11 178 6.54e-25 97.4
Msa1407760 AT5G20010.1 30.729 192 126 4 10 201 14 198 1.06e-24 97.1
Msa1407760 AT5G20020.1 30.729 192 126 4 10 201 14 198 1.62e-24 96.7
Msa1407760 AT5G55190.1 32.143 168 111 3 10 177 14 178 1.33e-23 94.0
Msa1407760 AT2G44690.1 35.758 165 92 5 11 163 20 182 2.06e-23 93.2
Msa1407760 AT3G48040.1 36.970 165 90 5 11 163 10 172 2.01e-22 90.9
Msa1407760 AT5G62880.1 35.758 165 92 5 11 163 10 172 3.45e-21 87.8
Msa1407760 AT4G35020.1 33.939 165 95 5 11 163 8 170 3.60e-21 87.0
Msa1407760 AT4G35020.2 33.939 165 95 5 11 163 8 170 3.60e-21 87.0
Msa1407760 AT4G35020.3 33.939 165 95 5 11 163 8 170 3.60e-21 87.0
Msa1407760 AT3G48040.2 37.179 156 84 5 11 154 10 163 1.81e-20 84.7
Msa1407760 AT3G51300.1 33.333 165 96 5 11 163 8 170 4.49e-20 84.3
Msa1407760 AT1G20090.1 33.333 165 96 5 11 163 7 169 5.04e-20 84.0
Msa1407760 AT1G75840.1 33.333 165 96 5 11 163 8 170 5.20e-20 84.0
Msa1407760 AT4G35950.1 33.333 165 96 5 11 163 8 170 1.97e-19 82.4
Msa1407760 AT4G28950.1 33.129 163 97 5 11 163 8 168 2.57e-19 82.4
Msa1407760 AT2G17800.2 33.333 165 96 5 11 163 8 170 2.62e-19 82.4
Msa1407760 AT2G17800.1 33.333 165 96 5 11 163 8 170 2.62e-19 82.4
Msa1407760 AT5G62880.2 35.897 156 86 5 11 154 10 163 3.20e-19 82.0
Msa1407760 AT5G45970.1 31.515 165 99 5 11 163 8 170 9.98e-19 80.9
Msa1407760 AT4G35020.4 35.965 114 70 3 11 123 8 119 2.68e-15 70.5
Msa1407760 AT4G35020.5 35.965 114 70 3 11 123 8 119 2.68e-15 70.5
Msa1407760 AT5G46025.1 36.782 87 54 1 85 170 20 106 2.69e-14 67.0
Msa1407760 AT3G51290.2 32.576 132 76 4 44 163 641 771 5.44e-12 64.7
Msa1407760 AT3G21700.3 23.256 172 125 3 5 170 102 272 3.63e-11 61.6
Msa1407760 AT5G54840.1 24.699 166 117 5 11 170 103 266 4.43e-11 61.2

Find 62 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATGATCTTCAGTTAAT+TGG 0.179000 tig0023324:-46418 Msa1407760:three_prime_UTR
TAAGAAAACGAGCTTGTATT+TGG 0.223259 tig0023324:+48703 None:intergenic
AACCCTTTCTTCTACAAATA+AGG 0.224029 tig0023324:-46624 Msa1407760:CDS
TGAGACTTCTAAATCTTTCT+TGG 0.265565 tig0023324:+47717 None:intergenic
CGATCCATTTCTCTCATAAA+TGG 0.286173 tig0023324:-48744 Msa1407760:exon
AGTCGAAAATGGCGTGTATT+TGG 0.316103 tig0023324:-48894 None:intergenic
GAACTGTTCGTTTGCAGCTT+TGG 0.333518 tig0023324:-47900 Msa1407760:intron
TCCTCCCTGCTGCTCTGTAT+TGG 0.354070 tig0023324:+46559 None:intergenic
CTTCCTTATTTGTAGAAGAA+AGG 0.383495 tig0023324:+46621 None:intergenic
GAGGAGGTTGCTCATGTTAG+AGG 0.391358 tig0023324:-46541 Msa1407760:exon
AAGATTGCTTCCGCCTTGCC+AGG 0.393556 tig0023324:-46653 Msa1407760:CDS
GATGCCAAGTCAAAAGAGTT+TGG 0.394493 tig0023324:-46996 Msa1407760:CDS
AACGAACAGTTCTATCTTCA+AGG 0.399142 tig0023324:+47911 None:intergenic
CATGAAGCGGGTGATGATAC+TGG 0.410880 tig0023324:+48658 None:intergenic
GAAGAAAGGGTTTCCATCCC+TGG 0.417515 tig0023324:+46635 None:intergenic
ATTATTGTATTCTTACATCC+AGG 0.418547 tig0023324:+46313 None:intergenic
CAAATTCGATACCACCTATC+AGG 0.420018 tig0023324:-48630 Msa1407760:intron
TTCCTTATTTGTAGAAGAAA+GGG 0.422408 tig0023324:+46622 None:intergenic
GAAGAATCTCTTATGTAGCT+TGG 0.431932 tig0023324:+47692 None:intergenic
TGTGGGACAAATTGCGGTAA+TGG 0.433044 tig0023324:-46393 Msa1407760:three_prime_UTR
TGCTTCCGCCTTGCCAGGGA+TGG 0.448090 tig0023324:-46648 Msa1407760:CDS
TTCATCCAATACAGAGCAGC+AGG 0.451660 tig0023324:-46564 Msa1407760:CDS
GTCGCCATTTATGAGAGAAA+TGG 0.453134 tig0023324:+48740 None:intergenic
TCTTAAATGTAAAGCAAAGC+TGG 0.459400 tig0023324:-46458 Msa1407760:three_prime_UTR
AAACTGATCTTGTCGAGAAA+AGG 0.473751 tig0023324:-47363 Msa1407760:intron
TTCTTAGGCGATCAATCCGT+TGG 0.478079 tig0023324:-48686 Msa1407760:CDS
AGGCAAGTTTCTATAGAAGA+AGG 0.486341 tig0023324:-47020 Msa1407760:CDS
GATGTTATAATTGTCTTGGT+TGG 0.487954 tig0023324:-47391 Msa1407760:CDS
TAGTGATGTTATAATTGTCT+TGG 0.496039 tig0023324:-47395 Msa1407760:CDS
ATCGAAACCAGTGCAAAAGC+AGG 0.513342 tig0023324:-46963 Msa1407760:CDS
TTTGTTATACAATTAGTCCC+TGG 0.518774 tig0023324:-46331 Msa1407760:three_prime_UTR
AATGAAGAATTGAACCTGAT+AGG 0.522083 tig0023324:+48616 None:intergenic
AATACAGAGCAGCAGGGAGG+AGG 0.528419 tig0023324:-46557 Msa1407760:CDS
GTATTGGATGAATGCACTGT+GGG 0.529684 tig0023324:+46575 None:intergenic
TTAACTTTCAGGGATACTGC+AGG 0.536162 tig0023324:-47740 Msa1407760:intron
ATATAATTTCAGGCTACTAT+CGG 0.539656 tig0023324:-47961 Msa1407760:intron
TTATTGTATTCTTACATCCA+GGG 0.549799 tig0023324:+46314 None:intergenic
AAAAGCAGGCTTCAATATCA+AGG 0.552081 tig0023324:-46949 Msa1407760:intron
CACTAACAAGTGGGTTGAGG+AGG 0.553351 tig0023324:-47434 Msa1407760:CDS
GAACACTAACAAGTGGGTTG+AGG 0.553502 tig0023324:-47437 Msa1407760:CDS
GAATTTGTCGTACATGAAGC+GGG 0.561469 tig0023324:+48646 None:intergenic
TTCTACAAATAAGGAAGACA+TGG 0.563578 tig0023324:-46615 Msa1407760:CDS
AGATTGCTTCCGCCTTGCCA+GGG 0.573903 tig0023324:-46652 Msa1407760:CDS
CATTTATGAGAGAAATGGAT+CGG 0.579731 tig0023324:+48745 None:intergenic
CGAATTTGTCGTACATGAAG+CGG 0.587508 tig0023324:+48645 None:intergenic
AAGGGTTTCCATCCCTGGCA+AGG 0.588850 tig0023324:+46640 None:intergenic
CATTTCTGAACACTAACAAG+TGG 0.594464 tig0023324:-47444 Msa1407760:CDS
ATCTTCAGTTAATTGGTGTG+TGG 0.604711 tig0023324:-46411 Msa1407760:three_prime_UTR
TCTTCAGTTAATTGGTGTGT+GGG 0.609677 tig0023324:-46410 Msa1407760:three_prime_UTR
ATTTCTCTCATAAATGGCGA+CGG 0.612804 tig0023324:-48738 Msa1407760:exon
ATTTCTGAACACTAACAAGT+GGG 0.616106 tig0023324:-47443 Msa1407760:CDS
GAAGCAATCTTACGAAACAA+AGG 0.623923 tig0023324:+46665 None:intergenic
ACGAGCTTGTATTTGGCGAG+AGG 0.624355 tig0023324:+48710 None:intergenic
TTTCACTTGAGTATAATACT+GGG 0.651284 tig0023324:-46488 Msa1407760:three_prime_UTR
GAGGAGGTGCGTCAAGAACG+TGG 0.657614 tig0023324:-47418 Msa1407760:CDS
TGTATTGGATGAATGCACTG+TGG 0.660739 tig0023324:+46574 None:intergenic
GAAGAATTGAACCTGATAGG+TGG 0.666711 tig0023324:+48619 None:intergenic
TAAATGTAAAGCAAAGCTGG+AGG 0.681704 tig0023324:-46455 Msa1407760:three_prime_UTR
TTGGTGTGTGGGACAAATTG+CGG 0.687470 tig0023324:-46399 Msa1407760:three_prime_UTR
TCCAATACAGAGCAGCAGGG+AGG 0.703010 tig0023324:-46560 Msa1407760:CDS
GGTTTCCATCCCTGGCAAGG+CGG 0.703532 tig0023324:+46643 None:intergenic
TCATCCAATACAGAGCAGCA+GGG 0.714266 tig0023324:-46563 Msa1407760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATGTGATTTATTAA+GGG + tig0023324:46816-46835 None:intergenic 10.0%
!!! TTAATAAATCACATTTTTAA+GGG - tig0023324:46816-46835 Msa1407760:intron 10.0%
!! TATAACAAATGAAAAAATAA+CGG + tig0023324:48839-48858 None:intergenic 10.0%
!! CTTAAAAATGTGATTTATTA+AGG + tig0023324:46817-46836 None:intergenic 15.0%
!!! CTTAATAAATCACATTTTTA+AGG - tig0023324:46815-46834 Msa1407760:intron 15.0%
!!! ACAATGAATTTTAAAAAAAC+TGG + tig0023324:46870-46889 None:intergenic 15.0%
!! AAATTTGATCATATAATTTC+AGG - tig0023324:47210-47229 Msa1407760:intron 15.0%
!! TATCGTTATTTAACTAAAAA+AGG + tig0023324:47657-47676 None:intergenic 15.0%
!!! GTTTTTGTTTAATATCATAT+TGG - tig0023324:47910-47929 Msa1407760:CDS 15.0%
!! GTTAATGAAATTAATTGAAT+TGG + tig0023324:48071-48090 None:intergenic 15.0%
!! TCAATTAATTTCATTAACAA+AGG - tig0023324:48073-48092 Msa1407760:intron 15.0%
!!! TGGTCTAATTATTTTTTATA+TGG - tig0023324:48125-48144 Msa1407760:intron 15.0%
!! CAATCACATAAAAAATCATA+GGG + tig0023324:46707-46726 None:intergenic 20.0%
!! AGATTGATCATTCAAAAATT+AGG - tig0023324:46891-46910 Msa1407760:intron 20.0%
!!! AATTCTGATGATTTTTTAAG+AGG - tig0023324:47011-47030 Msa1407760:CDS 20.0%
!!! GCTTTTATGTTAGAATATTA+TGG - tig0023324:47033-47052 Msa1407760:intron 20.0%
!! TTCCAACATCATATAATAAA+TGG - tig0023324:47114-47133 Msa1407760:intron 20.0%
!! CAAAAAAATATAAATTGACG+AGG + tig0023324:47318-47337 None:intergenic 20.0%
!! TCAGAAATAGTAAAAAGAAA+AGG + tig0023324:47409-47428 None:intergenic 20.0%
!!! TTAGTGTATTTTAACTTTCA+GGG - tig0023324:47431-47450 Msa1407760:CDS 20.0%
!! AGGTTAATAACTATAAATTG+AGG + tig0023324:47687-47706 None:intergenic 20.0%
!! ATGAATATATAGATCAAACT+CGG + tig0023324:47858-47877 None:intergenic 20.0%
!! AATTAATTGAATTGGCTATA+AGG + tig0023324:48063-48082 None:intergenic 20.0%
!! TATTCGATGTAAAACAAAAT+AGG + tig0023324:48403-48422 None:intergenic 20.0%
!! TTCTCAATTTCAATTTTGCA+TGG - tig0023324:46594-46613 Msa1407760:CDS 25.0%
! CCAATCACATAAAAAATCAT+AGG + tig0023324:46708-46727 None:intergenic 25.0%
!!! CCTATGATTTTTTATGTGAT+TGG - tig0023324:46705-46724 Msa1407760:intron 25.0%
! CTCCATTTATTATATGATGT+TGG + tig0023324:47119-47138 None:intergenic 25.0%
! CAACATCATATAATAAATGG+AGG - tig0023324:47117-47136 Msa1407760:intron 25.0%
! ATATAATTTCAGGCTACTAT+CGG - tig0023324:47220-47239 Msa1407760:intron 25.0%
! AGATGATGCATTATGATTTA+TGG - tig0023324:47360-47379 Msa1407760:intron 25.0%
!!! CTTAGTGTATTTTAACTTTC+AGG - tig0023324:47430-47449 Msa1407760:CDS 25.0%
! TAGTGATGTTATAATTGTCT+TGG - tig0023324:47786-47805 Msa1407760:intron 25.0%
! TCTATATATTCATTCACAAC+CGG - tig0023324:47865-47884 Msa1407760:intron 25.0%
! TAGCAAAATTACAAAGAACA+TGG + tig0023324:48011-48030 None:intergenic 25.0%
!!! CTTTGTAATTTTGCTATGAT+AGG - tig0023324:48015-48034 Msa1407760:intron 25.0%
! TTTCAAATATTGCGATGTTA+TGG - tig0023324:48105-48124 Msa1407760:intron 25.0%
!! AATGAATTTTCATAGTTGCT+TGG - tig0023324:48263-48282 Msa1407760:intron 25.0%
!! ATGAATTTTCATAGTTGCTT+GGG - tig0023324:48264-48283 Msa1407760:intron 25.0%
! TTAGATGTGAAAGTTAGTAA+AGG + tig0023324:48371-48390 None:intergenic 25.0%
!! TTCCTTATTTGTAGAAGAAA+GGG + tig0023324:48562-48581 None:intergenic 25.0%
!! TTTTCACTTGAGTATAATAC+TGG - tig0023324:48692-48711 Msa1407760:CDS 25.0%
! TTTCACTTGAGTATAATACT+GGG - tig0023324:48693-48712 Msa1407760:CDS 25.0%
! ATCAATGATCTTCAGTTAAT+TGG - tig0023324:48763-48782 Msa1407760:five_prime_UTR 25.0%
! TTATTGTATTCTTACATCCA+GGG + tig0023324:48870-48889 None:intergenic 25.0%
! ATTATTGTATTCTTACATCC+AGG + tig0023324:48871-48890 None:intergenic 25.0%
CATTTATGAGAGAAATGGAT+CGG + tig0023324:46439-46458 None:intergenic 30.0%
TAAGAAAACGAGCTTGTATT+TGG + tig0023324:46481-46500 None:intergenic 30.0%
! AAATACAAGCTCGTTTTCTT+AGG - tig0023324:46480-46499 Msa1407760:three_prime_UTR 30.0%
AATGAAGAATTGAACCTGAT+AGG + tig0023324:46568-46587 None:intergenic 30.0%
!! TGATCACAAGTTGATGAATT+AGG - tig0023324:46752-46771 Msa1407760:intron 30.0%
!! AAGTTGATGAATTAGGACTT+TGG - tig0023324:46759-46778 Msa1407760:intron 30.0%
! TCATTCATAAGTCACTTTCA+AGG - tig0023324:46975-46994 Msa1407760:CDS 30.0%
TGAAACAAAAAACACCTACA+CGG + tig0023324:47386-47405 None:intergenic 30.0%
TGAGACTTCTAAATCTTTCT+TGG + tig0023324:47467-47486 None:intergenic 30.0%
TATGTGTTTGCATTTGAATC+TGG - tig0023324:47607-47626 Msa1407760:intron 30.0%
TACATTAGAACAGCTTACTT+AGG + tig0023324:47707-47726 None:intergenic 30.0%
ATTTCTGAACACTAACAAGT+GGG - tig0023324:47738-47757 Msa1407760:intron 30.0%
GATGTTATAATTGTCTTGGT+TGG - tig0023324:47790-47809 Msa1407760:intron 30.0%
!!! TTATTTTTTATATGGCCGCT+TGG - tig0023324:48133-48152 Msa1407760:intron 30.0%
AACCCTTTCTTCTACAAATA+AGG - tig0023324:48557-48576 Msa1407760:intron 30.0%
! CTTCCTTATTTGTAGAAGAA+AGG + tig0023324:48563-48582 None:intergenic 30.0%
TTCTACAAATAAGGAAGACA+TGG - tig0023324:48566-48585 Msa1407760:intron 30.0%
TCTTAAATGTAAAGCAAAGC+TGG - tig0023324:48723-48742 Msa1407760:CDS 30.0%
! TTTGTTATACAATTAGTCCC+TGG - tig0023324:48850-48869 Msa1407760:five_prime_UTR 30.0%
CGATCCATTTCTCTCATAAA+TGG - tig0023324:46437-46456 Msa1407760:three_prime_UTR 35.0%
ATTTCTCTCATAAATGGCGA+CGG - tig0023324:46443-46462 Msa1407760:three_prime_UTR 35.0%
AATTAGGACTTTGGACGATT+AGG - tig0023324:46768-46787 Msa1407760:intron 35.0%
GGTTTCAACGACTCAAATTA+TGG + tig0023324:46919-46938 None:intergenic 35.0%
TAGCAATCTAGCAACATAGA+GGG + tig0023324:47185-47204 None:intergenic 35.0%
TTAGCAATCTAGCAACATAG+AGG + tig0023324:47186-47205 None:intergenic 35.0%
AACGAACAGTTCTATCTTCA+AGG + tig0023324:47273-47292 None:intergenic 35.0%
ATTATGATTTATGGCCGTGT+AGG - tig0023324:47369-47388 Msa1407760:CDS 35.0%
GAAGAATCTCTTATGTAGCT+TGG + tig0023324:47492-47511 None:intergenic 35.0%
TAAGCTGTTCTAATGTAGAC+AGG - tig0023324:47710-47729 Msa1407760:CDS 35.0%
CATTTCTGAACACTAACAAG+TGG - tig0023324:47737-47756 Msa1407760:intron 35.0%
AAACTGATCTTGTCGAGAAA+AGG - tig0023324:47818-47837 Msa1407760:intron 35.0%
AGGCAAGTTTCTATAGAAGA+AGG - tig0023324:48161-48180 Msa1407760:intron 35.0%
!! GATTCCAAACTCTTTTGACT+TGG + tig0023324:48192-48211 None:intergenic 35.0%
AAAAGCAGGCTTCAATATCA+AGG - tig0023324:48232-48251 Msa1407760:intron 35.0%
GTTTATCTTCTTTCCCATGT+TGG - tig0023324:48452-48471 Msa1407760:intron 35.0%
! TGCATTGACAGATAACAATG+AGG + tig0023324:48487-48506 None:intergenic 35.0%
GAAGCAATCTTACGAAACAA+AGG + tig0023324:48519-48538 None:intergenic 35.0%
TAAATGTAAAGCAAAGCTGG+AGG - tig0023324:48726-48745 Msa1407760:CDS 35.0%
ATCTTCAGTTAATTGGTGTG+TGG - tig0023324:48770-48789 Msa1407760:five_prime_UTR 35.0%
TCTTCAGTTAATTGGTGTGT+GGG - tig0023324:48771-48790 Msa1407760:five_prime_UTR 35.0%
GTCGCCATTTATGAGAGAAA+TGG + tig0023324:46444-46463 None:intergenic 40.0%
!!! GATGATACTGGTTTTGCCAA+CGG + tig0023324:46514-46533 None:intergenic 40.0%
GAATTTGTCGTACATGAAGC+GGG + tig0023324:46538-46557 None:intergenic 40.0%
CGAATTTGTCGTACATGAAG+CGG + tig0023324:46539-46558 None:intergenic 40.0%
CAAATTCGATACCACCTATC+AGG - tig0023324:46551-46570 Msa1407760:CDS 40.0%
GAAGAATTGAACCTGATAGG+TGG + tig0023324:46565-46584 None:intergenic 40.0%
AGTCGTTGAAACCCTTGAAT+GGG - tig0023324:46926-46945 Msa1407760:intron 40.0%
GAACTCTTCTTCCCATTCAA+GGG + tig0023324:46940-46959 None:intergenic 40.0%
ATGGTGCAATTTCTGCTTAG+TGG - tig0023324:47052-47071 Msa1407760:intron 40.0%
! TCTGCTTAGTGGATAAAGCT+TGG - tig0023324:47063-47082 Msa1407760:intron 40.0%
AGCAATCTAGCAACATAGAG+GGG + tig0023324:47184-47203 None:intergenic 40.0%
TTAACTTTCAGGGATACTGC+AGG - tig0023324:47441-47460 Msa1407760:CDS 40.0%
AAACTTGCCTGTAAACCAAG+CGG + tig0023324:48151-48170 None:intergenic 40.0%
GATGCCAAGTCAAAAGAGTT+TGG - tig0023324:48185-48204 Msa1407760:intron 40.0%
GTATTGGATGAATGCACTGT+GGG + tig0023324:48609-48628 None:intergenic 40.0%
TGTATTGGATGAATGCACTG+TGG + tig0023324:48610-48629 None:intergenic 40.0%
TTCTTAGGCGATCAATCCGT+TGG - tig0023324:46495-46514 Msa1407760:three_prime_UTR 45.0%
GAGTCGTTGAAACCCTTGAA+TGG - tig0023324:46925-46944 Msa1407760:intron 45.0%
CGAACTCTTCTTCCCATTCA+AGG + tig0023324:46941-46960 None:intergenic 45.0%
GCAATCTAGCAACATAGAGG+GGG + tig0023324:47183-47202 None:intergenic 45.0%
GAACTGTTCGTTTGCAGCTT+TGG - tig0023324:47281-47300 Msa1407760:intron 45.0%
!! GAACACTAACAAGTGGGTTG+AGG - tig0023324:47744-47763 Msa1407760:intron 45.0%
!! TTCACAACCGGTTTTCTGAC+TGG - tig0023324:47877-47896 Msa1407760:intron 45.0%
!! TCACAACCGGTTTTCTGACT+GGG - tig0023324:47878-47897 Msa1407760:intron 45.0%
ACCATACCCAGTCAGAAAAC+CGG + tig0023324:47887-47906 None:intergenic 45.0%
ATAGGTCAAGTGTCTTGCAG+TGG - tig0023324:48033-48052 Msa1407760:intron 45.0%
TATATGGCCGCTTGGTTTAC+AGG - tig0023324:48141-48160 Msa1407760:intron 45.0%
ATCGAAACCAGTGCAAAAGC+AGG - tig0023324:48218-48237 Msa1407760:intron 45.0%
!! ATTGAAGCCTGCTTTTGCAC+TGG + tig0023324:48228-48247 None:intergenic 45.0%
CAGGCTTCAATATCAAGGTC+AGG - tig0023324:48237-48256 Msa1407760:intron 45.0%
GAGGACACAAGAACCAACAT+GGG + tig0023324:48468-48487 None:intergenic 45.0%
TGAGGACACAAGAACCAACA+TGG + tig0023324:48469-48488 None:intergenic 45.0%
TTCATCCAATACAGAGCAGC+AGG - tig0023324:48617-48636 Msa1407760:intron 45.0%
TCATCCAATACAGAGCAGCA+GGG - tig0023324:48618-48637 Msa1407760:intron 45.0%
TTGGTGTGTGGGACAAATTG+CGG - tig0023324:48782-48801 Msa1407760:five_prime_UTR 45.0%
TGTGGGACAAATTGCGGTAA+TGG - tig0023324:48788-48807 Msa1407760:five_prime_UTR 45.0%
ACGAGCTTGTATTTGGCGAG+AGG + tig0023324:46474-46493 None:intergenic 50.0%
CATGAAGCGGGTGATGATAC+TGG + tig0023324:46526-46545 None:intergenic 50.0%
!! CACTAACAAGTGGGTTGAGG+AGG - tig0023324:47747-47766 Msa1407760:intron 50.0%
!! ACCGGTTTTCTGACTGGGTA+TGG - tig0023324:47883-47902 Msa1407760:intron 50.0%
GAAGAAAGGGTTTCCATCCC+TGG + tig0023324:48549-48568 None:intergenic 50.0%
GAGGAGGTTGCTCATGTTAG+AGG - tig0023324:48640-48659 Msa1407760:CDS 50.0%
AAGATTGCTTCCGCCTTGCC+AGG - tig0023324:48528-48547 Msa1407760:intron 55.0%
AGATTGCTTCCGCCTTGCCA+GGG - tig0023324:48529-48548 Msa1407760:intron 55.0%
AAGGGTTTCCATCCCTGGCA+AGG + tig0023324:48544-48563 None:intergenic 55.0%
TCCAATACAGAGCAGCAGGG+AGG - tig0023324:48621-48640 Msa1407760:intron 55.0%
TCCTCCCTGCTGCTCTGTAT+TGG + tig0023324:48625-48644 None:intergenic 55.0%
AATACAGAGCAGCAGGGAGG+AGG - tig0023324:48624-48643 Msa1407760:intron 55.0%
! GAGGAGGTGCGTCAAGAACG+TGG - tig0023324:47763-47782 Msa1407760:intron 60.0%
GGTTTCCATCCCTGGCAAGG+CGG + tig0023324:48541-48560 None:intergenic 60.0%
TGCTTCCGCCTTGCCAGGGA+TGG - tig0023324:48533-48552 Msa1407760:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023324 gene 46302 48901 46302 ID=Msa1407760;Name=Msa1407760
tig0023324 mRNA 46302 48901 46302 ID=Msa1407760-mRNA-1;Parent=Msa1407760;Name=Msa1407760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|6|242|207
tig0023324 exon 46302 46687 46302 ID=Msa1407760-mRNA-1:exon:25285;Parent=Msa1407760-mRNA-1
tig0023324 exon 46950 47040 46950 ID=Msa1407760-mRNA-1:exon:25284;Parent=Msa1407760-mRNA-1
tig0023324 exon 47364 47475 47364 ID=Msa1407760-mRNA-1:exon:25283;Parent=Msa1407760-mRNA-1
tig0023324 exon 47663 47751 47663 ID=Msa1407760-mRNA-1:exon:25282;Parent=Msa1407760-mRNA-1
tig0023324 exon 47901 47971 47901 ID=Msa1407760-mRNA-1:exon:25281;Parent=Msa1407760-mRNA-1
tig0023324 exon 48631 48901 48631 ID=Msa1407760-mRNA-1:exon:25280;Parent=Msa1407760-mRNA-1
tig0023324 five_prime_UTR 48748 48901 48748 ID=Msa1407760-mRNA-1:five_prime_utr;Parent=Msa1407760-mRNA-1
tig0023324 CDS 48631 48747 48631 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 CDS 47901 47971 47901 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 CDS 47663 47751 47663 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 CDS 47364 47475 47364 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 CDS 46950 47040 46950 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 CDS 46544 46687 46544 ID=Msa1407760-mRNA-1:cds;Parent=Msa1407760-mRNA-1
tig0023324 three_prime_UTR 46302 46543 46302 ID=Msa1407760-mRNA-1:three_prime_utr;Parent=Msa1407760-mRNA-1
Gene Sequence

>Msa1407760

ATGGCGACGGTTTCACCTCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCCGTTGGCAAAACCAGTATCATCACCCGCTTCATGTACGACAAATTCGATACCACCTATCAGGCTACTATCGGTATTGATTTTTTGTCAAAAACAATGTACCTTGAAGATAGAACTGTTCGTTTGCAGCTTTGGGATACTGCAGGCCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTGCGTCAAGAACGTGGTAGTGATGTTATAATTGTCTTGGTTGGAAACAAAACTGATCTTGTCGAGAAAAGGCAAGTTTCTATAGAAGAAGGAGATGCCAAGTCAAAAGAGTTTGGAATCATGTTTATCGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGCCTTTGTTTCGTAAGATTGCTTCCGCCTTGCCAGGGATGGAAACCCTTTCTTCTACAAATAAGGAAGACATGGTTGACGTAAATTTAAAACCCACAGTGCATTCATCCAATACAGAGCAGCAGGGAGGAGGTTGCTCATGTTAG

Protein sequence

>Msa1407760

MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRQERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPLFRKIASALPGMETLSSTNKEDMVDVNLKPTVHSSNTEQQGGGCSC*