Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162100 | XP_013467750.1 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 1.15e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162100 | sp|Q8LGG8|USPAL_ARATH | 25.434 | 173 | 108 | 3 | 19 | 182 | 2 | 162 | 1.57e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162100 | A0A072VJ06 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 5.51e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0162100 | 0.802599 | 5.197354e-49 | -8.615850e-47 |
| Msa0023000 | Msa0162100 | 0.905364 | 4.640987e-80 | -8.615850e-47 |
| Msa0070880 | Msa0162100 | 0.870948 | 9.919571e-67 | -8.615850e-47 |
| Msa0118780 | Msa0162100 | 0.912502 | 1.810785e-83 | -8.615850e-47 |
| Msa0118810 | Msa0162100 | 0.825682 | 4.103537e-54 | -8.615850e-47 |
| Msa0162100 | Msa0162130 | 0.853464 | 2.348181e-61 | -8.615850e-47 |
| Msa0162100 | Msa0162220 | 0.867584 | 1.228559e-65 | -8.615850e-47 |
| Msa0162100 | Msa0162230 | 0.874463 | 6.624080e-68 | -8.615850e-47 |
| Msa0162100 | Msa0162240 | 0.874760 | 5.247840e-68 | -8.615850e-47 |
| Msa0162100 | Msa0189520 | 0.806217 | 9.158033e-50 | -8.615850e-47 |
| Msa0162100 | Msa0504020 | 0.800622 | 1.322044e-48 | -8.615850e-47 |
| Msa0162100 | Msa0534900 | 0.814102 | 1.828061e-51 | -8.615850e-47 |
| Msa0162100 | Msa0557480 | 0.816449 | 5.498363e-52 | -8.615850e-47 |
| Msa0162100 | Msa0769980 | 0.803829 | 2.892108e-49 | -8.615850e-47 |
| Msa0162100 | Msa0784860 | 0.863042 | 3.301759e-64 | -8.615850e-47 |
| Msa0162100 | Msa0817730 | 0.816446 | 5.507692e-52 | -8.615850e-47 |
| Msa0162100 | Msa0858180 | 0.821355 | 4.220064e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162100 | MtrunA17_Chr1g0176311 | 93.194 | 191 | 12 | 1 | 1 | 191 | 1 | 190 | 1.06e-131 | 367 |
| Msa0162100 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 21 | 191 | 1 | 177 | 8.49e-99 | 283 |
| Msa0162100 | MtrunA17_Chr1g0192651 | 40.462 | 173 | 87 | 4 | 13 | 185 | 2 | 158 | 1.54e-35 | 122 |
| Msa0162100 | MtrunA17_Chr1g0195661 | 36.723 | 177 | 98 | 4 | 13 | 188 | 4 | 167 | 2.12e-31 | 112 |
| Msa0162100 | MtrunA17_Chr1g0194801 | 34.756 | 164 | 92 | 4 | 24 | 184 | 7 | 158 | 3.48e-30 | 108 |
| Msa0162100 | MtrunA17_Chr5g0427291 | 35.260 | 173 | 102 | 5 | 16 | 182 | 2 | 170 | 3.91e-28 | 103 |
| Msa0162100 | MtrunA17_Chr7g0269301 | 33.333 | 168 | 99 | 3 | 22 | 188 | 7 | 162 | 5.11e-23 | 90.1 |
| Msa0162100 | MtrunA17_Chr2g0294421 | 31.737 | 167 | 103 | 3 | 24 | 188 | 6 | 163 | 2.84e-19 | 80.5 |
| Msa0162100 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 122 | 182 | 5 | 65 | 5.64e-19 | 77.0 |
| Msa0162100 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 24 | 182 | 6 | 157 | 8.12e-19 | 79.3 |
| Msa0162100 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 25 | 191 | 7 | 166 | 5.93e-18 | 77.0 |
| Msa0162100 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 24 | 188 | 26 | 187 | 1.65e-17 | 77.4 |
| Msa0162100 | MtrunA17_Chr6g0450171 | 34.483 | 87 | 57 | 0 | 96 | 182 | 76 | 162 | 2.41e-16 | 73.2 |
| Msa0162100 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 27 | 182 | 9 | 157 | 1.54e-14 | 68.2 |
| Msa0162100 | MtrunA17_Chr7g0240701 | 28.485 | 165 | 99 | 3 | 24 | 182 | 6 | 157 | 7.45e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162100 | AT3G11930.1 | 55.114 | 176 | 77 | 2 | 15 | 189 | 25 | 199 | 4.78e-69 | 209 |
| Msa0162100 | AT3G11930.2 | 55.367 | 177 | 76 | 3 | 15 | 189 | 25 | 200 | 7.99e-68 | 206 |
| Msa0162100 | AT3G11930.4 | 55.056 | 178 | 76 | 3 | 15 | 189 | 25 | 201 | 9.20e-68 | 206 |
| Msa0162100 | AT3G11930.3 | 48.276 | 203 | 76 | 4 | 15 | 189 | 25 | 226 | 2.17e-61 | 190 |
| Msa0162100 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 25 | 186 | 32 | 192 | 5.13e-59 | 184 |
| Msa0162100 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 25 | 186 | 32 | 185 | 3.82e-55 | 174 |
| Msa0162100 | AT1G09740.2 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 7.26e-31 | 110 |
| Msa0162100 | AT1G09740.1 | 38.415 | 164 | 94 | 2 | 25 | 186 | 10 | 168 | 7.26e-31 | 110 |
| Msa0162100 | AT3G62550.1 | 35.404 | 161 | 90 | 4 | 24 | 182 | 8 | 156 | 3.09e-26 | 99.0 |
| Msa0162100 | AT2G47710.1 | 32.738 | 168 | 100 | 3 | 19 | 185 | 4 | 159 | 5.12e-26 | 98.2 |
| Msa0162100 | AT1G68300.1 | 34.132 | 167 | 97 | 4 | 16 | 182 | 4 | 157 | 5.67e-25 | 95.5 |
| Msa0162100 | AT3G17020.1 | 32.941 | 170 | 101 | 3 | 15 | 182 | 2 | 160 | 5.86e-19 | 80.1 |
| Msa0162100 | AT3G01520.1 | 25.434 | 173 | 108 | 3 | 19 | 182 | 2 | 162 | 1.60e-17 | 76.6 |
| Msa0162100 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 25 | 182 | 7 | 157 | 9.59e-17 | 73.9 |
| Msa0162100 | AT5G14680.1 | 26.190 | 168 | 103 | 3 | 24 | 182 | 7 | 162 | 4.51e-16 | 72.8 |
| Msa0162100 | AT1G11360.2 | 29.480 | 173 | 102 | 4 | 22 | 186 | 37 | 197 | 5.50e-14 | 68.6 |
| Msa0162100 | AT1G11360.1 | 29.480 | 173 | 102 | 4 | 22 | 186 | 37 | 197 | 5.50e-14 | 68.6 |
| Msa0162100 | AT1G11360.4 | 29.480 | 173 | 102 | 4 | 22 | 186 | 37 | 197 | 5.50e-14 | 68.6 |
| Msa0162100 | AT1G11360.3 | 29.480 | 173 | 102 | 4 | 22 | 186 | 37 | 197 | 5.50e-14 | 68.6 |
| Msa0162100 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 27 | 185 | 9 | 160 | 1.00e-12 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCATATAATTGTGGAAAA+TGG | 0.167677 | 1_4:+38411703 | None:intergenic |
| CACAATTATATGCACCCTAT+TGG | 0.247878 | 1_4:-38411695 | Msa0162100:CDS |
| CCAGCACCACCTGGTCCAAT+AGG | 0.340944 | 1_4:+38411680 | None:intergenic |
| GAGGGGAGGTGCAGAAGAAA+AGG | 0.352833 | 1_4:-38411882 | Msa0162100:CDS |
| ATTTGGTGCAGAGCATTTCT+TGG | 0.356343 | 1_4:-38409130 | Msa0162100:intron |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_4:-38410064 | Msa0162100:CDS |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1_4:-38411923 | None:intergenic |
| CCTATTGGACCAGGTGGTGC+TGG | 0.410297 | 1_4:-38411680 | Msa0162100:intron |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_4:-38410079 | Msa0162100:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1_4:-38411381 | Msa0162100:CDS |
| TGCATATAATTGTGGAAAAT+GGG | 0.413967 | 1_4:+38411704 | None:intergenic |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_4:+38410114 | None:intergenic |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_4:-38410063 | Msa0162100:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_4:-38410115 | Msa0162100:CDS |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_4:+38411342 | None:intergenic |
| AGGGGAGGTGCAGAAGAAAA+GGG | 0.467138 | 1_4:-38411881 | Msa0162100:CDS |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_4:-38410141 | Msa0162100:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1_4:+38411377 | None:intergenic |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_4:-38411753 | Msa0162100:CDS |
| GTGGCCTGGGCACACTCAAA+AGG | 0.501846 | 1_4:-38410050 | Msa0162100:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_4:-38411303 | Msa0162100:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_4:+38409070 | None:intergenic |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_4:+38410115 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_4:+38411760 | None:intergenic |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_4:-38411330 | Msa0162100:CDS |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1_4:-38411900 | Msa0162100:CDS |
| CAGCACCACCTGGTCCAATA+GGG | 0.517598 | 1_4:+38411681 | None:intergenic |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_4:+38411789 | None:intergenic |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_4:-38411747 | Msa0162100:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_4:-38411331 | Msa0162100:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_4:-38411777 | Msa0162100:CDS |
| CAATAGGGTGCATATAATTG+TGG | 0.539598 | 1_4:+38411696 | None:intergenic |
| AAAGGGAAGGATGAAGATGA+AGG | 0.542906 | 1_4:-38411864 | Msa0162100:CDS |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_4:-38410069 | Msa0162100:CDS |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_4:-38411312 | Msa0162100:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_4:-38410078 | Msa0162100:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_4:-38411773 | Msa0162100:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1_4:-38411901 | Msa0162100:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_4:-38411752 | Msa0162100:CDS |
| GAGGTGCAGAAGAAAAGGGA+AGG | 0.586628 | 1_4:-38411877 | Msa0162100:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_4:+38411790 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_4:-38411855 | Msa0162100:CDS |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1_4:-38411899 | Msa0162100:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_4:-38410131 | Msa0162100:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1_4:-38411365 | Msa0162100:CDS |
| AGATACGAACCAGCACCACC+TGG | 0.633023 | 1_4:+38411671 | None:intergenic |
| AAGGATGAAGATGAAGGTGA+TGG | 0.637528 | 1_4:-38411858 | Msa0162100:CDS |
| TATATGCACCCTATTGGACC+AGG | 0.642137 | 1_4:-38411689 | Msa0162100:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_4:-38411836 | Msa0162100:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_4:-38410130 | Msa0162100:CDS |
| ATGCACCCTATTGGACCAGG+TGG | 0.672679 | 1_4:-38411686 | Msa0162100:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_4:-38409065 | Msa0162100:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1_4:-38411920 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1_4:-38411896 | Msa0162100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTGAAATAAAATTAAA+TGG | - | chr1_4:38409794-38409813 | Msa0162100:intron | 10.0% |
| !! | TATTTAATTGTTAAGTTATA+GGG | + | chr1_4:38410249-38410268 | None:intergenic | 10.0% |
| !! | ATATTTAATTGTTAAGTTAT+AGG | + | chr1_4:38410250-38410269 | None:intergenic | 10.0% |
| !! | AATAAAAAAGCAAAAAAATT+TGG | - | chr1_4:38410582-38410601 | Msa0162100:intron | 10.0% |
| !! | ATAAAAAAGCAAAAAAATTT+GGG | - | chr1_4:38410583-38410602 | Msa0162100:intron | 10.0% |
| !! | AATTGATAAAAATTAAAAGA+TGG | + | chr1_4:38410673-38410692 | None:intergenic | 10.0% |
| !! | TAAACAAAATATAGAAAATA+TGG | + | chr1_4:38410964-38410983 | None:intergenic | 10.0% |
| !!! | ATATTTTCTATATTTTGTTT+AGG | - | chr1_4:38410963-38410982 | Msa0162100:intron | 10.0% |
| !!! | TATTTTCTATATTTTGTTTA+GGG | - | chr1_4:38410964-38410983 | Msa0162100:intron | 10.0% |
| !!! | AAAAAGTTGATATATTTATA+AGG | + | chr1_4:38411007-38411026 | None:intergenic | 10.0% |
| !!! | ATTAAAATAGAAAATTTTTG+AGG | + | chr1_4:38411068-38411087 | None:intergenic | 10.0% |
| !!! | TAAAATTTTTAGATTTTTTG+AGG | - | chr1_4:38411216-38411235 | Msa0162100:intron | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | - | chr1_4:38411267-38411286 | Msa0162100:intron | 10.0% |
| !! | GATAATTTGATATATTTATT+GGG | - | chr1_4:38411403-38411422 | Msa0162100:intron | 10.0% |
| !! | TTTAGTTAAATTAAAAAGAA+AGG | + | chr1_4:38411445-38411464 | None:intergenic | 10.0% |
| !! | GAATTCTTAAAAAATAATCT+GGG | + | chr1_4:38409894-38409913 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGATATTTTCAA+TGG | + | chr1_4:38410290-38410309 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_4:38410494-38410513 | Msa0162100:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_4:38410495-38410514 | Msa0162100:intron | 15.0% |
| !! | AGTTGAAGAAATTTATTATA+AGG | + | chr1_4:38411039-38411058 | None:intergenic | 15.0% |
| !! | GGATAATTTGATATATTTAT+TGG | - | chr1_4:38411402-38411421 | Msa0162100:intron | 15.0% |
| !!! | AAATGACACTTATTTTAAAA+CGG | + | chr1_4:38411514-38411533 | None:intergenic | 15.0% |
| !! | TGTACATAGTAATAATTTAA+GGG | + | chr1_4:38411614-38411633 | None:intergenic | 15.0% |
| !!! | TTTTTCATTATGATACAATT+TGG | + | chr1_4:38411643-38411662 | None:intergenic | 15.0% |
| !!! | AAACAACATTCATTTTAAAA+CGG | - | chr1_4:38411753-38411772 | Msa0162100:CDS | 15.0% |
| !!! | TATTAATTTTGGTTTCATTT+TGG | - | chr1_4:38411782-38411801 | Msa0162100:CDS | 15.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_4:38409332-38409351 | None:intergenic | 20.0% |
| !! | AAATATCAAAATTGCTTAGT+CGG | + | chr1_4:38409420-38409439 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTATTTGAGTAG+AGG | + | chr1_4:38409706-38409725 | None:intergenic | 20.0% |
| !! | GGAATTCTTAAAAAATAATC+TGG | + | chr1_4:38409895-38409914 | None:intergenic | 20.0% |
| !! | CTCAAATTTCTCTTATAAAT+TGG | + | chr1_4:38410108-38410127 | None:intergenic | 20.0% |
| !! | CCTATTTATAAGAAAAAGTT+TGG | + | chr1_4:38410190-38410209 | None:intergenic | 20.0% |
| !!! | CCAAACTTTTTCTTATAAAT+AGG | - | chr1_4:38410187-38410206 | Msa0162100:intron | 20.0% |
| !!! | TTCAATTTTGGAAAACTTAA+TGG | + | chr1_4:38410339-38410358 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_4:38410496-38410515 | Msa0162100:intron | 20.0% |
| !!! | TGTCGAAATCAATTTTATTT+GGG | - | chr1_4:38410701-38410720 | Msa0162100:intron | 20.0% |
| !! | TACATATGAGTTTACTTAAA+AGG | + | chr1_4:38411101-38411120 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAAGGGACTTAA+AGG | - | chr1_4:38411381-38411400 | Msa0162100:CDS | 20.0% |
| !! | GTGTACATAGTAATAATTTA+AGG | + | chr1_4:38411615-38411634 | None:intergenic | 20.0% |
| !!! | AAAATAGCTTTGTTACATAT+TGG | + | chr1_4:38411670-38411689 | None:intergenic | 20.0% |
| !!! | TTACCCGTTTTTTTTATATT+TGG | - | chr1_4:38411812-38411831 | Msa0162100:CDS | 20.0% |
| !! | TGCACCAAATATAAAAAAAA+CGG | + | chr1_4:38411819-38411838 | None:intergenic | 20.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_4:38409172-38409191 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_4:38409173-38409192 | None:intergenic | 25.0% |
| ! | TGCATATAATTGTGGAAAAT+GGG | + | chr1_4:38409258-38409277 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_4:38409324-38409343 | None:intergenic | 25.0% |
| ! | GTTGAAGTGATAAAATATTG+AGG | + | chr1_4:38409552-38409571 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAT+AGG | - | chr1_4:38409840-38409859 | Msa0162100:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCATA+GGG | - | chr1_4:38409841-38409860 | Msa0162100:intron | 25.0% |
| !!! | TTTATCATAGGGTTTTGTTA+AGG | - | chr1_4:38409852-38409871 | Msa0162100:intron | 25.0% |
| ! | GGTGTAATTGAAGAAAATAA+GGG | + | chr1_4:38410007-38410026 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATTGGAC+CGG | + | chr1_4:38410103-38410122 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr1_4:38410128-38410147 | Msa0162100:CDS | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | - | chr1_4:38410192-38410211 | Msa0162100:intron | 25.0% |
| ! | TTTGGAAAACTTAATGGAAT+GGG | + | chr1_4:38410333-38410352 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAACTTAATGGAA+TGG | + | chr1_4:38410334-38410353 | None:intergenic | 25.0% |
| !! | TGGTCAAATGTTTTCAATTT+TGG | + | chr1_4:38410351-38410370 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAAAGAACA+AGG | + | chr1_4:38410419-38410438 | None:intergenic | 25.0% |
| !! | GTGTCGAAATCAATTTTATT+TGG | - | chr1_4:38410700-38410719 | Msa0162100:intron | 25.0% |
| !!! | GTCGAAATCAATTTTATTTG+GGG | - | chr1_4:38410702-38410721 | Msa0162100:intron | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr1_4:38411340-38411359 | Msa0162100:CDS | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr1_4:38411341-38411360 | Msa0162100:CDS | 25.0% |
| !! | TGGTGACTGAAAATTTTAAA+GGG | - | chr1_4:38411372-38411391 | Msa0162100:CDS | 25.0% |
| !! | AAATGAAGTACTAACAAACT+TGG | - | chr1_4:38411480-38411499 | Msa0162100:intron | 25.0% |
| !!! | TAAGGGTACTATTAGAAAAA+TGG | + | chr1_4:38411597-38411616 | None:intergenic | 25.0% |
| !!! | AACATTCATTTTAAAACGGA+AGG | - | chr1_4:38411757-38411776 | Msa0162100:CDS | 25.0% |
| ! | GCACCAAATATAAAAAAAAC+GGG | + | chr1_4:38411818-38411837 | None:intergenic | 25.0% |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | - | chr1_4:38409146-38409165 | Msa0162100:intron | 30.0% |
| GTGCATATAATTGTGGAAAA+TGG | + | chr1_4:38409259-38409278 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_4:38409808-38409827 | Msa0162100:intron | 30.0% | |
| AGAAAATAAGGGAATAGCTT+TGG | + | chr1_4:38409996-38410015 | None:intergenic | 30.0% | |
| GGGTGTAATTGAAGAAAATA+AGG | + | chr1_4:38410008-38410027 | None:intergenic | 30.0% | |
| !!! | ATTACACCCTTTGTTTTTCT+TGG | - | chr1_4:38410019-38410038 | Msa0162100:intron | 30.0% |
| CTTTGACCAAGAAAAACAAA+GGG | + | chr1_4:38410028-38410047 | None:intergenic | 30.0% | |
| TAGATCAATTACCCATTATC+TGG | + | chr1_4:38410051-38410070 | None:intergenic | 30.0% | |
| AATGGGTAATTGATCTACAA+AGG | - | chr1_4:38410054-38410073 | Msa0162100:CDS | 30.0% | |
| ATGGGTAATTGATCTACAAA+GGG | - | chr1_4:38410055-38410074 | Msa0162100:CDS | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+CGG | + | chr1_4:38410167-38410186 | None:intergenic | 30.0% |
| !!! | GATATTTTCAATGGCTTGTT+GGG | + | chr1_4:38410281-38410300 | None:intergenic | 30.0% |
| !! | TGATATTTTCAATGGCTTGT+TGG | + | chr1_4:38410282-38410301 | None:intergenic | 30.0% |
| !! | GGTATGATTTGTGTGTTTTA+GGG | + | chr1_4:38410398-38410417 | None:intergenic | 30.0% |
| !! | AGGTATGATTTGTGTGTTTT+AGG | + | chr1_4:38410399-38410418 | None:intergenic | 30.0% |
| GGGATGAATCAATTTAGAAA+AGG | + | chr1_4:38410442-38410461 | None:intergenic | 30.0% | |
| TAGGTGTTCATTTCTTAAGT+GGG | + | chr1_4:38410462-38410481 | None:intergenic | 30.0% | |
| TTAGGTGTTCATTTCTTAAG+TGG | + | chr1_4:38410463-38410482 | None:intergenic | 30.0% | |
| ACTTAAGAAATGAACACCTA+AGG | - | chr1_4:38410462-38410481 | Msa0162100:intron | 30.0% | |
| ! | TTAAGAAGAGAGTATATACG+TGG | + | chr1_4:38410741-38410760 | None:intergenic | 30.0% |
| ATGATTTATCTAGCCAAATC+TGG | - | chr1_4:38410762-38410781 | Msa0162100:intron | 30.0% | |
| ! | ATGAACATTTTCACCAGATT+TGG | + | chr1_4:38410778-38410797 | None:intergenic | 30.0% |
| CTGGTGAAAATGTTCATTAA+TGG | - | chr1_4:38410781-38410800 | Msa0162100:intron | 30.0% | |
| ATGTTCATTAATGGAATTGC+AGG | - | chr1_4:38410790-38410809 | Msa0162100:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_4:38410881-38410900 | Msa0162100:intron | 30.0% |
| TTAAAAATAGGGACCAAAAG+TGG | - | chr1_4:38411352-38411371 | Msa0162100:CDS | 30.0% | |
| ! | AAATTTTCAGTCACCACTTT+TGG | + | chr1_4:38411368-38411387 | None:intergenic | 30.0% |
| ! | GTGGTGACTGAAAATTTTAA+AGG | - | chr1_4:38411371-38411390 | Msa0162100:CDS | 30.0% |
| !!! | GACACTTATTTTAAAACGGA+TGG | + | chr1_4:38411510-38411529 | None:intergenic | 30.0% |
| !!! | AACGGAAGGAGTATTAATTT+TGG | - | chr1_4:38411771-38411790 | Msa0162100:CDS | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_4:38411788-38411807 | Msa0162100:CDS | 30.0% |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | - | chr1_4:38409145-38409164 | Msa0162100:intron | 35.0% |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_4:38409206-38409225 | Msa0162100:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_4:38409207-38409226 | Msa0162100:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_4:38409212-38409231 | Msa0162100:intron | 35.0% | |
| CAATAGGGTGCATATAATTG+TGG | + | chr1_4:38409266-38409285 | None:intergenic | 35.0% | |
| CACAATTATATGCACCCTAT+TGG | - | chr1_4:38409264-38409283 | Msa0162100:intron | 35.0% | |
| GTGGCTTAAGAAATTGAGTT+TGG | - | chr1_4:38409827-38409846 | Msa0162100:intron | 35.0% | |
| GCTTTGACCAAGAAAAACAA+AGG | + | chr1_4:38410029-38410048 | None:intergenic | 35.0% | |
| ATCTGGTTAAAAGTTCAGTC+CGG | - | chr1_4:38410145-38410164 | Msa0162100:CDS | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr1_4:38410195-38410214 | Msa0162100:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr1_4:38410196-38410215 | Msa0162100:intron | 35.0% | |
| GAAAACTTAATGGAATGGGT+GGG | + | chr1_4:38410329-38410348 | None:intergenic | 35.0% | |
| !!! | ACCAGTTTTCTAGTTGCATT+AGG | - | chr1_4:38410367-38410386 | Msa0162100:intron | 35.0% |
| ACCTAATGCAACTAGAAAAC+TGG | + | chr1_4:38410371-38410390 | None:intergenic | 35.0% | |
| !!! | TGATTTGTGTGTTTTAGGGA+GGG | + | chr1_4:38410394-38410413 | None:intergenic | 35.0% |
| !!! | ATGATTTGTGTGTTTTAGGG+AGG | + | chr1_4:38410395-38410414 | None:intergenic | 35.0% |
| TCTCATATATGTCTTGCCTT+AGG | + | chr1_4:38410481-38410500 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_4:38410818-38410837 | Msa0162100:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_4:38410880-38410899 | Msa0162100:intron | 35.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_4:38409059-38409078 | Msa0162100:CDS | 40.0% |
| AAAGGGAAGGATGAAGATGA+AGG | - | chr1_4:38409095-38409114 | Msa0162100:CDS | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_4:38409101-38409120 | Msa0162100:CDS | 40.0% | |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_4:38409182-38409201 | Msa0162100:intron | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_4:38409186-38409205 | Msa0162100:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_4:38409202-38409221 | None:intergenic | 40.0% | |
| ! | GTGCGTTGAATTGAGACTTT+TGG | - | chr1_4:38409442-38409461 | Msa0162100:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_4:38409572-38409591 | Msa0162100:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_4:38409594-38409613 | Msa0162100:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_4:38409620-38409639 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_4:38409628-38409647 | Msa0162100:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_4:38409629-38409648 | Msa0162100:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_4:38409692-38409711 | None:intergenic | 40.0% | |
| TCTTGGTCAAAGCCAGATAA+TGG | - | chr1_4:38410036-38410055 | Msa0162100:intron | 40.0% | |
| CTTGGTCAAAGCCAGATAAT+GGG | - | chr1_4:38410037-38410056 | Msa0162100:intron | 40.0% | |
| AATTTCTGACCTACTACCTC+CGG | - | chr1_4:38410081-38410100 | Msa0162100:CDS | 40.0% | |
| TCTCTTATAAATTGGACCGG+AGG | + | chr1_4:38410100-38410119 | None:intergenic | 40.0% | |
| CAACTATCTAATACTCCCTC+CGG | + | chr1_4:38410214-38410233 | None:intergenic | 40.0% | |
| !! | TCAATGGCTTGTTGGGATTA+GGG | + | chr1_4:38410274-38410293 | None:intergenic | 40.0% |
| !! | TTCAATGGCTTGTTGGGATT+AGG | + | chr1_4:38410275-38410294 | None:intergenic | 40.0% |
| GGAAAACTTAATGGAATGGG+TGG | + | chr1_4:38410330-38410349 | None:intergenic | 40.0% | |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_4:38410828-38410847 | Msa0162100:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_4:38410829-38410848 | Msa0162100:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_4:38410847-38410866 | None:intergenic | 40.0% | |
| !! | ATTTGGTGCAGAGCATTTCT+TGG | - | chr1_4:38411829-38411848 | Msa0162100:CDS | 40.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_4:38409058-38409077 | Msa0162100:CDS | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_4:38409060-38409079 | Msa0162100:CDS | 45.0% |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_4:38409104-38409123 | Msa0162100:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_4:38409123-38409142 | Msa0162100:intron | 45.0% | |
| TATATGCACCCTATTGGACC+AGG | - | chr1_4:38409270-38409289 | Msa0162100:intron | 45.0% | |
| TTAGTCGGACAATGTGATCC+GGG | + | chr1_4:38409405-38409424 | None:intergenic | 45.0% | |
| CTTAGTCGGACAATGTGATC+CGG | + | chr1_4:38409406-38409425 | None:intergenic | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_4:38409578-38409597 | Msa0162100:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_4:38409656-38409675 | Msa0162100:intron | 45.0% | |
| TAAATTGGACCGGAGGTAGT+AGG | + | chr1_4:38410093-38410112 | None:intergenic | 45.0% | |
| !! | GGTGGGTGTGATTTTGGAAA+GGG | + | chr1_4:38410312-38410331 | None:intergenic | 45.0% |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_4:38410844-38410863 | Msa0162100:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_4:38410848-38410867 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_4:38411892-38411911 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_4:38411910-38411929 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_4:38411913-38411932 | None:intergenic | 45.0% |
| !!! | AAGAATAAAAATTTTAAATT+CGG | + | chr1_4:38409916-38409935 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTATTTTT+GGG | + | chr1_4:38411182-38411201 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTATTTT+TGG | + | chr1_4:38411183-38411202 | None:intergenic | 5.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_4:38409063-38409082 | Msa0162100:CDS | 50.0% |
| ! | AGGGGAGGTGCAGAAGAAAA+GGG | - | chr1_4:38409078-38409097 | Msa0162100:CDS | 50.0% |
| GAGGTGCAGAAGAAAAGGGA+AGG | - | chr1_4:38409082-38409101 | Msa0162100:CDS | 50.0% | |
| ATGACCACGACGCACATAAG+TGG | - | chr1_4:38409362-38409381 | Msa0162100:intron | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_4:38409585-38409604 | None:intergenic | 50.0% | |
| !! | GGGTGGGTGTGATTTTGGAA+AGG | + | chr1_4:38410313-38410332 | None:intergenic | 50.0% |
| ! | GGAATGGGTGGGTGTGATTT+TGG | + | chr1_4:38410318-38410337 | None:intergenic | 50.0% |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_4:38410890-38410909 | Msa0162100:intron | 50.0% | |
| !! | CTAACCTTTTGAGTGTGCCC+AGG | + | chr1_4:38410916-38410935 | None:intergenic | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_4:38411894-38411913 | Msa0162100:CDS | 50.0% | |
| ! | GAGGGGAGGTGCAGAAGAAA+AGG | - | chr1_4:38409077-38409096 | Msa0162100:CDS | 55.0% |
| ATGCACCCTATTGGACCAGG+TGG | - | chr1_4:38409273-38409292 | Msa0162100:intron | 55.0% | |
| CAGCACCACCTGGTCCAATA+GGG | + | chr1_4:38409281-38409300 | None:intergenic | 55.0% | |
| AGATACGAACCAGCACCACC+TGG | + | chr1_4:38409291-38409310 | None:intergenic | 55.0% | |
| ACCACGACGCACATAAGTGG+CGG | - | chr1_4:38409365-38409384 | Msa0162100:intron | 55.0% | |
| ! | GCACATAAGTGGCGGAGTCA+GGG | - | chr1_4:38409373-38409392 | Msa0162100:intron | 55.0% |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_4:38409647-38409666 | Msa0162100:intron | 55.0% | |
| !! | TTTTGAGTGTGCCCAGGCCA+CGG | + | chr1_4:38410910-38410929 | None:intergenic | 55.0% |
| CCAGCACCACCTGGTCCAAT+AGG | + | chr1_4:38409282-38409301 | None:intergenic | 60.0% | |
| CCTATTGGACCAGGTGGTGC+TGG | - | chr1_4:38409279-38409298 | Msa0162100:intron | 60.0% | |
| TCCGCCACTTATGTGCGTCG+TGG | + | chr1_4:38409369-38409388 | None:intergenic | 60.0% | |
| ! | CGCACATAAGTGGCGGAGTC+AGG | - | chr1_4:38409372-38409391 | Msa0162100:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_4:38410895-38410914 | Msa0162100:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_4:38410896-38410915 | Msa0162100:intron | 60.0% | |
| GTGGCCTGGGCACACTCAAA+AGG | - | chr1_4:38410909-38410928 | Msa0162100:intron | 60.0% | |
| ! | GCGGAGTCAGGGTTCTGACC+CGG | - | chr1_4:38409384-38409403 | Msa0162100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38409045 | 38411936 | 38409045 | ID=Msa0162100;Name=Msa0162100 |
| chr1_4 | mRNA | 38409045 | 38411936 | 38409045 | ID=Msa0162100-mRNA-1;Parent=Msa0162100;Name=Msa0162100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|191 |
| chr1_4 | exon | 38411681 | 38411936 | 38411681 | ID=Msa0162100-mRNA-1:exon:11248;Parent=Msa0162100-mRNA-1 |
| chr1_4 | exon | 38411304 | 38411407 | 38411304 | ID=Msa0162100-mRNA-1:exon:11247;Parent=Msa0162100-mRNA-1 |
| chr1_4 | exon | 38410051 | 38410169 | 38410051 | ID=Msa0162100-mRNA-1:exon:11246;Parent=Msa0162100-mRNA-1 |
| chr1_4 | exon | 38409045 | 38409141 | 38409045 | ID=Msa0162100-mRNA-1:exon:11245;Parent=Msa0162100-mRNA-1 |
| chr1_4 | CDS | 38411681 | 38411936 | 38411681 | ID=Msa0162100-mRNA-1:cds;Parent=Msa0162100-mRNA-1 |
| chr1_4 | CDS | 38411304 | 38411407 | 38411304 | ID=Msa0162100-mRNA-1:cds;Parent=Msa0162100-mRNA-1 |
| chr1_4 | CDS | 38410051 | 38410169 | 38410051 | ID=Msa0162100-mRNA-1:cds;Parent=Msa0162100-mRNA-1 |
| chr1_4 | CDS | 38409045 | 38409141 | 38409045 | ID=Msa0162100-mRNA-1:cds;Parent=Msa0162100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
