Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162220 | sp|Q8LGG8|USPAL_ARATH | 25.595 | 168 | 104 | 3 | 4 | 162 | 7 | 162 | 2.15e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162220 | A0A072VJ06 | 98.246 | 171 | 3 | 0 | 1 | 171 | 20 | 190 | 2.18e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0162220 | 0.867407 | 1.400456e-65 | -8.615850e-47 |
| Msa0070880 | Msa0162220 | 0.831721 | 1.421536e-55 | -8.615850e-47 |
| Msa0118780 | Msa0162220 | 0.869081 | 4.043812e-66 | -8.615850e-47 |
| Msa0162100 | Msa0162220 | 0.867584 | 1.228559e-65 | -8.615850e-47 |
| Msa0162130 | Msa0162220 | 0.811413 | 7.087406e-51 | -8.615850e-47 |
| Msa0162220 | Msa0162230 | 0.903368 | 3.728642e-79 | -8.615850e-47 |
| Msa0162220 | Msa0162240 | 0.903852 | 2.259119e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162220 | MtrunA17_Chr1g0176311 | 98.246 | 171 | 3 | 0 | 1 | 171 | 20 | 190 | 4.19e-126 | 352 |
| Msa0162220 | MtrunA17_Chr1g0176321 | 80.226 | 177 | 29 | 4 | 1 | 171 | 1 | 177 | 3.40e-99 | 283 |
| Msa0162220 | MtrunA17_Chr1g0192651 | 41.358 | 162 | 82 | 4 | 4 | 165 | 10 | 158 | 1.68e-34 | 119 |
| Msa0162220 | MtrunA17_Chr1g0195661 | 39.521 | 167 | 83 | 5 | 6 | 168 | 15 | 167 | 3.88e-31 | 110 |
| Msa0162220 | MtrunA17_Chr1g0194801 | 35.366 | 164 | 91 | 4 | 4 | 164 | 7 | 158 | 7.76e-31 | 109 |
| Msa0162220 | MtrunA17_Chr5g0427291 | 35.976 | 164 | 96 | 4 | 5 | 162 | 10 | 170 | 9.49e-28 | 102 |
| Msa0162220 | MtrunA17_Chr7g0269301 | 33.929 | 168 | 98 | 3 | 2 | 168 | 7 | 162 | 1.23e-23 | 91.3 |
| Msa0162220 | MtrunA17_Chr4g0001641 | 49.180 | 61 | 31 | 0 | 102 | 162 | 5 | 65 | 4.43e-19 | 77.0 |
| Msa0162220 | MtrunA17_Chr4g0032261 | 32.738 | 168 | 88 | 4 | 4 | 162 | 6 | 157 | 5.35e-19 | 79.3 |
| Msa0162220 | MtrunA17_Chr2g0294421 | 31.138 | 167 | 104 | 3 | 4 | 168 | 6 | 163 | 6.97e-19 | 79.0 |
| Msa0162220 | MtrunA17_Chr5g0433951 | 29.825 | 171 | 105 | 3 | 5 | 171 | 7 | 166 | 3.33e-18 | 77.0 |
| Msa0162220 | MtrunA17_Chr2g0323291 | 30.556 | 180 | 92 | 6 | 4 | 168 | 26 | 187 | 1.13e-17 | 77.0 |
| Msa0162220 | MtrunA17_Chr6g0450171 | 31.959 | 97 | 66 | 0 | 66 | 162 | 66 | 162 | 1.32e-16 | 73.2 |
| Msa0162220 | MtrunA17_Chr4g0008801 | 30.625 | 160 | 96 | 4 | 7 | 162 | 9 | 157 | 1.27e-14 | 67.8 |
| Msa0162220 | MtrunA17_Chr7g0240701 | 27.607 | 163 | 103 | 3 | 4 | 162 | 6 | 157 | 8.99e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162220 | AT3G11930.1 | 56.886 | 167 | 70 | 2 | 4 | 169 | 34 | 199 | 2.84e-69 | 209 |
| Msa0162220 | AT3G11930.2 | 57.143 | 168 | 69 | 3 | 4 | 169 | 34 | 200 | 4.97e-68 | 206 |
| Msa0162220 | AT3G11930.4 | 56.805 | 169 | 69 | 3 | 4 | 169 | 34 | 201 | 8.30e-68 | 205 |
| Msa0162220 | AT3G11930.3 | 49.485 | 194 | 69 | 4 | 4 | 169 | 34 | 226 | 1.52e-61 | 190 |
| Msa0162220 | AT3G58450.1 | 53.704 | 162 | 74 | 1 | 5 | 166 | 32 | 192 | 1.59e-59 | 184 |
| Msa0162220 | AT3G58450.2 | 53.086 | 162 | 68 | 3 | 5 | 166 | 32 | 185 | 9.84e-56 | 174 |
| Msa0162220 | AT1G09740.2 | 39.024 | 164 | 93 | 2 | 5 | 166 | 10 | 168 | 2.23e-31 | 111 |
| Msa0162220 | AT1G09740.1 | 39.024 | 164 | 93 | 2 | 5 | 166 | 10 | 168 | 2.23e-31 | 111 |
| Msa0162220 | AT3G62550.1 | 35.404 | 161 | 90 | 4 | 4 | 162 | 8 | 156 | 2.25e-26 | 98.6 |
| Msa0162220 | AT2G47710.1 | 32.727 | 165 | 98 | 3 | 2 | 165 | 7 | 159 | 3.78e-26 | 97.8 |
| Msa0162220 | AT1G68300.1 | 33.125 | 160 | 93 | 3 | 4 | 162 | 11 | 157 | 6.07e-24 | 92.4 |
| Msa0162220 | AT3G17020.1 | 31.677 | 161 | 100 | 2 | 4 | 162 | 8 | 160 | 1.17e-17 | 75.9 |
| Msa0162220 | AT3G01520.1 | 25.595 | 168 | 104 | 3 | 4 | 162 | 7 | 162 | 2.19e-17 | 75.5 |
| Msa0162220 | AT3G03270.2 | 31.214 | 173 | 82 | 4 | 5 | 162 | 7 | 157 | 3.05e-17 | 74.7 |
| Msa0162220 | AT5G14680.1 | 26.190 | 168 | 103 | 3 | 4 | 162 | 7 | 162 | 3.74e-16 | 72.4 |
| Msa0162220 | AT1G11360.2 | 29.480 | 173 | 102 | 4 | 2 | 166 | 37 | 197 | 5.00e-14 | 67.8 |
| Msa0162220 | AT1G11360.1 | 29.480 | 173 | 102 | 4 | 2 | 166 | 37 | 197 | 5.00e-14 | 67.8 |
| Msa0162220 | AT1G11360.4 | 29.480 | 173 | 102 | 4 | 2 | 166 | 37 | 197 | 5.00e-14 | 67.8 |
| Msa0162220 | AT1G11360.3 | 29.480 | 173 | 102 | 4 | 2 | 166 | 37 | 197 | 5.00e-14 | 67.8 |
| Msa0162220 | AT3G53990.1 | 26.190 | 168 | 99 | 3 | 7 | 165 | 9 | 160 | 1.06e-12 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTATGTGCACCCTAT+TGG | 0.235333 | 1_4:-38697203 | Msa0162220:CDS |
| GTGCACATAATTGTGGAAAA+TGG | 0.245181 | 1_4:+38697211 | None:intergenic |
| ATTTGGTGTAGAGCATTTCT+TGG | 0.338185 | 1_4:-38694620 | Msa0162220:intron |
| CCAGCACCACCTGGTCCAAT+AGG | 0.340944 | 1_4:+38697188 | None:intergenic |
| AATCATGGGTAGCCGTGGCC+TGG | 0.369904 | 1_4:-38695551 | Msa0162220:CDS |
| CCTATTGGACCAGGTGGTGC+TGG | 0.410297 | 1_4:-38697188 | Msa0162220:intron |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_4:-38695566 | Msa0162220:CDS |
| TTATCCAGCATCTGTGGTTG+TGG | 0.413861 | 1_4:-38696890 | Msa0162220:CDS |
| GCCTGACAAATCATTTCCCT+TGG | 0.420407 | 1_4:+38695601 | None:intergenic |
| ATCATGGGTAGCCGTGGCCT+GGG | 0.449797 | 1_4:-38695550 | Msa0162220:CDS |
| CCCAAGGGAAATGATTTGTC+AGG | 0.453085 | 1_4:-38695602 | Msa0162220:CDS |
| TGCACATAATTGTGGAAAAT+GGG | 0.455217 | 1_4:+38697212 | None:intergenic |
| TAACTGCTGATCTTTCTTGC+TGG | 0.457940 | 1_4:+38696851 | None:intergenic |
| GCAGAAAGTGTAATTCTCAA+TGG | 0.481801 | 1_4:-38695628 | Msa0162220:CDS |
| GAATCCACAACCACAGATGC+TGG | 0.485403 | 1_4:+38696886 | None:intergenic |
| AGGAACATCATCTGAAAATG+AGG | 0.493972 | 1_4:-38697261 | Msa0162220:CDS |
| GTGGCCTGGGCACACTCAAA+AGG | 0.501846 | 1_4:-38695537 | Msa0162220:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1_4:-38696812 | Msa0162220:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_4:+38694560 | None:intergenic |
| CCTGACAAATCATTTCCCTT+GGG | 0.505400 | 1_4:+38695602 | None:intergenic |
| TTCAGATGATGTTCCTTCCA+TGG | 0.510145 | 1_4:+38697268 | None:intergenic |
| AGAGAGAAGGATGAAGATGA+AGG | 0.511016 | 1_4:-38697372 | None:intergenic |
| ATCAGCAGTTATTCTTTCGC+GGG | 0.511531 | 1_4:-38696839 | Msa0162220:CDS |
| CAGCACCACCTGGTCCAATA+GGG | 0.517598 | 1_4:+38697189 | None:intergenic |
| TAAAGTTGAAGAGATTATCA+AGG | 0.517712 | 1_4:+38697297 | None:intergenic |
| ATCATCTGAAAATGAGGGAA+TGG | 0.523826 | 1_4:-38697255 | Msa0162220:CDS |
| GATCAGCAGTTATTCTTTCG+CGG | 0.533226 | 1_4:-38696840 | Msa0162220:CDS |
| CTTCAACTTTATGACTGCCA+TGG | 0.538211 | 1_4:-38697285 | Msa0162220:CDS |
| CTCTTAATCATGGGTAGCCG+TGG | 0.547180 | 1_4:-38695556 | Msa0162220:CDS |
| CAATAGGGTGCACATAATTG+TGG | 0.554577 | 1_4:+38697204 | None:intergenic |
| GCGGGCTTTGCAAATGTGCA+AGG | 0.556519 | 1_4:-38696821 | Msa0162220:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_4:-38695565 | Msa0162220:CDS |
| AACTTTATGACTGCCATGGA+AGG | 0.559729 | 1_4:-38697281 | Msa0162220:CDS |
| GGAACATCATCTGAAAATGA+GGG | 0.582944 | 1_4:-38697260 | Msa0162220:CDS |
| AAAGTTGAAGAGATTATCAA+GGG | 0.605580 | 1_4:+38697298 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_4:-38697363 | Msa0162220:CDS |
| TAATTCTCAATGGAGACCCA+AGG | 0.620896 | 1_4:-38695618 | Msa0162220:CDS |
| GTTGTGGATTCAGTGAAGAA+AGG | 0.627405 | 1_4:-38696874 | Msa0162220:CDS |
| AGATACGAACCAGCACCACC+TGG | 0.633023 | 1_4:+38697179 | None:intergenic |
| TATGTGCACCCTATTGGACC+AGG | 0.634058 | 1_4:-38697197 | Msa0162220:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_4:-38697366 | None:intergenic |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_4:-38697344 | Msa0162220:CDS |
| AATTCTCAATGGAGACCCAA+GGG | 0.664861 | 1_4:-38695617 | Msa0162220:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_4:-38694555 | Msa0162220:CDS |
| GTGCACCCTATTGGACCAGG+TGG | 0.681996 | 1_4:-38697194 | Msa0162220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTGATATTTTCAA+TGG | + | chr1_4:38695755-38695774 | None:intergenic | 10.0% |
| !! | TAAAAAAAGCAAAAAAATTT+GGG | - | chr1_4:38696049-38696068 | Msa0162220:intron | 10.0% |
| !! | AAATGATAAAAATTAAAAGA+TGG | + | chr1_4:38696126-38696145 | None:intergenic | 10.0% |
| !!! | CATATTTTCTATTTTTTTTA+GGG | - | chr1_4:38696413-38696432 | Msa0162220:intron | 10.0% |
| !!! | AATATGAATTTTTAGATTTT+TGG | - | chr1_4:38696667-38696686 | Msa0162220:intron | 10.0% |
| !! | GATAATTTGATATATTTATA+GGG | - | chr1_4:38696888-38696907 | Msa0162220:CDS | 10.0% |
| !! | ATAATTTGATATATTTATAG+GGG | - | chr1_4:38696889-38696908 | Msa0162220:CDS | 10.0% |
| !! | AATCCTTAAAAAAATAATCT+GGG | + | chr1_4:38695341-38695360 | None:intergenic | 15.0% |
| !!! | GTCAAATTTTTCTTATAAAT+AGG | + | chr1_4:38695599-38695618 | None:intergenic | 15.0% |
| !!! | TAATCAAATGTTTTCAATTT+CGG | + | chr1_4:38695817-38695836 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTTAGTTGCATT+AGG | - | chr1_4:38695833-38695852 | Msa0162220:intron | 15.0% |
| !! | AAAAGAATAATAAAAGAACA+AGG | + | chr1_4:38695885-38695904 | None:intergenic | 15.0% |
| !!! | TATGAGAAATACTATTTTTT+AGG | - | chr1_4:38695974-38695993 | Msa0162220:intron | 15.0% |
| !!! | ATGAGAAATACTATTTTTTA+GGG | - | chr1_4:38695975-38695994 | Msa0162220:intron | 15.0% |
| !! | GTAAAAAAAGCAAAAAAATT+TGG | - | chr1_4:38696048-38696067 | Msa0162220:intron | 15.0% |
| !!! | TTAATTTTTATCATTTGTGT+AGG | - | chr1_4:38696130-38696149 | Msa0162220:intron | 15.0% |
| !!! | AGTCCAAATTAATTTTATTT+GGG | - | chr1_4:38696153-38696172 | Msa0162220:intron | 15.0% |
| !! | CCTAAAAAAAATAGAAAATA+TGG | + | chr1_4:38696415-38696434 | None:intergenic | 15.0% |
| !!! | CCATATTTTCTATTTTTTTT+AGG | - | chr1_4:38696412-38696431 | Msa0162220:intron | 15.0% |
| !!! | TAAAAAAAATTCTACTTTTC+TGG | - | chr1_4:38696723-38696742 | Msa0162220:intron | 15.0% |
| !! | CGATAATTTGATATATTTAT+AGG | - | chr1_4:38696887-38696906 | Msa0162220:CDS | 15.0% |
| !! | TTTACTTAAATGAAAAAGAA+GGG | + | chr1_4:38696931-38696950 | None:intergenic | 15.0% |
| !!! | TTTTACTTAAATGAAAAAGA+AGG | + | chr1_4:38696932-38696951 | None:intergenic | 15.0% |
| !! | TAATAATTTAAAGGTAAGAT+TGG | + | chr1_4:38697057-38697076 | None:intergenic | 15.0% |
| !! | TTCAAAATGAATATCATTTA+AGG | + | chr1_4:38697201-38697220 | None:intergenic | 15.0% |
| !!! | TTCTAAAGAAAGATATTCAA+AGG | + | chr1_4:38694762-38694781 | None:intergenic | 20.0% |
| !! | AAATATCAAAATTGCTTAGT+CGG | + | chr1_4:38694850-38694869 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTATTTGAGTAG+AGG | + | chr1_4:38695135-38695154 | None:intergenic | 20.0% |
| !! | GAATCCTTAAAAAAATAATC+TGG | + | chr1_4:38695342-38695361 | None:intergenic | 20.0% |
| !! | AATTCGTATATTCAATTCAT+TGG | + | chr1_4:38695412-38695431 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTATAAATAGGAC+CGG | + | chr1_4:38695594-38695613 | None:intergenic | 20.0% |
| !! | CATTACATAAATAATGTATG+TGG | - | chr1_4:38695629-38695648 | Msa0162220:CDS | 20.0% |
| !! | GTCAAATTTCTCTTATAAAT+AGG | - | chr1_4:38695698-38695717 | Msa0162220:intron | 20.0% |
| !! | CTGAATCAATTAATTAGAAA+AGG | + | chr1_4:38695919-38695938 | None:intergenic | 20.0% |
| !!! | TGAGAAATACTATTTTTTAG+GGG | - | chr1_4:38695976-38695995 | Msa0162220:intron | 20.0% |
| !!! | GAGTCCAAATTAATTTTATT+TGG | - | chr1_4:38696152-38696171 | Msa0162220:intron | 20.0% |
| !!! | GTCCAAATTAATTTTATTTG+GGG | - | chr1_4:38696154-38696173 | Msa0162220:intron | 20.0% |
| !! | TACCCCAAATAAAATTAATT+TGG | + | chr1_4:38696159-38696178 | None:intergenic | 20.0% |
| !!! | AGTTGAAGAAATTTGTTATA+AGG | + | chr1_4:38696489-38696508 | None:intergenic | 20.0% |
| !!! | ATGAAAATAGAAAACTTTTG+AGG | + | chr1_4:38696518-38696537 | None:intergenic | 20.0% |
| !!! | ATGAATTTTTAGATTTTTGG+AGG | - | chr1_4:38696670-38696689 | Msa0162220:intron | 20.0% |
| !!! | AAAATAGTCTTGTTACATAT+TGG | + | chr1_4:38697120-38697139 | None:intergenic | 20.0% |
| !!! | ATATTCATTTTGAAACGAAA+AGG | - | chr1_4:38697207-38697226 | Msa0162220:CDS | 20.0% |
| !!! | TATTCATTTTGAAACGAAAA+GGG | - | chr1_4:38697208-38697227 | Msa0162220:CDS | 20.0% |
| !!! | TATTGATTTTGGTTTCATTT+TGG | - | chr1_4:38697231-38697250 | Msa0162220:CDS | 20.0% |
| !!! | ATTACCCTTTTTTCTATATT+TGG | - | chr1_4:38697260-38697279 | Msa0162220:CDS | 20.0% |
| !! | TACACCAAATATAGAAAAAA+GGG | + | chr1_4:38697267-38697286 | None:intergenic | 20.0% |
| ! | AAAGTTGAAGAGATTATCAA+GGG | + | chr1_4:38694602-38694621 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAGAGATTATCA+AGG | + | chr1_4:38694603-38694622 | None:intergenic | 25.0% |
| ! | AAAGATATTCAAAGGAGATA+AGG | + | chr1_4:38694754-38694773 | None:intergenic | 25.0% |
| ! | GTTGAAGTGATAAAATATTG+AGG | + | chr1_4:38694981-38695000 | None:intergenic | 25.0% |
| !! | TTGAGTTTGGATTTTATCAT+AGG | - | chr1_4:38695297-38695316 | Msa0162220:intron | 25.0% |
| !! | TGAGTTTGGATTTTATCATA+GGG | - | chr1_4:38695298-38695317 | Msa0162220:intron | 25.0% |
| !!! | TGTCCCAGATTATTTTTTTA+AGG | - | chr1_4:38695335-38695354 | Msa0162220:intron | 25.0% |
| ! | GGTGTAATTGAAGAAAATAA+GGG | + | chr1_4:38695456-38695475 | None:intergenic | 25.0% |
| !!! | TGTTTTGACAACTAACTAAT+AGG | + | chr1_4:38695542-38695561 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr1_4:38695703-38695722 | Msa0162220:intron | 25.0% |
| !!! | GATATTTTCAATGGTTTGTT+GGG | + | chr1_4:38695746-38695765 | None:intergenic | 25.0% |
| !!! | TGATATTTTCAATGGTTTGT+TGG | + | chr1_4:38695747-38695766 | None:intergenic | 25.0% |
| !! | ATGAACATTTTCACTAGATT+TGG | + | chr1_4:38696230-38696249 | None:intergenic | 25.0% |
| ! | TCTAGTGAAAATGTTCATTA+TGG | - | chr1_4:38696232-38696251 | Msa0162220:intron | 25.0% |
| ! | AGGACTAAAACGAAAAAAAT+CGG | + | chr1_4:38696469-38696488 | None:intergenic | 25.0% |
| !! | TACATGAGTTGACTTAAAAA+TGG | - | chr1_4:38696795-38696814 | Msa0162220:intron | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+GGG | - | chr1_4:38696796-38696815 | Msa0162220:intron | 25.0% |
| !! | AAATTTTCAATCACCACTTT+TGG | + | chr1_4:38696824-38696843 | None:intergenic | 25.0% |
| ! | TGAAAAAGAAGGGTTAAATA+TGG | + | chr1_4:38696921-38696940 | None:intergenic | 25.0% |
| !! | AATTGAAGTACTAACAAACT+TGG | - | chr1_4:38696967-38696986 | Msa0162220:intron | 25.0% |
| ! | TAAAGGTAAGATTGGAAAAA+AGG | + | chr1_4:38697049-38697068 | None:intergenic | 25.0% |
| !! | CATTTTCCATTATGATACTT+TGG | + | chr1_4:38697095-38697114 | None:intergenic | 25.0% |
| ! | CTACACCAAATATAGAAAAA+AGG | + | chr1_4:38697268-38697287 | None:intergenic | 25.0% |
| ! | AAGCTTTTATGCTCTTAAGT+GGG | - | chr1_4:38694576-38694595 | Msa0162220:CDS | 30.0% |
| TGCACATAATTGTGGAAAAT+GGG | + | chr1_4:38694688-38694707 | None:intergenic | 30.0% | |
| ATTAAATGGATCACTTCAAG+TGG | - | chr1_4:38695247-38695266 | Msa0162220:intron | 30.0% | |
| ! | CAAGTGGTTAATATGTTTTG+AGG | - | chr1_4:38695263-38695282 | Msa0162220:intron | 30.0% |
| GGGTGTAATTGAAGAAAATA+AGG | + | chr1_4:38695457-38695476 | None:intergenic | 30.0% | |
| !!! | ATTACACCCTTTGTTTTTCT+TGG | - | chr1_4:38695468-38695487 | Msa0162220:intron | 30.0% |
| CTTTGACCAAGAAAAACAAA+GGG | + | chr1_4:38695477-38695496 | None:intergenic | 30.0% | |
| TAGATCAATTACCCATTATC+TGG | + | chr1_4:38695500-38695519 | None:intergenic | 30.0% | |
| ATGGGTAATTGATCTACAAA+TGG | - | chr1_4:38695504-38695523 | Msa0162220:intron | 30.0% | |
| ! | GAAGTATTTGTTAGGGTATA+GGG | + | chr1_4:38695569-38695588 | None:intergenic | 30.0% |
| TCAATTTCGGAAAACATGAT+GGG | + | chr1_4:38695804-38695823 | None:intergenic | 30.0% | |
| TTCAATTTCGGAAAACATGA+TGG | + | chr1_4:38695805-38695824 | None:intergenic | 30.0% | |
| !! | GGTATGATTTGTGTGTTTTA+GGG | + | chr1_4:38695864-38695883 | None:intergenic | 30.0% |
| !! | AGGTATGATTTGTGTGTTTT+AGG | + | chr1_4:38695865-38695884 | None:intergenic | 30.0% |
| ! | TTAAGAAGAGAGTATATACG+TGG | + | chr1_4:38696193-38696212 | None:intergenic | 30.0% |
| AATGTTCATTATGGAATTGC+AGG | - | chr1_4:38696241-38696260 | Msa0162220:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_4:38696332-38696351 | Msa0162220:intron | 30.0% |
| CACATGAGTTTACTTAAAAG+AGG | + | chr1_4:38696548-38696567 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTTAAAAATG+GGG | - | chr1_4:38696797-38696816 | Msa0162220:intron | 30.0% |
| TTATAGAGACTAAAAGCTGA+AGG | - | chr1_4:38696843-38696862 | Msa0162220:CDS | 30.0% | |
| ! | AAGCTGAAGGAAAATTTTCA+AGG | - | chr1_4:38696856-38696875 | Msa0162220:CDS | 30.0% |
| ! | AGCTGAAGGAAAATTTTCAA+GGG | - | chr1_4:38696857-38696876 | Msa0162220:CDS | 30.0% |
| !!! | GACATTCATTTTAAAACCGT+GGG | + | chr1_4:38696997-38697016 | None:intergenic | 30.0% |
| !!! | TGACATTCATTTTAAAACCG+TGG | + | chr1_4:38696998-38697017 | None:intergenic | 30.0% |
| ! | CAACTTCCAAAGTATCATAA+TGG | - | chr1_4:38697086-38697105 | Msa0162220:intron | 30.0% |
| !!! | AACGAAAAGGGTATTGATTT+TGG | - | chr1_4:38697220-38697239 | Msa0162220:CDS | 30.0% |
| !!! | TTTTGGTTTCATTTTGGTGA+TGG | - | chr1_4:38697237-38697256 | Msa0162220:CDS | 30.0% |
| ! | GAAGCTTTTATGCTCTTAAG+TGG | - | chr1_4:38694575-38694594 | Msa0162220:CDS | 35.0% |
| AGGAACATCATCTGAAAATG+AGG | - | chr1_4:38694636-38694655 | Msa0162220:intron | 35.0% | |
| GGAACATCATCTGAAAATGA+GGG | - | chr1_4:38694637-38694656 | Msa0162220:intron | 35.0% | |
| ATCATCTGAAAATGAGGGAA+TGG | - | chr1_4:38694642-38694661 | Msa0162220:intron | 35.0% | |
| GTGCACATAATTGTGGAAAA+TGG | + | chr1_4:38694689-38694708 | None:intergenic | 35.0% | |
| GCTTTGACCAAGAAAAACAA+AGG | + | chr1_4:38695478-38695497 | None:intergenic | 35.0% | |
| !! | GGAAGTATTTGTTAGGGTAT+AGG | + | chr1_4:38695570-38695589 | None:intergenic | 35.0% |
| TTTCTTATAAATAGGACCGG+AGG | + | chr1_4:38695591-38695610 | None:intergenic | 35.0% | |
| !! | TCAATGGTTTGTTGGGATTA+GGG | + | chr1_4:38695739-38695758 | None:intergenic | 35.0% |
| !! | TTCAATGGTTTGTTGGGATT+AGG | + | chr1_4:38695740-38695759 | None:intergenic | 35.0% |
| TTTCTCATATGTCTTGCCTT+GGG | + | chr1_4:38695963-38695982 | None:intergenic | 35.0% | |
| ATTTCTCATATGTCTTGCCT+TGG | + | chr1_4:38695964-38695983 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTAATTCTCAA+TGG | - | chr1_4:38696269-38696288 | Msa0162220:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_4:38696331-38696350 | Msa0162220:intron | 35.0% |
| TTAAAAATGGGGACCAAAAG+TGG | - | chr1_4:38696808-38696827 | Msa0162220:intron | 35.0% | |
| !! | ATTTGGTGTAGAGCATTTCT+TGG | - | chr1_4:38697277-38697296 | Msa0162220:CDS | 35.0% |
| CTTCAACTTTATGACTGCCA+TGG | - | chr1_4:38694612-38694631 | Msa0162220:CDS | 40.0% | |
| AACTTTATGACTGCCATGGA+AGG | - | chr1_4:38694616-38694635 | Msa0162220:intron | 40.0% | |
| TTCAGATGATGTTCCTTCCA+TGG | + | chr1_4:38694632-38694651 | None:intergenic | 40.0% | |
| CAATAGGGTGCACATAATTG+TGG | + | chr1_4:38694696-38694715 | None:intergenic | 40.0% | |
| CACAATTATGTGCACCCTAT+TGG | - | chr1_4:38694694-38694713 | Msa0162220:intron | 40.0% | |
| ! | GTGCGTTGAATTGAGACTTT+TGG | - | chr1_4:38694872-38694891 | Msa0162220:intron | 40.0% |
| ! | AGCTTTTTATCCAGCATCTG+TGG | - | chr1_4:38695001-38695020 | Msa0162220:intron | 40.0% |
| GTTGTGGATTCAGTGAAGAA+AGG | - | chr1_4:38695023-38695042 | Msa0162220:intron | 40.0% | |
| TAACTGCTGATCTTTCTTGC+TGG | + | chr1_4:38695049-38695068 | None:intergenic | 40.0% | |
| GATCAGCAGTTATTCTTTCG+CGG | - | chr1_4:38695057-38695076 | Msa0162220:intron | 40.0% | |
| ATCAGCAGTTATTCTTTCGC+GGG | - | chr1_4:38695058-38695077 | Msa0162220:intron | 40.0% | |
| GAGTAGAGGAAAGCGAAATT+AGG | + | chr1_4:38695121-38695140 | None:intergenic | 40.0% | |
| GGTGCTCAAGAAATTGAGTT+TGG | - | chr1_4:38695284-38695303 | Msa0162220:intron | 40.0% | |
| TCTTGGTCAAAGCCAGATAA+TGG | - | chr1_4:38695485-38695504 | Msa0162220:intron | 40.0% | |
| CTTGGTCAAAGCCAGATAAT+GGG | - | chr1_4:38695486-38695505 | Msa0162220:intron | 40.0% | |
| ACCCTAACAAATACTTCCTC+CGG | - | chr1_4:38695572-38695591 | Msa0162220:CDS | 40.0% | |
| !! | ACCGGAGGAAGTATTTGTTA+GGG | + | chr1_4:38695576-38695595 | None:intergenic | 40.0% |
| GGATTAGGGTATACTTCATC+CGG | + | chr1_4:38695725-38695744 | None:intergenic | 40.0% | |
| !! | GGTGGATGCGATTTTTGAAA+GGG | + | chr1_4:38695778-38695797 | None:intergenic | 40.0% |
| ! | TTCGGAAAACATGATGGGAT+GGG | + | chr1_4:38695799-38695818 | None:intergenic | 40.0% |
| ! | TTTCGGAAAACATGATGGGA+TGG | + | chr1_4:38695800-38695819 | None:intergenic | 40.0% |
| TAATTCTCAATGGAGACCCA+AGG | - | chr1_4:38696279-38696298 | Msa0162220:intron | 40.0% | |
| AATTCTCAATGGAGACCCAA+GGG | - | chr1_4:38696280-38696299 | Msa0162220:intron | 40.0% | |
| CCTGACAAATCATTTCCCTT+GGG | + | chr1_4:38696298-38696317 | None:intergenic | 40.0% | |
| TAACAAACTTGGTACTCCCA+CGG | - | chr1_4:38696978-38696997 | Msa0162220:intron | 40.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_4:38694553-38694572 | Msa0162220:CDS | 45.0% | |
| TTAGTCGGACAATGTGATCC+GGG | + | chr1_4:38694835-38694854 | None:intergenic | 45.0% | |
| CTTAGTCGGACAATGTGATC+CGG | + | chr1_4:38694836-38694855 | None:intergenic | 45.0% | |
| TTATCCAGCATCTGTGGTTG+TGG | - | chr1_4:38695007-38695026 | Msa0162220:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_4:38695085-38695104 | Msa0162220:intron | 45.0% | |
| !! | GACCGGAGGAAGTATTTGTT+AGG | + | chr1_4:38695577-38695596 | None:intergenic | 45.0% |
| ! | GGGTGGATGCGATTTTTGAA+AGG | + | chr1_4:38695779-38695798 | None:intergenic | 45.0% |
| TCATATGTCTTGCCTTGGGT+GGG | + | chr1_4:38695959-38695978 | None:intergenic | 45.0% | |
| ! | CCCAAGGGAAATGATTTGTC+AGG | - | chr1_4:38696295-38696314 | Msa0162220:intron | 45.0% |
| GCCTGACAAATCATTTCCCT+TGG | + | chr1_4:38696299-38696318 | None:intergenic | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_4:38697340-38697359 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_4:38697358-38697377 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_4:38697361-38697380 | None:intergenic | 45.0% |
| !! | TGAAATTAAATTAAATTAAA+TGG | - | chr1_4:38695233-38695252 | Msa0162220:intron | 5.0% |
| !! | AGAATAAAAAAAATTAAATT+TGG | + | chr1_4:38695364-38695383 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTATTTTT+GGG | + | chr1_4:38696631-38696650 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTATTTT+TGG | + | chr1_4:38696632-38696651 | None:intergenic | 5.0% |
| !! | TATTCATAATAATAATTTAA+AGG | + | chr1_4:38697066-38697085 | None:intergenic | 5.0% |
| TATGTGCACCCTATTGGACC+AGG | - | chr1_4:38694700-38694719 | Msa0162220:intron | 50.0% | |
| ATGACCACGACGCACATAAG+TGG | - | chr1_4:38694792-38694811 | Msa0162220:intron | 50.0% | |
| GCACATAAGTGGAGGAGTCA+GGG | - | chr1_4:38694803-38694822 | Msa0162220:intron | 50.0% | |
| GAATCCACAACCACAGATGC+TGG | + | chr1_4:38695014-38695033 | None:intergenic | 50.0% | |
| ! | GGAAAACATGATGGGATGGG+TGG | + | chr1_4:38695796-38695815 | None:intergenic | 50.0% |
| ! | GGTGGGTTCACTTCTCAAGT+GGG | + | chr1_4:38695942-38695961 | None:intergenic | 50.0% |
| TTGAGAAGTGAACCCACCCA+AGG | - | chr1_4:38695944-38695963 | Msa0162220:intron | 50.0% | |
| CTCATATGTCTTGCCTTGGG+TGG | + | chr1_4:38695960-38695979 | None:intergenic | 50.0% | |
| CTCTTAATCATGGGTAGCCG+TGG | - | chr1_4:38696341-38696360 | Msa0162220:intron | 50.0% | |
| !! | CTAACCTTTTGAGTGTGCCC+AGG | + | chr1_4:38696367-38696386 | None:intergenic | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_4:38697342-38697361 | Msa0162220:CDS | 50.0% | |
| CAGCACCACCTGGTCCAATA+GGG | + | chr1_4:38694711-38694730 | None:intergenic | 55.0% | |
| AGATACGAACCAGCACCACC+TGG | + | chr1_4:38694721-38694740 | None:intergenic | 55.0% | |
| ACCACGACGCACATAAGTGG+AGG | - | chr1_4:38694795-38694814 | Msa0162220:intron | 55.0% | |
| TCCTCCACTTATGTGCGTCG+TGG | + | chr1_4:38694799-38694818 | None:intergenic | 55.0% | |
| CGCACATAAGTGGAGGAGTC+AGG | - | chr1_4:38694802-38694821 | Msa0162220:intron | 55.0% | |
| GCGGGCTTTGCAAATGTGCA+AGG | - | chr1_4:38695076-38695095 | Msa0162220:intron | 55.0% | |
| ! | GGGTGGGTTCACTTCTCAAG+TGG | + | chr1_4:38695943-38695962 | None:intergenic | 55.0% |
| !! | TTTTGAGTGTGCCCAGGCCA+CGG | + | chr1_4:38696361-38696380 | None:intergenic | 55.0% |
| GTGCACCCTATTGGACCAGG+TGG | - | chr1_4:38694703-38694722 | Msa0162220:intron | 60.0% | |
| CCAGCACCACCTGGTCCAAT+AGG | + | chr1_4:38694712-38694731 | None:intergenic | 60.0% | |
| CCTATTGGACCAGGTGGTGC+TGG | - | chr1_4:38694709-38694728 | Msa0162220:intron | 60.0% | |
| ! | GAGGAGTCAGGGTTCTGACC+CGG | - | chr1_4:38694814-38694833 | Msa0162220:intron | 60.0% |
| AATCATGGGTAGCCGTGGCC+TGG | - | chr1_4:38696346-38696365 | Msa0162220:intron | 60.0% | |
| ATCATGGGTAGCCGTGGCCT+GGG | - | chr1_4:38696347-38696366 | Msa0162220:intron | 60.0% | |
| GTGGCCTGGGCACACTCAAA+AGG | - | chr1_4:38696360-38696379 | Msa0162220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38694535 | 38697384 | 38694535 | ID=Msa0162220;Name=Msa0162220 |
| chr1_4 | mRNA | 38694535 | 38697384 | 38694535 | ID=Msa0162220-mRNA-1;Parent=Msa0162220;Name=Msa0162220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|171 |
| chr1_4 | exon | 38697189 | 38697384 | 38697189 | ID=Msa0162220-mRNA-1:exon:11326;Parent=Msa0162220-mRNA-1 |
| chr1_4 | exon | 38696813 | 38696916 | 38696813 | ID=Msa0162220-mRNA-1:exon:11325;Parent=Msa0162220-mRNA-1 |
| chr1_4 | exon | 38695538 | 38695656 | 38695538 | ID=Msa0162220-mRNA-1:exon:11324;Parent=Msa0162220-mRNA-1 |
| chr1_4 | exon | 38694535 | 38694631 | 38694535 | ID=Msa0162220-mRNA-1:exon:11323;Parent=Msa0162220-mRNA-1 |
| chr1_4 | CDS | 38697189 | 38697384 | 38697189 | ID=Msa0162220-mRNA-1:cds;Parent=Msa0162220-mRNA-1 |
| chr1_4 | CDS | 38696813 | 38696916 | 38696813 | ID=Msa0162220-mRNA-1:cds;Parent=Msa0162220-mRNA-1 |
| chr1_4 | CDS | 38695538 | 38695656 | 38695538 | ID=Msa0162220-mRNA-1:cds;Parent=Msa0162220-mRNA-1 |
| chr1_4 | CDS | 38694535 | 38694631 | 38694535 | ID=Msa0162220-mRNA-1:cds;Parent=Msa0162220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
