Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161950 | XP_003590395.1 | 100.000 | 529 | 0 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1085 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161950 | sp|Q2RAK2|KPYC1_ORYSJ | 88.847 | 529 | 57 | 1 | 1 | 529 | 1 | 527 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161950 | Q1SN32 | 100.000 | 529 | 0 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1085 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0161950 | Msa0467640 | 0.818075 | 2.368111e-52 | -8.615850e-47 |
| Msa0161950 | Msa0514070 | 0.822529 | 2.256630e-53 | -8.615850e-47 |
| Msa0161950 | Msa0640510 | 0.813741 | 2.195290e-51 | -8.615850e-47 |
| Msa0161950 | Msa0829480 | 0.821784 | 3.358373e-53 | -8.615850e-47 |
| Msa0161950 | Msa1157930 | 0.803719 | 3.048677e-49 | -8.615850e-47 |
| Msa0161950 | Msa1276890 | -0.805616 | 1.225018e-49 | -8.615850e-47 |
| Msa0161950 | Msa1370070 | 0.820981 | 5.146599e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161950 | MtrunA17_Chr1g0179541 | 96.975 | 529 | 0 | 1 | 1 | 529 | 1 | 513 | 0.0 | 1045 |
| Msa0161950 | MtrunA17_Chr7g0265591 | 90.359 | 529 | 49 | 1 | 1 | 529 | 1 | 527 | 0.0 | 991 |
| Msa0161950 | MtrunA17_Chr1g0197911 | 81.474 | 529 | 95 | 2 | 1 | 529 | 1 | 526 | 0.0 | 910 |
| Msa0161950 | MtrunA17_Chr6g0448901 | 43.260 | 497 | 268 | 6 | 30 | 524 | 22 | 506 | 3.86e-128 | 383 |
| Msa0161950 | MtrunA17_Chr4g0043311 | 42.629 | 502 | 272 | 7 | 30 | 528 | 9 | 497 | 2.21e-127 | 381 |
| Msa0161950 | MtrunA17_Chr7g0263711 | 41.923 | 520 | 277 | 11 | 14 | 528 | 1 | 500 | 4.04e-124 | 373 |
| Msa0161950 | MtrunA17_Chr4g0043301 | 42.545 | 503 | 271 | 9 | 30 | 528 | 12 | 500 | 6.77e-123 | 370 |
| Msa0161950 | MtrunA17_Chr1g0206791 | 26.582 | 474 | 299 | 11 | 30 | 485 | 18 | 460 | 2.87e-45 | 166 |
| Msa0161950 | MtrunA17_Chr5g0400361 | 27.105 | 487 | 307 | 15 | 30 | 506 | 79 | 527 | 8.94e-44 | 163 |
| Msa0161950 | MtrunA17_Chr6g0463101 | 26.253 | 499 | 311 | 14 | 26 | 514 | 103 | 554 | 7.66e-43 | 160 |
| Msa0161950 | MtrunA17_Chr1g0188101 | 24.494 | 445 | 299 | 10 | 30 | 452 | 91 | 520 | 4.87e-42 | 158 |
| Msa0161950 | MtrunA17_Chr1g0202291 | 28.224 | 411 | 262 | 11 | 30 | 431 | 105 | 491 | 5.48e-41 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161950 | AT3G52990.1 | 87.902 | 529 | 62 | 1 | 1 | 529 | 1 | 527 | 0.0 | 972 |
| Msa0161950 | AT2G36580.1 | 87.713 | 529 | 63 | 1 | 1 | 529 | 1 | 527 | 0.0 | 967 |
| Msa0161950 | AT3G52990.2 | 87.815 | 476 | 56 | 1 | 54 | 529 | 1 | 474 | 0.0 | 877 |
| Msa0161950 | AT5G63680.3 | 43.200 | 500 | 264 | 8 | 30 | 524 | 22 | 506 | 1.02e-124 | 375 |
| Msa0161950 | AT5G63680.1 | 43.200 | 500 | 264 | 8 | 30 | 524 | 22 | 506 | 1.02e-124 | 375 |
| Msa0161950 | AT5G63680.2 | 43.200 | 500 | 264 | 8 | 30 | 524 | 22 | 506 | 1.02e-124 | 375 |
| Msa0161950 | AT5G56350.1 | 42.315 | 501 | 275 | 6 | 30 | 528 | 10 | 498 | 1.58e-124 | 374 |
| Msa0161950 | AT5G08570.1 | 42.455 | 497 | 272 | 7 | 30 | 524 | 22 | 506 | 1.05e-122 | 370 |
| Msa0161950 | AT5G08570.2 | 42.455 | 497 | 272 | 7 | 30 | 524 | 22 | 506 | 1.05e-122 | 370 |
| Msa0161950 | AT5G08570.3 | 42.455 | 497 | 272 | 7 | 30 | 524 | 22 | 506 | 1.05e-122 | 370 |
| Msa0161950 | AT4G26390.1 | 41.317 | 501 | 280 | 8 | 30 | 528 | 9 | 497 | 3.93e-120 | 363 |
| Msa0161950 | AT3G04050.1 | 40.476 | 504 | 284 | 8 | 30 | 528 | 18 | 510 | 1.48e-115 | 351 |
| Msa0161950 | AT3G25960.1 | 41.211 | 512 | 256 | 11 | 30 | 528 | 18 | 497 | 3.68e-115 | 350 |
| Msa0161950 | AT3G55650.1 | 40.990 | 505 | 280 | 9 | 30 | 528 | 18 | 510 | 4.46e-114 | 348 |
| Msa0161950 | AT3G55810.1 | 39.010 | 505 | 272 | 10 | 30 | 528 | 18 | 492 | 1.68e-101 | 315 |
| Msa0161950 | AT1G32440.1 | 30.048 | 416 | 269 | 10 | 30 | 442 | 101 | 497 | 1.52e-46 | 171 |
| Msa0161950 | AT5G52920.1 | 26.639 | 488 | 308 | 16 | 30 | 506 | 112 | 560 | 1.95e-40 | 154 |
| Msa0161950 | AT3G22960.1 | 25.113 | 442 | 298 | 11 | 30 | 452 | 119 | 546 | 3.47e-40 | 154 |
Find 153 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATCTGTTGAGACTATTTC+TGG | 0.131356 | 1_4:+38064129 | Msa0161950:CDS |
| TGATACTGTCTTAGGTAATT+TGG | 0.162368 | 1_4:-38063637 | None:intergenic |
| GAATTTGAAGACTGCTATTA+AGG | 0.207568 | 1_4:+38064325 | Msa0161950:CDS |
| CTTGCAGAATCTCATCAAAA+TGG | 0.231739 | 1_4:-38066878 | None:intergenic |
| TAATTTGGGTAGTGGAATTC+TGG | 0.254619 | 1_4:-38063622 | None:intergenic |
| TACCATGATTCATTCTTGTT+TGG | 0.268487 | 1_4:+38069912 | Msa0161950:three_prime_UTR |
| TAACGGCTTTGGATGGTTCT+AGG | 0.277578 | 1_4:-38063927 | None:intergenic |
| TTTCACAGTGATACTGTCTT+AGG | 0.283625 | 1_4:-38063645 | None:intergenic |
| TTAGGTACGAGCTGCTATTA+AGG | 0.309182 | 1_4:+38068476 | Msa0161950:intron |
| AATTAGTTAGGGGTAAATTT+TGG | 0.309275 | 1_4:+38069950 | Msa0161950:three_prime_UTR |
| CGGGACTTCCTTTCAAAGTT+AGG | 0.313184 | 1_4:+38066703 | Msa0161950:CDS |
| AGGATGGAAGCCATCCTAAT+TGG | 0.316366 | 1_4:-38063907 | None:intergenic |
| GAAGCTTCCTGTCCCTGGTT+GGG | 0.317827 | 1_4:-38065269 | None:intergenic |
| TTTGATCACTGAATTATTAC+TGG | 0.325875 | 1_4:+38069651 | Msa0161950:three_prime_UTR |
| ACCATGATTCATTCTTGTTT+GGG | 0.326078 | 1_4:+38069913 | Msa0161950:three_prime_UTR |
| AAATATTAAACCGAAAATAT+TGG | 0.326843 | 1_4:-38069719 | None:intergenic |
| GTCTCAACAGATCGAGATTT+AGG | 0.328629 | 1_4:-38064120 | None:intergenic |
| TGACTGTCCTCTTAAAATAA+AGG | 0.336397 | 1_4:-38067968 | None:intergenic |
| TGCCCTACACAAGTGTAATA+TGG | 0.344125 | 1_4:+38067362 | Msa0161950:CDS |
| ATAATTTGCTTCACTTCATC+TGG | 0.344617 | 1_4:+38068513 | Msa0161950:CDS |
| TATCCTTTCCCGTGGAAACT+TGG | 0.355849 | 1_4:+38066914 | Msa0161950:CDS |
| AGGAAGTGATGCAATTCTTC+TGG | 0.357756 | 1_4:+38067711 | Msa0161950:intron |
| GATACTGTCTTAGGTAATTT+GGG | 0.358949 | 1_4:-38063636 | None:intergenic |
| ATCTTCAAGTTGCGTTTGTT+TGG | 0.372101 | 1_4:+38063780 | Msa0161950:five_prime_UTR |
| ATATTGCCAATCAACTTTGA+TGG | 0.373370 | 1_4:+38065299 | Msa0161950:CDS |
| GTAATAGAAACTAACGGCTT+TGG | 0.378387 | 1_4:-38063938 | None:intergenic |
| TGCTTCTCGAAGAACCAATT+AGG | 0.378941 | 1_4:+38063893 | Msa0161950:CDS |
| ACAGTAGAAATAGTCTCAAC+AGG | 0.380200 | 1_4:-38067760 | None:intergenic |
| AAGCTTCCTGTCCCTGGTTG+GGG | 0.381155 | 1_4:-38065268 | None:intergenic |
| ATCAAATGAATCTATTCTTA+AGG | 0.385377 | 1_4:+38069404 | Msa0161950:CDS |
| GTCTTGATTGAAAACTTTCT+CGG | 0.388368 | 1_4:-38067946 | None:intergenic |
| ACAAAGATTGTTGGAACATT+GGG | 0.390975 | 1_4:+38064096 | Msa0161950:CDS |
| TGTCTTAAAGCTGGCATGTC+TGG | 0.401499 | 1_4:+38064153 | Msa0161950:CDS |
| TAGCTGATTTGTCTTAAGTC+GGG | 0.403418 | 1_4:-38068782 | None:intergenic |
| TTCTGTCATTGTCATATACT+AGG | 0.404351 | 1_4:+38066562 | Msa0161950:CDS |
| AAGTGACTGGAAGGCATGTT+TGG | 0.407347 | 1_4:-38063871 | None:intergenic |
| TGGGTAGTGGAATTCTGGTT+TGG | 0.411080 | 1_4:-38063617 | None:intergenic |
| TCAAGAAAACAGACCTTCTC+TGG | 0.412474 | 1_4:-38066951 | None:intergenic |
| TCTGCAATGACAAAGATTGT+TGG | 0.416245 | 1_4:+38064087 | Msa0161950:CDS |
| CTTAAGGTTGCCCTCGATCA+TGG | 0.441599 | 1_4:+38069420 | Msa0161950:CDS |
| CATTGATTTACCTACCCTTA+CGG | 0.444131 | 1_4:+38066379 | Msa0161950:CDS |
| TTAAGACAAATCAGCTAAAG+TGG | 0.444463 | 1_4:+38068788 | Msa0161950:CDS |
| GACAAAGATTGTTGGAACAT+TGG | 0.447972 | 1_4:+38064095 | Msa0161950:CDS |
| TGAGTATCATCAGGAAACTT+TGG | 0.454011 | 1_4:+38064301 | Msa0161950:CDS |
| GCCAATCAACTTTGATGGAC+TGG | 0.454498 | 1_4:+38065304 | Msa0161950:CDS |
| CTCGATCATGGAAAAGCATT+GGG | 0.456377 | 1_4:+38069432 | Msa0161950:CDS |
| CTGAAGAAGCTTCCTGTCCC+TGG | 0.456380 | 1_4:-38065274 | None:intergenic |
| CCTCCTTGTCTTTCTCCGTA+AGG | 0.459954 | 1_4:-38066394 | None:intergenic |
| GGAAGTGATGCAATTCTTCT+GGG | 0.464327 | 1_4:+38067712 | Msa0161950:intron |
| GTCTTAGGTAATTTGGGTAG+TGG | 0.464667 | 1_4:-38063630 | None:intergenic |
| AATTTGAAGACTGCTATTAA+GGG | 0.467514 | 1_4:+38064326 | Msa0161950:CDS |
| TTGCAGAATCTCATCAAAAT+GGG | 0.469955 | 1_4:-38066877 | None:intergenic |
| CTCACTTGAGATAGATGCTC+AGG | 0.472962 | 1_4:+38065235 | Msa0161950:CDS |
| TTGTCTTTGACAGGTTATGC+TGG | 0.476347 | 1_4:+38065163 | Msa0161950:intron |
| ATCCTTTCCCGTGGAAACTT+GGG | 0.478748 | 1_4:+38066915 | Msa0161950:CDS |
| AGAAGCTTCCTGTCCCTGGT+TGG | 0.479261 | 1_4:-38065270 | None:intergenic |
| AAGAATTCAGCTACATTGAC+CGG | 0.479771 | 1_4:+38066323 | Msa0161950:CDS |
| CTACACAAGTGTAATATGGC+TGG | 0.483244 | 1_4:+38067366 | Msa0161950:CDS |
| CTCCTTGTCTTTCTCCGTAA+GGG | 0.487456 | 1_4:-38066393 | None:intergenic |
| AAGAGGACAGTCAAATATGT+TGG | 0.490520 | 1_4:+38067978 | Msa0161950:CDS |
| TATACTAGAACTAGAACTGT+TGG | 0.494511 | 1_4:-38069551 | None:intergenic |
| TTGCTTCACTTCATCTGGAA+GGG | 0.494881 | 1_4:+38068518 | Msa0161950:CDS |
| GCCAGTCCATCAAAGTTGAT+TGG | 0.497709 | 1_4:-38065305 | None:intergenic |
| CGTGGCGAAATTGTGGCTGT+TGG | 0.497717 | 1_4:-38063562 | None:intergenic |
| AGGCAATCACTTATTGTAAG+AGG | 0.498841 | 1_4:+38069019 | Msa0161950:CDS |
| ATTTCTGGATGTCTTAAAGC+TGG | 0.501638 | 1_4:+38064144 | Msa0161950:CDS |
| TGTTTACAGGCAGTGAAGAC+GGG | 0.502148 | 1_4:+38065887 | Msa0161950:intron |
| TTAGCTGATTTGTCTTAAGT+CGG | 0.504075 | 1_4:-38068783 | None:intergenic |
| GTTGAGACTATTTCTACTGT+TGG | 0.504957 | 1_4:+38067763 | Msa0161950:CDS |
| TTCTTCGAGAAGCAAGTGAC+TGG | 0.505750 | 1_4:-38063884 | None:intergenic |
| GGTTGTCGCACATAAAATCA+AGG | 0.507281 | 1_4:+38069672 | Msa0161950:three_prime_UTR |
| CCTCGATCATGGAAAAGCAT+TGG | 0.507469 | 1_4:+38069431 | Msa0161950:CDS |
| ACAGAGAGAACAGGCATTGT+CGG | 0.510051 | 1_4:-38068751 | None:intergenic |
| TCAGATTGATTGCAAAGTAT+AGG | 0.511913 | 1_4:+38068728 | Msa0161950:intron |
| GTGTGATCCTGAGTATCATC+AGG | 0.512114 | 1_4:+38064292 | Msa0161950:CDS |
| GGAATCACCACAGAGAGAAC+AGG | 0.513663 | 1_4:-38068760 | None:intergenic |
| AATAGATTCCAAGTGGGTCA+TGG | 0.517411 | 1_4:-38068006 | None:intergenic |
| GTTGTTGTTTGTCAGAAACT+TGG | 0.518492 | 1_4:+38069477 | Msa0161950:CDS |
| CAGCCATATTACACTTGTGT+AGG | 0.519444 | 1_4:-38067365 | None:intergenic |
| GAAGTGAAACTACTTCTGTA+TGG | 0.519865 | 1_4:+38065945 | Msa0161950:CDS |
| ATGACGAGGATCAGCAAGCA+TGG | 0.521837 | 1_4:-38069050 | None:intergenic |
| CAACTTTGATGGACTGGCCC+AGG | 0.526447 | 1_4:+38065310 | Msa0161950:CDS |
| TGCCCAAGTTTCCACGGGAA+AGG | 0.532593 | 1_4:-38066917 | None:intergenic |
| TACAGTGGGTGCAGAAATGC+AGG | 0.534854 | 1_4:+38065187 | Msa0161950:CDS |
| GATCAATGCCCAAGTTTCCA+CGG | 0.535570 | 1_4:-38066923 | None:intergenic |
| GGCTTTGGATGGTTCTAGGA+TGG | 0.535610 | 1_4:-38063923 | None:intergenic |
| ATTGGGCAATACTTGTTCAC+AGG | 0.536068 | 1_4:+38065923 | Msa0161950:CDS |
| CTGGGTGCCGAGACTTTACG+TGG | 0.536469 | 1_4:+38067730 | Msa0161950:CDS |
| TGCTGTGCTTACACGTGTTG+TGG | 0.536758 | 1_4:+38067395 | Msa0161950:CDS |
| CAGCTAAAGTGGAGCTTCAG+TGG | 0.537841 | 1_4:+38068799 | Msa0161950:CDS |
| ACATGAAGTATGCTTGATGC+TGG | 0.540008 | 1_4:+38069848 | Msa0161950:three_prime_UTR |
| TGCAGGTATCTGAAGTCAAA+GGG | 0.540186 | 1_4:+38066279 | Msa0161950:intron |
| AAAGTTTCCTGATGATACTC+AGG | 0.541037 | 1_4:-38064299 | None:intergenic |
| TTTGCTTCACTTCATCTGGA+AGG | 0.544585 | 1_4:+38068517 | Msa0161950:CDS |
| TTGTTTACAGGCAGTGAAGA+CGG | 0.546108 | 1_4:+38065886 | Msa0161950:intron |
| TAAGATCGCCTAACTTTGAA+AGG | 0.549278 | 1_4:-38066711 | None:intergenic |
| ATAGATTCCAAGTGGGTCAT+GGG | 0.549579 | 1_4:-38068005 | None:intergenic |
| ACAACACGTGTAAGCACAGC+AGG | 0.556703 | 1_4:-38067393 | None:intergenic |
| GTGCAGGTATCTGAAGTCAA+AGG | 0.557244 | 1_4:+38066278 | Msa0161950:intron |
| CTTCATCTGGAAGGGCTGCA+AGG | 0.561294 | 1_4:+38068526 | Msa0161950:CDS |
| AGCTTCCTGTCCCTGGTTGG+GGG | 0.561481 | 1_4:-38065267 | None:intergenic |
| TCCCAAACAAGAATGAATCA+TGG | 0.563649 | 1_4:-38069914 | None:intergenic |
| TGGAGAACCCATGACCCACT+TGG | 0.563993 | 1_4:+38067998 | Msa0161950:CDS |
| GATAATTCTGCAACGAGTCA+AGG | 0.564704 | 1_4:+38069618 | Msa0161950:three_prime_UTR |
| CATTGATCTTCCACCAGAGA+AGG | 0.567240 | 1_4:+38066938 | Msa0161950:CDS |
| TAGAAACTAACGGCTTTGGA+TGG | 0.571317 | 1_4:-38063934 | None:intergenic |
| TACACAAGTGTAATATGGCT+GGG | 0.571517 | 1_4:+38067367 | Msa0161950:CDS |
| ATCAATGCCCAAGTTTCCAC+GGG | 0.574481 | 1_4:-38066922 | None:intergenic |
| AGCTGATTTGTCTTAAGTCG+GGG | 0.574570 | 1_4:-38068781 | None:intergenic |
| TAAATCAATGTGAATTTGAG+AGG | 0.578404 | 1_4:-38066366 | None:intergenic |
| TGTTGGTAGAATTTGTTCAG+AGG | 0.580077 | 1_4:+38067780 | Msa0161950:CDS |
| AGCCATATTACACTTGTGTA+GGG | 0.583469 | 1_4:-38067364 | None:intergenic |
| TGCGAAGATTGAAAATGTTG+AGG | 0.584615 | 1_4:+38066750 | Msa0161950:CDS |
| GTTATTACGTGGCGAAATTG+TGG | 0.587459 | 1_4:-38063569 | None:intergenic |
| TCGAGAAGCAAGTGACTGGA+AGG | 0.589412 | 1_4:-38063880 | None:intergenic |
| TCTCGAAGAACCAATTAGGA+TGG | 0.590229 | 1_4:+38063897 | Msa0161950:CDS |
| TTGTCTTTCTCCGTAAGGGT+AGG | 0.590542 | 1_4:-38066389 | None:intergenic |
| ACGAGCTGCTATTAAGGTGA+AGG | 0.594799 | 1_4:+38068482 | Msa0161950:CDS |
| CTTACCATCTAAAACAGCAT+TGG | 0.603075 | 1_4:-38067469 | None:intergenic |
| GAAACTTGGCGATGCATCAG+TGG | 0.604975 | 1_4:+38069491 | Msa0161950:CDS |
| GATGGTATTATCCTTTCCCG+TGG | 0.613023 | 1_4:+38066906 | Msa0161950:CDS |
| AGAAAACAGACCTTCTCTGG+TGG | 0.613887 | 1_4:-38066948 | None:intergenic |
| TGACGAGGATCAGCAAGCAT+GGG | 0.614367 | 1_4:-38069049 | None:intergenic |
| AACAGCATTGGCAACATCAG+TGG | 0.615520 | 1_4:-38067457 | None:intergenic |
| TTTCAGGTTATAAGCACCTG+GGG | 0.615655 | 1_4:+38066519 | Msa0161950:intron |
| GACAATGCCTGTTCTCTCTG+TGG | 0.618678 | 1_4:+38068753 | Msa0161950:CDS |
| GTACAATCCACGTAAAGTCT+CGG | 0.619277 | 1_4:-38067737 | None:intergenic |
| TCGATTAAGAAGAAGAGTAG+TGG | 0.622510 | 1_4:-38063823 | None:intergenic |
| TTGGTCTTGTAGTAGAGCCG+TGG | 0.625596 | 1_4:+38069969 | Msa0161950:three_prime_UTR |
| ATGCAAAGTGAACAATGACC+CGG | 0.628706 | 1_4:-38066342 | None:intergenic |
| CAGTAGAAATAGTCTCAACA+GGG | 0.633600 | 1_4:-38067759 | None:intergenic |
| TCAGTGGCTTCAGCACGAGT+TGG | 0.636352 | 1_4:-38067441 | None:intergenic |
| AACTACTTCTGTATGGCTAG+AGG | 0.637873 | 1_4:+38065952 | Msa0161950:CDS |
| ACAGGTTATGCTGGATACAG+TGG | 0.642870 | 1_4:+38065172 | Msa0161950:intron |
| GGGTGACGAGTCAATTTCCA+CGG | 0.646689 | 1_4:-38069986 | None:intergenic |
| GAGATTCTGCAAGAAGCTGA+TGG | 0.651576 | 1_4:+38066888 | Msa0161950:CDS |
| AGAATTCAGCTACATTGACC+GGG | 0.653287 | 1_4:+38066324 | Msa0161950:CDS |
| TACCCTTACGGAGAAAGACA+AGG | 0.658374 | 1_4:+38066391 | Msa0161950:CDS |
| GTTGTCGCACATAAAATCAA+GGG | 0.659079 | 1_4:+38069673 | Msa0161950:three_prime_UTR |
| AAGAAACTTACAGGATGACG+AGG | 0.670388 | 1_4:-38069064 | None:intergenic |
| ATTTAGAACATGTTATTACG+TGG | 0.671504 | 1_4:-38063580 | None:intergenic |
| GTTTCTGACAAACAACAACT+CGG | 0.679613 | 1_4:-38069473 | None:intergenic |
| CTTGATGCTGGAAAACGTGG+TGG | 0.682004 | 1_4:+38069860 | Msa0161950:three_prime_UTR |
| CAGGTTATGCTGGATACAGT+GGG | 0.682263 | 1_4:+38065173 | Msa0161950:intron |
| TTCAGATGAAAGTACCGCAG+AGG | 0.685779 | 1_4:-38068033 | None:intergenic |
| GGAATCTATTGCATCCTCTG+CGG | 0.689133 | 1_4:+38068019 | Msa0161950:CDS |
| AGGATGCAATAGATTCCAAG+TGG | 0.691489 | 1_4:-38068013 | None:intergenic |
| ATGCTTGATGCTGGAAAACG+TGG | 0.696719 | 1_4:+38069857 | Msa0161950:three_prime_UTR |
| TAAGAAGAAGAGTAGTGGTG+CGG | 0.701570 | 1_4:-38063818 | None:intergenic |
| TTGATGCTGGAAAACGTGGT+GGG | 0.709261 | 1_4:+38069861 | Msa0161950:three_prime_UTR |
| GGATGCAATAGATTCCAAGT+GGG | 0.711107 | 1_4:-38068012 | None:intergenic |
| GCATGCTAAAGATGTCCGCG+AGG | 0.768045 | 1_4:+38066584 | Msa0161950:CDS |
| CCTTACGGAGAAAGACAAGG+AGG | 0.770306 | 1_4:+38066394 | Msa0161950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTTTTTTTTTT+TGG | - | chr1_4:38066215-38066234 | None:intergenic | 0.0% |
| !!! | TTTGTAATAATTGATTTAAT+TGG | + | chr1_4:38064022-38064041 | Msa0161950:intron | 10.0% |
| !! | AACAATAGAAAATAAAATTA+AGG | + | chr1_4:38064669-38064688 | Msa0161950:intron | 10.0% |
| !! | ATTTATTAATAAATACCAAT+AGG | + | chr1_4:38065425-38065444 | Msa0161950:intron | 10.0% |
| !! | AAATATAAACTTAGAATAAA+CGG | - | chr1_4:38066115-38066134 | None:intergenic | 10.0% |
| !!! | TATTATTTTAATTATGCTTT+TGG | - | chr1_4:38066174-38066193 | None:intergenic | 10.0% |
| !!! | TATTTATTTATTATCTTTTC+AGG | + | chr1_4:38066503-38066522 | Msa0161950:intron | 10.0% |
| !! | AGAAAATACTAAAAAAAATA+AGG | - | chr1_4:38068064-38068083 | None:intergenic | 10.0% |
| !! | AAAATGTAAAATTTCAGATA+AGG | - | chr1_4:38064833-38064852 | None:intergenic | 15.0% |
| !!! | ACTATATATATATTTGGAAT+CGG | + | chr1_4:38065398-38065417 | Msa0161950:intron | 15.0% |
| !! | CTATAAATTGTGTAAATATA+TGG | + | chr1_4:38065707-38065726 | Msa0161950:intron | 15.0% |
| !! | CAATAAAGAATTTGAAAATT+AGG | - | chr1_4:38065869-38065888 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAATTGACCTAT+TGG | - | chr1_4:38066001-38066020 | None:intergenic | 15.0% |
| !!! | AACAGTAAATAAGTTTATTT+TGG | + | chr1_4:38067021-38067040 | Msa0161950:intron | 15.0% |
| !!! | ATTAATTTTGTTTAACATGT+TGG | + | chr1_4:38067818-38067837 | Msa0161950:intron | 15.0% |
| !!! | ATTTCTTTATTGTGATTTTA+TGG | + | chr1_4:38067851-38067870 | Msa0161950:intron | 15.0% |
| !!! | AGTTCTAGTATATTTTTTTT+TGG | + | chr1_4:38069562-38069581 | Msa0161950:three_prime_UTR | 15.0% |
| !!! | GTTCTAGTATATTTTTTTTT+GGG | + | chr1_4:38069563-38069582 | Msa0161950:three_prime_UTR | 15.0% |
| !! | AAATATTAAACCGAAAATAT+TGG | - | chr1_4:38069722-38069741 | None:intergenic | 15.0% |
| !! | CAAAAAATGGAAAATATAAT+GGG | - | chr1_4:38069819-38069838 | None:intergenic | 15.0% |
| !! | ACAAAAAATGGAAAATATAA+TGG | - | chr1_4:38069820-38069839 | None:intergenic | 15.0% |
| !!! | TAGTATAGTTTTAATTAGTT+AGG | + | chr1_4:38069938-38069957 | Msa0161950:three_prime_UTR | 15.0% |
| !!! | AGTATAGTTTTAATTAGTTA+GGG | + | chr1_4:38069939-38069958 | Msa0161950:three_prime_UTR | 15.0% |
| !!! | ACTGTTTTTTTTCAATTCAA+AGG | + | chr1_4:38063751-38063770 | Msa0161950:five_prime_UTR | 20.0% |
| !!! | CTGTTTTTTTTCAATTCAAA+GGG | + | chr1_4:38063752-38063771 | Msa0161950:five_prime_UTR | 20.0% |
| !! | GAAAAAGTAATAGAAACTAA+CGG | - | chr1_4:38063947-38063966 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATCATGAATTAG+TGG | + | chr1_4:38064204-38064223 | Msa0161950:intron | 20.0% |
| !!! | TTTCAATTTTTTGCTACTTA+TGG | + | chr1_4:38064401-38064420 | Msa0161950:intron | 20.0% |
| !! | GATTCCAAATATATATATAG+TGG | - | chr1_4:38065399-38065418 | None:intergenic | 20.0% |
| !! | TCAAATTCTTTATTGTTTAC+AGG | + | chr1_4:38065874-38065893 | Msa0161950:intron | 20.0% |
| !! | TTGAATTGAAAAACATAAGT+AGG | + | chr1_4:38066147-38066166 | Msa0161950:intron | 20.0% |
| !! | TGCATTAAAATATCATATGA+AGG | - | chr1_4:38066679-38066698 | None:intergenic | 20.0% |
| !!! | TTCATATGATATTTTAATGC+AGG | + | chr1_4:38066678-38066697 | Msa0161950:intron | 20.0% |
| !! | CGTATAAGTTATATTCTTAT+TGG | + | chr1_4:38066794-38066813 | Msa0161950:intron | 20.0% |
| !!! | TGGAATGTATTTTTTAAATG+TGG | - | chr1_4:38067060-38067079 | None:intergenic | 20.0% |
| !! | TGCATACTTATAAATTGTAA+TGG | + | chr1_4:38067155-38067174 | Msa0161950:intron | 20.0% |
| !! | TAGAATATAGTTATCATGAA+GGG | - | chr1_4:38067235-38067254 | None:intergenic | 20.0% |
| !! | CTAACTGTTAATAAATAAAC+AGG | + | chr1_4:38067691-38067710 | Msa0161950:intron | 20.0% |
| !!! | CTTTTTTAAGAAATAGCTTA+TGG | - | chr1_4:38068239-38068258 | None:intergenic | 20.0% |
| !! | TGTTTAGATAGAAAATCTTA+AGG | - | chr1_4:38068693-38068712 | None:intergenic | 20.0% |
| !! | ATCAAATGAATCTATTCTTA+AGG | + | chr1_4:38069404-38069423 | Msa0161950:CDS | 20.0% |
| !!! | CCAATTTTTTCCAATATTTT+CGG | + | chr1_4:38069709-38069728 | Msa0161950:three_prime_UTR | 20.0% |
| !!! | GTATAGTTTTAATTAGTTAG+GGG | + | chr1_4:38069940-38069959 | Msa0161950:three_prime_UTR | 20.0% |
| !! | ATTTAGAACATGTTATTACG+TGG | - | chr1_4:38063583-38063602 | None:intergenic | 25.0% |
| !! | GGATAGTTAATGATTTTATG+TGG | + | chr1_4:38064225-38064244 | Msa0161950:intron | 25.0% |
| ! | AATTTGAAGACTGCTATTAA+GGG | + | chr1_4:38064326-38064345 | Msa0161950:CDS | 25.0% |
| !!! | GGAAAGAAATTTTGTTATGT+TGG | - | chr1_4:38064461-38064480 | None:intergenic | 25.0% |
| ! | AACGTTAAAACGCTAAAAAT+AGG | - | chr1_4:38064482-38064501 | None:intergenic | 25.0% |
| !! | AGTGTTGTTAAATAAAGTAG+CGG | - | chr1_4:38064638-38064657 | None:intergenic | 25.0% |
| ! | CAGTAAACATACAAAAACAA+TGG | - | chr1_4:38065007-38065026 | None:intergenic | 25.0% |
| ! | GCTTCCACTATATATATATT+TGG | + | chr1_4:38065392-38065411 | Msa0161950:intron | 25.0% |
| ! | TTGAAATCCTTCATGTTATT+CGG | - | chr1_4:38065582-38065601 | None:intergenic | 25.0% |
| ! | ATGAAGAACAAATTTCATGT+GGG | - | chr1_4:38065788-38065807 | None:intergenic | 25.0% |
| ! | TAAATCAATGTGAATTTGAG+AGG | - | chr1_4:38066369-38066388 | None:intergenic | 25.0% |
| ! | CTTAATATAAATTGAGCATG+AGG | - | chr1_4:38066646-38066665 | None:intergenic | 25.0% |
| !! | AAGTTATATTCTTATTGGCT+AGG | + | chr1_4:38066799-38066818 | Msa0161950:intron | 25.0% |
| !!! | TTACATCTGTTTTGTTTCTT+AGG | + | chr1_4:38066848-38066867 | Msa0161950:intron | 25.0% |
| !!! | TACATCTGTTTTGTTTCTTA+GGG | + | chr1_4:38066849-38066868 | Msa0161950:intron | 25.0% |
| !!! | TTCTTTTATTTGTGAGCTTT+TGG | - | chr1_4:38067114-38067133 | None:intergenic | 25.0% |
| ! | CTAGAATATAGTTATCATGA+AGG | - | chr1_4:38067236-38067255 | None:intergenic | 25.0% |
| ! | AGATAAATTAATGCAACAGT+AGG | - | chr1_4:38067301-38067320 | None:intergenic | 25.0% |
| !!! | ATCAAGACCTTTATTTTAAG+AGG | + | chr1_4:38067961-38067980 | Msa0161950:CDS | 25.0% |
| ! | ACACACACACAATAAAATAA+AGG | - | chr1_4:38068095-38068114 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTATGTGATTGA+TGG | + | chr1_4:38068140-38068159 | Msa0161950:intron | 25.0% |
| !!! | ACAAGTTTTATAAGCTATTC+TGG | + | chr1_4:38068279-38068298 | Msa0161950:intron | 25.0% |
| ! | CAAATATATAAAAGCCAGTT+TGG | - | chr1_4:38068423-38068442 | None:intergenic | 25.0% |
| ! | TCAGATGGAATTTACTATTA+AGG | - | chr1_4:38068901-38068920 | None:intergenic | 25.0% |
| !! | TATATTTTCTGTTCATCAGA+TGG | - | chr1_4:38068916-38068935 | None:intergenic | 25.0% |
| ! | GAACAGAAAATATATTGACA+AGG | + | chr1_4:38068922-38068941 | Msa0161950:intron | 25.0% |
| !!! | ATTGACAAGGATGTATTTTT+TGG | + | chr1_4:38068935-38068954 | Msa0161950:intron | 25.0% |
| ! | TCTCTTATAGTACTAAATTC+AGG | + | chr1_4:38069218-38069237 | Msa0161950:intron | 25.0% |
| ! | TTTGATCACTGAATTATTAC+TGG | + | chr1_4:38069651-38069670 | Msa0161950:three_prime_UTR | 25.0% |
| ! | TTGGAAAAAATTGGTATCAA+GGG | - | chr1_4:38069703-38069722 | None:intergenic | 25.0% |
| ! | ATTGGAAAAAATTGGTATCA+AGG | - | chr1_4:38069704-38069723 | None:intergenic | 25.0% |
| ! | CCGAAAATATTGGAAAAAAT+TGG | - | chr1_4:38069712-38069731 | None:intergenic | 25.0% |
| ! | ATGTTCATGATCACAAAAAA+TGG | - | chr1_4:38069832-38069851 | None:intergenic | 25.0% |
| !! | AATTAGTTAGGGGTAAATTT+TGG | + | chr1_4:38069950-38069969 | Msa0161950:three_prime_UTR | 25.0% |
| GATACTGTCTTAGGTAATTT+GGG | - | chr1_4:38063639-38063658 | None:intergenic | 30.0% | |
| TGATACTGTCTTAGGTAATT+TGG | - | chr1_4:38063640-38063659 | None:intergenic | 30.0% | |
| ! | ATTGTTGTTGTTGTTGATGA+TGG | + | chr1_4:38064046-38064065 | Msa0161950:intron | 30.0% |
| ACAAAGATTGTTGGAACATT+GGG | + | chr1_4:38064096-38064115 | Msa0161950:CDS | 30.0% | |
| !!! | TTGCTCGTTTTGATTTTTCA+TGG | + | chr1_4:38064270-38064289 | Msa0161950:CDS | 30.0% |
| GAATTTGAAGACTGCTATTA+AGG | + | chr1_4:38064325-38064344 | Msa0161950:CDS | 30.0% | |
| !!! | GTTTGTTTTATGCTGAAAGA+AGG | + | chr1_4:38064435-38064454 | Msa0161950:intron | 30.0% |
| AATTTCAGATAAGGTAACAC+AGG | - | chr1_4:38064824-38064843 | None:intergenic | 30.0% | |
| ! | GTTTACTGTCAATTTTCTCA+AGG | + | chr1_4:38065019-38065038 | Msa0161950:intron | 30.0% |
| AAAAGCGAGAATATGGAAAT+TGG | - | chr1_4:38065077-38065096 | None:intergenic | 30.0% | |
| !! | TTCACAAAGGTTTTATGTTG+AGG | + | chr1_4:38065101-38065120 | Msa0161950:intron | 30.0% |
| TTTATGTTGAGGATCAATGA+TGG | + | chr1_4:38065112-38065131 | Msa0161950:intron | 30.0% | |
| TTATGTTGAGGATCAATGAT+GGG | + | chr1_4:38065113-38065132 | Msa0161950:intron | 30.0% | |
| ATATTGCCAATCAACTTTGA+TGG | + | chr1_4:38065299-38065318 | Msa0161950:CDS | 30.0% | |
| CACATCATATAATGATGACA+AGG | - | chr1_4:38065353-38065372 | None:intergenic | 30.0% | |
| CAAAACTAGCCATCATAAAT+TGG | + | chr1_4:38065506-38065525 | Msa0161950:intron | 30.0% | |
| !!! | TTTTTTTTGTGTAGCAGTTG+TGG | - | chr1_4:38065535-38065554 | None:intergenic | 30.0% |
| !!! | GATTTCAATTTTTTTGCCCA+TGG | + | chr1_4:38065594-38065613 | Msa0161950:intron | 30.0% |
| ! | TCAATTTTTCTTTCCTCTCA+GGG | + | chr1_4:38065666-38065685 | Msa0161950:intron | 30.0% |
| CATGAAGAACAAATTTCATG+TGG | - | chr1_4:38065789-38065808 | None:intergenic | 30.0% | |
| GTTGCAAACTTTATTCCAAT+AGG | + | chr1_4:38065983-38066002 | Msa0161950:intron | 30.0% | |
| ! | AATTCATAACCCAAGTTGAA+AGG | - | chr1_4:38066066-38066085 | None:intergenic | 30.0% |
| !! | GGTAAGTTCCATTTTTCATT+TGG | + | chr1_4:38066415-38066434 | Msa0161950:intron | 30.0% |
| TCACACATCCAAATGAAAAA+TGG | - | chr1_4:38066426-38066445 | None:intergenic | 30.0% | |
| !!! | AATTTTGTTTTTAACTCCCC+AGG | - | chr1_4:38066538-38066557 | None:intergenic | 30.0% |
| TTCTGTCATTGTCATATACT+AGG | + | chr1_4:38066562-38066581 | Msa0161950:CDS | 30.0% | |
| TCCAGATTGTTTACTTGAAT+TGG | + | chr1_4:38066617-38066636 | Msa0161950:intron | 30.0% | |
| ACCAATTCAAGTAAACAATC+TGG | - | chr1_4:38066621-38066640 | None:intergenic | 30.0% | |
| !!! | ATGATATTTTAATGCAGGCT+CGG | + | chr1_4:38066683-38066702 | Msa0161950:intron | 30.0% |
| TTGCAGAATCTCATCAAAAT+GGG | - | chr1_4:38066880-38066899 | None:intergenic | 30.0% | |
| AAATACATTCCAGACATCTA+TGG | + | chr1_4:38067068-38067087 | Msa0161950:intron | 30.0% | |
| TAACTTCCATTTGTATTTGC+AGG | + | chr1_4:38067320-38067339 | Msa0161950:intron | 30.0% | |
| GAAAAACCTGCAAATACAAA+TGG | - | chr1_4:38067329-38067348 | None:intergenic | 30.0% | |
| AGAAGGTCGTATAAATTAAC+AGG | - | chr1_4:38067563-38067582 | None:intergenic | 30.0% | |
| TTAGACAAACATACATCAAG+TGG | - | chr1_4:38067675-38067694 | None:intergenic | 30.0% | |
| ! | TTGTGATTTTATGGTTTCTG+TGG | + | chr1_4:38067860-38067879 | Msa0161950:intron | 30.0% |
| ! | TGTGATTTTATGGTTTCTGT+GGG | + | chr1_4:38067861-38067880 | Msa0161950:intron | 30.0% |
| GTCTTGATTGAAAACTTTCT+CGG | - | chr1_4:38067949-38067968 | None:intergenic | 30.0% | |
| TGACTGTCCTCTTAAAATAA+AGG | - | chr1_4:38067971-38067990 | None:intergenic | 30.0% | |
| TCACATAACAAAAAAGCAGT+AGG | - | chr1_4:38068136-38068155 | None:intergenic | 30.0% | |
| ! | TTTGTTATGTGATTGATGGA+TGG | + | chr1_4:38068144-38068163 | Msa0161950:intron | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1_4:38068177-38068196 | None:intergenic | 30.0% | |
| CAAATAAGTCAAATCCAAAC+TGG | + | chr1_4:38068406-38068425 | Msa0161950:intron | 30.0% | |
| !! | ATAATTTGCTTCACTTCATC+TGG | + | chr1_4:38068513-38068532 | Msa0161950:CDS | 30.0% |
| GAAAATCTTAAGGACATAAC+TGG | - | chr1_4:38068683-38068702 | None:intergenic | 30.0% | |
| TCAGATTGATTGCAAAGTAT+AGG | + | chr1_4:38068728-38068747 | Msa0161950:intron | 30.0% | |
| !! | TTAGCTGATTTGTCTTAAGT+CGG | - | chr1_4:38068786-38068805 | None:intergenic | 30.0% |
| TTAAGACAAATCAGCTAAAG+TGG | + | chr1_4:38068788-38068807 | Msa0161950:CDS | 30.0% | |
| TTCTATCTGTTAATTATCCC+TGG | + | chr1_4:38068862-38068881 | Msa0161950:intron | 30.0% | |
| ! | ATTAGTTTGATACAGAAAGG+TGG | - | chr1_4:38068972-38068991 | None:intergenic | 30.0% |
| ! | CTCATTAGTTTGATACAGAA+AGG | - | chr1_4:38068975-38068994 | None:intergenic | 30.0% |
| CTTTCTGTATCAAACTAATG+AGG | + | chr1_4:38068973-38068992 | Msa0161950:intron | 30.0% | |
| TTGTGGAAAAAGAAACTTAC+AGG | - | chr1_4:38069076-38069095 | None:intergenic | 30.0% | |
| AGAACTAAAACTGTGAATTG+TGG | - | chr1_4:38069093-38069112 | None:intergenic | 30.0% | |
| TATCACTCTATCATGATTCA+TGG | + | chr1_4:38069192-38069211 | Msa0161950:intron | 30.0% | |
| ATATGAATGATAGCACAAAG+TGG | - | chr1_4:38069278-38069297 | None:intergenic | 30.0% | |
| TATACTAGAACTAGAACTGT+TGG | - | chr1_4:38069554-38069573 | None:intergenic | 30.0% | |
| TCTGCAACTTTCAAAAACTT+GGG | - | chr1_4:38069600-38069619 | None:intergenic | 30.0% | |
| ATCTGCAACTTTCAAAAACT+TGG | - | chr1_4:38069601-38069620 | None:intergenic | 30.0% | |
| TGGAAAAAATTGGTATCAAG+GGG | - | chr1_4:38069702-38069721 | None:intergenic | 30.0% | |
| TACCATGATTCATTCTTGTT+TGG | + | chr1_4:38069912-38069931 | Msa0161950:three_prime_UTR | 30.0% | |
| ! | ACCATGATTCATTCTTGTTT+GGG | + | chr1_4:38069913-38069932 | Msa0161950:three_prime_UTR | 30.0% |
| !! | TAATTTGGGTAGTGGAATTC+TGG | - | chr1_4:38063625-38063644 | None:intergenic | 35.0% |
| TTTCACAGTGATACTGTCTT+AGG | - | chr1_4:38063648-38063667 | None:intergenic | 35.0% | |
| !! | ATCTTCAAGTTGCGTTTGTT+TGG | + | chr1_4:38063780-38063799 | Msa0161950:five_prime_UTR | 35.0% |
| TCGATTAAGAAGAAGAGTAG+TGG | - | chr1_4:38063826-38063845 | None:intergenic | 35.0% | |
| GTAATAGAAACTAACGGCTT+TGG | - | chr1_4:38063941-38063960 | None:intergenic | 35.0% | |
| TCTGCAATGACAAAGATTGT+TGG | + | chr1_4:38064087-38064106 | Msa0161950:CDS | 35.0% | |
| GACAAAGATTGTTGGAACAT+TGG | + | chr1_4:38064095-38064114 | Msa0161950:CDS | 35.0% | |
| ! | ATTTCTGGATGTCTTAAAGC+TGG | + | chr1_4:38064144-38064163 | Msa0161950:CDS | 35.0% |
| AAAGTTTCCTGATGATACTC+AGG | - | chr1_4:38064302-38064321 | None:intergenic | 35.0% | |
| TGAGTATCATCAGGAAACTT+TGG | + | chr1_4:38064301-38064320 | Msa0161950:CDS | 35.0% | |
| AAAAAGTGAAGCAGCAGATA+AGG | - | chr1_4:38064383-38064402 | None:intergenic | 35.0% | |
| ATAAGGTAACACAGGTTTCA+GGG | - | chr1_4:38064816-38064835 | None:intergenic | 35.0% | |
| GTTTAGAAGAATGTGCAACA+AGG | + | chr1_4:38064854-38064873 | Msa0161950:intron | 35.0% | |
| GCATTAGATTTCGGAATAGT+TGG | - | chr1_4:38064938-38064957 | None:intergenic | 35.0% | |
| ATTCCGAAATCTAATGCAGT+TGG | + | chr1_4:38064941-38064960 | Msa0161950:intron | 35.0% | |
| ACACCAACTGCATTAGATTT+CGG | - | chr1_4:38064947-38064966 | None:intergenic | 35.0% | |
| ! | GTTAAGTGAAAGCATGTGAA+TGG | + | chr1_4:38064965-38064984 | Msa0161950:intron | 35.0% |
| TTACTCTGATTGTCTTTGAC+AGG | + | chr1_4:38065154-38065173 | Msa0161950:intron | 35.0% | |
| !! | TGAAAAGTGTCAATGAACCT+GGG | - | chr1_4:38065330-38065349 | None:intergenic | 35.0% |
| TTGTGGTGACCAATTTATGA+TGG | - | chr1_4:38065518-38065537 | None:intergenic | 35.0% | |
| AAATCCTTCATGTTATTCGG+TGG | - | chr1_4:38065579-38065598 | None:intergenic | 35.0% | |
| ! | GTCAATTTTTCTTTCCTCTC+AGG | + | chr1_4:38065665-38065684 | Msa0161950:intron | 35.0% |
| !!! | ACGGGAGACACTATTTTTAT+TGG | + | chr1_4:38065905-38065924 | Msa0161950:CDS | 35.0% |
| !!! | CGGGAGACACTATTTTTATT+GGG | + | chr1_4:38065906-38065925 | Msa0161950:CDS | 35.0% |
| GAAGTGAAACTACTTCTGTA+TGG | + | chr1_4:38065945-38065964 | Msa0161950:CDS | 35.0% | |
| TTGTCTAAGTCCTTTCAACT+TGG | + | chr1_4:38066053-38066072 | Msa0161950:intron | 35.0% | |
| TGTCTAAGTCCTTTCAACTT+GGG | + | chr1_4:38066054-38066073 | Msa0161950:intron | 35.0% | |
| TTTACATGCATGATGACTGA+TGG | + | chr1_4:38066240-38066259 | Msa0161950:intron | 35.0% | |
| TTACATGCATGATGACTGAT+GGG | + | chr1_4:38066241-38066260 | Msa0161950:intron | 35.0% | |
| AAGAATTCAGCTACATTGAC+CGG | + | chr1_4:38066323-38066342 | Msa0161950:CDS | 35.0% | |
| !! | CATTGATTTACCTACCCTTA+CGG | + | chr1_4:38066379-38066398 | Msa0161950:CDS | 35.0% |
| !!! | TTTTCAGGTTATAAGCACCT+GGG | + | chr1_4:38066518-38066537 | Msa0161950:intron | 35.0% |
| !!! | TGATATTTTAATGCAGGCTC+GGG | + | chr1_4:38066684-38066703 | Msa0161950:intron | 35.0% |
| TAAGATCGCCTAACTTTGAA+AGG | - | chr1_4:38066714-38066733 | None:intergenic | 35.0% | |
| TCTTCGCAAAAATTTGTGTC+TGG | - | chr1_4:38066738-38066757 | None:intergenic | 35.0% | |
| TGCGAAGATTGAAAATGTTG+AGG | + | chr1_4:38066750-38066769 | Msa0161950:CDS | 35.0% | |
| CTTGCAGAATCTCATCAAAA+TGG | - | chr1_4:38066881-38066900 | None:intergenic | 35.0% | |
| ATCATGAAGGGCAAATTCAT+AGG | - | chr1_4:38067223-38067242 | None:intergenic | 35.0% | |
| AGCCATATTACACTTGTGTA+GGG | - | chr1_4:38067367-38067386 | None:intergenic | 35.0% | |
| TACACAAGTGTAATATGGCT+GGG | + | chr1_4:38067367-38067386 | Msa0161950:CDS | 35.0% | |
| ! | CTTACCATCTAAAACAGCAT+TGG | - | chr1_4:38067472-38067491 | None:intergenic | 35.0% |
| !! | TGTTTTAGATGGTAAGTTGC+TGG | + | chr1_4:38067476-38067495 | Msa0161950:intron | 35.0% |
| ! | GTTATCTGATGCAGCTTTTT+CGG | + | chr1_4:38067498-38067517 | Msa0161950:intron | 35.0% |
| !!! | TTTTTCGGTTGGTGAATACT+AGG | + | chr1_4:38067513-38067532 | Msa0161950:intron | 35.0% |
| AAAACACAGTACACACACAT+TGG | - | chr1_4:38067644-38067663 | None:intergenic | 35.0% | |
| !!! | TGTGTGTACTGTGTTTTAGT+TGG | + | chr1_4:38067647-38067666 | Msa0161950:intron | 35.0% |
| CAGTAGAAATAGTCTCAACA+GGG | - | chr1_4:38067762-38067781 | None:intergenic | 35.0% | |
| ACAGTAGAAATAGTCTCAAC+AGG | - | chr1_4:38067763-38067782 | None:intergenic | 35.0% | |
| !! | GTTGAGACTATTTCTACTGT+TGG | + | chr1_4:38067763-38067782 | Msa0161950:CDS | 35.0% |
| ! | TGTTGGTAGAATTTGTTCAG+AGG | + | chr1_4:38067780-38067799 | Msa0161950:CDS | 35.0% |
| AAGAGGACAGTCAAATATGT+TGG | + | chr1_4:38067978-38067997 | Msa0161950:CDS | 35.0% | |
| AATAAGCTGGATGCAACTTA+TGG | + | chr1_4:38068314-38068333 | Msa0161950:intron | 35.0% | |
| AAGCACTAGTAAGACTGTTT+GGG | - | chr1_4:38068369-38068388 | None:intergenic | 35.0% | |
| TAAGCACTAGTAAGACTGTT+TGG | - | chr1_4:38068370-38068389 | None:intergenic | 35.0% | |
| CGTGCAAATCTTTACTTGTT+AGG | + | chr1_4:38068458-38068477 | Msa0161950:intron | 35.0% | |
| TGAATCAATCGTTCTCAACT+TGG | + | chr1_4:38068598-38068617 | Msa0161950:intron | 35.0% | |
| GAATCAATCGTTCTCAACTT+GGG | + | chr1_4:38068599-38068618 | Msa0161950:intron | 35.0% | |
| AGGTCAAAAAAGATCAGTAC+GGG | - | chr1_4:38068654-38068673 | None:intergenic | 35.0% | |
| CAGGTCAAAAAAGATCAGTA+CGG | - | chr1_4:38068655-38068674 | None:intergenic | 35.0% | |
| !! | TAGCTGATTTGTCTTAAGTC+GGG | - | chr1_4:38068785-38068804 | None:intergenic | 35.0% |
| GGAAATTAAACTTGTGACAC+AGG | + | chr1_4:38068994-38069013 | Msa0161950:intron | 35.0% | |
| AGGCAATCACTTATTGTAAG+AGG | + | chr1_4:38069019-38069038 | Msa0161950:CDS | 35.0% | |
| GTTCTGTTGAGATTGTTCTT+TGG | + | chr1_4:38069133-38069152 | Msa0161950:intron | 35.0% | |
| GTTTCTGACAAACAACAACT+CGG | - | chr1_4:38069476-38069495 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTTGTCAGAAACT+TGG | + | chr1_4:38069477-38069496 | Msa0161950:CDS | 35.0% |
| GTTGTCGCACATAAAATCAA+GGG | + | chr1_4:38069673-38069692 | Msa0161950:three_prime_UTR | 35.0% | |
| GGAAAAAATTGGTATCAAGG+GGG | - | chr1_4:38069701-38069720 | None:intergenic | 35.0% | |
| TAATGGGACATATGCATAGT+TGG | - | chr1_4:38069803-38069822 | None:intergenic | 35.0% | |
| TCCCAAACAAGAATGAATCA+TGG | - | chr1_4:38069917-38069936 | None:intergenic | 35.0% | |
| GTTATTACGTGGCGAAATTG+TGG | - | chr1_4:38063572-38063591 | None:intergenic | 40.0% | |
| GTCTTAGGTAATTTGGGTAG+TGG | - | chr1_4:38063633-38063652 | None:intergenic | 40.0% | |
| TAAGAAGAAGAGTAGTGGTG+CGG | - | chr1_4:38063821-38063840 | None:intergenic | 40.0% | |
| TGCTTCTCGAAGAACCAATT+AGG | + | chr1_4:38063893-38063912 | Msa0161950:CDS | 40.0% | |
| TCTCGAAGAACCAATTAGGA+TGG | + | chr1_4:38063897-38063916 | Msa0161950:CDS | 40.0% | |
| !! | TAGAAACTAACGGCTTTGGA+TGG | - | chr1_4:38063937-38063956 | None:intergenic | 40.0% |
| GTCTCAACAGATCGAGATTT+AGG | - | chr1_4:38064123-38064142 | None:intergenic | 40.0% | |
| CGATCTGTTGAGACTATTTC+TGG | + | chr1_4:38064129-38064148 | Msa0161950:CDS | 40.0% | |
| GATAAGGTAACACAGGTTTC+AGG | - | chr1_4:38064817-38064836 | None:intergenic | 40.0% | |
| TTTGTGAATCAATGACCACG+TGG | - | chr1_4:38064893-38064912 | None:intergenic | 40.0% | |
| GAAGCAGAAAAGCGAGAATA+TGG | - | chr1_4:38065084-38065103 | None:intergenic | 40.0% | |
| ! | TTGAGGATCAATGATGGGAA+AGG | + | chr1_4:38065118-38065137 | Msa0161950:intron | 40.0% |
| TTGTCTTTGACAGGTTATGC+TGG | + | chr1_4:38065163-38065182 | Msa0161950:intron | 40.0% | |
| !! | GTGAAAAGTGTCAATGAACC+TGG | - | chr1_4:38065331-38065350 | None:intergenic | 40.0% |
| GGTGGAAGCAAATGATGTAA+GGG | - | chr1_4:38065561-38065580 | None:intergenic | 40.0% | |
| ! | AGTCAAAGCATTCACTCCAT+GGG | - | chr1_4:38065613-38065632 | None:intergenic | 40.0% |
| ACTCAAAGCATGCACTACAT+GGG | - | chr1_4:38065647-38065666 | None:intergenic | 40.0% | |
| TTGTTTACAGGCAGTGAAGA+CGG | + | chr1_4:38065886-38065905 | Msa0161950:intron | 40.0% | |
| ATTGGGCAATACTTGTTCAC+AGG | + | chr1_4:38065923-38065942 | Msa0161950:CDS | 40.0% | |
| AACTACTTCTGTATGGCTAG+AGG | + | chr1_4:38065952-38065971 | Msa0161950:CDS | 40.0% | |
| ! | TGCAGGTATCTGAAGTCAAA+GGG | + | chr1_4:38066279-38066298 | Msa0161950:intron | 40.0% |
| AGAATTCAGCTACATTGACC+GGG | + | chr1_4:38066324-38066343 | Msa0161950:CDS | 40.0% | |
| ATGCAAAGTGAACAATGACC+CGG | - | chr1_4:38066345-38066364 | None:intergenic | 40.0% | |
| ! | TTAGCTGTGTCGAGAAGTTT+TGG | + | chr1_4:38066472-38066491 | Msa0161950:intron | 40.0% |
| ! | TAGCTGTGTCGAGAAGTTTT+GGG | + | chr1_4:38066473-38066492 | Msa0161950:intron | 40.0% |
| !!! | CTTTTCAGGTTATAAGCACC+TGG | + | chr1_4:38066517-38066536 | Msa0161950:intron | 40.0% |
| !! | TTTCAGGTTATAAGCACCTG+GGG | + | chr1_4:38066519-38066538 | Msa0161950:intron | 40.0% |
| TCAAGAAAACAGACCTTCTC+TGG | - | chr1_4:38066954-38066973 | None:intergenic | 40.0% | |
| TACATTCCAGACATCTATGG+TGG | + | chr1_4:38067071-38067090 | Msa0161950:intron | 40.0% | |
| ACATTCCAGACATCTATGGT+GGG | + | chr1_4:38067072-38067091 | Msa0161950:intron | 40.0% | |
| ! | ACTTTTCAGCATCCACCAAA+TGG | - | chr1_4:38067271-38067290 | None:intergenic | 40.0% |
| TGCCCTACACAAGTGTAATA+TGG | + | chr1_4:38067362-38067381 | Msa0161950:CDS | 40.0% | |
| CAGCCATATTACACTTGTGT+AGG | - | chr1_4:38067368-38067387 | None:intergenic | 40.0% | |
| CTACACAAGTGTAATATGGC+TGG | + | chr1_4:38067366-38067385 | Msa0161950:CDS | 40.0% | |
| !!! | GTTGCCAATGCTGTTTTAGA+TGG | + | chr1_4:38067465-38067484 | Msa0161950:CDS | 40.0% |
| TTGGTGAATACTAGGCAATC+TGG | + | chr1_4:38067521-38067540 | Msa0161950:intron | 40.0% | |
| CCTTCTCTAAGCGATGAAAA+CGG | + | chr1_4:38067577-38067596 | Msa0161950:intron | 40.0% | |
| CTTCTCTAAGCGATGAAAAC+GGG | + | chr1_4:38067578-38067597 | Msa0161950:intron | 40.0% | |
| AGGAAGTGATGCAATTCTTC+TGG | + | chr1_4:38067711-38067730 | Msa0161950:intron | 40.0% | |
| GGAAGTGATGCAATTCTTCT+GGG | + | chr1_4:38067712-38067731 | Msa0161950:intron | 40.0% | |
| GTACAATCCACGTAAAGTCT+CGG | - | chr1_4:38067740-38067759 | None:intergenic | 40.0% | |
| CTACAAGGACATGAAATGGA+AGG | - | chr1_4:38067925-38067944 | None:intergenic | 40.0% | |
| CTTCCATTTCATGTCCTTGT+AGG | + | chr1_4:38067923-38067942 | Msa0161950:intron | 40.0% | |
| ATAGATTCCAAGTGGGTCAT+GGG | - | chr1_4:38068008-38068027 | None:intergenic | 40.0% | |
| AATAGATTCCAAGTGGGTCA+TGG | - | chr1_4:38068009-38068028 | None:intergenic | 40.0% | |
| GGATGCAATAGATTCCAAGT+GGG | - | chr1_4:38068015-38068034 | None:intergenic | 40.0% | |
| AGGATGCAATAGATTCCAAG+TGG | - | chr1_4:38068016-38068035 | None:intergenic | 40.0% | |
| ! | ATGTGATTGATGGATGGTTC+TGG | + | chr1_4:38068150-38068169 | Msa0161950:intron | 40.0% |
| ! | AAGCTATTCTGGAGAGCTTA+TGG | + | chr1_4:38068290-38068309 | Msa0161950:intron | 40.0% |
| GAGAGCTTATGGAAATAAGC+TGG | + | chr1_4:38068301-38068320 | Msa0161950:intron | 40.0% | |
| TTAGGTACGAGCTGCTATTA+AGG | + | chr1_4:38068476-38068495 | Msa0161950:intron | 40.0% | |
| TTTGCTTCACTTCATCTGGA+AGG | + | chr1_4:38068517-38068536 | Msa0161950:CDS | 40.0% | |
| TTGCTTCACTTCATCTGGAA+GGG | + | chr1_4:38068518-38068537 | Msa0161950:CDS | 40.0% | |
| !! | AGCTGATTTGTCTTAAGTCG+GGG | - | chr1_4:38068784-38068803 | None:intergenic | 40.0% |
| AAGGATGTAAACAACAGCCA+GGG | - | chr1_4:38068882-38068901 | None:intergenic | 40.0% | |
| TAAGGATGTAAACAACAGCC+AGG | - | chr1_4:38068883-38068902 | None:intergenic | 40.0% | |
| TTAAACTTGTGACACAGGCA+AGG | + | chr1_4:38068999-38069018 | Msa0161950:intron | 40.0% | |
| AAGAAACTTACAGGATGACG+AGG | - | chr1_4:38069067-38069086 | None:intergenic | 40.0% | |
| GAACAATCTCAACAGAACAC+TGG | - | chr1_4:38069131-38069150 | None:intergenic | 40.0% | |
| ! | CAATGCTTTTCCATGATCGA+GGG | - | chr1_4:38069433-38069452 | None:intergenic | 40.0% |
| !! | CTCGATCATGGAAAAGCATT+GGG | + | chr1_4:38069432-38069451 | Msa0161950:CDS | 40.0% |
| GATAATTCTGCAACGAGTCA+AGG | + | chr1_4:38069618-38069637 | Msa0161950:three_prime_UTR | 40.0% | |
| GGTTGTCGCACATAAAATCA+AGG | + | chr1_4:38069672-38069691 | Msa0161950:three_prime_UTR | 40.0% | |
| ACATGAAGTATGCTTGATGC+TGG | + | chr1_4:38069848-38069867 | Msa0161950:three_prime_UTR | 40.0% | |
| !! | TGGGTAGTGGAATTCTGGTT+TGG | - | chr1_4:38063620-38063639 | None:intergenic | 45.0% |
| ! | AAGTGACTGGAAGGCATGTT+TGG | - | chr1_4:38063874-38063893 | None:intergenic | 45.0% |
| TTCTTCGAGAAGCAAGTGAC+TGG | - | chr1_4:38063887-38063906 | None:intergenic | 45.0% | |
| AGGATGGAAGCCATCCTAAT+TGG | - | chr1_4:38063910-38063929 | None:intergenic | 45.0% | |
| !! | TAACGGCTTTGGATGGTTCT+AGG | - | chr1_4:38063930-38063949 | None:intergenic | 45.0% |
| TGTCTTAAAGCTGGCATGTC+TGG | + | chr1_4:38064153-38064172 | Msa0161950:CDS | 45.0% | |
| GTGTGATCCTGAGTATCATC+AGG | + | chr1_4:38064292-38064311 | Msa0161950:CDS | 45.0% | |
| AGTGAAGCAGCAGATAAGGA+AGG | - | chr1_4:38064379-38064398 | None:intergenic | 45.0% | |
| GTGTTGTCAATTGCTGATCG+CGG | + | chr1_4:38064522-38064541 | Msa0161950:intron | 45.0% | |
| !! | AGAGCTATAGCACTGATGTG+CGG | - | chr1_4:38064557-38064576 | None:intergenic | 45.0% |
| CTAACATGCTCCCTCATTCA+CGG | + | chr1_4:38064752-38064771 | Msa0161950:intron | 45.0% | |
| TAACATGCTCCCTCATTCAC+GGG | + | chr1_4:38064753-38064772 | Msa0161950:intron | 45.0% | |
| AAACAAAGGCCCGTGAATGA+GGG | - | chr1_4:38064765-38064784 | None:intergenic | 45.0% | |
| ! | TCATTCACGGGCCTTTGTTT+GGG | + | chr1_4:38064765-38064784 | Msa0161950:intron | 45.0% |
| ACACTTGAAGCCCCAAACAA+AGG | - | chr1_4:38064779-38064798 | None:intergenic | 45.0% | |
| ! | TTTGTTTGGGGCTTCAAGTG+TGG | + | chr1_4:38064778-38064797 | Msa0161950:intron | 45.0% |
| !! | CTCGCTTTTCTGCTTCACAA+AGG | + | chr1_4:38065088-38065107 | Msa0161950:intron | 45.0% |
| ACAGGTTATGCTGGATACAG+TGG | + | chr1_4:38065172-38065191 | Msa0161950:intron | 45.0% | |
| CAGGTTATGCTGGATACAGT+GGG | + | chr1_4:38065173-38065192 | Msa0161950:intron | 45.0% | |
| CTCACTTGAGATAGATGCTC+AGG | + | chr1_4:38065235-38065254 | Msa0161950:CDS | 45.0% | |
| ! | GCCAATCAACTTTGATGGAC+TGG | + | chr1_4:38065304-38065323 | Msa0161950:CDS | 45.0% |
| ! | GCCAGTCCATCAAAGTTGAT+TGG | - | chr1_4:38065308-38065327 | None:intergenic | 45.0% |
| TGCACATCTTGTGCTCCTAT+TGG | - | chr1_4:38065443-38065462 | None:intergenic | 45.0% | |
| CGGTGGAAGCAAATGATGTA+AGG | - | chr1_4:38065562-38065581 | None:intergenic | 45.0% | |
| GCTTCCACCGAATAACATGA+AGG | + | chr1_4:38065572-38065591 | Msa0161950:intron | 45.0% | |
| ! | GAGTCAAAGCATTCACTCCA+TGG | - | chr1_4:38065614-38065633 | None:intergenic | 45.0% |
| GACTCAAAGCATGCACTACA+TGG | - | chr1_4:38065648-38065667 | None:intergenic | 45.0% | |
| TGTTTACAGGCAGTGAAGAC+GGG | + | chr1_4:38065887-38065906 | Msa0161950:intron | 45.0% | |
| TCAGATACCTGCACAACATC+AGG | - | chr1_4:38066272-38066291 | None:intergenic | 45.0% | |
| ! | GTGCAGGTATCTGAAGTCAA+AGG | + | chr1_4:38066278-38066297 | Msa0161950:intron | 45.0% |
| TTGTCTTTCTCCGTAAGGGT+AGG | - | chr1_4:38066392-38066411 | None:intergenic | 45.0% | |
| TACCCTTACGGAGAAAGACA+AGG | + | chr1_4:38066391-38066410 | Msa0161950:CDS | 45.0% | |
| CTCCTTGTCTTTCTCCGTAA+GGG | - | chr1_4:38066396-38066415 | None:intergenic | 45.0% | |
| ! | AGCTGTGTCGAGAAGTTTTG+GGG | + | chr1_4:38066474-38066493 | Msa0161950:intron | 45.0% |
| CGGGACTTCCTTTCAAAGTT+AGG | + | chr1_4:38066703-38066722 | Msa0161950:CDS | 45.0% | |
| GAGATTCTGCAAGAAGCTGA+TGG | + | chr1_4:38066888-38066907 | Msa0161950:CDS | 45.0% | |
| GATGGTATTATCCTTTCCCG+TGG | + | chr1_4:38066906-38066925 | Msa0161950:CDS | 45.0% | |
| TATCCTTTCCCGTGGAAACT+TGG | + | chr1_4:38066914-38066933 | Msa0161950:CDS | 45.0% | |
| ATCCTTTCCCGTGGAAACTT+GGG | + | chr1_4:38066915-38066934 | Msa0161950:CDS | 45.0% | |
| ATCAATGCCCAAGTTTCCAC+GGG | - | chr1_4:38066925-38066944 | None:intergenic | 45.0% | |
| GATCAATGCCCAAGTTTCCA+CGG | - | chr1_4:38066926-38066945 | None:intergenic | 45.0% | |
| CATTGATCTTCCACCAGAGA+AGG | + | chr1_4:38066938-38066957 | Msa0161950:CDS | 45.0% | |
| AGAAAACAGACCTTCTCTGG+TGG | - | chr1_4:38066951-38066970 | None:intergenic | 45.0% | |
| CATTCCAGACATCTATGGTG+GGG | + | chr1_4:38067073-38067092 | Msa0161950:intron | 45.0% | |
| ATTCCAGACATCTATGGTGG+GGG | + | chr1_4:38067074-38067093 | Msa0161950:intron | 45.0% | |
| TAGAGACTGTCTCCTCCATT+TGG | + | chr1_4:38067253-38067272 | Msa0161950:intron | 45.0% | |
| TTTCAGCATCCACCAAATGG+AGG | - | chr1_4:38067268-38067287 | None:intergenic | 45.0% | |
| !! | AACAGCATTGGCAACATCAG+TGG | - | chr1_4:38067460-38067479 | None:intergenic | 45.0% |
| !!! | TCTGATGCAGCTTTTTCGGT+TGG | + | chr1_4:38067502-38067521 | Msa0161950:intron | 45.0% |
| ! | CCGTTTTCATCGCTTAGAGA+AGG | - | chr1_4:38067580-38067599 | None:intergenic | 45.0% |
| GAAAACTTTCTCGGCCTACA+AGG | - | chr1_4:38067940-38067959 | None:intergenic | 45.0% | |
| GGAATCTATTGCATCCTCTG+CGG | + | chr1_4:38068019-38068038 | Msa0161950:CDS | 45.0% | |
| !! | TTCAGATGAAAGTACCGCAG+AGG | - | chr1_4:38068036-38068055 | None:intergenic | 45.0% |
| AGACTGTTTGGGAGAGCTTA+CGG | - | chr1_4:38068358-38068377 | None:intergenic | 45.0% | |
| ACGAGCTGCTATTAAGGTGA+AGG | + | chr1_4:38068482-38068501 | Msa0161950:CDS | 45.0% | |
| ! | AAGGACATAACTGGTGATGC+AGG | - | chr1_4:38068674-38068693 | None:intergenic | 45.0% |
| ! | ACAGAGAGAACAGGCATTGT+CGG | - | chr1_4:38068754-38068773 | None:intergenic | 45.0% |
| !!! | TTCAGTGGAGCTTTTGAGGT+TGG | + | chr1_4:38068814-38068833 | Msa0161950:intron | 45.0% |
| AGAACACTGGCGATTAACAG+AGG | - | chr1_4:38069118-38069137 | None:intergenic | 45.0% | |
| TGATGCAGTGCGTGTAAAGT+AGG | - | chr1_4:38069310-38069329 | None:intergenic | 45.0% | |
| ATGTCGTATACTGTGTCTGC+AGG | + | chr1_4:38069359-38069378 | Msa0161950:intron | 45.0% | |
| ! | CCAATGCTTTTCCATGATCG+AGG | - | chr1_4:38069434-38069453 | None:intergenic | 45.0% |
| ! | CCTCGATCATGGAAAAGCAT+TGG | + | chr1_4:38069431-38069450 | Msa0161950:CDS | 45.0% |
| ATGCTTGATGCTGGAAAACG+TGG | + | chr1_4:38069857-38069876 | Msa0161950:three_prime_UTR | 45.0% | |
| TTGATGCTGGAAAACGTGGT+GGG | + | chr1_4:38069861-38069880 | Msa0161950:three_prime_UTR | 45.0% | |
| !! | AATTTATATTAAGTATTAAT+AGG | + | chr1_4:38066653-38066672 | Msa0161950:intron | 5.0% |
| TCGAGAAGCAAGTGACTGGA+AGG | - | chr1_4:38063883-38063902 | None:intergenic | 50.0% | |
| !! | GGCTTTGGATGGTTCTAGGA+TGG | - | chr1_4:38063926-38063945 | None:intergenic | 50.0% |
| CAAACAAAGGCCCGTGAATG+AGG | - | chr1_4:38064766-38064785 | None:intergenic | 50.0% | |
| CTCATTCACGGGCCTTTGTT+TGG | + | chr1_4:38064764-38064783 | Msa0161950:intron | 50.0% | |
| ! | CATTCACGGGCCTTTGTTTG+GGG | + | chr1_4:38064766-38064785 | Msa0161950:intron | 50.0% |
| GGTTCAAACTCTTGACCACG+TGG | + | chr1_4:38064875-38064894 | Msa0161950:intron | 50.0% | |
| TACAGTGGGTGCAGAAATGC+AGG | + | chr1_4:38065187-38065206 | Msa0161950:CDS | 50.0% | |
| TCTTTCCTCTCAGGGTTGCA+TGG | + | chr1_4:38065674-38065693 | Msa0161950:intron | 50.0% | |
| GGTTCTACCTGATGTTGTGC+AGG | + | chr1_4:38066262-38066281 | Msa0161950:intron | 50.0% | |
| CCTCCTTGTCTTTCTCCGTA+AGG | - | chr1_4:38066397-38066416 | None:intergenic | 50.0% | |
| CCTTACGGAGAAAGACAAGG+AGG | + | chr1_4:38066394-38066413 | Msa0161950:CDS | 50.0% | |
| CTGGAGCTCAAATTACCTCG+CGG | - | chr1_4:38066602-38066621 | None:intergenic | 50.0% | |
| AGACTGTCTCCTCCATTTGG+TGG | + | chr1_4:38067256-38067275 | Msa0161950:intron | 50.0% | |
| ACAACACGTGTAAGCACAGC+AGG | - | chr1_4:38067396-38067415 | None:intergenic | 50.0% | |
| TGCTGTGCTTACACGTGTTG+TGG | + | chr1_4:38067395-38067414 | Msa0161950:CDS | 50.0% | |
| !! | AAACGGGCTATTTGCGCTCT+CGG | + | chr1_4:38067594-38067613 | Msa0161950:intron | 50.0% |
| CGGCCTACAAGGACATGAAA+TGG | - | chr1_4:38067929-38067948 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGAGAGAG+AGG | + | chr1_4:38068104-38068123 | Msa0161950:intron | 50.0% | |
| !! | TGGATGGTTCTGGTCCTGTT+TGG | + | chr1_4:38068160-38068179 | Msa0161950:intron | 50.0% |
| GACAATGCCTGTTCTCTCTG+TGG | + | chr1_4:38068753-38068772 | Msa0161950:CDS | 50.0% | |
| GGAATCACCACAGAGAGAAC+AGG | - | chr1_4:38068763-38068782 | None:intergenic | 50.0% | |
| CAGCTAAAGTGGAGCTTCAG+TGG | + | chr1_4:38068799-38068818 | Msa0161950:CDS | 50.0% | |
| ! | GAGCTTCAGTGGAGCTTTTG+AGG | + | chr1_4:38068810-38068829 | Msa0161950:CDS | 50.0% |
| TGACGAGGATCAGCAAGCAT+GGG | - | chr1_4:38069052-38069071 | None:intergenic | 50.0% | |
| ATGACGAGGATCAGCAAGCA+TGG | - | chr1_4:38069053-38069072 | None:intergenic | 50.0% | |
| CTTAAGGTTGCCCTCGATCA+TGG | + | chr1_4:38069420-38069439 | Msa0161950:CDS | 50.0% | |
| GAAACTTGGCGATGCATCAG+TGG | + | chr1_4:38069491-38069510 | Msa0161950:CDS | 50.0% | |
| CTTGATGCTGGAAAACGTGG+TGG | + | chr1_4:38069860-38069879 | Msa0161950:three_prime_UTR | 50.0% | |
| !! | TTGGTCTTGTAGTAGAGCCG+TGG | + | chr1_4:38069969-38069988 | Msa0161950:three_prime_UTR | 50.0% |
| CGTGGCGAAATTGTGGCTGT+TGG | - | chr1_4:38063565-38063584 | None:intergenic | 55.0% | |
| GTTGTTCTGACCCCCAACCA+GGG | + | chr1_4:38065257-38065276 | Msa0161950:CDS | 55.0% | |
| AAGCTTCCTGTCCCTGGTTG+GGG | - | chr1_4:38065271-38065290 | None:intergenic | 55.0% | |
| GAAGCTTCCTGTCCCTGGTT+GGG | - | chr1_4:38065272-38065291 | None:intergenic | 55.0% | |
| AGAAGCTTCCTGTCCCTGGT+TGG | - | chr1_4:38065273-38065292 | None:intergenic | 55.0% | |
| CTGAAGAAGCTTCCTGTCCC+TGG | - | chr1_4:38065277-38065296 | None:intergenic | 55.0% | |
| !! | CAACTTTGATGGACTGGCCC+AGG | + | chr1_4:38065310-38065329 | Msa0161950:CDS | 55.0% |
| TTGAGCCATGCAACCCTGAG+AGG | - | chr1_4:38065682-38065701 | None:intergenic | 55.0% | |
| GCATGCTAAAGATGTCCGCG+AGG | + | chr1_4:38066584-38066603 | Msa0161950:CDS | 55.0% | |
| TGCCCAAGTTTCCACGGGAA+AGG | - | chr1_4:38066920-38066939 | None:intergenic | 55.0% | |
| AGACCCCCACCATAGATGTC+TGG | - | chr1_4:38067080-38067099 | None:intergenic | 55.0% | |
| ! | CATCTATGGTGGGGGTCTAG+AGG | + | chr1_4:38067082-38067101 | Msa0161950:intron | 55.0% |
| TCAGTGGCTTCAGCACGAGT+TGG | - | chr1_4:38067444-38067463 | None:intergenic | 55.0% | |
| TGGAGAACCCATGACCCACT+TGG | + | chr1_4:38067998-38068017 | Msa0161950:CDS | 55.0% | |
| CTTCATCTGGAAGGGCTGCA+AGG | + | chr1_4:38068526-38068545 | Msa0161950:CDS | 55.0% | |
| GGTTGTTCTGACCCCCAACC+AGG | + | chr1_4:38065256-38065275 | Msa0161950:CDS | 60.0% | |
| AGCTTCCTGTCCCTGGTTGG+GGG | - | chr1_4:38065270-38065289 | None:intergenic | 60.0% | |
| !! | CTGGGTGCCGAGACTTTACG+TGG | + | chr1_4:38067730-38067749 | Msa0161950:CDS | 60.0% |
| TCTGACCCCCAACCAGGGAC+AGG | + | chr1_4:38065262-38065281 | Msa0161950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38063556 | 38070005 | 38063556 | ID=Msa0161950;Name=Msa0161950 |
| chr1_4 | mRNA | 38063556 | 38070005 | 38063556 | ID=Msa0161950-mRNA-1;Parent=Msa0161950;Name=Msa0161950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=301|1|1|1|0.88|0.77|18|375|529 |
| chr1_4 | exon | 38063556 | 38063708 | 38063556 | ID=Msa0161950-mRNA-1:exon:11126;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38063729 | 38063945 | 38063729 | ID=Msa0161950-mRNA-1:exon:11127;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38064078 | 38064174 | 38064078 | ID=Msa0161950-mRNA-1:exon:11128;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38064270 | 38064367 | 38064270 | ID=Msa0161950-mRNA-1:exon:11129;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38065176 | 38065331 | 38065176 | ID=Msa0161950-mRNA-1:exon:11130;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38065896 | 38065973 | 38065896 | ID=Msa0161950-mRNA-1:exon:11131;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38066284 | 38066415 | 38066284 | ID=Msa0161950-mRNA-1:exon:11132;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38066525 | 38066605 | 38066525 | ID=Msa0161950-mRNA-1:exon:11133;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38066700 | 38066771 | 38066700 | ID=Msa0161950-mRNA-1:exon:11134;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38066870 | 38066959 | 38066870 | ID=Msa0161950-mRNA-1:exon:11135;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38067342 | 38067486 | 38067342 | ID=Msa0161950-mRNA-1:exon:11136;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38067713 | 38067801 | 38067713 | ID=Msa0161950-mRNA-1:exon:11137;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38067945 | 38068040 | 38067945 | ID=Msa0161950-mRNA-1:exon:11138;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38068480 | 38068547 | 38068480 | ID=Msa0161950-mRNA-1:exon:11139;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38068732 | 38068831 | 38068732 | ID=Msa0161950-mRNA-1:exon:11140;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38069016 | 38069075 | 38069016 | ID=Msa0161950-mRNA-1:exon:11141;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38069381 | 38069743 | 38069381 | ID=Msa0161950-mRNA-1:exon:11142;Parent=Msa0161950-mRNA-1 |
| chr1_4 | exon | 38069835 | 38070005 | 38069835 | ID=Msa0161950-mRNA-1:exon:11143;Parent=Msa0161950-mRNA-1 |
| chr1_4 | five_prime_UTR | 38063556 | 38063708 | 38063556 | ID=Msa0161950-mRNA-1:five_prime_utr;Parent=Msa0161950-mRNA-1 |
| chr1_4 | five_prime_UTR | 38063729 | 38063876 | 38063729 | ID=Msa0161950-mRNA-1:five_prime_utr;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38063877 | 38063945 | 38063877 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38064078 | 38064174 | 38064078 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38064270 | 38064367 | 38064270 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38065176 | 38065331 | 38065176 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38065896 | 38065973 | 38065896 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38066284 | 38066415 | 38066284 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38066525 | 38066605 | 38066525 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38066700 | 38066771 | 38066700 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38066870 | 38066959 | 38066870 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38067342 | 38067486 | 38067342 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38067713 | 38067801 | 38067713 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38067945 | 38068040 | 38067945 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38068480 | 38068547 | 38068480 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38068732 | 38068831 | 38068732 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38069016 | 38069075 | 38069016 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | CDS | 38069381 | 38069539 | 38069381 | ID=Msa0161950-mRNA-1:cds;Parent=Msa0161950-mRNA-1 |
| chr1_4 | three_prime_UTR | 38069540 | 38069743 | 38069540 | ID=Msa0161950-mRNA-1:three_prime_utr;Parent=Msa0161950-mRNA-1 |
| chr1_4 | three_prime_UTR | 38069835 | 38070005 | 38069835 | ID=Msa0161950-mRNA-1:three_prime_utr;Parent=Msa0161950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
