Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118780 | sp|Q8LGG8|USPAL_ARATH | 25.595 | 168 | 104 | 3 | 24 | 182 | 7 | 162 | 2.87e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118780 | A0A072VJ06 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 7.82e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0118780 | 0.823627 | 1.250853e-53 | -8.615850e-47 |
| Msa0013050 | Msa0118780 | -0.814183 | 1.754065e-51 | -8.615850e-47 |
| Msa0023000 | Msa0118780 | 0.949970 | 4.308414e-108 | -8.615850e-47 |
| Msa0027260 | Msa0118780 | 0.814286 | 1.664892e-51 | -8.615850e-47 |
| Msa0032580 | Msa0118780 | 0.810448 | 1.146698e-50 | -8.615850e-47 |
| Msa0055180 | Msa0118780 | 0.843196 | 1.625457e-58 | -8.615850e-47 |
| Msa0058300 | Msa0118780 | 0.836712 | 7.966671e-57 | -8.615850e-47 |
| Msa0065950 | Msa0118780 | 0.804238 | 2.377595e-49 | -8.615850e-47 |
| Msa0070880 | Msa0118780 | 0.858490 | 7.951243e-63 | -8.615850e-47 |
| Msa0070920 | Msa0118780 | 0.811581 | 6.517621e-51 | -8.615850e-47 |
| Msa0100740 | Msa0118780 | 0.824139 | 9.487731e-54 | -8.615850e-47 |
| Msa0118780 | Msa0118810 | 0.826290 | 2.941562e-54 | -8.615850e-47 |
| Msa0118780 | Msa0138630 | 0.815697 | 8.096370e-52 | -8.615850e-47 |
| Msa0118780 | Msa0140110 | 0.800049 | 1.729241e-48 | -8.615850e-47 |
| Msa0118780 | Msa0140650 | 0.805893 | 1.071572e-49 | -8.615850e-47 |
| Msa0118780 | Msa0145730 | 0.814677 | 1.363668e-51 | -8.615850e-47 |
| Msa0118780 | Msa0159170 | 0.809776 | 1.600710e-50 | -8.615850e-47 |
| Msa0118780 | Msa0162100 | 0.912502 | 1.810785e-83 | -8.615850e-47 |
| Msa0118780 | Msa0162130 | 0.873026 | 2.021611e-67 | -8.615850e-47 |
| Msa0118780 | Msa0162220 | 0.869081 | 4.043812e-66 | -8.615850e-47 |
| Msa0118780 | Msa0162230 | 0.842483 | 2.514995e-58 | -8.615850e-47 |
| Msa0118780 | Msa0162240 | 0.842472 | 2.532376e-58 | -8.615850e-47 |
| Msa0118780 | Msa0172970 | 0.812286 | 4.575549e-51 | -8.615850e-47 |
| Msa0118780 | Msa0189520 | 0.839801 | 1.275008e-57 | -8.615850e-47 |
| Msa0118780 | Msa0190120 | 0.811584 | 6.507981e-51 | -8.615850e-47 |
| Msa0118780 | Msa0194480 | 0.831355 | 1.749539e-55 | -8.615850e-47 |
| Msa0118780 | Msa0220720 | 0.809961 | 1.460854e-50 | -8.615850e-47 |
| Msa0118780 | Msa0236270 | 0.811242 | 7.721640e-51 | -8.615850e-47 |
| Msa0118780 | Msa0256330 | 0.807523 | 4.849068e-50 | -8.615850e-47 |
| Msa0118780 | Msa0261550 | 0.803975 | 2.696318e-49 | -8.615850e-47 |
| Msa0118780 | Msa0262310 | 0.802545 | 5.332210e-49 | -8.615850e-47 |
| Msa0118780 | Msa0271360 | 0.823746 | 1.172981e-53 | -8.615850e-47 |
| Msa0118780 | Msa0271890 | 0.816968 | 4.206738e-52 | -8.615850e-47 |
| Msa0118780 | Msa0295330 | 0.810405 | 1.171472e-50 | -8.615850e-47 |
| Msa0118780 | Msa0298700 | 0.806994 | 6.277667e-50 | -8.615850e-47 |
| Msa0118780 | Msa0299870 | 0.801491 | 8.781077e-49 | -8.615850e-47 |
| Msa0118780 | Msa0309880 | 0.808541 | 2.943846e-50 | -8.615850e-47 |
| Msa0118780 | Msa0310860 | 0.815941 | 7.141154e-52 | -8.615850e-47 |
| Msa0118780 | Msa0337240 | 0.826796 | 2.228179e-54 | -8.615850e-47 |
| Msa0118780 | Msa0337650 | 0.804583 | 2.014427e-49 | -8.615850e-47 |
| Msa0118780 | Msa0366890 | 0.801867 | 7.352491e-49 | -8.615850e-47 |
| Msa0118780 | Msa0369220 | 0.801471 | 8.863305e-49 | -8.615850e-47 |
| Msa0118780 | Msa0377900 | -0.803873 | 2.831421e-49 | -8.615850e-47 |
| Msa0118780 | Msa0402790 | 0.812972 | 3.239372e-51 | -8.615850e-47 |
| Msa0118780 | Msa0423450 | -0.805023 | 1.630368e-49 | -8.615850e-47 |
| Msa0118780 | Msa0442190 | 0.816084 | 6.634728e-52 | -8.615850e-47 |
| Msa0118780 | Msa0471590 | 0.805829 | 1.105245e-49 | -8.615850e-47 |
| Msa0118780 | Msa0473830 | -0.807604 | 4.661816e-50 | -8.615850e-47 |
| Msa0118780 | Msa0493410 | 0.804394 | 2.206430e-49 | -8.615850e-47 |
| Msa0118780 | Msa0504020 | 0.824128 | 9.547511e-54 | -8.615850e-47 |
| Msa0118780 | Msa0508590 | 0.800367 | 1.490020e-48 | -8.615850e-47 |
| Msa0118780 | Msa0518070 | -0.808044 | 3.757483e-50 | -8.615850e-47 |
| Msa0118780 | Msa0520790 | 0.812418 | 4.282859e-51 | -8.615850e-47 |
| Msa0118780 | Msa0534900 | 0.838876 | 2.216469e-57 | -8.615850e-47 |
| Msa0118780 | Msa0553220 | -0.812935 | 3.300227e-51 | -8.615850e-47 |
| Msa0118780 | Msa0557480 | 0.832480 | 9.230843e-56 | -8.615850e-47 |
| Msa0118780 | Msa0568910 | 0.809530 | 1.808337e-50 | -8.615850e-47 |
| Msa0118780 | Msa0588260 | 0.810771 | 9.768515e-51 | -8.615850e-47 |
| Msa0118780 | Msa0589190 | 0.805644 | 1.208276e-49 | -8.615850e-47 |
| Msa0118780 | Msa0620890 | 0.828138 | 1.062072e-54 | -8.615850e-47 |
| Msa0118780 | Msa0623860 | 0.812558 | 3.990234e-51 | -8.615850e-47 |
| Msa0118780 | Msa0631350 | 0.819959 | 8.828561e-53 | -8.615850e-47 |
| Msa0118780 | Msa0650190 | 0.808816 | 2.571765e-50 | -8.615850e-47 |
| Msa0118780 | Msa0722020 | 0.815930 | 7.182158e-52 | -8.615850e-47 |
| Msa0118780 | Msa0769980 | 0.853697 | 2.012798e-61 | -8.615850e-47 |
| Msa0118780 | Msa0771720 | 0.802773 | 4.785634e-49 | -8.615850e-47 |
| Msa0118780 | Msa0784860 | 0.852720 | 3.836186e-61 | -8.615850e-47 |
| Msa0118780 | Msa0801110 | 0.836905 | 7.113823e-57 | -8.615850e-47 |
| Msa0118780 | Msa0808080 | 0.809116 | 2.218732e-50 | -8.615850e-47 |
| Msa0118780 | Msa0813720 | 0.805121 | 1.555073e-49 | -8.615850e-47 |
| Msa0118780 | Msa0817730 | 0.824734 | 6.874333e-54 | -8.615850e-47 |
| Msa0118780 | Msa0849030 | 0.820928 | 5.292499e-53 | -8.615850e-47 |
| Msa0118780 | Msa0858180 | 0.831678 | 1.456602e-55 | -8.615850e-47 |
| Msa0118780 | Msa0887250 | 0.806534 | 7.850352e-50 | -8.615850e-47 |
| Msa0118780 | Msa0894950 | 0.809014 | 2.333070e-50 | -8.615850e-47 |
| Msa0118780 | Msa0899240 | -0.814233 | 1.709778e-51 | -8.615850e-47 |
| Msa0118780 | Msa0899640 | 0.812104 | 5.014308e-51 | -8.615850e-47 |
| Msa0118780 | Msa0926460 | 0.807042 | 6.131658e-50 | -8.615850e-47 |
| Msa0118780 | Msa0927260 | 0.822215 | 2.668982e-53 | -8.615850e-47 |
| Msa0118780 | Msa0965860 | 0.806493 | 8.007109e-50 | -8.615850e-47 |
| Msa0118780 | Msa0974810 | 0.804250 | 2.363497e-49 | -8.615850e-47 |
| Msa0118780 | Msa0999050 | -0.817183 | 3.762861e-52 | -8.615850e-47 |
| Msa0118780 | Msa1012830 | 0.800279 | 1.552897e-48 | -8.615850e-47 |
| Msa0118780 | Msa1030620 | 0.804000 | 2.665067e-49 | -8.615850e-47 |
| Msa0118780 | Msa1037420 | 0.826213 | 3.068410e-54 | -8.615850e-47 |
| Msa0118780 | Msa1051200 | 0.808407 | 3.145022e-50 | -8.615850e-47 |
| Msa0118780 | Msa1081930 | 0.805487 | 1.303486e-49 | -8.615850e-47 |
| Msa0118780 | Msa1123810 | 0.803494 | 3.394453e-49 | -8.615850e-47 |
| Msa0118780 | Msa1137700 | 0.810529 | 1.101819e-50 | -8.615850e-47 |
| Msa0118780 | Msa1237940 | 0.803532 | 3.333752e-49 | -8.615850e-47 |
| Msa0118780 | Msa1254730 | 0.811347 | 7.327475e-51 | -8.615850e-47 |
| Msa0118780 | Msa1260130 | 0.811316 | 7.439765e-51 | -8.615850e-47 |
| Msa0118780 | Msa1296830 | 0.818864 | 1.568935e-52 | -8.615850e-47 |
| Msa0118780 | Msa1300050 | 0.801320 | 9.519979e-49 | -8.615850e-47 |
| Msa0118780 | Msa1361520 | 0.805574 | 1.250324e-49 | -8.615850e-47 |
| Msa0118780 | Msa1385770 | 0.826210 | 3.074052e-54 | -8.615850e-47 |
| Msa0118780 | Msa1409240 | 0.825012 | 5.912058e-54 | -8.615850e-47 |
| Msa0118780 | Msa1434140 | 0.809066 | 2.273568e-50 | -8.615850e-47 |
| Msa0118780 | Msa1444310 | 0.804275 | 2.336134e-49 | -8.615850e-47 |
| Msa0118780 | Msa1451550 | 0.807898 | 4.035671e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118780 | MtrunA17_Chr1g0176311 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 1.51e-131 | 366 |
| Msa0118780 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 21 | 191 | 1 | 177 | 2.23e-98 | 282 |
| Msa0118780 | MtrunA17_Chr1g0192651 | 40.462 | 173 | 86 | 4 | 13 | 185 | 3 | 158 | 1.44e-34 | 120 |
| Msa0118780 | MtrunA17_Chr1g0195661 | 36.158 | 177 | 101 | 3 | 13 | 188 | 2 | 167 | 9.56e-32 | 112 |
| Msa0118780 | MtrunA17_Chr1g0194801 | 35.088 | 171 | 94 | 5 | 17 | 184 | 2 | 158 | 2.33e-30 | 108 |
| Msa0118780 | MtrunA17_Chr5g0427291 | 35.976 | 164 | 96 | 4 | 25 | 182 | 10 | 170 | 9.14e-28 | 102 |
| Msa0118780 | MtrunA17_Chr7g0269301 | 32.738 | 168 | 100 | 3 | 22 | 188 | 7 | 162 | 1.53e-22 | 89.0 |
| Msa0118780 | MtrunA17_Chr2g0294421 | 31.737 | 167 | 103 | 3 | 24 | 188 | 6 | 163 | 4.62e-19 | 80.1 |
| Msa0118780 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 122 | 182 | 5 | 65 | 5.52e-19 | 77.0 |
| Msa0118780 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 24 | 182 | 6 | 157 | 1.24e-18 | 79.0 |
| Msa0118780 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 25 | 191 | 7 | 166 | 6.95e-18 | 77.0 |
| Msa0118780 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 24 | 188 | 26 | 187 | 1.62e-17 | 77.4 |
| Msa0118780 | MtrunA17_Chr6g0450171 | 31.959 | 97 | 66 | 0 | 86 | 182 | 66 | 162 | 2.41e-16 | 73.2 |
| Msa0118780 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 27 | 182 | 9 | 157 | 2.36e-14 | 67.4 |
| Msa0118780 | MtrunA17_Chr7g0240701 | 28.485 | 165 | 99 | 3 | 24 | 182 | 6 | 157 | 6.86e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118780 | AT3G11930.1 | 54.545 | 176 | 78 | 2 | 15 | 189 | 25 | 199 | 1.57e-68 | 207 |
| Msa0118780 | AT3G11930.2 | 54.802 | 177 | 77 | 3 | 15 | 189 | 25 | 200 | 2.90e-67 | 204 |
| Msa0118780 | AT3G11930.4 | 54.494 | 178 | 77 | 3 | 15 | 189 | 25 | 201 | 3.64e-67 | 204 |
| Msa0118780 | AT3G11930.3 | 47.783 | 203 | 77 | 4 | 15 | 189 | 25 | 226 | 8.29e-61 | 189 |
| Msa0118780 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 25 | 186 | 32 | 192 | 9.76e-59 | 183 |
| Msa0118780 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 25 | 186 | 32 | 185 | 7.03e-55 | 173 |
| Msa0118780 | AT1G09740.2 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 1.19e-30 | 110 |
| Msa0118780 | AT1G09740.1 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 1.19e-30 | 110 |
| Msa0118780 | AT3G62550.1 | 35.404 | 161 | 90 | 4 | 24 | 182 | 8 | 156 | 6.01e-26 | 98.2 |
| Msa0118780 | AT1G68300.1 | 32.738 | 168 | 101 | 3 | 15 | 182 | 2 | 157 | 2.65e-25 | 96.3 |
| Msa0118780 | AT2G47710.1 | 32.121 | 165 | 99 | 3 | 22 | 185 | 7 | 159 | 2.82e-25 | 96.3 |
| Msa0118780 | AT3G17020.1 | 32.298 | 161 | 99 | 2 | 24 | 182 | 8 | 160 | 5.88e-18 | 77.4 |
| Msa0118780 | AT3G01520.1 | 25.595 | 168 | 104 | 3 | 24 | 182 | 7 | 162 | 2.91e-17 | 75.9 |
| Msa0118780 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 25 | 182 | 7 | 157 | 1.62e-16 | 73.6 |
| Msa0118780 | AT5G14680.1 | 26.190 | 168 | 103 | 3 | 24 | 182 | 7 | 162 | 5.27e-16 | 72.4 |
| Msa0118780 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 27 | 185 | 9 | 160 | 1.44e-12 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCATATAATTGTGGAAAA+TGG | 0.167677 | 1_3:+41941087 | None:intergenic |
| CACAATTATATGCACCCTAT+TGG | 0.247878 | 1_3:-41941079 | Msa0118780:CDS |
| CCACCACCACCTGGTCCAAT+AGG | 0.318407 | 1_3:+41941064 | None:intergenic |
| ATTTGGTGTAGAGCATTTCT+TGG | 0.348715 | 1_3:-41939420 | Msa0118780:intron |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_3:-41939621 | Msa0118780:CDS |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1_3:-41941307 | None:intergenic |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_3:-41939636 | Msa0118780:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1_3:-41940752 | Msa0118780:CDS |
| TGCATATAATTGTGGAAAAT+GGG | 0.413967 | 1_3:+41941088 | None:intergenic |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_3:+41939671 | None:intergenic |
| GTGGCCTGGGCACGCTCAAA+AGG | 0.436301 | 1_3:-41939607 | Msa0118780:intron |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_3:-41939620 | Msa0118780:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_3:-41939672 | Msa0118780:CDS |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_3:+41940713 | None:intergenic |
| CACCACCACCTGGTCCAATA+GGG | 0.474544 | 1_3:+41941065 | None:intergenic |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_3:-41939698 | Msa0118780:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1_3:+41940748 | None:intergenic |
| CCTATTGGACCAGGTGGTGG+TGG | 0.487554 | 1_3:-41941064 | Msa0118780:intron |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_3:-41941137 | Msa0118780:CDS |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_3:-41940674 | Msa0118780:intron |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_3:+41939672 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_3:+41941144 | None:intergenic |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_3:-41940701 | Msa0118780:CDS |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1_3:-41941284 | Msa0118780:CDS |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_3:+41941173 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1_3:-41941248 | Msa0118780:CDS |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_3:-41941131 | Msa0118780:CDS |
| GGTGGCTTCACAATGAGAAT+AGG | 0.526593 | 1_3:+41939360 | None:intergenic |
| CACCCTATTGGACCAGGTGG+TGG | 0.530142 | 1_3:-41941067 | Msa0118780:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_3:-41940702 | Msa0118780:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_3:-41941161 | Msa0118780:CDS |
| CAATAGGGTGCATATAATTG+TGG | 0.539598 | 1_3:+41941080 | None:intergenic |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_3:-41939626 | Msa0118780:CDS |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_3:-41940683 | Msa0118780:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_3:-41939635 | Msa0118780:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_3:-41941157 | Msa0118780:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1_3:-41941285 | Msa0118780:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_3:-41941136 | Msa0118780:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1_3:-41941261 | Msa0118780:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_3:+41941174 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_3:-41941239 | Msa0118780:CDS |
| TATTCTCATTGTGAAGCCAC+CGG | 0.610544 | 1_3:-41939358 | Msa0118780:CDS |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1_3:-41941283 | Msa0118780:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_3:-41939688 | Msa0118780:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1_3:-41940736 | Msa0118780:CDS |
| AGATACGAACCACCACCACC+TGG | 0.637770 | 1_3:+41941055 | None:intergenic |
| TATATGCACCCTATTGGACC+AGG | 0.642137 | 1_3:-41941073 | Msa0118780:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_3:-41941242 | Msa0118780:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_3:-41941220 | Msa0118780:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_3:-41939687 | Msa0118780:CDS |
| ATGCACCCTATTGGACCAGG+TGG | 0.672679 | 1_3:-41941070 | Msa0118780:CDS |
| TCTCATTGTGAAGCCACCGG+AGG | 0.677993 | 1_3:-41939355 | Msa0118780:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1_3:-41941304 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1_3:-41941280 | Msa0118780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTAAATTAAATTAAA+TGG | - | chr1_3:41940107-41940126 | Msa0118780:intron | 0.0% |
| !! | AAATATATATAAAAAAAAAA+GGG | + | chr1_3:41941197-41941216 | None:intergenic | 0.0% |
| !! | TTAAATTAAATTAAATTAAA+TGG | - | chr1_3:41940107-41940126 | Msa0118780:intron | 0.0% |
| !! | AAATATATATAAAAAAAAAA+GGG | + | chr1_3:41941197-41941216 | None:intergenic | 0.0% |
| !! | TAAAAAAAGCAAAAAAATTT+GGG | - | chr1_3:41940743-41940762 | Msa0118780:CDS | 10.0% |
| !! | AAATGATAAAAATTAAAAGA+TGG | + | chr1_3:41940821-41940840 | None:intergenic | 10.0% |
| !! | TAAAAAAAGCAAAAAAATTT+GGG | - | chr1_3:41940743-41940762 | Msa0118780:CDS | 10.0% |
| !! | AAATGATAAAAATTAAAAGA+TGG | + | chr1_3:41940821-41940840 | None:intergenic | 10.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1_3:41940215-41940234 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1_3:41940461-41940480 | None:intergenic | 15.0% |
| !!! | TCAATTTTGAAAAACTTAAT+GGG | + | chr1_3:41940509-41940528 | None:intergenic | 15.0% |
| !!! | TTCAATTTTGAAAAACTTAA+TGG | + | chr1_3:41940510-41940529 | None:intergenic | 15.0% |
| !! | ATGAATCAATTAATTAGAAA+AGG | + | chr1_3:41940611-41940630 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_3:41940668-41940687 | Msa0118780:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_3:41940669-41940688 | Msa0118780:intron | 15.0% |
| !! | GTAAAAAAAGCAAAAAAATT+TGG | - | chr1_3:41940742-41940761 | Msa0118780:CDS | 15.0% |
| !!! | TTAATTTTTATCATTTGTGT+AGG | - | chr1_3:41940825-41940844 | Msa0118780:intron | 15.0% |
| !!! | TTTAAATTTTGGTTTCATTT+TGG | - | chr1_3:41941161-41941180 | Msa0118780:CDS | 15.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1_3:41940215-41940234 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1_3:41940461-41940480 | None:intergenic | 15.0% |
| !!! | TCAATTTTGAAAAACTTAAT+GGG | + | chr1_3:41940509-41940528 | None:intergenic | 15.0% |
| !!! | TTCAATTTTGAAAAACTTAA+TGG | + | chr1_3:41940510-41940529 | None:intergenic | 15.0% |
| !! | ATGAATCAATTAATTAGAAA+AGG | + | chr1_3:41940611-41940630 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_3:41940668-41940687 | Msa0118780:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_3:41940669-41940688 | Msa0118780:intron | 15.0% |
| !! | GTAAAAAAAGCAAAAAAATT+TGG | - | chr1_3:41940742-41940761 | Msa0118780:CDS | 15.0% |
| !!! | TTAATTTTTATCATTTGTGT+AGG | - | chr1_3:41940825-41940844 | Msa0118780:intron | 15.0% |
| !!! | TTTAAATTTTGGTTTCATTT+TGG | - | chr1_3:41941161-41941180 | Msa0118780:CDS | 15.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_3:41939622-41939641 | None:intergenic | 20.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1_3:41940216-41940235 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTGACAACTAAT+AGG | + | chr1_3:41940408-41940427 | None:intergenic | 20.0% |
| !! | TTTGTTGGAATTATTTGATA+GGG | + | chr1_3:41940438-41940457 | None:intergenic | 20.0% |
| !!! | AAGGTATAATTTGTGTTTTA+GGG | + | chr1_3:41940569-41940588 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_3:41940670-41940689 | Msa0118780:intron | 20.0% |
| !! | GTACTTCAATATAGAAAATA+TGG | + | chr1_3:41941081-41941100 | None:intergenic | 20.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_3:41939622-41939641 | None:intergenic | 20.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1_3:41940216-41940235 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTGACAACTAAT+AGG | + | chr1_3:41940408-41940427 | None:intergenic | 20.0% |
| !! | TTTGTTGGAATTATTTGATA+GGG | + | chr1_3:41940438-41940457 | None:intergenic | 20.0% |
| !!! | AAGGTATAATTTGTGTTTTA+GGG | + | chr1_3:41940569-41940588 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_3:41940670-41940689 | Msa0118780:intron | 20.0% |
| !! | GTACTTCAATATAGAAAATA+TGG | + | chr1_3:41941081-41941100 | None:intergenic | 20.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_3:41939462-41939481 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_3:41939463-41939482 | None:intergenic | 25.0% |
| ! | TGCATATAATTGTGGAAAAT+GGG | + | chr1_3:41939548-41939567 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_3:41939614-41939633 | None:intergenic | 25.0% |
| ! | AAATATCAAAATTGCTTGGT+CGG | + | chr1_3:41939710-41939729 | None:intergenic | 25.0% |
| ! | GCAAAAATATCAAAATTGCT+TGG | + | chr1_3:41939714-41939733 | None:intergenic | 25.0% |
| !! | TTTTTATTGTATCTGAGTAG+AGG | + | chr1_3:41940009-41940028 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAA+AGG | - | chr1_3:41940172-41940191 | Msa0118780:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCAAA+GGG | - | chr1_3:41940173-41940192 | Msa0118780:intron | 25.0% |
| ! | AATTCGCATATTCAATTCAT+TGG | + | chr1_3:41940284-41940303 | None:intergenic | 25.0% |
| ! | GGTGTAATTGATGAAAATAA+GGG | + | chr1_3:41940314-41940333 | None:intergenic | 25.0% |
| ! | GAATTATTTGATAGGGTATA+GGG | + | chr1_3:41940431-41940450 | None:intergenic | 25.0% |
| !! | GTTTGTTGGAATTATTTGAT+AGG | + | chr1_3:41940439-41940458 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAATGGTTTGT+TGG | + | chr1_3:41940453-41940472 | None:intergenic | 25.0% |
| ! | TTTGAAAAACTTAATGGGAT+GGG | + | chr1_3:41940504-41940523 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAACTTAATGGGA+TGG | + | chr1_3:41940505-41940524 | None:intergenic | 25.0% |
| !!! | ACTATTTTTCTAGTTGCATT+AGG | - | chr1_3:41940538-41940557 | Msa0118780:intron | 25.0% |
| !!! | TATAATTTGTGTTTTAGGGA+GGG | + | chr1_3:41940565-41940584 | None:intergenic | 25.0% |
| !!! | CAAGGTATAATTTGTGTTTT+AGG | + | chr1_3:41940570-41940589 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1_3:41940588-41940607 | None:intergenic | 25.0% |
| !!! | AACACTCATTTTAAAACTGA+GGG | + | chr1_3:41941120-41941139 | None:intergenic | 25.0% |
| !!! | TAACACTCATTTTAAAACTG+AGG | + | chr1_3:41941121-41941140 | None:intergenic | 25.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_3:41939462-41939481 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_3:41939463-41939482 | None:intergenic | 25.0% |
| ! | TGCATATAATTGTGGAAAAT+GGG | + | chr1_3:41939548-41939567 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_3:41939614-41939633 | None:intergenic | 25.0% |
| ! | AAATATCAAAATTGCTTGGT+CGG | + | chr1_3:41939710-41939729 | None:intergenic | 25.0% |
| ! | GCAAAAATATCAAAATTGCT+TGG | + | chr1_3:41939714-41939733 | None:intergenic | 25.0% |
| !! | TTTTTATTGTATCTGAGTAG+AGG | + | chr1_3:41940009-41940028 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAA+AGG | - | chr1_3:41940172-41940191 | Msa0118780:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCAAA+GGG | - | chr1_3:41940173-41940192 | Msa0118780:intron | 25.0% |
| ! | AATTCGCATATTCAATTCAT+TGG | + | chr1_3:41940284-41940303 | None:intergenic | 25.0% |
| ! | GGTGTAATTGATGAAAATAA+GGG | + | chr1_3:41940314-41940333 | None:intergenic | 25.0% |
| ! | GAATTATTTGATAGGGTATA+GGG | + | chr1_3:41940431-41940450 | None:intergenic | 25.0% |
| !! | GTTTGTTGGAATTATTTGAT+AGG | + | chr1_3:41940439-41940458 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAATGGTTTGT+TGG | + | chr1_3:41940453-41940472 | None:intergenic | 25.0% |
| ! | TTTGAAAAACTTAATGGGAT+GGG | + | chr1_3:41940504-41940523 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAACTTAATGGGA+TGG | + | chr1_3:41940505-41940524 | None:intergenic | 25.0% |
| !!! | ACTATTTTTCTAGTTGCATT+AGG | - | chr1_3:41940538-41940557 | Msa0118780:intron | 25.0% |
| !!! | TATAATTTGTGTTTTAGGGA+GGG | + | chr1_3:41940565-41940584 | None:intergenic | 25.0% |
| !!! | CAAGGTATAATTTGTGTTTT+AGG | + | chr1_3:41940570-41940589 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1_3:41940588-41940607 | None:intergenic | 25.0% |
| !!! | AACACTCATTTTAAAACTGA+GGG | + | chr1_3:41941120-41941139 | None:intergenic | 25.0% |
| !!! | TAACACTCATTTTAAAACTG+AGG | + | chr1_3:41941121-41941140 | None:intergenic | 25.0% |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | - | chr1_3:41939436-41939455 | Msa0118780:intron | 30.0% |
| GTGCATATAATTGTGGAAAA+TGG | + | chr1_3:41939549-41939568 | None:intergenic | 30.0% | |
| GTTGAAGTGATAAAATAGTG+AGG | + | chr1_3:41939855-41939874 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_3:41940121-41940140 | Msa0118780:intron | 30.0% | |
| ! | CAAGTGGTTAATATGTTTTG+AGG | - | chr1_3:41940137-41940156 | Msa0118780:intron | 30.0% |
| GGGTGTAATTGATGAAAATA+AGG | + | chr1_3:41940315-41940334 | None:intergenic | 30.0% | |
| AGAAAAACAAAGCGTGTAAT+GGG | + | chr1_3:41940335-41940354 | None:intergenic | 30.0% | |
| AAGAAAAACAAAGCGTGTAA+TGG | + | chr1_3:41940336-41940355 | None:intergenic | 30.0% | |
| !!! | ATTACACGCTTTGTTTTTCT+TGG | - | chr1_3:41940335-41940354 | Msa0118780:intron | 30.0% |
| AATGGGTAATTGATCTACAA+AGG | - | chr1_3:41940369-41940388 | Msa0118780:intron | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1_3:41940370-41940389 | Msa0118780:intron | 30.0% | |
| GGAATTATTTGATAGGGTAT+AGG | + | chr1_3:41940432-41940451 | None:intergenic | 30.0% | |
| !!! | GTATAATTTGTGTTTTAGGG+AGG | + | chr1_3:41940566-41940585 | None:intergenic | 30.0% |
| ! | TAAAACATTTTCGCCAGATT+TGG | + | chr1_3:41940867-41940886 | None:intergenic | 30.0% |
| ! | ATGTTTTATCTAGCCAAATC+TGG | - | chr1_3:41940879-41940898 | Msa0118780:intron | 30.0% |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1_3:41940895-41940914 | None:intergenic | 30.0% |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1_3:41940898-41940917 | Msa0118780:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1_3:41940907-41940926 | Msa0118780:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_3:41940998-41941017 | Msa0118780:intron | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_3:41941167-41941186 | Msa0118780:CDS | 30.0% |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | - | chr1_3:41939436-41939455 | Msa0118780:intron | 30.0% |
| GTGCATATAATTGTGGAAAA+TGG | + | chr1_3:41939549-41939568 | None:intergenic | 30.0% | |
| GTTGAAGTGATAAAATAGTG+AGG | + | chr1_3:41939855-41939874 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_3:41940121-41940140 | Msa0118780:intron | 30.0% | |
| ! | CAAGTGGTTAATATGTTTTG+AGG | - | chr1_3:41940137-41940156 | Msa0118780:intron | 30.0% |
| GGGTGTAATTGATGAAAATA+AGG | + | chr1_3:41940315-41940334 | None:intergenic | 30.0% | |
| AGAAAAACAAAGCGTGTAAT+GGG | + | chr1_3:41940335-41940354 | None:intergenic | 30.0% | |
| AAGAAAAACAAAGCGTGTAA+TGG | + | chr1_3:41940336-41940355 | None:intergenic | 30.0% | |
| !!! | ATTACACGCTTTGTTTTTCT+TGG | - | chr1_3:41940335-41940354 | Msa0118780:intron | 30.0% |
| AATGGGTAATTGATCTACAA+AGG | - | chr1_3:41940369-41940388 | Msa0118780:intron | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1_3:41940370-41940389 | Msa0118780:intron | 30.0% | |
| GGAATTATTTGATAGGGTAT+AGG | + | chr1_3:41940432-41940451 | None:intergenic | 30.0% | |
| !!! | GTATAATTTGTGTTTTAGGG+AGG | + | chr1_3:41940566-41940585 | None:intergenic | 30.0% |
| ! | TAAAACATTTTCGCCAGATT+TGG | + | chr1_3:41940867-41940886 | None:intergenic | 30.0% |
| ! | ATGTTTTATCTAGCCAAATC+TGG | - | chr1_3:41940879-41940898 | Msa0118780:intron | 30.0% |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1_3:41940895-41940914 | None:intergenic | 30.0% |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1_3:41940898-41940917 | Msa0118780:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1_3:41940907-41940926 | Msa0118780:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_3:41940998-41941017 | Msa0118780:intron | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_3:41941167-41941186 | Msa0118780:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_3:41939385-41939404 | Msa0118780:CDS | 35.0% | |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | - | chr1_3:41939435-41939454 | Msa0118780:intron | 35.0% |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_3:41939496-41939515 | Msa0118780:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_3:41939497-41939516 | Msa0118780:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_3:41939502-41939521 | Msa0118780:intron | 35.0% | |
| CAATAGGGTGCATATAATTG+TGG | + | chr1_3:41939556-41939575 | None:intergenic | 35.0% | |
| CACAATTATATGCACCCTAT+TGG | - | chr1_3:41939554-41939573 | Msa0118780:intron | 35.0% | |
| ! | GTGCTCAAGAAATTTGAGTT+TGG | - | chr1_3:41940159-41940178 | Msa0118780:intron | 35.0% |
| TTCTTGGTCAAAGCAGATAA+TGG | - | chr1_3:41940351-41940370 | Msa0118780:intron | 35.0% | |
| TCTTGGTCAAAGCAGATAAT+GGG | - | chr1_3:41940352-41940371 | Msa0118780:intron | 35.0% | |
| AAAAACTTAATGGGATGGGT+GGG | + | chr1_3:41940500-41940519 | None:intergenic | 35.0% | |
| TCTCATATATGTCTTGCCTT+GGG | + | chr1_3:41940655-41940674 | None:intergenic | 35.0% | |
| TTCTCATATATGTCTTGCCT+TGG | + | chr1_3:41940656-41940675 | None:intergenic | 35.0% | |
| CCAGATTTGGCTAGATAATT+TGG | + | chr1_3:41940854-41940873 | None:intergenic | 35.0% | |
| CCAAATTATCTAGCCAAATC+TGG | - | chr1_3:41940851-41940870 | Msa0118780:intron | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_3:41940935-41940954 | Msa0118780:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_3:41940997-41941016 | Msa0118780:intron | 35.0% |
| !! | ATTTGGTGTAGAGCATTTCT+TGG | - | chr1_3:41941213-41941232 | Msa0118780:CDS | 35.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_3:41939385-41939404 | Msa0118780:CDS | 35.0% | |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | - | chr1_3:41939435-41939454 | Msa0118780:intron | 35.0% |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_3:41939496-41939515 | Msa0118780:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_3:41939497-41939516 | Msa0118780:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_3:41939502-41939521 | Msa0118780:intron | 35.0% | |
| CAATAGGGTGCATATAATTG+TGG | + | chr1_3:41939556-41939575 | None:intergenic | 35.0% | |
| CACAATTATATGCACCCTAT+TGG | - | chr1_3:41939554-41939573 | Msa0118780:intron | 35.0% | |
| ! | GTGCTCAAGAAATTTGAGTT+TGG | - | chr1_3:41940159-41940178 | Msa0118780:intron | 35.0% |
| TTCTTGGTCAAAGCAGATAA+TGG | - | chr1_3:41940351-41940370 | Msa0118780:intron | 35.0% | |
| TCTTGGTCAAAGCAGATAAT+GGG | - | chr1_3:41940352-41940371 | Msa0118780:intron | 35.0% | |
| AAAAACTTAATGGGATGGGT+GGG | + | chr1_3:41940500-41940519 | None:intergenic | 35.0% | |
| TCTCATATATGTCTTGCCTT+GGG | + | chr1_3:41940655-41940674 | None:intergenic | 35.0% | |
| TTCTCATATATGTCTTGCCT+TGG | + | chr1_3:41940656-41940675 | None:intergenic | 35.0% | |
| CCAGATTTGGCTAGATAATT+TGG | + | chr1_3:41940854-41940873 | None:intergenic | 35.0% | |
| CCAAATTATCTAGCCAAATC+TGG | - | chr1_3:41940851-41940870 | Msa0118780:intron | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_3:41940935-41940954 | Msa0118780:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_3:41940997-41941016 | Msa0118780:intron | 35.0% |
| !! | ATTTGGTGTAGAGCATTTCT+TGG | - | chr1_3:41941213-41941232 | Msa0118780:CDS | 35.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_3:41939349-41939368 | Msa0118780:CDS | 40.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_3:41939391-41939410 | Msa0118780:CDS | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_3:41939472-41939491 | Msa0118780:intron | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_3:41939476-41939495 | Msa0118780:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_3:41939492-41939511 | None:intergenic | 40.0% | |
| ! | GCACGTTGAATTGAGACTTT+TGG | - | chr1_3:41939732-41939751 | Msa0118780:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_3:41939875-41939894 | Msa0118780:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_3:41939897-41939916 | Msa0118780:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_3:41939923-41939942 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_3:41939931-41939950 | Msa0118780:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_3:41939932-41939951 | Msa0118780:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_3:41939995-41940014 | None:intergenic | 40.0% | |
| !! | GGTGGGTGTGATTTTGAAAA+GGG | + | chr1_3:41940483-41940502 | None:intergenic | 40.0% |
| GAAAAACTTAATGGGATGGG+TGG | + | chr1_3:41940501-41940520 | None:intergenic | 40.0% | |
| ATATATGTCTTGCCTTGGGT+GGG | + | chr1_3:41940651-41940670 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_3:41940945-41940964 | Msa0118780:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_3:41940946-41940965 | Msa0118780:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_3:41940964-41940983 | None:intergenic | 40.0% | |
| TATTCTCATTGTGAAGCCAC+CGG | - | chr1_3:41941275-41941294 | Msa0118780:CDS | 40.0% | |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_3:41939349-41939368 | Msa0118780:CDS | 40.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_3:41939391-41939410 | Msa0118780:CDS | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_3:41939472-41939491 | Msa0118780:intron | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_3:41939476-41939495 | Msa0118780:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_3:41939492-41939511 | None:intergenic | 40.0% | |
| ! | GCACGTTGAATTGAGACTTT+TGG | - | chr1_3:41939732-41939751 | Msa0118780:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_3:41939875-41939894 | Msa0118780:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_3:41939897-41939916 | Msa0118780:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_3:41939923-41939942 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_3:41939931-41939950 | Msa0118780:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_3:41939932-41939951 | Msa0118780:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_3:41939995-41940014 | None:intergenic | 40.0% | |
| !! | GGTGGGTGTGATTTTGAAAA+GGG | + | chr1_3:41940483-41940502 | None:intergenic | 40.0% |
| GAAAAACTTAATGGGATGGG+TGG | + | chr1_3:41940501-41940520 | None:intergenic | 40.0% | |
| ATATATGTCTTGCCTTGGGT+GGG | + | chr1_3:41940651-41940670 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_3:41940945-41940964 | Msa0118780:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_3:41940946-41940965 | Msa0118780:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_3:41940964-41940983 | None:intergenic | 40.0% | |
| TATTCTCATTGTGAAGCCAC+CGG | - | chr1_3:41941275-41941294 | Msa0118780:CDS | 40.0% | |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_3:41939348-41939367 | Msa0118780:CDS | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_3:41939350-41939369 | Msa0118780:CDS | 45.0% |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1_3:41939372-41939391 | Msa0118780:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_3:41939394-41939413 | Msa0118780:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_3:41939413-41939432 | Msa0118780:intron | 45.0% | |
| TATATGCACCCTATTGGACC+AGG | - | chr1_3:41939560-41939579 | Msa0118780:intron | 45.0% | |
| ATGACCACGACGCAAATAAG+TGG | - | chr1_3:41939652-41939671 | Msa0118780:CDS | 45.0% | |
| GCAAATAAGTGGAGGAGTCA+GGG | - | chr1_3:41939663-41939682 | Msa0118780:CDS | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_3:41939881-41939900 | Msa0118780:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_3:41939959-41939978 | Msa0118780:intron | 45.0% | |
| !! | GGGTGGGTGTGATTTTGAAA+AGG | + | chr1_3:41940484-41940503 | None:intergenic | 45.0% |
| ! | GGTGGGTTCACTTCTTAAGT+GGG | + | chr1_3:41940634-41940653 | None:intergenic | 45.0% |
| TTAAGAAGTGAACCCACCCA+AGG | - | chr1_3:41940636-41940655 | Msa0118780:intron | 45.0% | |
| CATATATGTCTTGCCTTGGG+TGG | + | chr1_3:41940652-41940671 | None:intergenic | 45.0% | |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_3:41940961-41940980 | Msa0118780:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_3:41940965-41940984 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_3:41941276-41941295 | None:intergenic | 45.0% | |
| !! | TGCTTTTTATGGTGCTCCTC+CGG | + | chr1_3:41941297-41941316 | None:intergenic | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_3:41939348-41939367 | Msa0118780:CDS | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_3:41939350-41939369 | Msa0118780:CDS | 45.0% |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1_3:41939372-41939391 | Msa0118780:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_3:41939394-41939413 | Msa0118780:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_3:41939413-41939432 | Msa0118780:intron | 45.0% | |
| TATATGCACCCTATTGGACC+AGG | - | chr1_3:41939560-41939579 | Msa0118780:intron | 45.0% | |
| ATGACCACGACGCAAATAAG+TGG | - | chr1_3:41939652-41939671 | Msa0118780:CDS | 45.0% | |
| GCAAATAAGTGGAGGAGTCA+GGG | - | chr1_3:41939663-41939682 | Msa0118780:CDS | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_3:41939881-41939900 | Msa0118780:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_3:41939959-41939978 | Msa0118780:intron | 45.0% | |
| !! | GGGTGGGTGTGATTTTGAAA+AGG | + | chr1_3:41940484-41940503 | None:intergenic | 45.0% |
| ! | GGTGGGTTCACTTCTTAAGT+GGG | + | chr1_3:41940634-41940653 | None:intergenic | 45.0% |
| TTAAGAAGTGAACCCACCCA+AGG | - | chr1_3:41940636-41940655 | Msa0118780:intron | 45.0% | |
| CATATATGTCTTGCCTTGGG+TGG | + | chr1_3:41940652-41940671 | None:intergenic | 45.0% | |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_3:41940961-41940980 | Msa0118780:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_3:41940965-41940984 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_3:41941276-41941295 | None:intergenic | 45.0% | |
| !! | TGCTTTTTATGGTGCTCCTC+CGG | + | chr1_3:41941297-41941316 | None:intergenic | 45.0% |
| !!! | AAGAATAAAAATTTTAAATT+TGG | + | chr1_3:41940237-41940256 | None:intergenic | 5.0% |
| !!! | AAATAATTTGTTTTAAATTT+TGG | - | chr1_3:41941150-41941169 | Msa0118780:CDS | 5.0% |
| !! | CAAATATATATAAAAAAAAA+AGG | + | chr1_3:41941198-41941217 | None:intergenic | 5.0% |
| !!! | CTTTTTTTTTTATATATATT+TGG | - | chr1_3:41941196-41941215 | Msa0118780:CDS | 5.0% |
| !!! | AAGAATAAAAATTTTAAATT+TGG | + | chr1_3:41940237-41940256 | None:intergenic | 5.0% |
| !!! | AAATAATTTGTTTTAAATTT+TGG | - | chr1_3:41941150-41941169 | Msa0118780:CDS | 5.0% |
| !! | CAAATATATATAAAAAAAAA+AGG | + | chr1_3:41941198-41941217 | None:intergenic | 5.0% |
| !!! | CTTTTTTTTTTATATATATT+TGG | - | chr1_3:41941196-41941215 | Msa0118780:CDS | 5.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_3:41939353-41939372 | Msa0118780:CDS | 50.0% |
| ACCACGACGCAAATAAGTGG+AGG | - | chr1_3:41939655-41939674 | Msa0118780:CDS | 50.0% | |
| TCCTCCACTTATTTGCGTCG+TGG | + | chr1_3:41939659-41939678 | None:intergenic | 50.0% | |
| CGCAAATAAGTGGAGGAGTC+AGG | - | chr1_3:41939662-41939681 | Msa0118780:CDS | 50.0% | |
| TTGGTCGGAGAATGTGATCC+GGG | + | chr1_3:41939695-41939714 | None:intergenic | 50.0% | |
| CTTGGTCGGAGAATGTGATC+CGG | + | chr1_3:41939696-41939715 | None:intergenic | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_3:41939888-41939907 | None:intergenic | 50.0% | |
| ! | GGGTGGGTTCACTTCTTAAG+TGG | + | chr1_3:41940635-41940654 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_3:41941007-41941026 | Msa0118780:intron | 50.0% | |
| ! | TTTTTATGGTGCTCCTCCGG+TGG | + | chr1_3:41941294-41941313 | None:intergenic | 50.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_3:41939353-41939372 | Msa0118780:CDS | 50.0% |
| ACCACGACGCAAATAAGTGG+AGG | - | chr1_3:41939655-41939674 | Msa0118780:CDS | 50.0% | |
| TCCTCCACTTATTTGCGTCG+TGG | + | chr1_3:41939659-41939678 | None:intergenic | 50.0% | |
| CGCAAATAAGTGGAGGAGTC+AGG | - | chr1_3:41939662-41939681 | Msa0118780:CDS | 50.0% | |
| TTGGTCGGAGAATGTGATCC+GGG | + | chr1_3:41939695-41939714 | None:intergenic | 50.0% | |
| CTTGGTCGGAGAATGTGATC+CGG | + | chr1_3:41939696-41939715 | None:intergenic | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_3:41939888-41939907 | None:intergenic | 50.0% | |
| ! | GGGTGGGTTCACTTCTTAAG+TGG | + | chr1_3:41940635-41940654 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_3:41941007-41941026 | Msa0118780:intron | 50.0% | |
| ! | TTTTTATGGTGCTCCTCCGG+TGG | + | chr1_3:41941294-41941313 | None:intergenic | 50.0% |
| ATGCACCCTATTGGACCAGG+TGG | - | chr1_3:41939563-41939582 | Msa0118780:intron | 55.0% | |
| CACCACCACCTGGTCCAATA+GGG | + | chr1_3:41939571-41939590 | None:intergenic | 55.0% | |
| AGATACGAACCACCACCACC+TGG | + | chr1_3:41939581-41939600 | None:intergenic | 55.0% | |
| !! | GAGGAGTCAGGGTTTTGACC+CGG | - | chr1_3:41939674-41939693 | Msa0118780:CDS | 55.0% |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_3:41939950-41939969 | Msa0118780:intron | 55.0% | |
| ! | CAAACCTTTTGAGCGTGCCC+AGG | + | chr1_3:41941033-41941052 | None:intergenic | 55.0% |
| TCTCATTGTGAAGCCACCGG+AGG | - | chr1_3:41941278-41941297 | Msa0118780:CDS | 55.0% | |
| ATGCACCCTATTGGACCAGG+TGG | - | chr1_3:41939563-41939582 | Msa0118780:intron | 55.0% | |
| CACCACCACCTGGTCCAATA+GGG | + | chr1_3:41939571-41939590 | None:intergenic | 55.0% | |
| AGATACGAACCACCACCACC+TGG | + | chr1_3:41939581-41939600 | None:intergenic | 55.0% | |
| !! | GAGGAGTCAGGGTTTTGACC+CGG | - | chr1_3:41939674-41939693 | Msa0118780:CDS | 55.0% |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_3:41939950-41939969 | Msa0118780:intron | 55.0% | |
| ! | CAAACCTTTTGAGCGTGCCC+AGG | + | chr1_3:41941033-41941052 | None:intergenic | 55.0% |
| TCTCATTGTGAAGCCACCGG+AGG | - | chr1_3:41941278-41941297 | Msa0118780:CDS | 55.0% | |
| CACCCTATTGGACCAGGTGG+TGG | - | chr1_3:41939566-41939585 | Msa0118780:intron | 60.0% | |
| CCACCACCACCTGGTCCAAT+AGG | + | chr1_3:41939572-41939591 | None:intergenic | 60.0% | |
| ! | CCTATTGGACCAGGTGGTGG+TGG | - | chr1_3:41939569-41939588 | Msa0118780:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_3:41941012-41941031 | Msa0118780:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_3:41941013-41941032 | Msa0118780:intron | 60.0% | |
| ! | TTTTGAGCGTGCCCAGGCCA+CGG | + | chr1_3:41941027-41941046 | None:intergenic | 60.0% |
| CACCCTATTGGACCAGGTGG+TGG | - | chr1_3:41939566-41939585 | Msa0118780:intron | 60.0% | |
| CCACCACCACCTGGTCCAAT+AGG | + | chr1_3:41939572-41939591 | None:intergenic | 60.0% | |
| ! | CCTATTGGACCAGGTGGTGG+TGG | - | chr1_3:41939569-41939588 | Msa0118780:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_3:41941012-41941031 | Msa0118780:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_3:41941013-41941032 | Msa0118780:intron | 60.0% | |
| ! | TTTTGAGCGTGCCCAGGCCA+CGG | + | chr1_3:41941027-41941046 | None:intergenic | 60.0% |
| GTGGCCTGGGCACGCTCAAA+AGG | - | chr1_3:41941026-41941045 | Msa0118780:intron | 65.0% | |
| GTGGCCTGGGCACGCTCAAA+AGG | - | chr1_3:41941026-41941045 | Msa0118780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 41939335 | 41941320 | 41939335 | ID=Msa0118780;Name=Msa0118780 |
| chr1_3 | mRNA | 41939335 | 41941320 | 41939335 | ID=Msa0118780-mRNA-1;Parent=Msa0118780;Name=Msa0118780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|191 |
| chr1_3 | exon | 41941065 | 41941320 | 41941065 | ID=Msa0118780-mRNA-1:exon:12706;Parent=Msa0118780-mRNA-1 |
| chr1_3 | exon | 41940675 | 41940778 | 41940675 | ID=Msa0118780-mRNA-1:exon:12705;Parent=Msa0118780-mRNA-1 |
| chr1_3 | exon | 41939608 | 41939726 | 41939608 | ID=Msa0118780-mRNA-1:exon:12704;Parent=Msa0118780-mRNA-1 |
| chr1_3 | exon | 41939335 | 41939431 | 41939335 | ID=Msa0118780-mRNA-1:exon:12703;Parent=Msa0118780-mRNA-1 |
| chr1_3 | CDS | 41941065 | 41941320 | 41941065 | ID=Msa0118780-mRNA-1:cds;Parent=Msa0118780-mRNA-1 |
| chr1_3 | CDS | 41940675 | 41940778 | 41940675 | ID=Msa0118780-mRNA-1:cds;Parent=Msa0118780-mRNA-1 |
| chr1_3 | CDS | 41939608 | 41939726 | 41939608 | ID=Msa0118780-mRNA-1:cds;Parent=Msa0118780-mRNA-1 |
| chr1_3 | CDS | 41939335 | 41939431 | 41939335 | ID=Msa0118780-mRNA-1:cds;Parent=Msa0118780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
