Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162240 | XP_013467750.1 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 1.41e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162240 | sp|Q8LGG8|USPAL_ARATH | 25.595 | 168 | 104 | 3 | 23 | 181 | 7 | 162 | 3.83e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162240 | A0A072VJ06 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 6.72e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0162240 | 0.830619 | 2.652611e-55 | -8.615850e-47 |
| Msa0070880 | Msa0162240 | 0.847211 | 1.334915e-59 | -8.615850e-47 |
| Msa0118780 | Msa0162240 | 0.842472 | 2.532376e-58 | -8.615850e-47 |
| Msa0162100 | Msa0162240 | 0.874760 | 5.247840e-68 | -8.615850e-47 |
| Msa0162220 | Msa0162240 | 0.903852 | 2.259119e-79 | -8.615850e-47 |
| Msa0162230 | Msa0162240 | 0.999769 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162240 | MtrunA17_Chr1g0176311 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 1.29e-139 | 387 |
| Msa0162240 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 20 | 190 | 1 | 177 | 5.15e-99 | 283 |
| Msa0162240 | MtrunA17_Chr1g0192651 | 40.741 | 162 | 83 | 3 | 23 | 184 | 10 | 158 | 2.22e-34 | 119 |
| Msa0162240 | MtrunA17_Chr1g0195661 | 37.989 | 179 | 93 | 5 | 13 | 187 | 3 | 167 | 4.30e-32 | 113 |
| Msa0162240 | MtrunA17_Chr1g0194801 | 35.294 | 170 | 94 | 5 | 17 | 183 | 2 | 158 | 6.68e-31 | 110 |
| Msa0162240 | MtrunA17_Chr5g0427291 | 35.976 | 164 | 96 | 4 | 24 | 181 | 10 | 170 | 1.36e-27 | 102 |
| Msa0162240 | MtrunA17_Chr7g0269301 | 33.929 | 168 | 98 | 3 | 21 | 187 | 7 | 162 | 1.92e-23 | 91.3 |
| Msa0162240 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 121 | 181 | 5 | 65 | 6.13e-19 | 77.0 |
| Msa0162240 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 23 | 181 | 6 | 157 | 9.37e-19 | 79.0 |
| Msa0162240 | MtrunA17_Chr2g0294421 | 31.138 | 167 | 104 | 3 | 23 | 187 | 6 | 163 | 1.51e-18 | 78.6 |
| Msa0162240 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 24 | 190 | 7 | 166 | 7.07e-18 | 77.0 |
| Msa0162240 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 23 | 187 | 26 | 187 | 2.24e-17 | 77.0 |
| Msa0162240 | MtrunA17_Chr6g0450171 | 31.959 | 97 | 66 | 0 | 85 | 181 | 66 | 162 | 2.23e-16 | 73.2 |
| Msa0162240 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 26 | 181 | 9 | 157 | 2.17e-14 | 67.8 |
| Msa0162240 | MtrunA17_Chr7g0240701 | 28.485 | 165 | 99 | 3 | 23 | 181 | 6 | 157 | 1.05e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162240 | AT3G11930.1 | 56.886 | 167 | 70 | 2 | 23 | 188 | 34 | 199 | 6.52e-69 | 209 |
| Msa0162240 | AT3G11930.2 | 57.143 | 168 | 69 | 3 | 23 | 188 | 34 | 200 | 7.87e-68 | 206 |
| Msa0162240 | AT3G11930.4 | 56.805 | 169 | 69 | 3 | 23 | 188 | 34 | 201 | 1.03e-67 | 206 |
| Msa0162240 | AT3G11930.3 | 49.485 | 194 | 69 | 4 | 23 | 188 | 34 | 226 | 3.38e-61 | 190 |
| Msa0162240 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 24 | 185 | 32 | 192 | 4.24e-59 | 184 |
| Msa0162240 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 24 | 185 | 32 | 185 | 2.99e-55 | 174 |
| Msa0162240 | AT1G09740.2 | 39.024 | 164 | 93 | 2 | 24 | 185 | 10 | 168 | 3.49e-31 | 111 |
| Msa0162240 | AT1G09740.1 | 39.024 | 164 | 93 | 2 | 24 | 185 | 10 | 168 | 3.49e-31 | 111 |
| Msa0162240 | AT3G62550.1 | 34.731 | 167 | 95 | 4 | 17 | 181 | 2 | 156 | 3.49e-26 | 98.6 |
| Msa0162240 | AT2G47710.1 | 33.333 | 165 | 97 | 3 | 21 | 184 | 7 | 159 | 4.37e-26 | 98.6 |
| Msa0162240 | AT1G68300.1 | 34.320 | 169 | 96 | 4 | 15 | 181 | 2 | 157 | 6.13e-25 | 95.5 |
| Msa0162240 | AT3G17020.1 | 31.677 | 161 | 100 | 2 | 23 | 181 | 8 | 160 | 2.17e-17 | 75.9 |
| Msa0162240 | AT3G01520.1 | 25.595 | 168 | 104 | 3 | 23 | 181 | 7 | 162 | 3.90e-17 | 75.5 |
| Msa0162240 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 24 | 181 | 7 | 157 | 7.50e-17 | 74.3 |
| Msa0162240 | AT5G14680.1 | 38.667 | 75 | 46 | 0 | 107 | 181 | 88 | 162 | 5.54e-16 | 72.4 |
| Msa0162240 | AT1G11360.2 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162240 | AT1G11360.1 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162240 | AT1G11360.4 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162240 | AT1G11360.3 | 29.480 | 173 | 102 | 4 | 21 | 185 | 37 | 197 | 7.36e-14 | 68.2 |
| Msa0162240 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 26 | 184 | 9 | 160 | 1.30e-12 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTATGTGCACCCTAT+TGG | 0.235333 | 1_4:-38747968 | Msa0162240:CDS |
| GTGCACATAATTGTGGAAAA+TGG | 0.245181 | 1_4:+38747976 | None:intergenic |
| CCAGCACCACCTGGTCCAAT+AGG | 0.340944 | 1_4:+38747953 | None:intergenic |
| ATTTGGTGCAGAGCATTTCT+TGG | 0.356343 | 1_4:-38745405 | Msa0162240:intron |
| GAAGGGGTGATGGAAGAAAT+AGG | 0.364787 | 1_4:-38748193 | None:intergenic |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_4:-38746339 | Msa0162240:CDS |
| CCTATTGGACCAGGTGGTGC+TGG | 0.410297 | 1_4:-38747953 | Msa0162240:intron |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_4:-38746354 | Msa0162240:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1_4:-38747656 | Msa0162240:CDS |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_4:+38746389 | None:intergenic |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_4:-38746338 | Msa0162240:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_4:-38746390 | Msa0162240:CDS |
| TGCACATAATTGTGGAAAAT+GGG | 0.455217 | 1_4:+38747977 | None:intergenic |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_4:+38747617 | None:intergenic |
| ATAGGTAGAGCTATTGATGA+GGG | 0.460884 | 1_4:-38748175 | Msa0162240:CDS |
| TAGAGCTATTGATGAGGGGA+GGG | 0.474715 | 1_4:-38748170 | Msa0162240:CDS |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_4:-38746416 | Msa0162240:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1_4:+38747652 | None:intergenic |
| GGGAAGGTGCAGAAGAGAGA+AGG | 0.493160 | 1_4:-38748150 | Msa0162240:CDS |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_4:-38748026 | Msa0162240:CDS |
| GAAGCTTCTATGCTCTTAAG+TGG | 0.498753 | 1_4:-38748087 | Msa0162240:CDS |
| GTGGCCTGGGCACACTCAAA+AGG | 0.501846 | 1_4:-38746325 | Msa0162240:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_4:-38747578 | Msa0162240:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_4:+38745345 | None:intergenic |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_4:+38746390 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_4:+38748033 | None:intergenic |
| AGAGAGAAGGATGAAGATGA+AGG | 0.511016 | 1_4:-38748137 | Msa0162240:CDS |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_4:-38747605 | Msa0162240:CDS |
| CAGCACCACCTGGTCCAATA+GGG | 0.517598 | 1_4:+38747954 | None:intergenic |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_4:+38748062 | None:intergenic |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_4:-38748020 | Msa0162240:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_4:-38747606 | Msa0162240:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_4:-38748050 | Msa0162240:CDS |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_4:-38746344 | Msa0162240:CDS |
| CAATAGGGTGCACATAATTG+TGG | 0.554577 | 1_4:+38747969 | None:intergenic |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_4:-38747587 | Msa0162240:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_4:-38746353 | Msa0162240:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_4:-38748046 | Msa0162240:CDS |
| GTAGAGCTATTGATGAGGGG+AGG | 0.576366 | 1_4:-38748171 | Msa0162240:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_4:-38748025 | Msa0162240:CDS |
| GCTATTGATGAGGGGAGGGA+AGG | 0.597723 | 1_4:-38748166 | Msa0162240:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_4:+38748063 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_4:-38748128 | Msa0162240:CDS |
| AATAGGTAGAGCTATTGATG+AGG | 0.611252 | 1_4:-38748176 | Msa0162240:CDS |
| TAGGTAGAGCTATTGATGAG+GGG | 0.618309 | 1_4:-38748174 | Msa0162240:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_4:-38746406 | Msa0162240:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1_4:-38747640 | Msa0162240:CDS |
| AGATACGAACCAGCACCACC+TGG | 0.633023 | 1_4:+38747944 | None:intergenic |
| TATGTGCACCCTATTGGACC+AGG | 0.634058 | 1_4:-38747962 | Msa0162240:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_4:-38748131 | Msa0162240:CDS |
| AAGCTTCTATGCTCTTAAGT+GGG | 0.645712 | 1_4:-38748086 | Msa0162240:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_4:-38748109 | Msa0162240:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_4:-38746405 | Msa0162240:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_4:-38745340 | Msa0162240:CDS |
| GTGCACCCTATTGGACCAGG+TGG | 0.681996 | 1_4:-38747959 | Msa0162240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTGAAATAAAATTAAA+TGG | - | chr1_4:38746064-38746083 | Msa0162240:intron | 10.0% |
| !! | TATTTAATTGTTAAGTTATA+GGG | + | chr1_4:38746519-38746538 | None:intergenic | 10.0% |
| !! | ATATTTAATTGTTAAGTTAT+AGG | + | chr1_4:38746520-38746539 | None:intergenic | 10.0% |
| !! | AATAAAAAAGCAAAAAAATT+TGG | - | chr1_4:38746852-38746871 | Msa0162240:intron | 10.0% |
| !! | ATAAAAAAGCAAAAAAATTT+GGG | - | chr1_4:38746853-38746872 | Msa0162240:intron | 10.0% |
| !! | AATTGATAAAAATTAAAAGA+TGG | + | chr1_4:38746943-38746962 | None:intergenic | 10.0% |
| !! | TAAACAAAATATAGAAAATA+TGG | + | chr1_4:38747234-38747253 | None:intergenic | 10.0% |
| !!! | ATATTTTCTATATTTTGTTT+AGG | - | chr1_4:38747233-38747252 | Msa0162240:intron | 10.0% |
| !!! | TATTTTCTATATTTTGTTTA+GGG | - | chr1_4:38747234-38747253 | Msa0162240:intron | 10.0% |
| !!! | AAAAAGTTGATATATTTATA+AGG | + | chr1_4:38747277-38747296 | None:intergenic | 10.0% |
| !!! | ATTAAAATAGAAAATTTTTG+AGG | + | chr1_4:38747338-38747357 | None:intergenic | 10.0% |
| !!! | TAAAATTTTTAGATTTTTTG+AGG | - | chr1_4:38747486-38747505 | Msa0162240:intron | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | - | chr1_4:38747537-38747556 | Msa0162240:intron | 10.0% |
| !! | GATAATTTGATATATTTATT+GGG | - | chr1_4:38747673-38747692 | Msa0162240:intron | 10.0% |
| !! | TTTAGTTAAATTAAAAAGAA+AGG | + | chr1_4:38747715-38747734 | None:intergenic | 10.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1_4:38746164-38746183 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1_4:38746560-38746579 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_4:38746764-38746783 | Msa0162240:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_4:38746765-38746784 | Msa0162240:intron | 15.0% |
| !! | AGTTGAAGAAATTTATTATA+AGG | + | chr1_4:38747309-38747328 | None:intergenic | 15.0% |
| !! | GGATAATTTGATATATTTAT+TGG | - | chr1_4:38747672-38747691 | Msa0162240:intron | 15.0% |
| !!! | AAATGACACTTATTTTAAAA+CGG | + | chr1_4:38747784-38747803 | None:intergenic | 15.0% |
| !! | TGTACATAGTAATAATTTAA+GGG | + | chr1_4:38747884-38747903 | None:intergenic | 15.0% |
| !!! | TATTAATTTTGGTTTCATTT+TGG | - | chr1_4:38748052-38748071 | Msa0162240:CDS | 15.0% |
| !!! | TTACCCTTTTTTTTTATATT+TGG | - | chr1_4:38748082-38748101 | Msa0162240:CDS | 15.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_4:38745602-38745621 | None:intergenic | 20.0% |
| !! | AAATATCAAAATTGCTTAGT+CGG | + | chr1_4:38745690-38745709 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTATTTGAGTAG+AGG | + | chr1_4:38745976-38745995 | None:intergenic | 20.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1_4:38746165-38746184 | None:intergenic | 20.0% |
| !! | CTCAAATTTCTCTTATAAAT+TGG | + | chr1_4:38746378-38746397 | None:intergenic | 20.0% |
| !! | CCTATTTATAAGAAAAAGTT+TGG | + | chr1_4:38746460-38746479 | None:intergenic | 20.0% |
| !!! | CCAAACTTTTTCTTATAAAT+AGG | - | chr1_4:38746457-38746476 | Msa0162240:intron | 20.0% |
| !!! | TTCAATTTTGGAAAACTTAA+TGG | + | chr1_4:38746609-38746628 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_4:38746766-38746785 | Msa0162240:intron | 20.0% |
| !!! | TGTCGAAATCAATTTTATTT+GGG | - | chr1_4:38746971-38746990 | Msa0162240:intron | 20.0% |
| !! | TACATATGAGTTTACTTAAA+AGG | + | chr1_4:38747371-38747390 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAAGGGACTTAA+AGG | - | chr1_4:38747651-38747670 | Msa0162240:CDS | 20.0% |
| !! | GTGTACATAGTAATAATTTA+AGG | + | chr1_4:38747885-38747904 | None:intergenic | 20.0% |
| !!! | AAAATAGCTTTGTTACATAT+TGG | + | chr1_4:38747940-38747959 | None:intergenic | 20.0% |
| !! | ATTGCGTTTCTTAATATATA+TGG | - | chr1_4:38747989-38748008 | Msa0162240:CDS | 20.0% |
| !! | TTGCGTTTCTTAATATATAT+GGG | - | chr1_4:38747990-38748009 | Msa0162240:CDS | 20.0% |
| !!! | AAACAACGTTCATTTTAAAA+CGG | - | chr1_4:38748023-38748042 | Msa0162240:CDS | 20.0% |
| !! | GCACCAAATATAAAAAAAAA+GGG | + | chr1_4:38748088-38748107 | None:intergenic | 20.0% |
| !! | TGCACCAAATATAAAAAAAA+AGG | + | chr1_4:38748089-38748108 | None:intergenic | 20.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_4:38745444-38745463 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_4:38745445-38745464 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_4:38745594-38745613 | None:intergenic | 25.0% |
| ! | GTTGAAGTGATAAAATATTG+AGG | + | chr1_4:38745822-38745841 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAT+AGG | - | chr1_4:38746110-38746129 | Msa0162240:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCATA+GGG | - | chr1_4:38746111-38746130 | Msa0162240:intron | 25.0% |
| !!! | TTTATCATAGGGTTTTGTTA+AGG | - | chr1_4:38746122-38746141 | Msa0162240:intron | 25.0% |
| ! | GGTGTAATTGAAGAAAATAA+GGG | + | chr1_4:38746277-38746296 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATTGGAC+CGG | + | chr1_4:38746373-38746392 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr1_4:38746398-38746417 | Msa0162240:CDS | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | - | chr1_4:38746462-38746481 | Msa0162240:intron | 25.0% |
| ! | TTTGGAAAACTTAATGGAAT+GGG | + | chr1_4:38746603-38746622 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAACTTAATGGAA+TGG | + | chr1_4:38746604-38746623 | None:intergenic | 25.0% |
| !! | TGGTCAAATGTTTTCAATTT+TGG | + | chr1_4:38746621-38746640 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1_4:38746689-38746708 | None:intergenic | 25.0% |
| !! | GTGTCGAAATCAATTTTATT+TGG | - | chr1_4:38746970-38746989 | Msa0162240:intron | 25.0% |
| !!! | GTCGAAATCAATTTTATTTG+GGG | - | chr1_4:38746972-38746991 | Msa0162240:intron | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr1_4:38747610-38747629 | Msa0162240:CDS | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr1_4:38747611-38747630 | Msa0162240:CDS | 25.0% |
| !! | TGGTGACTGAAAATTTTAAA+GGG | - | chr1_4:38747642-38747661 | Msa0162240:CDS | 25.0% |
| !! | AAATGAAGTACTAACAAACT+TGG | - | chr1_4:38747750-38747769 | Msa0162240:intron | 25.0% |
| !!! | TAAGGGTACTATTAGAAAAA+TGG | + | chr1_4:38747867-38747886 | None:intergenic | 25.0% |
| TGCACATAATTGTGGAAAAT+GGG | + | chr1_4:38745530-38745549 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_4:38746078-38746097 | Msa0162240:intron | 30.0% | |
| AGAAAATAAGGGAATAGCTT+TGG | + | chr1_4:38746266-38746285 | None:intergenic | 30.0% | |
| GGGTGTAATTGAAGAAAATA+AGG | + | chr1_4:38746278-38746297 | None:intergenic | 30.0% | |
| !!! | ATTACACCCTTTGTTTTTCT+TGG | - | chr1_4:38746289-38746308 | Msa0162240:intron | 30.0% |
| CTTTGACCAAGAAAAACAAA+GGG | + | chr1_4:38746298-38746317 | None:intergenic | 30.0% | |
| TAGATCAATTACCCATTATC+TGG | + | chr1_4:38746321-38746340 | None:intergenic | 30.0% | |
| AATGGGTAATTGATCTACAA+AGG | - | chr1_4:38746324-38746343 | Msa0162240:intron | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1_4:38746325-38746344 | Msa0162240:intron | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+CGG | + | chr1_4:38746437-38746456 | None:intergenic | 30.0% |
| !!! | GATATTTTCAATGGCTTGTT+GGG | + | chr1_4:38746551-38746570 | None:intergenic | 30.0% |
| !! | TGATATTTTCAATGGCTTGT+TGG | + | chr1_4:38746552-38746571 | None:intergenic | 30.0% |
| !! | GGTATGATTTGTGTGTTTTA+GGG | + | chr1_4:38746668-38746687 | None:intergenic | 30.0% |
| !! | AGGTATGATTTGTGTGTTTT+AGG | + | chr1_4:38746669-38746688 | None:intergenic | 30.0% |
| GGGATGAATCAATTTAGAAA+AGG | + | chr1_4:38746712-38746731 | None:intergenic | 30.0% | |
| TAGGTGTTCATTTCTTAAGT+GGG | + | chr1_4:38746732-38746751 | None:intergenic | 30.0% | |
| TTAGGTGTTCATTTCTTAAG+TGG | + | chr1_4:38746733-38746752 | None:intergenic | 30.0% | |
| ACTTAAGAAATGAACACCTA+AGG | - | chr1_4:38746732-38746751 | Msa0162240:intron | 30.0% | |
| ! | TTAAGAAGAGAGTATATACG+TGG | + | chr1_4:38747011-38747030 | None:intergenic | 30.0% |
| ATGATTTATCTAGCCAAATC+TGG | - | chr1_4:38747032-38747051 | Msa0162240:intron | 30.0% | |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1_4:38747048-38747067 | None:intergenic | 30.0% |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1_4:38747051-38747070 | Msa0162240:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1_4:38747060-38747079 | Msa0162240:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_4:38747151-38747170 | Msa0162240:intron | 30.0% |
| TTAAAAATAGGGACCAAAAG+TGG | - | chr1_4:38747622-38747641 | Msa0162240:CDS | 30.0% | |
| ! | AAATTTTCAGTCACCACTTT+TGG | + | chr1_4:38747638-38747657 | None:intergenic | 30.0% |
| ! | GTGGTGACTGAAAATTTTAA+AGG | - | chr1_4:38747641-38747660 | Msa0162240:CDS | 30.0% |
| !!! | GACACTTATTTTAAAACGGA+TGG | + | chr1_4:38747780-38747799 | None:intergenic | 30.0% |
| !!! | AACGTTCATTTTAAAACGGA+AGG | - | chr1_4:38748027-38748046 | Msa0162240:CDS | 30.0% |
| !!! | AACGGAAGGAGTATTAATTT+TGG | - | chr1_4:38748041-38748060 | Msa0162240:CDS | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_4:38748058-38748077 | Msa0162240:CDS | 30.0% |
| AATAGGTAGAGCTATTGATG+AGG | - | chr1_4:38745328-38745347 | Msa0162240:CDS | 35.0% | |
| ATAGGTAGAGCTATTGATGA+GGG | - | chr1_4:38745329-38745348 | Msa0162240:CDS | 35.0% | |
| AAGCTTCTATGCTCTTAAGT+GGG | - | chr1_4:38745418-38745437 | Msa0162240:intron | 35.0% | |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_4:38745478-38745497 | Msa0162240:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_4:38745479-38745498 | Msa0162240:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_4:38745484-38745503 | Msa0162240:intron | 35.0% | |
| GTGCACATAATTGTGGAAAA+TGG | + | chr1_4:38745531-38745550 | None:intergenic | 35.0% | |
| GTGGCTTAAGAAATTGAGTT+TGG | - | chr1_4:38746097-38746116 | Msa0162240:intron | 35.0% | |
| GCTTTGACCAAGAAAAACAA+AGG | + | chr1_4:38746299-38746318 | None:intergenic | 35.0% | |
| ATCTGGTTAAAAGTTCAGTC+CGG | - | chr1_4:38746415-38746434 | Msa0162240:CDS | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr1_4:38746465-38746484 | Msa0162240:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr1_4:38746466-38746485 | Msa0162240:intron | 35.0% | |
| GAAAACTTAATGGAATGGGT+GGG | + | chr1_4:38746599-38746618 | None:intergenic | 35.0% | |
| !!! | ACCAGTTTTCTAGTTGCATT+AGG | - | chr1_4:38746637-38746656 | Msa0162240:intron | 35.0% |
| ACCTAATGCAACTAGAAAAC+TGG | + | chr1_4:38746641-38746660 | None:intergenic | 35.0% | |
| !!! | TGATTTGTGTGTTTTAGGGA+GGG | + | chr1_4:38746664-38746683 | None:intergenic | 35.0% |
| !!! | ATGATTTGTGTGTTTTAGGG+AGG | + | chr1_4:38746665-38746684 | None:intergenic | 35.0% |
| TCTCATATATGTCTTGCCTT+AGG | + | chr1_4:38746751-38746770 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_4:38747088-38747107 | Msa0162240:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_4:38747150-38747169 | Msa0162240:intron | 35.0% |
| TAGGTAGAGCTATTGATGAG+GGG | - | chr1_4:38745330-38745349 | Msa0162240:CDS | 40.0% | |
| AGAGAGAAGGATGAAGATGA+AGG | - | chr1_4:38745367-38745386 | Msa0162240:CDS | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_4:38745373-38745392 | Msa0162240:CDS | 40.0% | |
| GAAGCTTCTATGCTCTTAAG+TGG | - | chr1_4:38745417-38745436 | Msa0162240:intron | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_4:38745454-38745473 | Msa0162240:intron | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_4:38745458-38745477 | Msa0162240:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_4:38745474-38745493 | None:intergenic | 40.0% | |
| CAATAGGGTGCACATAATTG+TGG | + | chr1_4:38745538-38745557 | None:intergenic | 40.0% | |
| CACAATTATGTGCACCCTAT+TGG | - | chr1_4:38745536-38745555 | Msa0162240:intron | 40.0% | |
| ! | GTGCGTTGAATTGAGACTTT+TGG | - | chr1_4:38745712-38745731 | Msa0162240:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_4:38745842-38745861 | Msa0162240:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_4:38745864-38745883 | Msa0162240:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_4:38745890-38745909 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_4:38745898-38745917 | Msa0162240:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_4:38745899-38745918 | Msa0162240:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_4:38745962-38745981 | None:intergenic | 40.0% | |
| TCTTGGTCAAAGCCAGATAA+TGG | - | chr1_4:38746306-38746325 | Msa0162240:intron | 40.0% | |
| CTTGGTCAAAGCCAGATAAT+GGG | - | chr1_4:38746307-38746326 | Msa0162240:intron | 40.0% | |
| AATTTCTGACCTACTACCTC+CGG | - | chr1_4:38746351-38746370 | Msa0162240:CDS | 40.0% | |
| TCTCTTATAAATTGGACCGG+AGG | + | chr1_4:38746370-38746389 | None:intergenic | 40.0% | |
| CAACTATCTAATACTCCCTC+CGG | + | chr1_4:38746484-38746503 | None:intergenic | 40.0% | |
| !! | TCAATGGCTTGTTGGGATTA+GGG | + | chr1_4:38746544-38746563 | None:intergenic | 40.0% |
| !! | TTCAATGGCTTGTTGGGATT+AGG | + | chr1_4:38746545-38746564 | None:intergenic | 40.0% |
| GGAAAACTTAATGGAATGGG+TGG | + | chr1_4:38746600-38746619 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_4:38747098-38747117 | Msa0162240:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_4:38747099-38747118 | Msa0162240:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_4:38747117-38747136 | None:intergenic | 40.0% | |
| !! | ATTTGGTGCAGAGCATTTCT+TGG | - | chr1_4:38748099-38748118 | Msa0162240:CDS | 40.0% |
| TAGAGCTATTGATGAGGGGA+GGG | - | chr1_4:38745334-38745353 | Msa0162240:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_4:38745376-38745395 | Msa0162240:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_4:38745395-38745414 | Msa0162240:CDS | 45.0% | |
| TTAGTCGGACAATGTGATCC+GGG | + | chr1_4:38745675-38745694 | None:intergenic | 45.0% | |
| CTTAGTCGGACAATGTGATC+CGG | + | chr1_4:38745676-38745695 | None:intergenic | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_4:38745848-38745867 | Msa0162240:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_4:38745926-38745945 | Msa0162240:intron | 45.0% | |
| TAAATTGGACCGGAGGTAGT+AGG | + | chr1_4:38746363-38746382 | None:intergenic | 45.0% | |
| !! | GGTGGGTGTGATTTTGGAAA+GGG | + | chr1_4:38746582-38746601 | None:intergenic | 45.0% |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_4:38747114-38747133 | Msa0162240:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_4:38747118-38747137 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_4:38748162-38748181 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_4:38748180-38748199 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_4:38748183-38748202 | None:intergenic | 45.0% |
| !!! | AAGAATAAAAATTTTAAATT+CGG | + | chr1_4:38746186-38746205 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTATTTTT+GGG | + | chr1_4:38747452-38747471 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTATTTT+TGG | + | chr1_4:38747453-38747472 | None:intergenic | 5.0% |
| GTAGAGCTATTGATGAGGGG+AGG | - | chr1_4:38745333-38745352 | Msa0162240:CDS | 50.0% | |
| TATGTGCACCCTATTGGACC+AGG | - | chr1_4:38745542-38745561 | Msa0162240:intron | 50.0% | |
| ATGACCACGACGCACATAAG+TGG | - | chr1_4:38745632-38745651 | Msa0162240:intron | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_4:38745855-38745874 | None:intergenic | 50.0% | |
| !! | GGGTGGGTGTGATTTTGGAA+AGG | + | chr1_4:38746583-38746602 | None:intergenic | 50.0% |
| ! | GGAATGGGTGGGTGTGATTT+TGG | + | chr1_4:38746588-38746607 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_4:38747160-38747179 | Msa0162240:intron | 50.0% | |
| !! | CTAACCTTTTGAGTGTGCCC+AGG | + | chr1_4:38747186-38747205 | None:intergenic | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_4:38748164-38748183 | Msa0162240:CDS | 50.0% | |
| GCTATTGATGAGGGGAGGGA+AGG | - | chr1_4:38745338-38745357 | Msa0162240:CDS | 55.0% | |
| ! | GGGAAGGTGCAGAAGAGAGA+AGG | - | chr1_4:38745354-38745373 | Msa0162240:CDS | 55.0% |
| CAGCACCACCTGGTCCAATA+GGG | + | chr1_4:38745553-38745572 | None:intergenic | 55.0% | |
| AGATACGAACCAGCACCACC+TGG | + | chr1_4:38745563-38745582 | None:intergenic | 55.0% | |
| ACCACGACGCACATAAGTGG+CGG | - | chr1_4:38745635-38745654 | Msa0162240:intron | 55.0% | |
| ! | GCACATAAGTGGCGGAGTCA+GGG | - | chr1_4:38745643-38745662 | Msa0162240:intron | 55.0% |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_4:38745917-38745936 | Msa0162240:intron | 55.0% | |
| !! | TTTTGAGTGTGCCCAGGCCA+CGG | + | chr1_4:38747180-38747199 | None:intergenic | 55.0% |
| GTGCACCCTATTGGACCAGG+TGG | - | chr1_4:38745545-38745564 | Msa0162240:intron | 60.0% | |
| CCAGCACCACCTGGTCCAAT+AGG | + | chr1_4:38745554-38745573 | None:intergenic | 60.0% | |
| CCTATTGGACCAGGTGGTGC+TGG | - | chr1_4:38745551-38745570 | Msa0162240:intron | 60.0% | |
| TCCGCCACTTATGTGCGTCG+TGG | + | chr1_4:38745639-38745658 | None:intergenic | 60.0% | |
| ! | CGCACATAAGTGGCGGAGTC+AGG | - | chr1_4:38745642-38745661 | Msa0162240:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_4:38747165-38747184 | Msa0162240:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_4:38747166-38747185 | Msa0162240:intron | 60.0% | |
| GTGGCCTGGGCACACTCAAA+AGG | - | chr1_4:38747179-38747198 | Msa0162240:intron | 60.0% | |
| ! | GCGGAGTCAGGGTTCTGACC+CGG | - | chr1_4:38745654-38745673 | Msa0162240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38745320 | 38748206 | 38745320 | ID=Msa0162240;Name=Msa0162240 |
| chr1_4 | mRNA | 38745320 | 38748206 | 38745320 | ID=Msa0162240-mRNA-1;Parent=Msa0162240;Name=Msa0162240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|190 |
| chr1_4 | exon | 38747954 | 38748206 | 38747954 | ID=Msa0162240-mRNA-1:exon:11322;Parent=Msa0162240-mRNA-1 |
| chr1_4 | exon | 38747579 | 38747682 | 38747579 | ID=Msa0162240-mRNA-1:exon:11321;Parent=Msa0162240-mRNA-1 |
| chr1_4 | exon | 38746326 | 38746444 | 38746326 | ID=Msa0162240-mRNA-1:exon:11320;Parent=Msa0162240-mRNA-1 |
| chr1_4 | exon | 38745320 | 38745416 | 38745320 | ID=Msa0162240-mRNA-1:exon:11319;Parent=Msa0162240-mRNA-1 |
| chr1_4 | CDS | 38747954 | 38748206 | 38747954 | ID=Msa0162240-mRNA-1:cds;Parent=Msa0162240-mRNA-1 |
| chr1_4 | CDS | 38747579 | 38747682 | 38747579 | ID=Msa0162240-mRNA-1:cds;Parent=Msa0162240-mRNA-1 |
| chr1_4 | CDS | 38746326 | 38746444 | 38746326 | ID=Msa0162240-mRNA-1:cds;Parent=Msa0162240-mRNA-1 |
| chr1_4 | CDS | 38745320 | 38745416 | 38745320 | ID=Msa0162240-mRNA-1:cds;Parent=Msa0162240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
