Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070880 | sp|Q8LGG8|USPAL_ARATH | 25.595 | 168 | 104 | 3 | 80 | 238 | 7 | 162 | 1.21e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070880 | A0A072VJ06 | 97.895 | 190 | 4 | 0 | 58 | 247 | 1 | 190 | 3.64e-134 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0070880 | 0.858659 | 7.079103e-63 | -8.615850e-47 |
| Msa0070880 | Msa0118780 | 0.858490 | 7.951243e-63 | -8.615850e-47 |
| Msa0070880 | Msa0118810 | 0.801731 | 7.840596e-49 | -8.615850e-47 |
| Msa0070880 | Msa0162100 | 0.870948 | 9.919571e-67 | -8.615850e-47 |
| Msa0070880 | Msa0162130 | 0.822645 | 2.120842e-53 | -8.615850e-47 |
| Msa0070880 | Msa0162220 | 0.831721 | 1.421536e-55 | -8.615850e-47 |
| Msa0070880 | Msa0162230 | 0.847398 | 1.185805e-59 | -8.615850e-47 |
| Msa0070880 | Msa0162240 | 0.847211 | 1.334915e-59 | -8.615850e-47 |
| Msa0070880 | Msa0784860 | 0.813556 | 2.411464e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070880 | MtrunA17_Chr1g0176311 | 97.895 | 190 | 4 | 0 | 58 | 247 | 1 | 190 | 7.01e-138 | 385 |
| Msa0070880 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 77 | 247 | 1 | 177 | 1.22e-97 | 283 |
| Msa0070880 | MtrunA17_Chr1g0192651 | 40.741 | 162 | 83 | 3 | 80 | 241 | 10 | 158 | 1.23e-33 | 119 |
| Msa0070880 | MtrunA17_Chr1g0195661 | 36.364 | 176 | 100 | 3 | 70 | 244 | 3 | 167 | 3.07e-31 | 113 |
| Msa0070880 | MtrunA17_Chr1g0194801 | 35.294 | 170 | 94 | 5 | 74 | 240 | 2 | 158 | 3.74e-30 | 110 |
| Msa0070880 | MtrunA17_Chr5g0427291 | 35.976 | 164 | 96 | 4 | 81 | 238 | 10 | 170 | 1.04e-26 | 102 |
| Msa0070880 | MtrunA17_Chr7g0269301 | 33.929 | 168 | 98 | 3 | 78 | 244 | 7 | 162 | 1.32e-22 | 90.9 |
| Msa0070880 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 178 | 238 | 5 | 65 | 2.77e-18 | 76.6 |
| Msa0070880 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 80 | 238 | 6 | 157 | 3.50e-18 | 79.0 |
| Msa0070880 | MtrunA17_Chr2g0294421 | 31.138 | 167 | 104 | 3 | 80 | 244 | 6 | 163 | 7.70e-18 | 78.2 |
| Msa0070880 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 81 | 247 | 7 | 166 | 2.66e-17 | 76.6 |
| Msa0070880 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 80 | 244 | 26 | 187 | 3.95e-17 | 77.8 |
| Msa0070880 | MtrunA17_Chr6g0450171 | 31.959 | 97 | 66 | 0 | 142 | 238 | 66 | 162 | 1.42e-15 | 72.4 |
| Msa0070880 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 83 | 238 | 9 | 157 | 7.57e-14 | 67.4 |
| Msa0070880 | MtrunA17_Chr7g0240701 | 27.607 | 163 | 103 | 3 | 80 | 238 | 6 | 157 | 3.62e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070880 | AT3G11930.1 | 56.886 | 167 | 70 | 2 | 80 | 245 | 34 | 199 | 6.89e-68 | 208 |
| Msa0070880 | AT3G11930.2 | 57.143 | 168 | 69 | 3 | 80 | 245 | 34 | 200 | 1.23e-66 | 205 |
| Msa0070880 | AT3G11930.4 | 56.805 | 169 | 69 | 3 | 80 | 245 | 34 | 201 | 1.85e-66 | 204 |
| Msa0070880 | AT3G11930.3 | 49.485 | 194 | 69 | 4 | 80 | 245 | 34 | 226 | 3.83e-60 | 189 |
| Msa0070880 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 81 | 242 | 32 | 192 | 5.57e-58 | 183 |
| Msa0070880 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 81 | 242 | 32 | 185 | 4.28e-54 | 173 |
| Msa0070880 | AT1G09740.2 | 39.024 | 164 | 93 | 2 | 81 | 242 | 10 | 168 | 2.73e-30 | 111 |
| Msa0070880 | AT1G09740.1 | 39.024 | 164 | 93 | 2 | 81 | 242 | 10 | 168 | 2.73e-30 | 111 |
| Msa0070880 | AT2G47710.1 | 32.727 | 165 | 98 | 3 | 78 | 241 | 7 | 159 | 2.46e-25 | 98.2 |
| Msa0070880 | AT3G62550.1 | 34.731 | 167 | 95 | 4 | 74 | 238 | 2 | 156 | 2.48e-25 | 98.2 |
| Msa0070880 | AT1G68300.1 | 32.934 | 167 | 98 | 3 | 73 | 238 | 4 | 157 | 3.74e-24 | 95.1 |
| Msa0070880 | AT3G17020.1 | 31.677 | 161 | 100 | 2 | 80 | 238 | 8 | 160 | 9.47e-17 | 75.5 |
| Msa0070880 | AT3G01520.1 | 25.595 | 168 | 104 | 3 | 80 | 238 | 7 | 162 | 1.23e-16 | 75.5 |
| Msa0070880 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 81 | 238 | 7 | 157 | 2.46e-16 | 74.3 |
| Msa0070880 | AT5G14680.1 | 26.163 | 172 | 106 | 3 | 80 | 242 | 7 | 166 | 2.33e-15 | 72.0 |
| Msa0070880 | AT1G11360.2 | 29.480 | 173 | 102 | 4 | 78 | 242 | 37 | 197 | 1.50e-13 | 68.6 |
| Msa0070880 | AT1G11360.1 | 29.480 | 173 | 102 | 4 | 78 | 242 | 37 | 197 | 1.50e-13 | 68.6 |
| Msa0070880 | AT1G11360.4 | 29.480 | 173 | 102 | 4 | 78 | 242 | 37 | 197 | 1.50e-13 | 68.6 |
| Msa0070880 | AT1G11360.3 | 29.480 | 173 | 102 | 4 | 78 | 242 | 37 | 197 | 1.50e-13 | 68.6 |
| Msa0070880 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 83 | 241 | 9 | 160 | 3.77e-12 | 63.2 |
Find 77 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTATGTGCACCCTAT+TGG | 0.235333 | 1_2:+41779782 | Msa0070880:CDS |
| GTGCACATAATTGTGGAAAA+TGG | 0.245181 | 1_2:-41779774 | None:intergenic |
| GAACCAAACATATCTATTAA+TGG | 0.316982 | 1_2:+41778099 | Msa0070880:CDS |
| CCAGCACCACCTGGTCCAAT+AGG | 0.340944 | 1_2:-41779797 | None:intergenic |
| ATTTGGTGTAGAGCATTTCT+TGG | 0.348715 | 1_2:+41782242 | Msa0070880:intron |
| GAAGGGGTGATGGAAGAAAT+AGG | 0.364787 | 1_2:+41779557 | Msa0070880:CDS |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_2:+41781278 | Msa0070880:CDS |
| TCTTCCATCACCCCTTCCTT+TGG | 0.391444 | 1_2:-41779551 | None:intergenic |
| CCTATTGGACCAGGTGGTGC+TGG | 0.410297 | 1_2:+41779797 | Msa0070880:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_2:+41781263 | Msa0070880:CDS |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_2:-41781228 | None:intergenic |
| TTACCATTAATAGATATGTT+TGG | 0.428302 | 1_2:-41778102 | None:intergenic |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_2:+41781279 | Msa0070880:CDS |
| AAGAAAAGTAAGGTGGTTCA+TGG | 0.450981 | 1_2:+41778413 | Msa0070880:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_2:+41781227 | Msa0070880:CDS |
| TGCACATAATTGTGGAAAAT+GGG | 0.455217 | 1_2:-41779773 | None:intergenic |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_2:-41780135 | None:intergenic |
| ATAGGTAGAGCTATTGATGA+GGG | 0.460884 | 1_2:+41779575 | Msa0070880:CDS |
| TAGAGCTATTGATGAGGGGA+GGG | 0.474715 | 1_2:+41779580 | Msa0070880:CDS |
| TTATCCCGCATCTGTGGTCG+TGG | 0.476663 | 1_2:+41780096 | Msa0070880:CDS |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_2:+41781201 | Msa0070880:CDS |
| GGGAAGGTGCAGAAGAGAGA+AGG | 0.493160 | 1_2:+41779600 | Msa0070880:CDS |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_2:+41779724 | Msa0070880:CDS |
| ATATGTTTGGTTCACCAAGA+TGG | 0.501487 | 1_2:-41778089 | None:intergenic |
| GTGGCCTGGGCACACTCAAA+AGG | 0.501846 | 1_2:+41781292 | Msa0070880:CDS |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_2:+41780174 | Msa0070880:CDS |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_2:-41782302 | None:intergenic |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_2:-41781227 | None:intergenic |
| GCTACCAAAGGAAGGGGTGA+TGG | 0.509887 | 1_2:+41779547 | Msa0070880:intron |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_2:-41779717 | None:intergenic |
| CTATTCTAGCTACCAAAGGA+AGG | 0.510370 | 1_2:+41779539 | Msa0070880:intron |
| AGAGAGAAGGATGAAGATGA+AGG | 0.511016 | 1_2:+41779613 | Msa0070880:CDS |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_2:+41780147 | Msa0070880:CDS |
| GTTGTTCTGAAGTTCCATCT+TGG | 0.516623 | 1_2:+41778075 | Msa0070880:CDS |
| CAGCACCACCTGGTCCAATA+GGG | 0.517598 | 1_2:-41779796 | None:intergenic |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_2:-41779688 | None:intergenic |
| AGAAAAGTAAGGTGGTTCAT+GGG | 0.517738 | 1_2:+41778414 | Msa0070880:CDS |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_2:+41779730 | Msa0070880:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_2:+41780146 | Msa0070880:CDS |
| AAATACAGGACCACACTCAT+GGG | 0.537478 | 1_2:+41778374 | Msa0070880:intron |
| AAAATACAGGACCACACTCA+TGG | 0.537659 | 1_2:+41778373 | Msa0070880:intron |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_2:+41779700 | Msa0070880:CDS |
| TCCCTTCGCCAAGAAAAGTA+AGG | 0.540334 | 1_2:+41778443 | Msa0070880:CDS |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_2:+41781273 | Msa0070880:CDS |
| TCCCTTCGCCAAGAAAAGTA+AGG | 0.548803 | 1_2:+41778403 | Msa0070880:CDS |
| TATTCTAGCTACCAAAGGAA+GGG | 0.552378 | 1_2:+41779540 | Msa0070880:intron |
| CAATAGGGTGCACATAATTG+TGG | 0.554577 | 1_2:-41779781 | None:intergenic |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_2:+41780165 | Msa0070880:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_2:+41781264 | Msa0070880:CDS |
| GTCGTGGATTCAGTGAAGAA+AGG | 0.559666 | 1_2:+41780112 | Msa0070880:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_2:+41779704 | Msa0070880:CDS |
| GAATCCACGACCACAGATGC+GGG | 0.563340 | 1_2:-41780100 | None:intergenic |
| GTAGAGCTATTGATGAGGGG+AGG | 0.576366 | 1_2:+41779579 | Msa0070880:CDS |
| CTTTCTATTCTAGCTACCAA+AGG | 0.579287 | 1_2:+41779535 | Msa0070880:intron |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_2:+41779725 | Msa0070880:CDS |
| GAAAAGTAAGGTGGTTCATG+GGG | 0.592384 | 1_2:+41778415 | Msa0070880:CDS |
| GCTATTGATGAGGGGAGGGA+AGG | 0.597723 | 1_2:+41779584 | Msa0070880:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_2:-41779687 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_2:+41779622 | Msa0070880:CDS |
| AATAGGTAGAGCTATTGATG+AGG | 0.611252 | 1_2:+41779574 | Msa0070880:CDS |
| ATTCTAGCTACCAAAGGAAG+GGG | 0.614754 | 1_2:+41779541 | Msa0070880:intron |
| TGAATCCACGACCACAGATG+CGG | 0.616507 | 1_2:-41780101 | None:intergenic |
| TAGGTAGAGCTATTGATGAG+GGG | 0.618309 | 1_2:+41779576 | Msa0070880:CDS |
| CATGGCTCTCACATCATGCA+TGG | 0.620043 | 1_2:+41778053 | None:intergenic |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_2:+41781211 | Msa0070880:CDS |
| AGATACGAACCAGCACCACC+TGG | 0.633023 | 1_2:-41779806 | None:intergenic |
| TATGTGCACCCTATTGGACC+AGG | 0.634058 | 1_2:+41779788 | Msa0070880:CDS |
| AATACAGGACCACACTCATG+GGG | 0.637014 | 1_2:+41778375 | Msa0070880:intron |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_2:+41779619 | Msa0070880:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_2:+41779641 | Msa0070880:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_2:+41781212 | Msa0070880:CDS |
| CTTCGCCAAGAAAAGTAAGG+TGG | 0.677398 | 1_2:+41778406 | Msa0070880:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_2:+41782307 | Msa0070880:CDS |
| GTGCACCCTATTGGACCAGG+TGG | 0.681996 | 1_2:+41779791 | Msa0070880:CDS |
| CTTCGCCAAGAAAAGTAAGG+CGG | 0.687520 | 1_2:+41778446 | Msa0070880:CDS |
| AAAAGTAAGGTGGTTCATGG+GGG | 0.725847 | 1_2:+41778416 | Msa0070880:CDS |
| ATACAGGACCACACTCATGG+GGG | 0.751815 | 1_2:+41778376 | Msa0070880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTGTATTTATAATAAAT+TGG | - | chr1_2:41778192-41778211 | None:intergenic | 10.0% |
| !! | TATAAATACAAAACATTTAT+AGG | + | chr1_2:41778198-41778217 | Msa0070880:intron | 10.0% |
| !! | TGATAAAAAAAAAAAAAACA+AGG | + | chr1_2:41778288-41778307 | Msa0070880:intron | 10.0% |
| !! | AGCATTAAATTAATTTATTT+AGG | + | chr1_2:41778787-41778806 | Msa0070880:intron | 10.0% |
| !! | GCATTAAATTAATTTATTTA+GGG | + | chr1_2:41778788-41778807 | Msa0070880:intron | 10.0% |
| !!! | TAACTAATAATTTATTGATT+TGG | + | chr1_2:41779136-41779155 | Msa0070880:intron | 10.0% |
| !! | TAAAAAAAGCAAAAAAATTT+GGG | + | chr1_2:41780981-41781000 | Msa0070880:intron | 10.0% |
| !! | AAATGATAAAAATTAAAAGA+TGG | - | chr1_2:41781058-41781077 | None:intergenic | 10.0% |
| !! | GATAATTTGATATATTTATA+GGG | + | chr1_2:41781849-41781868 | Msa0070880:intron | 10.0% |
| !! | ATAATTTGATATATTTATAG+GGG | + | chr1_2:41781850-41781869 | Msa0070880:intron | 10.0% |
| !! | TTAAATTAAATGAAAAAGAA+GGG | - | chr1_2:41781892-41781911 | None:intergenic | 10.0% |
| !! | GATTTAGATATTATAGTTAT+AGG | + | chr1_2:41779075-41779094 | Msa0070880:intron | 15.0% |
| !!! | ACTCAATTTTTTTTTTTTGA+AGG | + | chr1_2:41779170-41779189 | Msa0070880:intron | 15.0% |
| !! | AATTTGTAAATTCAATTGAT+TGG | - | chr1_2:41780498-41780517 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | - | chr1_2:41780696-41780715 | None:intergenic | 15.0% |
| !! | TGAATCAATTAAATTAGAAA+AGG | - | chr1_2:41780848-41780867 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | + | chr1_2:41780906-41780925 | Msa0070880:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | + | chr1_2:41780907-41780926 | Msa0070880:intron | 15.0% |
| !! | GTAAAAAAAGCAAAAAAATT+TGG | + | chr1_2:41780980-41780999 | Msa0070880:intron | 15.0% |
| !!! | TTAATTTTTATCATTTGTGT+AGG | + | chr1_2:41781062-41781081 | Msa0070880:intron | 15.0% |
| !!! | AGTCCAAATTAATTTTATTT+GGG | + | chr1_2:41781085-41781104 | Msa0070880:intron | 15.0% |
| !!! | GATATGAATTTTTAGATTTT+TGG | + | chr1_2:41781630-41781649 | Msa0070880:intron | 15.0% |
| !!! | TTAAAAAAATTCTACTTTTC+TGG | + | chr1_2:41781685-41781704 | Msa0070880:intron | 15.0% |
| !! | CGATAATTTGATATATTTAT+AGG | + | chr1_2:41781848-41781867 | Msa0070880:intron | 15.0% |
| !! | CTTAAATTAAATGAAAAAGA+AGG | - | chr1_2:41781893-41781912 | None:intergenic | 15.0% |
| !! | TAATAATTTAAAGGTAAGAT+TGG | - | chr1_2:41782023-41782042 | None:intergenic | 15.0% |
| !! | TTCAAAATGAATATCATTTA+AGG | - | chr1_2:41782167-41782186 | None:intergenic | 15.0% |
| !!! | AAATGATATTCATTTTGAAA+CGG | + | chr1_2:41782168-41782187 | Msa0070880:intron | 15.0% |
| !! | TTACCATTAATAGATATGTT+TGG | - | chr1_2:41778105-41778124 | None:intergenic | 20.0% |
| !! | AAAATATGTAACAACTCAAT+TGG | - | chr1_2:41778230-41778249 | None:intergenic | 20.0% |
| !!! | CACTCAAATTTTTTAATGTA+CGG | + | chr1_2:41779196-41779215 | Msa0070880:intron | 20.0% |
| !! | CACAAATGAACAAATATAAA+TGG | - | chr1_2:41779231-41779250 | None:intergenic | 20.0% |
| !! | TGAATGAAAAATATGTAAAC+CGG | - | chr1_2:41779482-41779501 | None:intergenic | 20.0% |
| !! | ATAGAAAGAAAGAGATAAAA+TGG | - | chr1_2:41779523-41779542 | None:intergenic | 20.0% |
| !!! | TTCTAAAGAAAGATATTCAA+TGG | - | chr1_2:41779850-41779869 | None:intergenic | 20.0% |
| !! | AAATATCAAAATTGCTTAGT+CGG | - | chr1_2:41779938-41779957 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTATTTGAGTAG+AGG | - | chr1_2:41780224-41780243 | None:intergenic | 20.0% |
| !! | TGGAATCCTTAAAAAATAAT+CGG | - | chr1_2:41780431-41780450 | None:intergenic | 20.0% |
| !! | TAAGGTATATTTGATTGATA+GGG | - | chr1_2:41780662-41780681 | None:intergenic | 20.0% |
| !! | TTAAGGTATATTTGATTGAT+AGG | - | chr1_2:41780663-41780682 | None:intergenic | 20.0% |
| !!! | TCAATTTTGGAAAACTTAAT+GGG | - | chr1_2:41780744-41780763 | None:intergenic | 20.0% |
| !!! | TTCAATTTTGGAAAACTTAA+TGG | - | chr1_2:41780745-41780764 | None:intergenic | 20.0% |
| !!! | TAGTCAAATGTTTTCAATTT+TGG | - | chr1_2:41780757-41780776 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | + | chr1_2:41780908-41780927 | Msa0070880:intron | 20.0% |
| !!! | GAGTCCAAATTAATTTTATT+TGG | + | chr1_2:41781084-41781103 | Msa0070880:intron | 20.0% |
| !!! | GTCCAAATTAATTTTATTTG+GGG | + | chr1_2:41781086-41781105 | Msa0070880:intron | 20.0% |
| !! | TACCCCAAATAAAATTAATT+TGG | - | chr1_2:41781091-41781110 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGAGGGAAAAA+AGG | + | chr1_2:41781321-41781340 | Msa0070880:intron | 20.0% |
| !!! | AGTTGAAGAAATTTGTTATA+AGG | - | chr1_2:41781451-41781470 | None:intergenic | 20.0% |
| !!! | ATGAAAATAGAAAACTTTTG+AGG | - | chr1_2:41781480-41781499 | None:intergenic | 20.0% |
| !!! | ATGAATTTTTAGATTTTTGG+AGG | + | chr1_2:41781633-41781652 | Msa0070880:intron | 20.0% |
| !!! | AAAATAGTCTTGTTACATAT+TGG | - | chr1_2:41782086-41782105 | None:intergenic | 20.0% |
| !!! | TATTGATTTTGGTTTCATTT+TGG | + | chr1_2:41782197-41782216 | Msa0070880:intron | 20.0% |
| !!! | GATTACCCTTTTTTTATATT+TGG | + | chr1_2:41782225-41782244 | Msa0070880:intron | 20.0% |
| !! | CTACACCAAATATAAAAAAA+GGG | - | chr1_2:41782233-41782252 | None:intergenic | 20.0% |
| !! | TCTACACCAAATATAAAAAA+AGG | - | chr1_2:41782234-41782253 | None:intergenic | 20.0% |
| ! | GAACCAAACATATCTATTAA+TGG | + | chr1_2:41778099-41778118 | Msa0070880:CDS | 25.0% |
| ! | ACATATCTATTAATGGTAAG+TGG | + | chr1_2:41778106-41778125 | Msa0070880:intron | 25.0% |
| ! | AATGAGTTAAACAAGTGTTA+TGG | - | chr1_2:41778149-41778168 | None:intergenic | 25.0% |
| !!! | TTTATCATTTTTGGCAAATG+AGG | - | chr1_2:41778275-41778294 | None:intergenic | 25.0% |
| ! | TATTTGATATATCGTTATGC+TGG | - | chr1_2:41778741-41778760 | None:intergenic | 25.0% |
| ! | ATTTATTTAGGGAACTTCTA+CGG | + | chr1_2:41778799-41778818 | Msa0070880:intron | 25.0% |
| ! | CACTTTAATTAAATGAGCTA+GGG | - | chr1_2:41779342-41779361 | None:intergenic | 25.0% |
| ! | TCACTTTAATTAAATGAGCT+AGG | - | chr1_2:41779343-41779362 | None:intergenic | 25.0% |
| !! | TTAAAGATCTTCGTCTTTTT+CGG | - | chr1_2:41779369-41779388 | None:intergenic | 25.0% |
| !!! | TATTATCAACTTTCTGAAAC+CGG | + | chr1_2:41779460-41779479 | Msa0070880:intron | 25.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | - | chr1_2:41779690-41779709 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | - | chr1_2:41779691-41779710 | None:intergenic | 25.0% |
| ! | AAAGATATTCAATGGAGATA+AGG | - | chr1_2:41779842-41779861 | None:intergenic | 25.0% |
| ! | GTTGAAGTGATAAAATATTG+AGG | - | chr1_2:41780070-41780089 | None:intergenic | 25.0% |
| !!! | AATGTCCCGATTATTTTTTA+AGG | + | chr1_2:41780422-41780441 | Msa0070880:intron | 25.0% |
| ! | GGAATCCTTAAAAAATAATC+GGG | - | chr1_2:41780430-41780449 | None:intergenic | 25.0% |
| ! | AGAAAACAAGGAAATAACTT+GGG | - | chr1_2:41780531-41780550 | None:intergenic | 25.0% |
| ! | AAGAAAACAAGGAAATAACT+TGG | - | chr1_2:41780532-41780551 | None:intergenic | 25.0% |
| ! | TATTTGATTGATAGGGTATA+GGG | - | chr1_2:41780655-41780674 | None:intergenic | 25.0% |
| ! | ATATTTGATTGATAGGGTAT+AGG | - | chr1_2:41780656-41780675 | None:intergenic | 25.0% |
| !!! | GATATTTTCAATGGTTTGTT+GGG | - | chr1_2:41780687-41780706 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAATGGTTTGT+TGG | - | chr1_2:41780688-41780707 | None:intergenic | 25.0% |
| !!! | ACTATTTTTCTAGTTGCATT+AGG | + | chr1_2:41780773-41780792 | Msa0070880:intron | 25.0% |
| !! | ATGAACATTTTCACTAGATT+TGG | - | chr1_2:41781162-41781181 | None:intergenic | 25.0% |
| ! | TCTAGTGAAAATGTTCATTA+TGG | + | chr1_2:41781164-41781183 | Msa0070880:intron | 25.0% |
| !!! | AGGTTAGTGTTTTTTTTTTG+AGG | + | chr1_2:41781312-41781331 | Msa0070880:intron | 25.0% |
| !!! | GGTTAGTGTTTTTTTTTTGA+GGG | + | chr1_2:41781313-41781332 | Msa0070880:intron | 25.0% |
| ! | AAGGACTAAAACGAAAAAAT+CGG | - | chr1_2:41781432-41781451 | None:intergenic | 25.0% |
| !! | TACATGAGTTGACTTAAAAA+TGG | + | chr1_2:41781756-41781775 | Msa0070880:intron | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+GGG | + | chr1_2:41781757-41781776 | Msa0070880:intron | 25.0% |
| !! | AAATTTTCAATCACCACTTT+TGG | - | chr1_2:41781785-41781804 | None:intergenic | 25.0% |
| ! | TGAAAAAGAAGGGTTAAATA+TGG | - | chr1_2:41781882-41781901 | None:intergenic | 25.0% |
| !! | AATTGAAGTACTAACAAACT+TGG | + | chr1_2:41781933-41781952 | Msa0070880:intron | 25.0% |
| ! | TAAAGGTAAGATTGGAAAAA+AGG | - | chr1_2:41782015-41782034 | None:intergenic | 25.0% |
| !! | CATTTTCCATTATGATACTT+TGG | - | chr1_2:41782061-41782080 | None:intergenic | 25.0% |
| GTCAAAGCATGCATAATTAA+TGG | - | chr1_2:41778253-41778272 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr1_2:41778534-41778553 | None:intergenic | 30.0% | |
| ! | TTAAAGATAACTCGATTCGT+TGG | + | chr1_2:41778607-41778626 | Msa0070880:intron | 30.0% |
| TTCTCACTTACAAAATACGT+TGG | + | chr1_2:41778694-41778713 | Msa0070880:intron | 30.0% | |
| TCTCACTTACAAAATACGTT+GGG | + | chr1_2:41778695-41778714 | Msa0070880:intron | 30.0% | |
| TACGGTACACTCATAAATTA+AGG | + | chr1_2:41778817-41778836 | Msa0070880:intron | 30.0% | |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | + | chr1_2:41779664-41779683 | Msa0070880:CDS | 30.0% |
| TGCACATAATTGTGGAAAAT+GGG | - | chr1_2:41779776-41779795 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | + | chr1_2:41780336-41780355 | Msa0070880:intron | 30.0% | |
| ! | CAAGTGGTTAATATGTTTTG+AGG | + | chr1_2:41780352-41780371 | Msa0070880:intron | 30.0% |
| ! | TTGAGTTTGGATTTTGTCAT+AGG | + | chr1_2:41780387-41780406 | Msa0070880:intron | 30.0% |
| ! | TGAGTTTGGATTTTGTCATA+GGG | + | chr1_2:41780388-41780407 | Msa0070880:intron | 30.0% |
| !!! | ATTACACCCTTTGTTTTTCT+TGG | + | chr1_2:41780554-41780573 | Msa0070880:intron | 30.0% |
| CTTTGACCAAGAAAAACAAA+GGG | - | chr1_2:41780563-41780582 | None:intergenic | 30.0% | |
| TGCTTTGACAACTAACTAAT+AGG | - | chr1_2:41780628-41780647 | None:intergenic | 30.0% | |
| TTTGGAAAACTTAATGGGAT+GGG | - | chr1_2:41780739-41780758 | None:intergenic | 30.0% | |
| !! | TTTTGGAAAACTTAATGGGA+TGG | - | chr1_2:41780740-41780759 | None:intergenic | 30.0% |
| !! | GGTATGATTTGTGTGTTTTA+GGG | - | chr1_2:41780804-41780823 | None:intergenic | 30.0% |
| !! | AGGTATGATTTGTGTGTTTT+AGG | - | chr1_2:41780805-41780824 | None:intergenic | 30.0% |
| AGAAGACTGATAAAAGAACA+AGG | - | chr1_2:41780825-41780844 | None:intergenic | 30.0% | |
| ! | TTAAGAAGAGAGTATATACG+TGG | - | chr1_2:41781125-41781144 | None:intergenic | 30.0% |
| AATGTTCATTATGGAATTGC+AGG | + | chr1_2:41781173-41781192 | Msa0070880:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | + | chr1_2:41781264-41781283 | Msa0070880:CDS | 30.0% |
| CACATGAGTTTACTTAAAAG+AGG | - | chr1_2:41781510-41781529 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTTAAAAATG+GGG | + | chr1_2:41781758-41781777 | Msa0070880:intron | 30.0% |
| ! | CAACTTCCAAAGTATCATAA+TGG | + | chr1_2:41782052-41782071 | Msa0070880:intron | 30.0% |
| !!! | AACGGAAAGAGTATTGATTT+TGG | + | chr1_2:41782186-41782205 | Msa0070880:intron | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | + | chr1_2:41782203-41782222 | Msa0070880:intron | 30.0% |
| ! | ATATGTTTGGTTCACCAAGA+TGG | - | chr1_2:41778092-41778111 | None:intergenic | 35.0% |
| ! | TATTTTGTCGGGAAATTCGA+TGG | - | chr1_2:41778359-41778378 | None:intergenic | 35.0% |
| !! | ATGAACCACCTTACTTTTCT+TGG | - | chr1_2:41778414-41778433 | None:intergenic | 35.0% |
| AAGAAAAGTAAGGTGGTTCA+TGG | + | chr1_2:41778413-41778432 | Msa0070880:CDS | 35.0% | |
| AGAAAAGTAAGGTGGTTCAT+GGG | + | chr1_2:41778414-41778433 | Msa0070880:CDS | 35.0% | |
| AGGTTATCTACTAGATGAGT+CGG | + | chr1_2:41778472-41778491 | Msa0070880:intron | 35.0% | |
| !!! | TAGATGAGTCGGAGTTTTTT+TGG | + | chr1_2:41778483-41778502 | Msa0070880:intron | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | chr1_2:41778529-41778548 | None:intergenic | 35.0% | |
| TCATTTGTGCATGAAGCTAT+TGG | + | chr1_2:41779242-41779261 | Msa0070880:intron | 35.0% | |
| CATTTGTGCATGAAGCTATT+GGG | + | chr1_2:41779243-41779262 | Msa0070880:intron | 35.0% | |
| TCATGCAAGAATATTGTAGC+TGG | + | chr1_2:41779300-41779319 | Msa0070880:intron | 35.0% | |
| ! | CTTTCTATTCTAGCTACCAA+AGG | + | chr1_2:41779535-41779554 | Msa0070880:intron | 35.0% |
| ! | TATTCTAGCTACCAAAGGAA+GGG | + | chr1_2:41779540-41779559 | Msa0070880:intron | 35.0% |
| AATAGGTAGAGCTATTGATG+AGG | + | chr1_2:41779574-41779593 | Msa0070880:CDS | 35.0% | |
| ATAGGTAGAGCTATTGATGA+GGG | + | chr1_2:41779575-41779594 | Msa0070880:CDS | 35.0% | |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | + | chr1_2:41779663-41779682 | Msa0070880:CDS | 35.0% |
| AGGAACATCATCTGAAAATG+AGG | + | chr1_2:41779724-41779743 | Msa0070880:CDS | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | + | chr1_2:41779725-41779744 | Msa0070880:CDS | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | + | chr1_2:41779730-41779749 | Msa0070880:CDS | 35.0% | |
| GTGCACATAATTGTGGAAAA+TGG | - | chr1_2:41779777-41779796 | None:intergenic | 35.0% | |
| ! | GTGCTCAAGAAATTTGAGTT+TGG | + | chr1_2:41780374-41780393 | Msa0070880:intron | 35.0% |
| GGGTGTAATTGAAGAAAACA+AGG | - | chr1_2:41780543-41780562 | None:intergenic | 35.0% | |
| GCTTTGACCAAGAAAAACAA+AGG | - | chr1_2:41780564-41780583 | None:intergenic | 35.0% | |
| TAGATCAATTACCCCTTATC+TGG | - | chr1_2:41780586-41780605 | None:intergenic | 35.0% | |
| AAGGGGTAATTGATCTACAA+AGG | + | chr1_2:41780589-41780608 | Msa0070880:intron | 35.0% | |
| AGGGGTAATTGATCTACAAA+GGG | + | chr1_2:41780590-41780609 | Msa0070880:intron | 35.0% | |
| !! | TCAATGGTTTGTTGGGATTA+AGG | - | chr1_2:41780680-41780699 | None:intergenic | 35.0% |
| !!! | TGATTTGTGTGTTTTAGGGA+GGG | - | chr1_2:41780800-41780819 | None:intergenic | 35.0% |
| !!! | ATGATTTGTGTGTTTTAGGG+AGG | - | chr1_2:41780801-41780820 | None:intergenic | 35.0% |
| TCTCATATATGTCTTGCCTT+GGG | - | chr1_2:41780893-41780912 | None:intergenic | 35.0% | |
| TTCTCATATATGTCTTGCCT+TGG | - | chr1_2:41780894-41780913 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | + | chr1_2:41781201-41781220 | Msa0070880:CDS | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | + | chr1_2:41781263-41781282 | Msa0070880:CDS | 35.0% |
| TTAAAAATGGGGACCAAAAG+TGG | + | chr1_2:41781769-41781788 | Msa0070880:intron | 35.0% | |
| TTATAGAGACTAAAAGCCGA+AGG | + | chr1_2:41781804-41781823 | Msa0070880:intron | 35.0% | |
| ! | AAGCCGAAGGAAAATTTTCA+AGG | + | chr1_2:41781817-41781836 | Msa0070880:intron | 35.0% |
| ! | AGCCGAAGGAAAATTTTCAA+GGG | + | chr1_2:41781818-41781837 | Msa0070880:intron | 35.0% |
| ! | GTCCCTTGAAAATTTTCCTT+CGG | - | chr1_2:41781823-41781842 | None:intergenic | 35.0% |
| TAACAAACTTGGTACTCTCT+CGG | + | chr1_2:41781944-41781963 | Msa0070880:intron | 35.0% | |
| !! | ATTTGGTGTAGAGCATTTCT+TGG | + | chr1_2:41782242-41782261 | Msa0070880:intron | 35.0% |
| !! | GTTGTTCTGAAGTTCCATCT+TGG | + | chr1_2:41778075-41778094 | Msa0070880:CDS | 40.0% |
| CGAATTTCCCGACAAAATAC+AGG | + | chr1_2:41778360-41778379 | Msa0070880:intron | 40.0% | |
| ! | AGTGTGGTCCTGTATTTTGT+CGG | - | chr1_2:41778371-41778390 | None:intergenic | 40.0% |
| AAAATACAGGACCACACTCA+TGG | + | chr1_2:41778373-41778392 | Msa0070880:intron | 40.0% | |
| AAATACAGGACCACACTCAT+GGG | + | chr1_2:41778374-41778393 | Msa0070880:intron | 40.0% | |
| !! | ACCTTACTTTTCTTGGCGAA+GGG | - | chr1_2:41778407-41778426 | None:intergenic | 40.0% |
| GAAAAGTAAGGTGGTTCATG+GGG | + | chr1_2:41778415-41778434 | Msa0070880:CDS | 40.0% | |
| AAAAGTAAGGTGGTTCATGG+GGG | + | chr1_2:41778416-41778435 | Msa0070880:CDS | 40.0% | |
| !! | CTAAACCGCCTTACTTTTCT+TGG | - | chr1_2:41778454-41778473 | None:intergenic | 40.0% |
| CAAGAAAAGTAAGGCGGTTT+AGG | + | chr1_2:41778452-41778471 | Msa0070880:intron | 40.0% | |
| !!! | AGTCGGAGTTTTTTTGGTAG+TGG | + | chr1_2:41778489-41778508 | Msa0070880:intron | 40.0% |
| !!! | GGAGTTTTTTTGGTAGTGGT+CGG | + | chr1_2:41778493-41778512 | Msa0070880:intron | 40.0% |
| !!! | GAGTTTTTTTGGTAGTGGTC+GGG | + | chr1_2:41778494-41778513 | Msa0070880:intron | 40.0% |
| !!! | AGTTTTTTTGGTAGTGGTCG+GGG | + | chr1_2:41778495-41778514 | Msa0070880:intron | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | chr1_2:41778527-41778546 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr1_2:41778528-41778547 | None:intergenic | 40.0% | |
| GCTATTGGGTGATATACATG+CGG | + | chr1_2:41779257-41779276 | Msa0070880:intron | 40.0% | |
| CTATTGGGTGATATACATGC+GGG | + | chr1_2:41779258-41779277 | Msa0070880:intron | 40.0% | |
| TATTGGGTGATATACATGCG+GGG | + | chr1_2:41779259-41779278 | Msa0070880:intron | 40.0% | |
| !! | AATGAGCTAGGGTTGATACT+TGG | - | chr1_2:41779331-41779350 | None:intergenic | 40.0% |
| !!! | AAGATCTTCGTCTTTTTCGG+TGG | - | chr1_2:41779366-41779385 | None:intergenic | 40.0% |
| ! | CTATTCTAGCTACCAAAGGA+AGG | + | chr1_2:41779539-41779558 | Msa0070880:intron | 40.0% |
| ! | ATTCTAGCTACCAAAGGAAG+GGG | + | chr1_2:41779541-41779560 | Msa0070880:intron | 40.0% |
| TAGGTAGAGCTATTGATGAG+GGG | + | chr1_2:41779576-41779595 | Msa0070880:CDS | 40.0% | |
| AGAGAGAAGGATGAAGATGA+AGG | + | chr1_2:41779613-41779632 | Msa0070880:CDS | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | + | chr1_2:41779619-41779638 | Msa0070880:CDS | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | + | chr1_2:41779700-41779719 | Msa0070880:CDS | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | + | chr1_2:41779704-41779723 | Msa0070880:CDS | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | - | chr1_2:41779720-41779739 | None:intergenic | 40.0% | |
| CAATAGGGTGCACATAATTG+TGG | - | chr1_2:41779784-41779803 | None:intergenic | 40.0% | |
| CACAATTATGTGCACCCTAT+TGG | + | chr1_2:41779782-41779801 | Msa0070880:CDS | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | - | chr1_2:41780138-41780157 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | + | chr1_2:41780146-41780165 | Msa0070880:CDS | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | + | chr1_2:41780147-41780166 | Msa0070880:CDS | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | - | chr1_2:41780210-41780229 | None:intergenic | 40.0% | |
| TTCTTGGTCAAAGCCAGATA+AGG | + | chr1_2:41780570-41780589 | Msa0070880:intron | 40.0% | |
| TCTTGGTCAAAGCCAGATAA+GGG | + | chr1_2:41780571-41780590 | Msa0070880:intron | 40.0% | |
| GAAAACTTAATGGGATGGGT+GGG | - | chr1_2:41780735-41780754 | None:intergenic | 40.0% | |
| ATATATGTCTTGCCTTGGGT+GGG | - | chr1_2:41780889-41780908 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | + | chr1_2:41781211-41781230 | Msa0070880:CDS | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | + | chr1_2:41781212-41781231 | Msa0070880:CDS | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | - | chr1_2:41781230-41781249 | None:intergenic | 40.0% | |
| ! | GTGTGGTCCTGTATTTTGTC+GGG | - | chr1_2:41778370-41778389 | None:intergenic | 45.0% |
| AATACAGGACCACACTCATG+GGG | + | chr1_2:41778375-41778394 | Msa0070880:intron | 45.0% | |
| TCCCTTCGCCAAGAAAAGTA+AGG | + | chr1_2:41778403-41778422 | Msa0070880:CDS | 45.0% | |
| !! | CACCTTACTTTTCTTGGCGA+AGG | - | chr1_2:41778408-41778427 | None:intergenic | 45.0% |
| CTTCGCCAAGAAAAGTAAGG+TGG | + | chr1_2:41778406-41778425 | Msa0070880:CDS | 45.0% | |
| TCCCTTCGCCAAGAAAAGTA+AGG | + | chr1_2:41778403-41778422 | Msa0070880:CDS | 45.0% | |
| !! | GCCTTACTTTTCTTGGCGAA+GGG | - | chr1_2:41778447-41778466 | None:intergenic | 45.0% |
| CTTCGCCAAGAAAAGTAAGG+CGG | + | chr1_2:41778406-41778425 | Msa0070880:CDS | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1_2:41778556-41778575 | None:intergenic | 45.0% |
| CGATTCGTTGGATCATGAGA+CGG | + | chr1_2:41778619-41778638 | Msa0070880:intron | 45.0% | |
| !! | GAAGGGGTGATGGAAGAAAT+AGG | + | chr1_2:41779557-41779576 | Msa0070880:CDS | 45.0% |
| TAGAGCTATTGATGAGGGGA+GGG | + | chr1_2:41779580-41779599 | Msa0070880:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | + | chr1_2:41779622-41779641 | Msa0070880:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | + | chr1_2:41779641-41779660 | Msa0070880:CDS | 45.0% | |
| TTAGTCGGACAATGTGATCC+GGG | - | chr1_2:41779923-41779942 | None:intergenic | 45.0% | |
| CTTAGTCGGACAATGTGATC+CGG | - | chr1_2:41779924-41779943 | None:intergenic | 45.0% | |
| ! | GCGCGTTGAATTGAGACTTT+TGG | + | chr1_2:41779960-41779979 | Msa0070880:intron | 45.0% |
| ! | AGCTTTTTATCCCGCATCTG+TGG | + | chr1_2:41780090-41780109 | Msa0070880:intron | 45.0% |
| GTCGTGGATTCAGTGAAGAA+AGG | + | chr1_2:41780112-41780131 | Msa0070880:CDS | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | + | chr1_2:41780174-41780193 | Msa0070880:CDS | 45.0% | |
| CTTGGTCAAAGCCAGATAAG+GGG | + | chr1_2:41780572-41780591 | Msa0070880:intron | 45.0% | |
| !! | GGTGGGTGTGATTTTGGAAA+GGG | - | chr1_2:41780718-41780737 | None:intergenic | 45.0% |
| GGAAAACTTAATGGGATGGG+TGG | - | chr1_2:41780736-41780755 | None:intergenic | 45.0% | |
| ! | GGTGGGTTCACTTCTTAAGT+GGG | - | chr1_2:41780872-41780891 | None:intergenic | 45.0% |
| TTAAGAAGTGAACCCACCCA+AGG | + | chr1_2:41780874-41780893 | Msa0070880:intron | 45.0% | |
| CATATATGTCTTGCCTTGGG+TGG | - | chr1_2:41780890-41780909 | None:intergenic | 45.0% | |
| ! | CCCAAGGGAAATGATTTGTC+AGG | + | chr1_2:41781227-41781246 | Msa0070880:CDS | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | - | chr1_2:41781231-41781250 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | - | chr1_2:41782305-41782324 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | - | chr1_2:41782323-41782342 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | - | chr1_2:41782326-41782345 | None:intergenic | 45.0% |
| !!! | TTTTGTATTTATAATAAATT+GGG | - | chr1_2:41778191-41778210 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTATCATTTT+TGG | - | chr1_2:41778284-41778303 | None:intergenic | 5.0% |
| !! | TGAAATTAAATTAAATTAAA+TGG | + | chr1_2:41780322-41780341 | Msa0070880:intron | 5.0% |
| !!! | AAGAATAAAAATTTTAAATT+TGG | - | chr1_2:41780451-41780470 | None:intergenic | 5.0% |
| !! | TAAAAAAAATATAGAAAATA+TGG | - | chr1_2:41781376-41781395 | None:intergenic | 5.0% |
| !!! | ATATTTTCTATATTTTTTTT+AGG | + | chr1_2:41781375-41781394 | Msa0070880:intron | 5.0% |
| !!! | TATTTTCTATATTTTTTTTA+GGG | + | chr1_2:41781376-41781395 | Msa0070880:intron | 5.0% |
| !!! | AAAAATTCTAATTATTTTTT+GGG | - | chr1_2:41781593-41781612 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTATTTTT+TGG | - | chr1_2:41781594-41781613 | None:intergenic | 5.0% |
| !! | TGTTTATAATAATAATTTAA+AGG | - | chr1_2:41782032-41782051 | None:intergenic | 5.0% |
| ATACAGGACCACACTCATGG+GGG | + | chr1_2:41778376-41778395 | Msa0070880:intron | 50.0% | |
| !! | CGCCTTACTTTTCTTGGCGA+AGG | - | chr1_2:41778448-41778467 | None:intergenic | 50.0% |
| TCTTCCATCACCCCTTCCTT+TGG | - | chr1_2:41779554-41779573 | None:intergenic | 50.0% | |
| GTAGAGCTATTGATGAGGGG+AGG | + | chr1_2:41779579-41779598 | Msa0070880:CDS | 50.0% | |
| TATGTGCACCCTATTGGACC+AGG | + | chr1_2:41779788-41779807 | Msa0070880:CDS | 50.0% | |
| ATGACCACGACGCACATAAG+TGG | + | chr1_2:41779880-41779899 | Msa0070880:intron | 50.0% | |
| GCACATAAGTGGAGGAGTCA+GGG | + | chr1_2:41779891-41779910 | Msa0070880:intron | 50.0% | |
| TGAATCCACGACCACAGATG+CGG | - | chr1_2:41780104-41780123 | None:intergenic | 50.0% | |
| !! | GGGTGGGTGTGATTTTGGAA+AGG | - | chr1_2:41780719-41780738 | None:intergenic | 50.0% |
| ! | GGGTGGGTTCACTTCTTAAG+TGG | - | chr1_2:41780873-41780892 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | + | chr1_2:41781273-41781292 | Msa0070880:CDS | 50.0% | |
| !! | CTAACCTTTTGAGTGTGCCC+AGG | - | chr1_2:41781299-41781318 | None:intergenic | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | + | chr1_2:41782307-41782326 | Msa0070880:CDS | 50.0% | |
| TGCGTCAGAGCGTATTCGCT+AGG | + | chr1_2:41778315-41778334 | Msa0070880:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1_2:41778561-41778580 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr1_2:41778558-41778577 | Msa0070880:intron | 55.0% | |
| GCTCACGAGGACAGATGAGT+CGG | + | chr1_2:41778571-41778590 | Msa0070880:intron | 55.0% | |
| GCTACCAAAGGAAGGGGTGA+TGG | + | chr1_2:41779547-41779566 | Msa0070880:intron | 55.0% | |
| GCTATTGATGAGGGGAGGGA+AGG | + | chr1_2:41779584-41779603 | Msa0070880:CDS | 55.0% | |
| ! | GGGAAGGTGCAGAAGAGAGA+AGG | + | chr1_2:41779600-41779619 | Msa0070880:CDS | 55.0% |
| CAGCACCACCTGGTCCAATA+GGG | - | chr1_2:41779799-41779818 | None:intergenic | 55.0% | |
| AGATACGAACCAGCACCACC+TGG | - | chr1_2:41779809-41779828 | None:intergenic | 55.0% | |
| ACCACGACGCACATAAGTGG+AGG | + | chr1_2:41779883-41779902 | Msa0070880:intron | 55.0% | |
| TCCTCCACTTATGTGCGTCG+TGG | - | chr1_2:41779887-41779906 | None:intergenic | 55.0% | |
| CGCACATAAGTGGAGGAGTC+AGG | + | chr1_2:41779890-41779909 | Msa0070880:intron | 55.0% | |
| TTATCCCGCATCTGTGGTCG+TGG | + | chr1_2:41780096-41780115 | Msa0070880:CDS | 55.0% | |
| GAATCCACGACCACAGATGC+GGG | - | chr1_2:41780103-41780122 | None:intergenic | 55.0% | |
| GCGGGCTTTGCAAATGTGCA+AGG | + | chr1_2:41780165-41780184 | Msa0070880:CDS | 55.0% | |
| ! | GGGATGGGTGGGTGTGATTT+TGG | - | chr1_2:41780724-41780743 | None:intergenic | 55.0% |
| !! | TTTTGAGTGTGCCCAGGCCA+CGG | - | chr1_2:41781293-41781312 | None:intergenic | 55.0% |
| TCGCTAGGCGAGCAAGAGCA+AGG | + | chr1_2:41778330-41778349 | Msa0070880:intron | 60.0% | |
| GTGCACCCTATTGGACCAGG+TGG | + | chr1_2:41779791-41779810 | Msa0070880:CDS | 60.0% | |
| CCAGCACCACCTGGTCCAAT+AGG | - | chr1_2:41779800-41779819 | None:intergenic | 60.0% | |
| CCTATTGGACCAGGTGGTGC+TGG | + | chr1_2:41779797-41779816 | Msa0070880:CDS | 60.0% | |
| ! | GAGGAGTCAGGGTTCTGACC+CGG | + | chr1_2:41779902-41779921 | Msa0070880:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | + | chr1_2:41781278-41781297 | Msa0070880:CDS | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | + | chr1_2:41781279-41781298 | Msa0070880:CDS | 60.0% | |
| GTGGCCTGGGCACACTCAAA+AGG | + | chr1_2:41781292-41781311 | Msa0070880:CDS | 60.0% | |
| GGGATGCTCCCCCATGAGTG+TGG | - | chr1_2:41778387-41778406 | None:intergenic | 65.0% | |
| AGTGGTCGGGGTTCGAACCC+CGG | + | chr1_2:41778507-41778526 | Msa0070880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41778054 | 41782349 | 41778054 | ID=Msa0070880;Name=Msa0070880 |
| chr1_2 | mRNA | 41778054 | 41782349 | 41778054 | ID=Msa0070880-mRNA-1;Parent=Msa0070880;Name=Msa0070880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.66|1|1|6|0|247 |
| chr1_2 | exon | 41778054 | 41778120 | 41778054 | ID=Msa0070880-mRNA-1:exon:12781;Parent=Msa0070880-mRNA-1 |
| chr1_2 | exon | 41778382 | 41778467 | 41778382 | ID=Msa0070880-mRNA-1:exon:12782;Parent=Msa0070880-mRNA-1 |
| chr1_2 | exon | 41779548 | 41779818 | 41779548 | ID=Msa0070880-mRNA-1:exon:12783;Parent=Msa0070880-mRNA-1 |
| chr1_2 | exon | 41780092 | 41780195 | 41780092 | ID=Msa0070880-mRNA-1:exon:12784;Parent=Msa0070880-mRNA-1 |
| chr1_2 | exon | 41781195 | 41781313 | 41781195 | ID=Msa0070880-mRNA-1:exon:12785;Parent=Msa0070880-mRNA-1 |
| chr1_2 | exon | 41782253 | 41782349 | 41782253 | ID=Msa0070880-mRNA-1:exon:12786;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41778054 | 41778120 | 41778054 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41778382 | 41778467 | 41778382 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41779548 | 41779818 | 41779548 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41780092 | 41780195 | 41780092 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41781195 | 41781313 | 41781195 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| chr1_2 | CDS | 41782253 | 41782349 | 41782253 | ID=Msa0070880-mRNA-1:cds;Parent=Msa0070880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
