AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163360 MtrunA17_Chr2g0287651 42.960 696 378 6 89 779 63 744 0.0 584
Msa0163360 MtrunA17_Chr1g0203051 34.732 596 366 6 64 644 34 621 6.57e-118 375
Msa0163360 MtrunA17_Chr1g0202341 32.709 587 372 10 100 672 50 627 7.69e-97 320
Msa0163360 MtrunA17_Chr5g0448761 32.632 570 363 9 105 659 64 627 3.45e-94 316
Msa0163360 MtrunA17_Chr2g0324011 29.010 586 398 6 105 678 14 593 1.92e-85 287
Msa0163360 MtrunA17_Chr2g0296781 29.056 678 434 15 105 760 1 653 8.02e-84 286
Msa0163360 MtrunA17_Chr8g0363841 27.925 641 425 11 97 712 9 637 2.48e-83 283
Msa0163360 MtrunA17_Chr5g0441581 28.346 635 408 12 105 720 36 642 7.90e-83 282
Msa0163360 MtrunA17_Chr1g0198761 31.196 577 366 11 107 661 53 620 3.65e-80 277
Msa0163360 MtrunA17_Chr3g0082121 30.099 608 396 12 104 700 46 635 2.50e-79 273
Msa0163360 MtrunA17_Chr6g0477261 34.813 428 264 6 241 657 22 445 2.60e-78 269
Msa0163360 MtrunA17_Chr1g0203721 27.724 624 430 11 107 720 69 681 3.64e-76 268
Msa0163360 MtrunA17_Chr1g0207551 30.838 561 371 9 105 657 38 589 3.63e-75 264
Msa0163360 MtrunA17_Chr6g0458391 27.866 567 365 11 105 657 229 765 4.16e-72 254
Msa0163360 MtrunA17_Chr3g0080351 27.885 624 383 13 96 695 71 651 1.09e-71 254
Msa0163360 MtrunA17_Chr1g0196541 30.420 572 363 15 105 657 1 556 1.44e-69 246
Msa0163360 MtrunA17_Chr2g0329031 26.094 617 409 11 88 690 1 584 2.15e-69 246
Msa0163360 MtrunA17_Chr5g0440451 27.244 624 406 15 105 705 47 645 2.14e-65 238
Msa0163360 MtrunA17_Chr3g0118611 29.862 509 325 11 207 705 56 542 1.49e-64 233
Msa0163360 MtrunA17_Chr5g0448511 30.653 398 266 5 267 658 5 398 1.65e-64 228
Msa0163360 MtrunA17_Chr2g0276841 27.360 625 424 14 107 717 76 684 4.34e-63 227
Msa0163360 MtrunA17_Chr5g0431001 32.151 423 261 8 107 508 67 484 8.80e-63 221
Msa0163360 MtrunA17_Chr2g0290391 26.596 658 417 16 105 726 55 682 2.72e-61 222
Msa0163360 MtrunA17_Chr2g0291581 27.417 569 375 13 105 657 75 621 1.05e-59 217
Msa0163360 MtrunA17_Chr2g0287061 27.723 606 387 14 106 705 188 748 4.88e-59 217
Msa0163360 MtrunA17_Chr2g0291591 30.453 486 312 10 102 576 65 535 6.74e-58 209
Msa0163360 MtrunA17_Chr2g0294841 28.196 571 379 14 107 658 51 609 3.16e-57 211
Msa0163360 MtrunA17_Chr1g0164591 32.459 305 192 3 188 487 12 307 2.02e-50 181
Msa0163360 MtrunA17_Chr2g0308841 33.051 236 156 1 432 667 4 237 1.31e-38 145
Msa0163360 MtrunA17_Chr7g0258861 31.579 285 176 5 105 378 14 290 3.00e-37 142
Msa0163360 MtrunA17_Chr1g0149131 34.545 110 67 1 379 483 1 110 2.95e-16 76.3
Msa0163360 MtrunA17_Chr8g0340801 33.945 109 70 1 209 317 1 107 3.72e-14 69.7
Msa0163360 MtrunA17_Chr8g0389811 27.805 205 124 7 20 210 2 196 9.59e-12 65.5
Msa0163360 MtrunA17_Chr6g0451441 24.719 267 153 8 9 265 18 246 5.83e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163360 AT4G38180.1 31.902 652 414 14 23 661 4 638 4.47e-93 313
Msa0163360 AT4G15090.1 29.701 670 441 14 53 707 2 656 1.41e-85 294
Msa0163360 AT4G15090.5 29.701 670 441 14 53 707 2 656 1.41e-85 294
Msa0163360 AT4G15090.3 29.701 670 441 14 53 707 2 656 1.41e-85 294
Msa0163360 AT4G15090.2 29.701 670 441 14 53 707 2 656 1.41e-85 294
Msa0163360 AT4G15090.4 29.701 670 441 14 53 707 2 656 1.41e-85 294
Msa0163360 AT3G22170.2 27.145 711 444 17 29 716 17 676 1.68e-72 257
Msa0163360 AT3G22170.1 27.145 711 444 17 29 716 17 676 1.68e-72 257
Msa0163360 AT2G27110.2 26.147 654 416 14 59 699 14 613 1.29e-67 243
Msa0163360 AT2G27110.1 26.147 654 416 14 59 699 14 613 1.29e-67 243
Msa0163360 AT5G28530.1 28.423 577 381 11 107 663 61 625 5.27e-64 230
Msa0163360 AT3G06250.2 26.942 605 391 11 105 705 194 751 1.28e-63 230
Msa0163360 AT3G06250.1 26.942 605 391 11 105 705 194 751 1.28e-63 230
Msa0163360 AT3G06250.3 26.942 605 391 11 105 705 194 751 1.28e-63 230
Msa0163360 AT1G10240.2 27.244 635 412 13 107 717 54 662 3.79e-63 227
Msa0163360 AT1G10240.1 27.244 635 412 13 107 717 54 662 3.79e-63 227
Msa0163360 AT5G28530.3 28.250 577 378 12 107 663 61 621 7.80e-63 226
Msa0163360 AT5G28530.2 28.250 577 378 12 107 663 61 621 7.80e-63 226
Msa0163360 AT1G76320.2 27.051 573 375 13 105 660 1 547 1.46e-62 227
Msa0163360 AT1G76320.1 27.051 573 375 13 105 660 1 547 1.56e-62 227
Msa0163360 AT1G76320.4 27.051 573 375 13 105 660 1 547 1.56e-62 227
Msa0163360 AT1G76320.3 27.051 573 375 13 105 660 1 547 1.79e-62 225
Msa0163360 AT2G27110.3 30.324 432 281 7 274 699 51 468 2.47e-62 226
Msa0163360 AT4G19990.6 27.556 577 358 12 106 661 26 563 1.21e-61 225
Msa0163360 AT4G19990.2 27.556 577 358 12 106 661 26 563 1.21e-61 225
Msa0163360 AT4G19990.7 27.778 612 373 15 79 661 6 577 1.71e-61 224
Msa0163360 AT4G19990.3 27.903 577 356 13 106 661 26 563 1.73e-61 224
Msa0163360 AT4G19990.4 27.903 577 356 13 106 661 26 563 1.73e-61 224
Msa0163360 AT4G19990.5 27.556 577 358 12 106 661 26 563 1.80e-61 224
Msa0163360 AT1G80010.1 28.155 618 387 20 80 666 79 670 2.65e-61 223
Msa0163360 AT1G52520.1 27.431 576 379 13 105 662 89 643 3.81e-61 222
Msa0163360 AT5G18960.2 26.568 606 395 13 105 705 215 775 1.39e-59 219
Msa0163360 AT5G18960.1 26.568 606 395 13 105 705 215 775 1.39e-59 219
Msa0163360 AT4G19990.1 30.326 399 270 5 269 661 110 506 3.42e-59 216
Msa0163360 AT2G32250.8 26.742 617 366 14 105 697 1 555 8.91e-56 207
Msa0163360 AT2G32250.5 26.904 617 365 14 105 697 42 596 8.94e-56 207
Msa0163360 AT2G32250.6 26.904 617 365 14 105 697 42 596 9.15e-56 208
Msa0163360 AT2G32250.1 26.904 617 365 14 105 697 42 596 9.15e-56 208
Msa0163360 AT2G32250.3 26.904 617 365 14 105 697 42 596 9.15e-56 208
Msa0163360 AT2G32250.2 26.904 617 365 14 105 697 42 596 9.56e-56 208
Msa0163360 AT2G32250.4 26.904 617 365 14 105 697 42 596 9.56e-56 208
Msa0163360 AT2G32250.7 26.742 617 366 14 105 697 1 555 1.01e-55 207
Msa0163360 AT4G38170.1 28.337 427 277 9 306 716 45 458 5.74e-55 201
Msa0163360 AT5G28530.4 25.397 567 348 14 107 663 61 562 3.40e-43 167
Msa0163360 AT5G28530.5 25.044 567 346 14 107 663 61 558 4.55e-42 164

Find 173 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 1_4:+41504670 None:intergenic
CAAAGGCGATGCCTTGTATT+TGG 0.159430 1_4:+41506416 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 1_4:+41504907 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 1_4:+41505696 None:intergenic
TCACTCAATTTACGGTAATT+AGG 0.235603 1_4:+41506995 None:intergenic
CCCATAGTTTCTCAATGTTT+TGG 0.242135 1_4:+41504395 None:intergenic
TATCAACTTCACTCAATTTA+CGG 0.276736 1_4:+41506987 None:intergenic
ATCACTCGCAACAAATTTAC+TGG 0.280329 1_4:+41505443 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 1_4:+41506476 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 1_4:+41506637 None:intergenic
TAACACCATACCCAACATTA+TGG 0.313783 1_4:+41504719 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 1_4:-41506879 Msa0163360:CDS
CAGTGTTAGAATGTGATGAT+AGG 0.338987 1_4:+41504623 None:intergenic
TGATAAACCCAAGTCCTTCA+TGG 0.346028 1_4:+41506885 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.347376 1_4:-41507332 Msa0163360:CDS
ACCTATAGAAAGAACAAGTA+TGG 0.349144 1_4:-41506638 Msa0163360:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 1_4:-41507084 Msa0163360:CDS
ACACCAATTCCAGCAAGTTC+TGG 0.360337 1_4:+41505288 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 1_4:-41507339 Msa0163360:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 1_4:-41506743 Msa0163360:CDS
CTCGGAACATTGTGTGTTCC+AGG 0.370631 1_4:+41504574 None:intergenic
TAAGAGCGCAAGTGATTATA+AGG 0.371814 1_4:-41505544 Msa0163360:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 1_4:-41506683 Msa0163360:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 1_4:+41506255 None:intergenic
TGTAAGAACATGTCATATCT+TGG 0.387474 1_4:-41506933 Msa0163360:CDS
TGTTCTAATTGTAGAAATCC+TGG 0.392101 1_4:-41505330 Msa0163360:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 1_4:-41504682 Msa0163360:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 1_4:+41505725 None:intergenic
ACTGGAACACACAATGTTCC+TGG 0.398163 1_4:-41504592 Msa0163360:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 1_4:+41505416 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 1_4:-41504610 Msa0163360:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 1_4:-41506852 Msa0163360:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 1_4:-41506703 Msa0163360:CDS
GATTATAAGGAGGCTCTAGA+AGG 0.413898 1_4:-41505531 Msa0163360:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 1_4:+41505234 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 1_4:-41505026 Msa0163360:CDS
CAAGGCATCGCCTTTGCGCC+TGG 0.420887 1_4:-41506409 Msa0163360:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 1_4:-41504947 Msa0163360:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 1_4:-41505291 Msa0163360:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 1_4:-41505946 Msa0163360:CDS
TACGGTAATTAGGCATCAAA+TGG 0.442752 1_4:+41507005 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 1_4:+41507123 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 1_4:-41506893 Msa0163360:CDS
TAAATTTGTTGCGAGTGATA+AGG 0.460501 1_4:-41505439 Msa0163360:CDS
AAATGGACATGACGAGGATA+AGG 0.462491 1_4:-41505466 Msa0163360:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 1_4:+41506640 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 1_4:-41506932 Msa0163360:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 1_4:-41507197 Msa0163360:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 1_4:+41507032 None:intergenic
AGTGTTAGAATGTGATGATA+GGG 0.470693 1_4:+41504624 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 1_4:+41507137 None:intergenic
AATAGCCGTCATGAGGGAAA+TGG 0.477370 1_4:-41505483 Msa0163360:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 1_4:-41507379 Msa0163360:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 1_4:-41505297 Msa0163360:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 1_4:-41506861 Msa0163360:CDS
GAAATCCTGGGCACACAATA+CGG 0.497533 1_4:-41505317 Msa0163360:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 1_4:-41505069 Msa0163360:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 1_4:-41506476 Msa0163360:CDS
ATGTGAAGCGTGATTCTAAT+GGG 0.504223 1_4:-41507231 Msa0163360:CDS
AATGGTGTGACCCGTGACTT+TGG 0.505092 1_4:-41504790 Msa0163360:CDS
CCACGGGTTTGAAGCAAGAA+AGG 0.507111 1_4:-41507257 Msa0163360:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 1_4:-41506830 Msa0163360:CDS
GTATCACTATGTACATCAAA+AGG 0.509968 1_4:+41507598 None:intergenic
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 1_4:-41506899 Msa0163360:CDS
TTTGAGTTACTTCCAAGGTA+AGG 0.511685 1_4:-41506792 Msa0163360:CDS
TTAGAACAACATCTTGTCCT+TGG 0.513299 1_4:+41505345 None:intergenic
TGTGATGATAGGGTAGTTGT+CGG 0.517812 1_4:+41504634 None:intergenic
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 1_4:-41506295 Msa0163360:CDS
ATTTAGTCTGCAACTTGTCA+AGG 0.524883 1_4:+41505808 None:intergenic
CAAGGGTTAAAATACAAGAT+GGG 0.527779 1_4:-41506829 Msa0163360:CDS
AACAACGATGTTCGTACTGA+TGG 0.529175 1_4:-41507451 Msa0163360:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 1_4:-41505692 Msa0163360:CDS
GATGTGAAGCGTGATTCTAA+TGG 0.532287 1_4:-41507232 Msa0163360:CDS
GTTCTAATTGTAGAAATCCT+GGG 0.533951 1_4:-41505329 Msa0163360:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 1_4:+41505602 None:intergenic
CACGTCCGTATTGTGTGCCC+AGG 0.534840 1_4:+41505312 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 1_4:-41504946 Msa0163360:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 1_4:+41506391 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 1_4:+41504646 None:intergenic
TTTATCGGTTGAAGAGAATG+TGG 0.541414 1_4:-41506226 Msa0163360:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 1_4:-41506427 Msa0163360:CDS
AATAAGGAGGGTGTTAATGA+TGG 0.543414 1_4:-41507181 Msa0163360:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 1_4:-41504744 Msa0163360:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 1_4:+41507042 None:intergenic
TATCAGTATCAGCCTTACCT+TGG 0.546983 1_4:+41506780 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 1_4:+41505739 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 1_4:-41506475 Msa0163360:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 1_4:-41506259 Msa0163360:CDS
GATGCAAATGCCAGGCGCAA+AGG 0.554082 1_4:+41506399 None:intergenic
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 1_4:-41505642 Msa0163360:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 1_4:-41506294 Msa0163360:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 1_4:-41505025 Msa0163360:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 1_4:-41505270 Msa0163360:CDS
CGAGATGTTGAGAAAAGCAC+TGG 0.563759 1_4:-41505042 Msa0163360:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 1_4:+41505632 None:intergenic
GTCTGAAGATCAAGGGGAGA+AGG 0.567087 1_4:-41505262 Msa0163360:CDS
TATTGTTTGCAAAATACCAC+GGG 0.573778 1_4:-41507273 Msa0163360:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 1_4:+41505393 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 1_4:-41507415 Msa0163360:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 1_4:+41505747 None:intergenic
TGTGACAGATGATGATATAA+GGG 0.581249 1_4:-41507338 Msa0163360:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 1_4:-41505608 Msa0163360:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 1_4:-41505269 Msa0163360:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 1_4:+41507043 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 1_4:-41507194 Msa0163360:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 1_4:-41505607 Msa0163360:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 1_4:-41504730 Msa0163360:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 1_4:-41505490 Msa0163360:CDS
CCTTTCTTGCTTCAAACCCG+TGG 0.586062 1_4:+41507257 None:intergenic
AGGGTGGCCATGAAGGACTT+GGG 0.586883 1_4:-41506892 Msa0163360:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 1_4:-41505972 Msa0163360:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 1_4:-41505489 Msa0163360:CDS
ATACTCACCGGTGTATAACT+CGG 0.588936 1_4:+41504556 None:intergenic
ATGATAGGGTAGTTGTCGGA+GGG 0.591320 1_4:+41504638 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 1_4:-41506847 Msa0163360:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 1_4:-41504724 Msa0163360:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 1_4:+41505740 None:intergenic
TTATCGGTTGAAGAGAATGT+GGG 0.595180 1_4:-41506225 Msa0163360:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 1_4:-41504453 Msa0163360:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 1_4:-41505891 Msa0163360:CDS
GTATTGTTTGCAAAATACCA+CGG 0.599210 1_4:-41507274 Msa0163360:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 1_4:-41504729 Msa0163360:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 1_4:+41506008 None:intergenic
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 1_4:-41506301 Msa0163360:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 1_4:-41506828 Msa0163360:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 1_4:-41504419 Msa0163360:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 1_4:-41505530 Msa0163360:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 1_4:-41507541 Msa0163360:CDS
GCTACTTTGAGTTACTTCCA+AGG 0.617165 1_4:-41506797 Msa0163360:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 1_4:-41506971 Msa0163360:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 1_4:-41507536 Msa0163360:CDS
CATGTCCATTTCCCTCATGA+CGG 0.619225 1_4:+41505478 None:intergenic
GATGATAGGGTAGTTGTCGG+AGG 0.619255 1_4:+41504637 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 1_4:+41506585 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 1_4:-41505895 Msa0163360:CDS
ACATAGTGATACAGATGAGG+TGG 0.623452 1_4:-41507587 Msa0163360:CDS
CCACTGATGGTGAATGTCAA+AGG 0.624002 1_4:-41505393 Msa0163360:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 1_4:+41504737 None:intergenic
TTTCACGGATCATCAGGCAA+GGG 0.637022 1_4:-41506846 Msa0163360:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 1_4:-41506474 Msa0163360:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 1_4:-41506599 Msa0163360:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 1_4:-41506164 Msa0163360:CDS
CATTGCAAACACCATTACCA+TGG 0.642035 1_4:+41507404 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 1_4:-41504679 Msa0163360:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 1_4:-41507397 Msa0163360:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 1_4:-41506956 Msa0163360:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 1_4:-41506537 Msa0163360:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 1_4:+41507019 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 1_4:-41505609 Msa0163360:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 1_4:-41506258 Msa0163360:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 1_4:-41507396 Msa0163360:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 1_4:-41505066 Msa0163360:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 1_4:-41507434 Msa0163360:CDS
ACACTGATAGTGATACAGAT+GGG 0.663559 1_4:-41507540 Msa0163360:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.668190 1_4:-41505268 Msa0163360:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 1_4:-41506538 Msa0163360:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 1_4:-41505727 Msa0163360:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 1_4:-41506489 Msa0163360:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 1_4:-41505383 Msa0163360:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 1_4:-41507193 Msa0163360:CDS
TGTAGACGCTTTGAACGTAG+AGG 0.677604 1_4:-41505774 Msa0163360:CDS
CAATGTTCCGAGTTATACAC+CGG 0.682160 1_4:-41504563 Msa0163360:intron
CATTTGACACTGCTACAGAG+TGG 0.682675 1_4:+41505070 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 1_4:-41505541 Msa0163360:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 1_4:-41505406 Msa0163360:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 1_4:-41507421 Msa0163360:CDS
TGAGGGAAATGGACATGACG+AGG 0.691164 1_4:-41505472 Msa0163360:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 1_4:-41507439 Msa0163360:CDS
ACATAGACTATTGAACGCAG+CGG 0.718507 1_4:+41505578 None:intergenic
CACTGATAGTGATACAGATG+GGG 0.724418 1_4:-41507539 Msa0163360:CDS
TGTACATAGTGATACAGATG+AGG 0.739686 1_4:-41507590 Msa0163360:CDS
AATTATGCAAGAAATCCACA+AGG 0.743577 1_4:+41506099 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 1_4:-41507317 Msa0163360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG - chr1_4:41506890-41506909 Msa0163360:CDS 15.0%
!!! AATTATTTTAATATGCACTA+TGG - chr1_4:41507334-41507353 Msa0163360:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG - chr1_4:41507335-41507354 Msa0163360:CDS 15.0%
!!! TCATAAACTGTTTTAAATAT+AGG + chr1_4:41507563-41507582 None:intergenic 15.0%
!! AAAGGACTTATATAATTTCA+CGG - chr1_4:41505170-41505189 Msa0163360:intron 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG - chr1_4:41506085-41506104 Msa0163360:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG - chr1_4:41506173-41506192 Msa0163360:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG - chr1_4:41507336-41507355 Msa0163360:CDS 20.0%
! GATGGAAAAAATAAGAAGAA+TGG - chr1_4:41504868-41504887 Msa0163360:intron 25.0%
! TATCAACTTCACTCAATTTA+CGG + chr1_4:41505047-41505066 None:intergenic 25.0%
! ATATCCACTAAAAATGACAA+GGG + chr1_4:41505424-41505443 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG + chr1_4:41505425-41505444 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG + chr1_4:41505466-41505485 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG - chr1_4:41505515-41505534 Msa0163360:CDS 25.0%
! GGTGGGTAAAAAAAATTTAT+CGG - chr1_4:41505790-41505809 Msa0163360:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG + chr1_4:41506081-41506100 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG - chr1_4:41506196-41506215 Msa0163360:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG + chr1_4:41506405-41506424 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG + chr1_4:41506406-41506425 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG + chr1_4:41507127-41507146 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG + chr1_4:41507160-41507179 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG - chr1_4:41507223-41507242 Msa0163360:CDS 25.0%
! TAAACAATCAAAATACTCAC+CGG + chr1_4:41507490-41507509 None:intergenic 25.0%
GTATCACTATGTACATCAAA+AGG + chr1_4:41504436-41504455 None:intergenic 30.0%
ATGTGACAGATGATGATATA+AGG - chr1_4:41504692-41504711 Msa0163360:CDS 30.0%
TGTGACAGATGATGATATAA+GGG - chr1_4:41504693-41504712 Msa0163360:CDS 30.0%
AGATGATGATATAAGGGATA+TGG - chr1_4:41504699-41504718 Msa0163360:CDS 30.0%
GTATTGTTTGCAAAATACCA+CGG - chr1_4:41504757-41504776 Msa0163360:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG - chr1_4:41504758-41504777 Msa0163360:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG - chr1_4:41504837-41504856 Msa0163360:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG - chr1_4:41504838-41504857 Msa0163360:intron 30.0%
TCACTCAATTTACGGTAATT+AGG + chr1_4:41505039-41505058 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG - chr1_4:41505098-41505117 Msa0163360:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG - chr1_4:41505099-41505118 Msa0163360:CDS 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG - chr1_4:41505110-41505129 Msa0163360:intron 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG - chr1_4:41505111-41505130 Msa0163360:intron 30.0%
ATATAATTTCACGGATCATC+AGG - chr1_4:41505179-41505198 Msa0163360:intron 30.0%
CAAGGGTTAAAATACAAGAT+GGG - chr1_4:41505202-41505221 Msa0163360:intron 30.0%
AAGGGTTAAAATACAAGATG+GGG - chr1_4:41505203-41505222 Msa0163360:intron 30.0%
GAGTTTACATTTACAGATGA+TGG - chr1_4:41505288-41505307 Msa0163360:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG - chr1_4:41505311-41505330 Msa0163360:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG + chr1_4:41505394-41505413 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG - chr1_4:41505393-41505412 Msa0163360:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG + chr1_4:41505397-41505416 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG + chr1_4:41505423-41505442 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG - chr1_4:41505493-41505512 Msa0163360:CDS 30.0%
AACAATAGAGACATACAAGT+GGG - chr1_4:41505494-41505513 Msa0163360:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG + chr1_4:41505541-41505560 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG - chr1_4:41505769-41505788 Msa0163360:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG + chr1_4:41505851-41505870 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG + chr1_4:41505935-41505954 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG - chr1_4:41506160-41506179 Msa0163360:CDS 30.0%
!! TAAATTTGTTGCGAGTGATA+AGG - chr1_4:41506592-41506611 Msa0163360:CDS 30.0%
ATCATTCGCAACAAATTTGT+TGG + chr1_4:41506618-41506637 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+TGG - chr1_4:41506701-41506720 Msa0163360:CDS 30.0%
GTTCTAATTGTAGAAATCCT+GGG - chr1_4:41506702-41506721 Msa0163360:CDS 30.0%
GATTCATTATCAGACTCAAT+AGG + chr1_4:41506800-41506819 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG - chr1_4:41507084-41507103 Msa0163360:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG - chr1_4:41507085-41507104 Msa0163360:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG + chr1_4:41507255-41507274 None:intergenic 30.0%
AAAACTGATCCACCATTATT+TGG + chr1_4:41507364-41507383 None:intergenic 30.0%
AGTGTTAGAATGTGATGATA+GGG + chr1_4:41507410-41507429 None:intergenic 30.0%
TGTACATAGTGATACAGATG+AGG - chr1_4:41504441-41504460 Msa0163360:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG - chr1_4:41504491-41504510 Msa0163360:intron 35.0%
GTGGAATTTAACCATGGTAA+TGG - chr1_4:41504616-41504635 Msa0163360:CDS 35.0%
ATGTGAAGCGTGATTCTAAT+GGG - chr1_4:41504800-41504819 Msa0163360:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG - chr1_4:41504834-41504853 Msa0163360:intron 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG - chr1_4:41504850-41504869 Msa0163360:intron 35.0%
ATCAAATGGACAAAACGCAA+AGG + chr1_4:41505015-41505034 None:intergenic 35.0%
TACGGTAATTAGGCATCAAA+TGG + chr1_4:41505029-41505048 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG - chr1_4:41505060-41505079 Msa0163360:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG - chr1_4:41505120-41505139 Msa0163360:intron 35.0%
AGGACTTGGGTTTATCAAAA+AGG - chr1_4:41505152-41505171 Msa0163360:intron 35.0%
GCAAGGGTTAAAATACAAGA+TGG - chr1_4:41505201-41505220 Msa0163360:intron 35.0%
! TTTGAGTTACTTCCAAGGTA+AGG - chr1_4:41505239-41505258 Msa0163360:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG - chr1_4:41505310-41505329 Msa0163360:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG + chr1_4:41505317-41505336 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG - chr1_4:41505348-41505367 Msa0163360:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG - chr1_4:41505417-41505436 Msa0163360:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG - chr1_4:41505432-41505451 Msa0163360:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG + chr1_4:41505452-41505471 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG - chr1_4:41505542-41505561 Msa0163360:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG - chr1_4:41505604-41505623 Msa0163360:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG + chr1_4:41505723-41505742 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG + chr1_4:41505732-41505751 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG - chr1_4:41505730-41505749 Msa0163360:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG - chr1_4:41505805-41505824 Msa0163360:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG - chr1_4:41505806-41505825 Msa0163360:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG - chr1_4:41506059-41506078 Msa0163360:CDS 35.0%
ATTTAGTCTGCAACTTGTCA+AGG + chr1_4:41506226-41506245 None:intergenic 35.0%
CTTCATGGCACAAATAATGT+GGG + chr1_4:41506294-41506313 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG + chr1_4:41506295-41506314 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG + chr1_4:41506309-41506328 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG - chr1_4:41506339-41506358 Msa0163360:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG - chr1_4:41506487-41506506 Msa0163360:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG - chr1_4:41506501-41506520 Msa0163360:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG - chr1_4:41506541-41506560 Msa0163360:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG - chr1_4:41506542-41506561 Msa0163360:CDS 35.0%
ATCACTCGCAACAAATTTAC+TGG + chr1_4:41506591-41506610 None:intergenic 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG + chr1_4:41506666-41506685 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG + chr1_4:41506667-41506686 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+TGG + chr1_4:41506689-41506708 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG + chr1_4:41506928-41506947 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG - chr1_4:41507175-41507194 Msa0163360:CDS 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG + chr1_4:41507254-41507273 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG - chr1_4:41507302-41507321 Msa0163360:CDS 35.0%
TAACACCATACCCAACATTA+TGG + chr1_4:41507315-41507334 None:intergenic 35.0%
CAGTGTTAGAATGTGATGAT+AGG + chr1_4:41507411-41507430 None:intergenic 35.0%
ACATAGTGATACAGATGAGG+TGG - chr1_4:41504444-41504463 Msa0163360:CDS 40.0%
! GACACTGATAGTGATACAGA+TGG - chr1_4:41504490-41504509 Msa0163360:intron 40.0%
! CACTGATAGTGATACAGATG+GGG - chr1_4:41504492-41504511 Msa0163360:intron 40.0%
AACAACGATGTTCGTACTGA+TGG - chr1_4:41504580-41504599 Msa0163360:CDS 40.0%
CATTGCAAACACCATTACCA+TGG + chr1_4:41504630-41504649 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG - chr1_4:41504634-41504653 Msa0163360:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG - chr1_4:41504635-41504654 Msa0163360:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG - chr1_4:41504652-41504671 Msa0163360:CDS 40.0%
GGATATGGAATTCAACACAG+AGG - chr1_4:41504714-41504733 Msa0163360:CDS 40.0%
GATGTGAAGCGTGATTCTAA+TGG - chr1_4:41504799-41504818 Msa0163360:intron 40.0%
TTCGAATGGTTAGCGTAGAT+CGG + chr1_4:41504897-41504916 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG + chr1_4:41504911-41504930 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG - chr1_4:41504947-41504966 Msa0163360:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG + chr1_4:41504991-41505010 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG + chr1_4:41504992-41505011 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG + chr1_4:41505002-41505021 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG - chr1_4:41505119-41505138 Msa0163360:intron 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG - chr1_4:41505123-41505142 Msa0163360:intron 40.0%
TGATAAACCCAAGTCCTTCA+TGG + chr1_4:41505149-41505168 None:intergenic 40.0%
! GCTACTTTGAGTTACTTCCA+AGG - chr1_4:41505234-41505253 Msa0163360:CDS 40.0%
TATCAGTATCAGCCTTACCT+TGG + chr1_4:41505254-41505273 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG - chr1_4:41505328-41505347 Msa0163360:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG + chr1_4:41505449-41505468 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG - chr1_4:41505556-41505575 Msa0163360:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG - chr1_4:41505557-41505576 Msa0163360:CDS 40.0%
AGTTTGAATCTGAGTGGAAG+AGG - chr1_4:41505736-41505755 Msa0163360:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG - chr1_4:41505737-41505756 Msa0163360:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG - chr1_4:41505772-41505791 Msa0163360:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG - chr1_4:41505773-41505792 Msa0163360:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG + chr1_4:41505779-41505798 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG - chr1_4:41505840-41505859 Msa0163360:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG - chr1_4:41505867-41505886 Msa0163360:CDS 40.0%
AGATGTCAAAAAGGCGATAG+AGG - chr1_4:41506094-41506113 Msa0163360:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG - chr1_4:41506136-41506155 Msa0163360:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG + chr1_4:41506287-41506306 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG - chr1_4:41506304-41506323 Msa0163360:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG + chr1_4:41506338-41506357 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG + chr1_4:41506402-41506421 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG - chr1_4:41506422-41506441 Msa0163360:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG - chr1_4:41506423-41506442 Msa0163360:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG + chr1_4:41506456-41506475 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG - chr1_4:41506500-41506519 Msa0163360:CDS 40.0%
AAATGGACATGACGAGGATA+AGG - chr1_4:41506565-41506584 Msa0163360:CDS 40.0%
GGAGTAAAAAGTCAACACCA+AGG - chr1_4:41506669-41506688 Msa0163360:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG - chr1_4:41507006-41507025 Msa0163360:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG + chr1_4:41507297-41507316 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG - chr1_4:41507301-41507320 Msa0163360:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG - chr1_4:41507307-41507326 Msa0163360:CDS 40.0%
TGTGATGATAGGGTAGTTGT+CGG + chr1_4:41507400-41507419 None:intergenic 40.0%
CAATGTTCCGAGTTATACAC+CGG - chr1_4:41507468-41507487 Msa0163360:CDS 40.0%
ATACTCACCGGTGTATAACT+CGG + chr1_4:41507478-41507497 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG - chr1_4:41507578-41507597 Msa0163360:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG - chr1_4:41507612-41507631 Msa0163360:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG - chr1_4:41504495-41504514 Msa0163360:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG - chr1_4:41504610-41504629 Msa0163360:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG - chr1_4:41505184-41505203 Msa0163360:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG - chr1_4:41505185-41505204 Msa0163360:intron 45.0%
! CCATCAGTAATCACCGCTTT+TGG + chr1_4:41505558-41505577 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG - chr1_4:41505555-41505574 Msa0163360:CDS 45.0%
CAAAGGCGATGCCTTGTATT+TGG + chr1_4:41505618-41505637 None:intergenic 45.0%
AGCATTTCGATGCAAATGCC+AGG + chr1_4:41505643-41505662 None:intergenic 45.0%
!!! CCACAAGGCTGTTTTTGTGT+CGG + chr1_4:41505920-41505939 None:intergenic 45.0%
GTCAATGCAGTTGTCAGCAT+AGG + chr1_4:41506026-41506045 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG - chr1_4:41506140-41506159 Msa0163360:CDS 45.0%
! TGTAGACGCTTTGAACGTAG+AGG - chr1_4:41506257-41506276 Msa0163360:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG - chr1_4:41506424-41506443 Msa0163360:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG - chr1_4:41506490-41506509 Msa0163360:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG - chr1_4:41506548-41506567 Msa0163360:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG + chr1_4:41506556-41506575 None:intergenic 45.0%
TGTTGCGAATGATCCACTGA+TGG - chr1_4:41506625-41506644 Msa0163360:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG + chr1_4:41506641-41506660 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG - chr1_4:41506638-41506657 Msa0163360:CDS 45.0%
GAAATCCTGGGCACACAATA+CGG - chr1_4:41506714-41506733 Msa0163360:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG - chr1_4:41506740-41506759 Msa0163360:CDS 45.0%
ACACCAATTCCAGCAAGTTC+TGG + chr1_4:41506746-41506765 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG - chr1_4:41506762-41506781 Msa0163360:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG - chr1_4:41506763-41506782 Msa0163360:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG + chr1_4:41506964-41506983 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG - chr1_4:41506962-41506981 Msa0163360:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG - chr1_4:41506965-41506984 Msa0163360:CDS 45.0%
! CGAGATGTTGAGAAAAGCAC+TGG - chr1_4:41506989-41507008 Msa0163360:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG - chr1_4:41507005-41507024 Msa0163360:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG - chr1_4:41507287-41507306 Msa0163360:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG - chr1_4:41507349-41507368 Msa0163360:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG - chr1_4:41507352-41507371 Msa0163360:CDS 45.0%
ATGATAGGGTAGTTGTCGGA+GGG + chr1_4:41507396-41507415 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG - chr1_4:41507421-41507440 Msa0163360:CDS 45.0%
ACTGGAACACACAATGTTCC+TGG - chr1_4:41507439-41507458 Msa0163360:CDS 45.0%
! CGTACTGATGGAGATGCAGA+CGG - chr1_4:41504592-41504611 Msa0163360:CDS 50.0%
CCTTTCTTGCTTCAAACCCG+TGG + chr1_4:41504777-41504796 None:intergenic 50.0%
! CCACGGGTTTGAAGCAAGAA+AGG - chr1_4:41504774-41504793 Msa0163360:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG - chr1_4:41505075-41505094 Msa0163360:CDS 50.0%
CCGACACAAAAACAGCCTTG+TGG - chr1_4:41505917-41505936 Msa0163360:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG - chr1_4:41506389-41506408 Msa0163360:CDS 50.0%
TGAGGGAAATGGACATGACG+AGG - chr1_4:41506559-41506578 Msa0163360:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG - chr1_4:41506648-41506667 Msa0163360:CDS 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG - chr1_4:41506761-41506780 Msa0163360:CDS 50.0%
GTCTGAAGATCAAGGGGAGA+AGG - chr1_4:41506769-41506788 Msa0163360:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG - chr1_4:41507241-41507260 Msa0163360:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG + chr1_4:41507388-41507407 None:intergenic 50.0%
GATGATAGGGTAGTTGTCGG+AGG + chr1_4:41507397-41507416 None:intergenic 50.0%
CTCGGAACATTGTGTGTTCC+AGG + chr1_4:41507460-41507479 None:intergenic 50.0%
TGATGGAGATGCAGACGGTG+TGG - chr1_4:41504597-41504616 Msa0163360:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG - chr1_4:41505132-41505151 Msa0163360:intron 55.0%
AAGGGTGGCCATGAAGGACT+TGG - chr1_4:41505138-41505157 Msa0163360:intron 55.0%
AGGGTGGCCATGAAGGACTT+GGG - chr1_4:41505139-41505158 Msa0163360:intron 55.0%
GATGCAAATGCCAGGCGCAA+AGG + chr1_4:41505635-41505654 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG + chr1_4:41506432-41506451 None:intergenic 55.0%
CACGTCCGTATTGTGTGCCC+AGG + chr1_4:41506722-41506741 None:intergenic 60.0%
CGGACGTGTCCAGAACTTGC+TGG - chr1_4:41506734-41506753 Msa0163360:CDS 60.0%
!! CAAGGCATCGCCTTTGCGCC+TGG - chr1_4:41505622-41505641 Msa0163360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41504406 41507647 41504406 ID=Msa0163360;Name=Msa0163360
chr1_4 mRNA 41504406 41507647 41504406 ID=Msa0163360-mRNA-1;Parent=Msa0163360;Name=Msa0163360-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.25|1|1|4|0|989
chr1_4 exon 41505221 41507647 41505221 ID=Msa0163360-mRNA-1:exon:11991;Parent=Msa0163360-mRNA-1
chr1_4 exon 41504903 41505124 41504903 ID=Msa0163360-mRNA-1:exon:11990;Parent=Msa0163360-mRNA-1
chr1_4 exon 41504564 41504812 41504564 ID=Msa0163360-mRNA-1:exon:11989;Parent=Msa0163360-mRNA-1
chr1_4 exon 41504406 41504477 41504406 ID=Msa0163360-mRNA-1:exon:11988;Parent=Msa0163360-mRNA-1
chr1_4 CDS 41505221 41507647 41505221 ID=Msa0163360-mRNA-1:cds;Parent=Msa0163360-mRNA-1
chr1_4 CDS 41504903 41505124 41504903 ID=Msa0163360-mRNA-1:cds;Parent=Msa0163360-mRNA-1
chr1_4 CDS 41504564 41504812 41504564 ID=Msa0163360-mRNA-1:cds;Parent=Msa0163360-mRNA-1
chr1_4 CDS 41504406 41504477 41504406 ID=Msa0163360-mRNA-1:cds;Parent=Msa0163360-mRNA-1
Gene Sequence

>Msa0163360

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTACATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTGTTTGCAAAATACCACGGGTTTGAAGCAAGAAAGGATGATGTGAAGCGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTATTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGTAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAACAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGTAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACGAGGATAAGGCCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCAAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTTTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTATCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCTGGAACACACAATGTTCCGAGTTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA
Protein sequence

>Msa0163360

MSTYSEATLPFDVHSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMEFNTEDEAIKFYVLFAKYHGFEARKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSIFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDEDKASKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTFKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVPGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH*