Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162230 | XP_013467750.1 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 1.41e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162230 | sp|Q8LGG8|USPAL_ARATH | 25.595 | 168 | 104 | 3 | 23 | 181 | 7 | 162 | 3.83e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162230 | A0A072VJ06 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 6.72e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0162230 | 0.830608 | 2.668314e-55 | -8.615850e-47 |
| Msa0070880 | Msa0162230 | 0.847398 | 1.185805e-59 | -8.615850e-47 |
| Msa0118780 | Msa0162230 | 0.842483 | 2.514995e-58 | -8.615850e-47 |
| Msa0162100 | Msa0162230 | 0.874463 | 6.624080e-68 | -8.615850e-47 |
| Msa0162220 | Msa0162230 | 0.903368 | 3.728642e-79 | -8.615850e-47 |
| Msa0162230 | Msa0162240 | 0.999769 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162230 | MtrunA17_Chr1g0176311 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 1.29e-139 | 387 |
| Msa0162230 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 20 | 190 | 1 | 177 | 5.15e-99 | 283 |
| Msa0162230 | MtrunA17_Chr1g0192651 | 40.741 | 162 | 83 | 3 | 23 | 184 | 10 | 158 | 2.22e-34 | 119 |
| Msa0162230 | MtrunA17_Chr1g0195661 | 37.989 | 179 | 93 | 5 | 13 | 187 | 3 | 167 | 4.30e-32 | 113 |
| Msa0162230 | MtrunA17_Chr1g0194801 | 35.294 | 170 | 94 | 5 | 17 | 183 | 2 | 158 | 6.68e-31 | 110 |
| Msa0162230 | MtrunA17_Chr5g0427291 | 35.976 | 164 | 96 | 4 | 24 | 181 | 10 | 170 | 1.36e-27 | 102 |
| Msa0162230 | MtrunA17_Chr7g0269301 | 33.929 | 168 | 98 | 3 | 21 | 187 | 7 | 162 | 1.92e-23 | 91.3 |
| Msa0162230 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 121 | 181 | 5 | 65 | 6.13e-19 | 77.0 |
| Msa0162230 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 23 | 181 | 6 | 157 | 9.37e-19 | 79.0 |
| Msa0162230 | MtrunA17_Chr2g0294421 | 31.138 | 167 | 104 | 3 | 23 | 187 | 6 | 163 | 1.51e-18 | 78.6 |
| Msa0162230 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 24 | 190 | 7 | 166 | 7.07e-18 | 77.0 |
| Msa0162230 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 23 | 187 | 26 | 187 | 2.24e-17 | 77.0 |
| Msa0162230 | MtrunA17_Chr6g0450171 | 31.959 | 97 | 66 | 0 | 85 | 181 | 66 | 162 | 2.23e-16 | 73.2 |
| Msa0162230 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 26 | 181 | 9 | 157 | 2.17e-14 | 67.8 |
| Msa0162230 | MtrunA17_Chr7g0240701 | 28.485 | 165 | 99 | 3 | 23 | 181 | 6 | 157 | 1.05e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162230 | AT3G11930.1 | 56.886 | 167 | 70 | 2 | 23 | 188 | 34 | 199 | 6.52e-69 | 209 |
| Msa0162230 | AT3G11930.2 | 57.143 | 168 | 69 | 3 | 23 | 188 | 34 | 200 | 7.87e-68 | 206 |
| Msa0162230 | AT3G11930.4 | 56.805 | 169 | 69 | 3 | 23 | 188 | 34 | 201 | 1.03e-67 | 206 |
| Msa0162230 | AT3G11930.3 | 49.485 | 194 | 69 | 4 | 23 | 188 | 34 | 226 | 3.38e-61 | 190 |
| Msa0162230 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 24 | 185 | 32 | 192 | 4.24e-59 | 184 |
| Msa0162230 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 24 | 185 | 32 | 185 | 2.99e-55 | 174 |
| Msa0162230 | AT1G09740.2 | 39.024 | 164 | 93 | 2 | 24 | 185 | 10 | 168 | 3.49e-31 | 111 |
| Msa0162230 | AT1G09740.1 | 39.024 | 164 | 93 | 2 | 24 | 185 | 10 | 168 | 3.49e-31 | 111 |
| Msa0162230 | AT3G62550.1 | 34.731 | 167 | 95 | 4 | 17 | 181 | 2 | 156 | 3.49e-26 | 98.6 |
| Msa0162230 | AT2G47710.1 | 33.333 | 165 | 97 | 3 | 21 | 184 | 7 | 159 | 4.37e-26 | 98.6 |
| Msa0162230 | AT1G68300.1 | 34.320 | 169 | 96 | 4 | 15 | 181 | 2 | 157 | 6.13e-25 | 95.5 |
| Msa0162230 | AT3G17020.1 | 31.677 | 161 | 100 | 2 | 23 | 181 | 8 | 160 | 2.17e-17 | 75.9 |
| Msa0162230 | AT3G01520.1 | 25.595 | 168 | 104 | 3 | 23 | 181 | 7 | 162 | 3.90e-17 | 75.5 |
| Msa0162230 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 24 | 181 | 7 | 157 | 7.50e-17 | 74.3 |
| Msa0162230 | AT5G14680.1 | 38.667 | 75 | 46 | 0 | 107 | 181 | 88 | 162 | 5.54e-16 | 72.4 |
| Msa0162230 | AT1G11360.2 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162230 | AT1G11360.1 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162230 | AT1G11360.4 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162230 | AT1G11360.3 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162230 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 26 | 184 | 9 | 160 | 1.30e-12 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTATGTGCACCCTAT+TGG | 0.235333 | 1_4:-38722634 | Msa0162230:CDS |
| GTGCACATAATTGTGGAAAA+TGG | 0.245181 | 1_4:+38722642 | None:intergenic |
| CCAGCACCACCTGGTCCAAT+AGG | 0.340944 | 1_4:+38722619 | None:intergenic |
| ATTTGGTGCAGAGCATTTCT+TGG | 0.356343 | 1_4:-38720070 | Msa0162230:intron |
| GAAGGGGTGATGGAAGAAAT+AGG | 0.364787 | 1_4:-38722859 | None:intergenic |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_4:-38721003 | Msa0162230:CDS |
| CCTATTGGACCAGGTGGTGC+TGG | 0.410297 | 1_4:-38722619 | Msa0162230:intron |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_4:-38721018 | Msa0162230:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1_4:-38722320 | Msa0162230:CDS |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_4:+38721053 | None:intergenic |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_4:-38721002 | Msa0162230:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_4:-38721054 | Msa0162230:CDS |
| TGCACATAATTGTGGAAAAT+GGG | 0.455217 | 1_4:+38722643 | None:intergenic |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_4:+38722281 | None:intergenic |
| ATAGGTAGAGCTATTGATGA+GGG | 0.460884 | 1_4:-38722841 | Msa0162230:CDS |
| TAGAGCTATTGATGAGGGGA+GGG | 0.474715 | 1_4:-38722836 | Msa0162230:CDS |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_4:-38721080 | Msa0162230:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1_4:+38722316 | None:intergenic |
| GGGAAGGTGCAGAAGAGAGA+AGG | 0.493160 | 1_4:-38722816 | Msa0162230:CDS |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_4:-38722692 | Msa0162230:CDS |
| GAAGCTTCTATGCTCTTAAG+TGG | 0.498753 | 1_4:-38722753 | Msa0162230:CDS |
| GTGGCCTGGGCACACTCAAA+AGG | 0.501846 | 1_4:-38720989 | Msa0162230:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_4:-38722242 | Msa0162230:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_4:+38720010 | None:intergenic |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_4:+38721054 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_4:+38722699 | None:intergenic |
| AGAGAGAAGGATGAAGATGA+AGG | 0.511016 | 1_4:-38722803 | Msa0162230:CDS |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_4:-38722269 | Msa0162230:CDS |
| CAGCACCACCTGGTCCAATA+GGG | 0.517598 | 1_4:+38722620 | None:intergenic |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_4:+38722728 | None:intergenic |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_4:-38722686 | Msa0162230:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_4:-38722270 | Msa0162230:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_4:-38722716 | Msa0162230:CDS |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_4:-38721008 | Msa0162230:CDS |
| CAATAGGGTGCACATAATTG+TGG | 0.554577 | 1_4:+38722635 | None:intergenic |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_4:-38722251 | Msa0162230:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_4:-38721017 | Msa0162230:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_4:-38722712 | Msa0162230:CDS |
| GTAGAGCTATTGATGAGGGG+AGG | 0.576366 | 1_4:-38722837 | Msa0162230:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_4:-38722691 | Msa0162230:CDS |
| GCTATTGATGAGGGGAGGGA+AGG | 0.597723 | 1_4:-38722832 | Msa0162230:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_4:+38722729 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_4:-38722794 | Msa0162230:CDS |
| AATAGGTAGAGCTATTGATG+AGG | 0.611252 | 1_4:-38722842 | Msa0162230:CDS |
| TAGGTAGAGCTATTGATGAG+GGG | 0.618309 | 1_4:-38722840 | Msa0162230:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_4:-38721070 | Msa0162230:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1_4:-38722304 | Msa0162230:CDS |
| AGATACGAACCAGCACCACC+TGG | 0.633023 | 1_4:+38722610 | None:intergenic |
| TATGTGCACCCTATTGGACC+AGG | 0.634058 | 1_4:-38722628 | Msa0162230:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_4:-38722797 | Msa0162230:CDS |
| AAGCTTCTATGCTCTTAAGT+GGG | 0.645712 | 1_4:-38722752 | Msa0162230:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_4:-38722775 | Msa0162230:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_4:-38721069 | Msa0162230:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_4:-38720005 | Msa0162230:CDS |
| GTGCACCCTATTGGACCAGG+TGG | 0.681996 | 1_4:-38722625 | Msa0162230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTGAAATAAAATTAAA+TGG | - | chr1_4:38720731-38720750 | Msa0162230:intron | 10.0% |
| !! | TATTTAATTGTTAAGTTATA+GGG | + | chr1_4:38721186-38721205 | None:intergenic | 10.0% |
| !! | ATATTTAATTGTTAAGTTAT+AGG | + | chr1_4:38721187-38721206 | None:intergenic | 10.0% |
| !! | AATAAAAAAGCAAAAAAATT+TGG | - | chr1_4:38721519-38721538 | Msa0162230:intron | 10.0% |
| !! | ATAAAAAAGCAAAAAAATTT+GGG | - | chr1_4:38721520-38721539 | Msa0162230:intron | 10.0% |
| !! | AATTGATAAAAATTAAAAGA+TGG | + | chr1_4:38721610-38721629 | None:intergenic | 10.0% |
| !! | TAAACAAAATATAGAAAATA+TGG | + | chr1_4:38721901-38721920 | None:intergenic | 10.0% |
| !!! | ATATTTTCTATATTTTGTTT+AGG | - | chr1_4:38721900-38721919 | Msa0162230:intron | 10.0% |
| !!! | TATTTTCTATATTTTGTTTA+GGG | - | chr1_4:38721901-38721920 | Msa0162230:intron | 10.0% |
| !!! | AAAAAGTTGATATATTTATA+AGG | + | chr1_4:38721944-38721963 | None:intergenic | 10.0% |
| !!! | ATTAAAATAGAAAATTTTTG+AGG | + | chr1_4:38722005-38722024 | None:intergenic | 10.0% |
| !!! | TAAAATTTTTAGATTTTTTG+AGG | - | chr1_4:38722153-38722172 | Msa0162230:intron | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | - | chr1_4:38722204-38722223 | Msa0162230:intron | 10.0% |
| !! | GATAATTTGATATATTTATT+GGG | - | chr1_4:38722340-38722359 | Msa0162230:intron | 10.0% |
| !! | TTTAGTTAAATTAAAAAGAA+AGG | + | chr1_4:38722382-38722401 | None:intergenic | 10.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1_4:38720831-38720850 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1_4:38721227-38721246 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_4:38721431-38721450 | Msa0162230:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_4:38721432-38721451 | Msa0162230:intron | 15.0% |
| !! | AGTTGAAGAAATTTATTATA+AGG | + | chr1_4:38721976-38721995 | None:intergenic | 15.0% |
| !! | GGATAATTTGATATATTTAT+TGG | - | chr1_4:38722339-38722358 | Msa0162230:intron | 15.0% |
| !!! | AAATGACACTTATTTTAAAA+CGG | + | chr1_4:38722451-38722470 | None:intergenic | 15.0% |
| !! | TGTACATAGTAATAATTTAA+GGG | + | chr1_4:38722551-38722570 | None:intergenic | 15.0% |
| !!! | TATTAATTTTGGTTTCATTT+TGG | - | chr1_4:38722719-38722738 | Msa0162230:CDS | 15.0% |
| !!! | ATTACCCTTTTTTTTATATT+TGG | - | chr1_4:38722748-38722767 | Msa0162230:CDS | 15.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_4:38720269-38720288 | None:intergenic | 20.0% |
| !! | AAATATCAAAATTGCTTAGT+CGG | + | chr1_4:38720357-38720376 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTATTTGAGTAG+AGG | + | chr1_4:38720643-38720662 | None:intergenic | 20.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1_4:38720832-38720851 | None:intergenic | 20.0% |
| !! | CTCAAATTTCTCTTATAAAT+TGG | + | chr1_4:38721045-38721064 | None:intergenic | 20.0% |
| !! | CCTATTTATAAGAAAAAGTT+TGG | + | chr1_4:38721127-38721146 | None:intergenic | 20.0% |
| !!! | CCAAACTTTTTCTTATAAAT+AGG | - | chr1_4:38721124-38721143 | Msa0162230:intron | 20.0% |
| !!! | TTCAATTTTGGAAAACTTAA+TGG | + | chr1_4:38721276-38721295 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_4:38721433-38721452 | Msa0162230:intron | 20.0% |
| !!! | TGTCGAAATCAATTTTATTT+GGG | - | chr1_4:38721638-38721657 | Msa0162230:intron | 20.0% |
| !! | TACATATGAGTTTACTTAAA+AGG | + | chr1_4:38722038-38722057 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAAGGGACTTAA+AGG | - | chr1_4:38722318-38722337 | Msa0162230:CDS | 20.0% |
| !! | GTGTACATAGTAATAATTTA+AGG | + | chr1_4:38722552-38722571 | None:intergenic | 20.0% |
| !!! | AAAATAGCTTTGTTACATAT+TGG | + | chr1_4:38722607-38722626 | None:intergenic | 20.0% |
| !! | ATTGCGTTTCTTAATATATA+TGG | - | chr1_4:38722656-38722675 | Msa0162230:CDS | 20.0% |
| !! | TTGCGTTTCTTAATATATAT+GGG | - | chr1_4:38722657-38722676 | Msa0162230:CDS | 20.0% |
| !!! | AAACAACGTTCATTTTAAAA+CGG | - | chr1_4:38722690-38722709 | Msa0162230:CDS | 20.0% |
| !! | TGCACCAAATATAAAAAAAA+GGG | + | chr1_4:38722755-38722774 | None:intergenic | 20.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_4:38720109-38720128 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_4:38720110-38720129 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_4:38720261-38720280 | None:intergenic | 25.0% |
| ! | GTTGAAGTGATAAAATATTG+AGG | + | chr1_4:38720489-38720508 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAT+AGG | - | chr1_4:38720777-38720796 | Msa0162230:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCATA+GGG | - | chr1_4:38720778-38720797 | Msa0162230:intron | 25.0% |
| !!! | TTTATCATAGGGTTTTGTTA+AGG | - | chr1_4:38720789-38720808 | Msa0162230:intron | 25.0% |
| ! | GGTGTAATTGAAGAAAATAA+GGG | + | chr1_4:38720944-38720963 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATTGGAC+CGG | + | chr1_4:38721040-38721059 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr1_4:38721065-38721084 | Msa0162230:CDS | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | - | chr1_4:38721129-38721148 | Msa0162230:intron | 25.0% |
| ! | TTTGGAAAACTTAATGGAAT+GGG | + | chr1_4:38721270-38721289 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAACTTAATGGAA+TGG | + | chr1_4:38721271-38721290 | None:intergenic | 25.0% |
| !! | TGGTCAAATGTTTTCAATTT+TGG | + | chr1_4:38721288-38721307 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1_4:38721356-38721375 | None:intergenic | 25.0% |
| !! | GTGTCGAAATCAATTTTATT+TGG | - | chr1_4:38721637-38721656 | Msa0162230:intron | 25.0% |
| !!! | GTCGAAATCAATTTTATTTG+GGG | - | chr1_4:38721639-38721658 | Msa0162230:intron | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr1_4:38722277-38722296 | Msa0162230:CDS | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr1_4:38722278-38722297 | Msa0162230:CDS | 25.0% |
| !! | TGGTGACTGAAAATTTTAAA+GGG | - | chr1_4:38722309-38722328 | Msa0162230:CDS | 25.0% |
| !! | AAATGAAGTACTAACAAACT+TGG | - | chr1_4:38722417-38722436 | Msa0162230:intron | 25.0% |
| !!! | TAAGGGTACTATTAGAAAAA+TGG | + | chr1_4:38722534-38722553 | None:intergenic | 25.0% |
| ! | CTGCACCAAATATAAAAAAA+AGG | + | chr1_4:38722756-38722775 | None:intergenic | 25.0% |
| TGCACATAATTGTGGAAAAT+GGG | + | chr1_4:38720195-38720214 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_4:38720745-38720764 | Msa0162230:intron | 30.0% | |
| AGAAAATAAGGGAATAGCTT+TGG | + | chr1_4:38720933-38720952 | None:intergenic | 30.0% | |
| GGGTGTAATTGAAGAAAATA+AGG | + | chr1_4:38720945-38720964 | None:intergenic | 30.0% | |
| !!! | ATTACACCCTTTGTTTTTCT+TGG | - | chr1_4:38720956-38720975 | Msa0162230:intron | 30.0% |
| CTTTGACCAAGAAAAACAAA+GGG | + | chr1_4:38720965-38720984 | None:intergenic | 30.0% | |
| TAGATCAATTACCCATTATC+TGG | + | chr1_4:38720988-38721007 | None:intergenic | 30.0% | |
| AATGGGTAATTGATCTACAA+AGG | - | chr1_4:38720991-38721010 | Msa0162230:CDS | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1_4:38720992-38721011 | Msa0162230:CDS | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+CGG | + | chr1_4:38721104-38721123 | None:intergenic | 30.0% |
| !!! | GATATTTTCAATGGCTTGTT+GGG | + | chr1_4:38721218-38721237 | None:intergenic | 30.0% |
| !! | TGATATTTTCAATGGCTTGT+TGG | + | chr1_4:38721219-38721238 | None:intergenic | 30.0% |
| !! | GGTATGATTTGTGTGTTTTA+GGG | + | chr1_4:38721335-38721354 | None:intergenic | 30.0% |
| !! | AGGTATGATTTGTGTGTTTT+AGG | + | chr1_4:38721336-38721355 | None:intergenic | 30.0% |
| GGGATGAATCAATTTAGAAA+AGG | + | chr1_4:38721379-38721398 | None:intergenic | 30.0% | |
| TAGGTGTTCATTTCTTAAGT+GGG | + | chr1_4:38721399-38721418 | None:intergenic | 30.0% | |
| TTAGGTGTTCATTTCTTAAG+TGG | + | chr1_4:38721400-38721419 | None:intergenic | 30.0% | |
| ACTTAAGAAATGAACACCTA+AGG | - | chr1_4:38721399-38721418 | Msa0162230:intron | 30.0% | |
| ! | TTAAGAAGAGAGTATATACG+TGG | + | chr1_4:38721678-38721697 | None:intergenic | 30.0% |
| ATGATTTATCTAGCCAAATC+TGG | - | chr1_4:38721699-38721718 | Msa0162230:intron | 30.0% | |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1_4:38721715-38721734 | None:intergenic | 30.0% |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1_4:38721718-38721737 | Msa0162230:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1_4:38721727-38721746 | Msa0162230:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_4:38721818-38721837 | Msa0162230:intron | 30.0% |
| TTAAAAATAGGGACCAAAAG+TGG | - | chr1_4:38722289-38722308 | Msa0162230:CDS | 30.0% | |
| ! | AAATTTTCAGTCACCACTTT+TGG | + | chr1_4:38722305-38722324 | None:intergenic | 30.0% |
| ! | GTGGTGACTGAAAATTTTAA+AGG | - | chr1_4:38722308-38722327 | Msa0162230:CDS | 30.0% |
| !!! | GACACTTATTTTAAAACGGA+TGG | + | chr1_4:38722447-38722466 | None:intergenic | 30.0% |
| !!! | AACGTTCATTTTAAAACGGA+AGG | - | chr1_4:38722694-38722713 | Msa0162230:CDS | 30.0% |
| !!! | AACGGAAGGAGTATTAATTT+TGG | - | chr1_4:38722708-38722727 | Msa0162230:CDS | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_4:38722725-38722744 | Msa0162230:CDS | 30.0% |
| AATAGGTAGAGCTATTGATG+AGG | - | chr1_4:38719993-38720012 | Msa0162230:CDS | 35.0% | |
| ATAGGTAGAGCTATTGATGA+GGG | - | chr1_4:38719994-38720013 | Msa0162230:CDS | 35.0% | |
| AAGCTTCTATGCTCTTAAGT+GGG | - | chr1_4:38720083-38720102 | Msa0162230:intron | 35.0% | |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_4:38720143-38720162 | Msa0162230:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_4:38720144-38720163 | Msa0162230:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_4:38720149-38720168 | Msa0162230:intron | 35.0% | |
| GTGCACATAATTGTGGAAAA+TGG | + | chr1_4:38720196-38720215 | None:intergenic | 35.0% | |
| GTGGCTTAAGAAATTGAGTT+TGG | - | chr1_4:38720764-38720783 | Msa0162230:intron | 35.0% | |
| GCTTTGACCAAGAAAAACAA+AGG | + | chr1_4:38720966-38720985 | None:intergenic | 35.0% | |
| ATCTGGTTAAAAGTTCAGTC+CGG | - | chr1_4:38721082-38721101 | Msa0162230:CDS | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr1_4:38721132-38721151 | Msa0162230:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr1_4:38721133-38721152 | Msa0162230:intron | 35.0% | |
| GAAAACTTAATGGAATGGGT+GGG | + | chr1_4:38721266-38721285 | None:intergenic | 35.0% | |
| !!! | ACCAGTTTTCTAGTTGCATT+AGG | - | chr1_4:38721304-38721323 | Msa0162230:intron | 35.0% |
| ACCTAATGCAACTAGAAAAC+TGG | + | chr1_4:38721308-38721327 | None:intergenic | 35.0% | |
| !!! | TGATTTGTGTGTTTTAGGGA+GGG | + | chr1_4:38721331-38721350 | None:intergenic | 35.0% |
| !!! | ATGATTTGTGTGTTTTAGGG+AGG | + | chr1_4:38721332-38721351 | None:intergenic | 35.0% |
| TCTCATATATGTCTTGCCTT+AGG | + | chr1_4:38721418-38721437 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_4:38721755-38721774 | Msa0162230:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_4:38721817-38721836 | Msa0162230:intron | 35.0% |
| TAGGTAGAGCTATTGATGAG+GGG | - | chr1_4:38719995-38720014 | Msa0162230:CDS | 40.0% | |
| AGAGAGAAGGATGAAGATGA+AGG | - | chr1_4:38720032-38720051 | Msa0162230:CDS | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_4:38720038-38720057 | Msa0162230:CDS | 40.0% | |
| GAAGCTTCTATGCTCTTAAG+TGG | - | chr1_4:38720082-38720101 | Msa0162230:intron | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_4:38720119-38720138 | Msa0162230:intron | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_4:38720123-38720142 | Msa0162230:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_4:38720139-38720158 | None:intergenic | 40.0% | |
| CAATAGGGTGCACATAATTG+TGG | + | chr1_4:38720203-38720222 | None:intergenic | 40.0% | |
| CACAATTATGTGCACCCTAT+TGG | - | chr1_4:38720201-38720220 | Msa0162230:intron | 40.0% | |
| ! | GTGCGTTGAATTGAGACTTT+TGG | - | chr1_4:38720379-38720398 | Msa0162230:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_4:38720509-38720528 | Msa0162230:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_4:38720531-38720550 | Msa0162230:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_4:38720557-38720576 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_4:38720565-38720584 | Msa0162230:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_4:38720566-38720585 | Msa0162230:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_4:38720629-38720648 | None:intergenic | 40.0% | |
| TCTTGGTCAAAGCCAGATAA+TGG | - | chr1_4:38720973-38720992 | Msa0162230:intron | 40.0% | |
| CTTGGTCAAAGCCAGATAAT+GGG | - | chr1_4:38720974-38720993 | Msa0162230:intron | 40.0% | |
| AATTTCTGACCTACTACCTC+CGG | - | chr1_4:38721018-38721037 | Msa0162230:CDS | 40.0% | |
| TCTCTTATAAATTGGACCGG+AGG | + | chr1_4:38721037-38721056 | None:intergenic | 40.0% | |
| CAACTATCTAATACTCCCTC+CGG | + | chr1_4:38721151-38721170 | None:intergenic | 40.0% | |
| !! | TCAATGGCTTGTTGGGATTA+GGG | + | chr1_4:38721211-38721230 | None:intergenic | 40.0% |
| !! | TTCAATGGCTTGTTGGGATT+AGG | + | chr1_4:38721212-38721231 | None:intergenic | 40.0% |
| GGAAAACTTAATGGAATGGG+TGG | + | chr1_4:38721267-38721286 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_4:38721765-38721784 | Msa0162230:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_4:38721766-38721785 | Msa0162230:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_4:38721784-38721803 | None:intergenic | 40.0% | |
| !! | ATTTGGTGCAGAGCATTTCT+TGG | - | chr1_4:38722765-38722784 | Msa0162230:CDS | 40.0% |
| TAGAGCTATTGATGAGGGGA+GGG | - | chr1_4:38719999-38720018 | Msa0162230:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_4:38720041-38720060 | Msa0162230:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_4:38720060-38720079 | Msa0162230:CDS | 45.0% | |
| TTAGTCGGACAATGTGATCC+GGG | + | chr1_4:38720342-38720361 | None:intergenic | 45.0% | |
| CTTAGTCGGACAATGTGATC+CGG | + | chr1_4:38720343-38720362 | None:intergenic | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_4:38720515-38720534 | Msa0162230:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_4:38720593-38720612 | Msa0162230:intron | 45.0% | |
| TAAATTGGACCGGAGGTAGT+AGG | + | chr1_4:38721030-38721049 | None:intergenic | 45.0% | |
| !! | GGTGGGTGTGATTTTGGAAA+GGG | + | chr1_4:38721249-38721268 | None:intergenic | 45.0% |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_4:38721781-38721800 | Msa0162230:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_4:38721785-38721804 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_4:38722828-38722847 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_4:38722846-38722865 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_4:38722849-38722868 | None:intergenic | 45.0% |
| !!! | AAGAATAAAAATTTTAAATT+CGG | + | chr1_4:38720853-38720872 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTATTTTT+GGG | + | chr1_4:38722119-38722138 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTATTTT+TGG | + | chr1_4:38722120-38722139 | None:intergenic | 5.0% |
| GTAGAGCTATTGATGAGGGG+AGG | - | chr1_4:38719998-38720017 | Msa0162230:CDS | 50.0% | |
| TATGTGCACCCTATTGGACC+AGG | - | chr1_4:38720207-38720226 | Msa0162230:intron | 50.0% | |
| ATGACCACGACGCACATAAG+TGG | - | chr1_4:38720299-38720318 | Msa0162230:intron | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_4:38720522-38720541 | None:intergenic | 50.0% | |
| !! | GGGTGGGTGTGATTTTGGAA+AGG | + | chr1_4:38721250-38721269 | None:intergenic | 50.0% |
| ! | GGAATGGGTGGGTGTGATTT+TGG | + | chr1_4:38721255-38721274 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_4:38721827-38721846 | Msa0162230:intron | 50.0% | |
| !! | CTAACCTTTTGAGTGTGCCC+AGG | + | chr1_4:38721853-38721872 | None:intergenic | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_4:38722830-38722849 | Msa0162230:CDS | 50.0% | |
| GCTATTGATGAGGGGAGGGA+AGG | - | chr1_4:38720003-38720022 | Msa0162230:CDS | 55.0% | |
| ! | GGGAAGGTGCAGAAGAGAGA+AGG | - | chr1_4:38720019-38720038 | Msa0162230:CDS | 55.0% |
| CAGCACCACCTGGTCCAATA+GGG | + | chr1_4:38720218-38720237 | None:intergenic | 55.0% | |
| AGATACGAACCAGCACCACC+TGG | + | chr1_4:38720228-38720247 | None:intergenic | 55.0% | |
| ACCACGACGCACATAAGTGG+CGG | - | chr1_4:38720302-38720321 | Msa0162230:intron | 55.0% | |
| ! | GCACATAAGTGGCGGAGTCA+GGG | - | chr1_4:38720310-38720329 | Msa0162230:intron | 55.0% |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_4:38720584-38720603 | Msa0162230:intron | 55.0% | |
| !! | TTTTGAGTGTGCCCAGGCCA+CGG | + | chr1_4:38721847-38721866 | None:intergenic | 55.0% |
| GTGCACCCTATTGGACCAGG+TGG | - | chr1_4:38720210-38720229 | Msa0162230:intron | 60.0% | |
| CCAGCACCACCTGGTCCAAT+AGG | + | chr1_4:38720219-38720238 | None:intergenic | 60.0% | |
| CCTATTGGACCAGGTGGTGC+TGG | - | chr1_4:38720216-38720235 | Msa0162230:intron | 60.0% | |
| TCCGCCACTTATGTGCGTCG+TGG | + | chr1_4:38720306-38720325 | None:intergenic | 60.0% | |
| ! | CGCACATAAGTGGCGGAGTC+AGG | - | chr1_4:38720309-38720328 | Msa0162230:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_4:38721832-38721851 | Msa0162230:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_4:38721833-38721852 | Msa0162230:intron | 60.0% | |
| GTGGCCTGGGCACACTCAAA+AGG | - | chr1_4:38721846-38721865 | Msa0162230:intron | 60.0% | |
| ! | GCGGAGTCAGGGTTCTGACC+CGG | - | chr1_4:38720321-38720340 | Msa0162230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38719985 | 38722872 | 38719985 | ID=Msa0162230;Name=Msa0162230 |
| chr1_4 | mRNA | 38719985 | 38722872 | 38719985 | ID=Msa0162230-mRNA-1;Parent=Msa0162230;Name=Msa0162230-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|190 |
| chr1_4 | exon | 38722620 | 38722872 | 38722620 | ID=Msa0162230-mRNA-1:exon:11318;Parent=Msa0162230-mRNA-1 |
| chr1_4 | exon | 38722243 | 38722346 | 38722243 | ID=Msa0162230-mRNA-1:exon:11317;Parent=Msa0162230-mRNA-1 |
| chr1_4 | exon | 38720990 | 38721108 | 38720990 | ID=Msa0162230-mRNA-1:exon:11316;Parent=Msa0162230-mRNA-1 |
| chr1_4 | exon | 38719985 | 38720081 | 38719985 | ID=Msa0162230-mRNA-1:exon:11315;Parent=Msa0162230-mRNA-1 |
| chr1_4 | CDS | 38722620 | 38722872 | 38722620 | ID=Msa0162230-mRNA-1:cds;Parent=Msa0162230-mRNA-1 |
| chr1_4 | CDS | 38722243 | 38722346 | 38722243 | ID=Msa0162230-mRNA-1:cds;Parent=Msa0162230-mRNA-1 |
| chr1_4 | CDS | 38720990 | 38721108 | 38720990 | ID=Msa0162230-mRNA-1:cds;Parent=Msa0162230-mRNA-1 |
| chr1_4 | CDS | 38719985 | 38720081 | 38719985 | ID=Msa0162230-mRNA-1:cds;Parent=Msa0162230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
