Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362300 | XP_039686204.1 | 67.166 | 734 | 215 | 6 | 67 | 792 | 10 | 725 | 0.0 | 1016 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362300 | sp|Q9SZL8|FRS5_ARATH | 31.424 | 646 | 420 | 12 | 33 | 665 | 3 | 638 | 9.78e-95 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362300 | A0A2K3L384 | 74.331 | 635 | 160 | 2 | 109 | 742 | 1 | 633 | 0.0 | 1001 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1362300 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1345310 | Msa1362300 | 0.831555 | 1.562522e-55 | -8.615850e-47 |
| Msa1362300 | Msa1372210 | 0.859712 | 3.421148e-63 | -8.615850e-47 |
| Msa1362300 | Msa1440090 | 0.884497 | 1.823358e-71 | -8.615850e-47 |
| Msa0759280 | Msa1362300 | 0.918955 | 8.221160e-87 | -8.615850e-47 |
| Msa0163360 | Msa1362300 | 0.847510 | 1.105021e-59 | -8.615850e-47 |
| Msa1336550 | Msa1362300 | 0.871884 | 4.861523e-67 | -8.615850e-47 |
| Msa0386350 | Msa1362300 | 0.894592 | 2.132409e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362300 | MtrunA17_Chr2g0287651 | 42.960 | 696 | 378 | 6 | 93 | 783 | 63 | 744 | 0.0 | 585 |
| Msa1362300 | MtrunA17_Chr1g0203051 | 34.564 | 596 | 367 | 6 | 68 | 648 | 34 | 621 | 2.13e-119 | 374 |
| Msa1362300 | MtrunA17_Chr1g0202341 | 32.709 | 587 | 372 | 10 | 104 | 676 | 50 | 627 | 6.53e-99 | 322 |
| Msa1362300 | MtrunA17_Chr5g0448761 | 32.632 | 570 | 363 | 9 | 109 | 663 | 64 | 627 | 3.24e-96 | 317 |
| Msa1362300 | MtrunA17_Chr2g0324011 | 29.195 | 596 | 404 | 6 | 99 | 682 | 4 | 593 | 1.06e-87 | 289 |
| Msa1362300 | MtrunA17_Chr2g0296781 | 29.204 | 678 | 433 | 15 | 109 | 764 | 1 | 653 | 6.07e-86 | 288 |
| Msa1362300 | MtrunA17_Chr8g0363841 | 28.169 | 639 | 422 | 11 | 101 | 714 | 9 | 635 | 6.79e-86 | 286 |
| Msa1362300 | MtrunA17_Chr5g0441581 | 28.346 | 635 | 408 | 12 | 109 | 724 | 36 | 642 | 2.72e-84 | 283 |
| Msa1362300 | MtrunA17_Chr1g0198761 | 28.977 | 704 | 448 | 14 | 111 | 784 | 53 | 734 | 5.72e-82 | 278 |
| Msa1362300 | MtrunA17_Chr3g0082121 | 30.099 | 608 | 396 | 12 | 108 | 704 | 46 | 635 | 1.50e-81 | 275 |
| Msa1362300 | MtrunA17_Chr6g0477261 | 34.813 | 428 | 264 | 6 | 245 | 661 | 22 | 445 | 4.01e-79 | 268 |
| Msa1362300 | MtrunA17_Chr1g0203721 | 27.885 | 624 | 429 | 11 | 111 | 724 | 69 | 681 | 1.51e-77 | 268 |
| Msa1362300 | MtrunA17_Chr1g0207551 | 30.769 | 559 | 374 | 8 | 109 | 661 | 38 | 589 | 8.48e-76 | 262 |
| Msa1362300 | MtrunA17_Chr6g0458391 | 28.042 | 567 | 364 | 11 | 109 | 661 | 229 | 765 | 1.68e-73 | 255 |
| Msa1362300 | MtrunA17_Chr3g0080351 | 27.581 | 620 | 390 | 12 | 100 | 699 | 71 | 651 | 1.97e-72 | 253 |
| Msa1362300 | MtrunA17_Chr1g0196541 | 30.594 | 572 | 362 | 15 | 109 | 661 | 1 | 556 | 2.02e-71 | 248 |
| Msa1362300 | MtrunA17_Chr2g0329031 | 26.094 | 617 | 409 | 11 | 92 | 694 | 1 | 584 | 4.35e-70 | 245 |
| Msa1362300 | MtrunA17_Chr5g0448511 | 30.653 | 398 | 266 | 5 | 271 | 662 | 5 | 398 | 8.26e-66 | 229 |
| Msa1362300 | MtrunA17_Chr5g0440451 | 28.103 | 580 | 376 | 14 | 109 | 665 | 47 | 608 | 1.16e-65 | 236 |
| Msa1362300 | MtrunA17_Chr3g0118611 | 29.862 | 509 | 325 | 11 | 211 | 709 | 56 | 542 | 1.81e-65 | 233 |
| Msa1362300 | MtrunA17_Chr2g0276841 | 27.492 | 622 | 421 | 14 | 111 | 718 | 76 | 681 | 9.18e-65 | 229 |
| Msa1362300 | MtrunA17_Chr5g0431001 | 32.151 | 423 | 261 | 8 | 111 | 512 | 67 | 484 | 4.00e-64 | 223 |
| Msa1362300 | MtrunA17_Chr2g0290391 | 26.362 | 679 | 433 | 17 | 88 | 730 | 35 | 682 | 3.62e-62 | 222 |
| Msa1362300 | MtrunA17_Chr2g0291581 | 27.592 | 569 | 374 | 13 | 109 | 661 | 75 | 621 | 2.73e-61 | 219 |
| Msa1362300 | MtrunA17_Chr2g0287061 | 27.723 | 606 | 387 | 14 | 110 | 709 | 188 | 748 | 1.32e-60 | 219 |
| Msa1362300 | MtrunA17_Chr2g0291591 | 30.453 | 486 | 312 | 10 | 106 | 580 | 65 | 535 | 3.44e-59 | 211 |
| Msa1362300 | MtrunA17_Chr2g0294841 | 27.846 | 571 | 381 | 13 | 111 | 662 | 51 | 609 | 2.37e-58 | 212 |
| Msa1362300 | MtrunA17_Chr1g0164591 | 32.459 | 305 | 192 | 3 | 192 | 491 | 12 | 307 | 7.81e-51 | 181 |
| Msa1362300 | MtrunA17_Chr2g0308841 | 33.051 | 236 | 156 | 1 | 436 | 671 | 4 | 237 | 2.01e-38 | 144 |
| Msa1362300 | MtrunA17_Chr7g0258861 | 31.488 | 289 | 179 | 5 | 109 | 386 | 14 | 294 | 5.05e-38 | 144 |
| Msa1362300 | MtrunA17_Chr1g0149131 | 34.545 | 110 | 67 | 1 | 383 | 487 | 1 | 110 | 2.29e-16 | 76.3 |
| Msa1362300 | MtrunA17_Chr8g0340801 | 33.945 | 109 | 70 | 1 | 213 | 321 | 1 | 107 | 3.00e-14 | 69.7 |
| Msa1362300 | MtrunA17_Chr6g0451441 | 25.600 | 250 | 170 | 6 | 31 | 269 | 2 | 246 | 3.93e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362300 | AT4G38180.1 | 31.424 | 646 | 420 | 12 | 33 | 665 | 3 | 638 | 9.94e-96 | 316 |
| Msa1362300 | AT4G15090.1 | 30.000 | 670 | 439 | 15 | 57 | 711 | 2 | 656 | 1.13e-86 | 293 |
| Msa1362300 | AT4G15090.5 | 30.000 | 670 | 439 | 15 | 57 | 711 | 2 | 656 | 1.13e-86 | 293 |
| Msa1362300 | AT4G15090.3 | 30.000 | 670 | 439 | 15 | 57 | 711 | 2 | 656 | 1.13e-86 | 293 |
| Msa1362300 | AT4G15090.2 | 30.000 | 670 | 439 | 15 | 57 | 711 | 2 | 656 | 1.13e-86 | 293 |
| Msa1362300 | AT4G15090.4 | 30.000 | 670 | 439 | 15 | 57 | 711 | 2 | 656 | 1.13e-86 | 293 |
| Msa1362300 | AT3G22170.2 | 26.744 | 688 | 440 | 14 | 56 | 720 | 30 | 676 | 2.50e-73 | 256 |
| Msa1362300 | AT3G22170.1 | 26.744 | 688 | 440 | 14 | 56 | 720 | 30 | 676 | 2.50e-73 | 256 |
| Msa1362300 | AT2G27110.2 | 26.147 | 654 | 416 | 14 | 63 | 703 | 14 | 613 | 9.62e-69 | 244 |
| Msa1362300 | AT2G27110.1 | 26.147 | 654 | 416 | 14 | 63 | 703 | 14 | 613 | 9.62e-69 | 244 |
| Msa1362300 | AT5G28530.1 | 28.250 | 577 | 382 | 11 | 111 | 667 | 61 | 625 | 1.27e-65 | 232 |
| Msa1362300 | AT3G06250.2 | 27.107 | 605 | 390 | 11 | 109 | 709 | 194 | 751 | 2.98e-65 | 232 |
| Msa1362300 | AT3G06250.1 | 27.107 | 605 | 390 | 11 | 109 | 709 | 194 | 751 | 2.98e-65 | 232 |
| Msa1362300 | AT3G06250.3 | 27.107 | 605 | 390 | 11 | 109 | 709 | 194 | 751 | 2.98e-65 | 232 |
| Msa1362300 | AT1G10240.2 | 27.373 | 632 | 409 | 13 | 111 | 718 | 54 | 659 | 1.02e-64 | 229 |
| Msa1362300 | AT1G10240.1 | 27.373 | 632 | 409 | 13 | 111 | 718 | 54 | 659 | 1.02e-64 | 229 |
| Msa1362300 | AT5G28530.3 | 28.076 | 577 | 379 | 12 | 111 | 667 | 61 | 621 | 2.22e-64 | 228 |
| Msa1362300 | AT5G28530.2 | 28.076 | 577 | 379 | 12 | 111 | 667 | 61 | 621 | 2.22e-64 | 228 |
| Msa1362300 | AT1G76320.3 | 27.051 | 573 | 375 | 13 | 109 | 664 | 1 | 547 | 2.70e-63 | 225 |
| Msa1362300 | AT2G27110.3 | 30.324 | 432 | 281 | 7 | 278 | 703 | 51 | 468 | 2.96e-63 | 226 |
| Msa1362300 | AT1G76320.1 | 27.434 | 565 | 383 | 12 | 109 | 664 | 1 | 547 | 4.64e-63 | 226 |
| Msa1362300 | AT1G76320.4 | 27.434 | 565 | 383 | 12 | 109 | 664 | 1 | 547 | 4.64e-63 | 226 |
| Msa1362300 | AT1G80010.1 | 28.155 | 618 | 387 | 20 | 84 | 670 | 79 | 670 | 5.03e-63 | 225 |
| Msa1362300 | AT1G52520.1 | 27.604 | 576 | 378 | 13 | 109 | 666 | 89 | 643 | 5.69e-63 | 225 |
| Msa1362300 | AT1G76320.2 | 27.434 | 565 | 383 | 12 | 109 | 664 | 1 | 547 | 5.76e-63 | 225 |
| Msa1362300 | AT4G19990.7 | 27.451 | 612 | 375 | 14 | 83 | 665 | 6 | 577 | 7.58e-63 | 226 |
| Msa1362300 | AT4G19990.5 | 27.556 | 577 | 358 | 12 | 110 | 665 | 26 | 563 | 1.29e-62 | 224 |
| Msa1362300 | AT4G19990.3 | 27.556 | 577 | 358 | 12 | 110 | 665 | 26 | 563 | 1.49e-62 | 224 |
| Msa1362300 | AT4G19990.4 | 27.556 | 577 | 358 | 12 | 110 | 665 | 26 | 563 | 1.49e-62 | 224 |
| Msa1362300 | AT4G19990.6 | 27.556 | 577 | 358 | 12 | 110 | 665 | 26 | 563 | 1.95e-62 | 224 |
| Msa1362300 | AT4G19990.2 | 27.556 | 577 | 358 | 12 | 110 | 665 | 26 | 563 | 1.95e-62 | 224 |
| Msa1362300 | AT5G18960.2 | 26.733 | 606 | 394 | 13 | 109 | 709 | 215 | 775 | 6.92e-61 | 220 |
| Msa1362300 | AT5G18960.1 | 26.733 | 606 | 394 | 13 | 109 | 709 | 215 | 775 | 6.92e-61 | 220 |
| Msa1362300 | AT4G19990.1 | 29.825 | 399 | 272 | 4 | 273 | 665 | 110 | 506 | 5.30e-60 | 216 |
| Msa1362300 | AT2G32250.5 | 26.904 | 617 | 365 | 14 | 109 | 701 | 42 | 596 | 1.18e-56 | 208 |
| Msa1362300 | AT2G32250.8 | 26.742 | 617 | 366 | 14 | 109 | 701 | 1 | 555 | 1.21e-56 | 208 |
| Msa1362300 | AT2G32250.2 | 26.742 | 617 | 366 | 14 | 109 | 701 | 42 | 596 | 1.30e-56 | 208 |
| Msa1362300 | AT2G32250.4 | 26.742 | 617 | 366 | 14 | 109 | 701 | 42 | 596 | 1.30e-56 | 208 |
| Msa1362300 | AT2G32250.6 | 26.742 | 617 | 366 | 14 | 109 | 701 | 42 | 596 | 1.30e-56 | 208 |
| Msa1362300 | AT2G32250.1 | 26.742 | 617 | 366 | 14 | 109 | 701 | 42 | 596 | 1.30e-56 | 208 |
| Msa1362300 | AT2G32250.3 | 26.742 | 617 | 366 | 14 | 109 | 701 | 42 | 596 | 1.30e-56 | 208 |
| Msa1362300 | AT2G32250.7 | 26.742 | 617 | 366 | 14 | 109 | 701 | 1 | 555 | 1.32e-56 | 208 |
| Msa1362300 | AT4G38170.1 | 28.471 | 425 | 275 | 9 | 310 | 718 | 45 | 456 | 6.66e-56 | 201 |
| Msa1362300 | AT5G28530.4 | 25.220 | 567 | 349 | 14 | 111 | 667 | 61 | 562 | 3.37e-44 | 169 |
| Msa1362300 | AT5G28530.5 | 24.868 | 567 | 347 | 14 | 111 | 667 | 61 | 558 | 5.21e-43 | 166 |
Find 139 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGCGATGCCTTGTATT+TGG | 0.159430 | tig0017809:-6370 | Msa1362300:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | tig0017809:-7090 | Msa1362300:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | tig0017809:-5791 | Msa1362300:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | tig0017809:-5799 | Msa1362300:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | tig0017809:-7343 | Msa1362300:intergenic |
| CCATCAGTAATCACCGCTTT+TGG | 0.302214 | tig0017809:-6310 | Msa1362300:intergenic |
| TCCATACTTGTTCTTTCTAT+AGG | 0.305560 | tig0017809:-6149 | Msa1362300:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | tig0017809:+5907 | Msa1362300:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | tig0017809:-5901 | Msa1362300:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | tig0017809:+5454 | Msa1362300:CDS |
| ACCTATAGAAAGAACAAGTA+TGG | 0.349144 | tig0017809:+6148 | Msa1362300:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | tig0017809:+5702 | Msa1362300:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | tig0017809:-7498 | Msa1362300:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | tig0017809:+5447 | Msa1362300:CDS |
| GAGTTTACATTTACAGATGA+TGG | 0.367609 | tig0017809:+6043 | Msa1362300:CDS |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | tig0017809:+7242 | Msa1362300:CDS |
| AGGTTTGACTATGAGTGTTT+TGG | 0.377109 | tig0017809:+6103 | Msa1362300:CDS |
| TTACCCACCTGTTGTTTGAT+AGG | 0.378005 | tig0017809:-6531 | Msa1362300:intergenic |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | tig0017809:+5853 | Msa1362300:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | tig0017809:+7456 | Msa1362300:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | tig0017809:-7061 | Msa1362300:intergenic |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | tig0017809:-7370 | Msa1362300:intergenic |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | tig0017809:+5934 | Msa1362300:CDS |
| TTTGGGCAGATTCTACTAGT+AGG | 0.409763 | tig0017809:+6083 | Msa1362300:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | tig0017809:+7255 | Msa1362300:CDS |
| CAAGGCATCGCCTTTGCGCC+TGG | 0.420887 | tig0017809:+6377 | Msa1362300:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | tig0017809:+7495 | Msa1362300:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | tig0017809:+6840 | Msa1362300:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | tig0017809:-5781 | Msa1362300:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | tig0017809:-5663 | Msa1362300:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | tig0017809:+5893 | Msa1362300:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | tig0017809:+7347 | Msa1362300:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | tig0017809:+7320 | Msa1362300:CDS |
| ATACTTGTTCTTTCTATAGG+TGG | 0.464692 | tig0017809:-6146 | Msa1362300:intergenic |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | tig0017809:+5854 | Msa1362300:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | tig0017809:+5589 | Msa1362300:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | tig0017809:-5754 | Msa1362300:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | tig0017809:-5649 | Msa1362300:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | tig0017809:+7303 | Msa1362300:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | tig0017809:+5407 | Msa1362300:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | tig0017809:+7489 | Msa1362300:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | tig0017809:+5925 | Msa1362300:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | tig0017809:+7469 | Msa1362300:CDS |
| CCAAAAGCGGTGATTACTGA+TGG | 0.502215 | tig0017809:+6310 | Msa1362300:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | tig0017809:+5555 | Msa1362300:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | tig0017809:+5956 | Msa1362300:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | tig0017809:-5176 | Msa1362300:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | tig0017809:+5887 | Msa1362300:CDS |
| TTTGAGTTACTTCCAAGGTA+AGG | 0.511685 | tig0017809:+5994 | Msa1362300:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | tig0017809:+5529 | Msa1362300:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | tig0017809:-7441 | Msa1362300:intergenic |
| AGTTTGAATCTGAGTGGAAG+AGG | 0.520947 | tig0017809:+6491 | Msa1362300:CDS |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | tig0017809:-6978 | Msa1362300:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | tig0017809:+5957 | Msa1362300:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | tig0017809:+5335 | Msa1362300:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | tig0017809:+7094 | Msa1362300:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | tig0017809:+5554 | Msa1362300:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | tig0017809:+7457 | Msa1362300:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | tig0017809:-7184 | Msa1362300:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | tig0017809:-7474 | Msa1362300:intergenic |
| AGCATTTCGATGCAAATGCC+AGG | 0.536176 | tig0017809:-6395 | Msa1362300:intergenic |
| TTTATCGGTTGAAGAGAATG+TGG | 0.541414 | tig0017809:+6560 | Msa1362300:CDS |
| GAGTTGTGTTTCCAAATACA+AGG | 0.541485 | tig0017809:+6359 | Msa1362300:CDS |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | tig0017809:+5605 | Msa1362300:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | tig0017809:-5744 | Msa1362300:intergenic |
| TATCAGTATCAGCCTTACCT+TGG | 0.546983 | tig0017809:-6006 | Msa1362300:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | tig0017809:-7047 | Msa1362300:intergenic |
| CAAAAGCGGTGATTACTGAT+GGG | 0.550752 | tig0017809:+6311 | Msa1362300:CDS |
| TTGACCTATCAAACAACAGG+TGG | 0.553778 | tig0017809:+6527 | Msa1362300:CDS |
| GATGCAAATGCCAGGCGCAA+AGG | 0.554082 | tig0017809:-6387 | Msa1362300:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | tig0017809:+7144 | Msa1362300:CDS |
| GTTTGAATCTGAGTGGAAGA+GGG | 0.557830 | tig0017809:+6492 | Msa1362300:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | tig0017809:+7516 | Msa1362300:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | tig0017809:-7154 | Msa1362300:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | tig0017809:+7524 | Msa1362300:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | tig0017809:+5513 | Msa1362300:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | tig0017809:-7393 | Msa1362300:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | tig0017809:+5371 | Msa1362300:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | tig0017809:-7039 | Msa1362300:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | tig0017809:+5448 | Msa1362300:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | tig0017809:+7178 | Msa1362300:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | tig0017809:+7517 | Msa1362300:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | tig0017809:-5743 | Msa1362300:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | tig0017809:+5592 | Msa1362300:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | tig0017809:+7179 | Msa1362300:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | tig0017809:+7296 | Msa1362300:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | tig0017809:+5894 | Msa1362300:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | tig0017809:+6814 | Msa1362300:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | tig0017809:+7297 | Msa1362300:CDS |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | tig0017809:+5939 | Msa1362300:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | tig0017809:-7046 | Msa1362300:intergenic |
| TTATCGGTTGAAGAGAATGT+GGG | 0.595180 | tig0017809:+6561 | Msa1362300:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | tig0017809:+6895 | Msa1362300:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | tig0017809:+5512 | Msa1362300:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | tig0017809:-6778 | Msa1362300:intergenic |
| CTGAAAAGTTTGAATCTGAG+TGG | 0.609008 | tig0017809:+6485 | Msa1362300:CDS |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | tig0017809:+5958 | Msa1362300:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | tig0017809:+7256 | Msa1362300:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | tig0017809:+5233 | Msa1362300:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | tig0017809:+5989 | Msa1362300:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | tig0017809:+5815 | Msa1362300:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | tig0017809:+5238 | Msa1362300:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | tig0017809:-7308 | Msa1362300:intergenic |
| AAATGGTTGTTTCTCCATGG+TGG | 0.622494 | tig0017809:-6201 | Msa1362300:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | tig0017809:+6891 | Msa1362300:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | tig0017809:+5187 | Msa1362300:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | tig0017809:+7393 | Msa1362300:CDS |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | tig0017809:+5940 | Msa1362300:CDS |
| AAAAGCGGTGATTACTGATG+GGG | 0.637407 | tig0017809:+6312 | Msa1362300:CDS |
| TTTAGTGGATATAACCACCA+TGG | 0.638528 | tig0017809:+6187 | Msa1362300:CDS |
| AGAACGACATCAATCTGTGA+AGG | 0.639278 | tig0017809:+6622 | Msa1362300:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | tig0017809:-5529 | Msa1362300:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | tig0017809:-5382 | Msa1362300:intergenic |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | tig0017809:+5389 | Msa1362300:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | tig0017809:+5830 | Msa1362300:CDS |
| AACAATAGAGACATACAAGT+GGG | 0.649289 | tig0017809:+6249 | Msa1362300:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | tig0017809:-5767 | Msa1362300:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | tig0017809:+7177 | Msa1362300:CDS |
| TGACCTATCAAACAACAGGT+GGG | 0.653955 | tig0017809:+6528 | Msa1362300:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | tig0017809:+5390 | Msa1362300:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | tig0017809:+5352 | Msa1362300:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | tig0017809:+5234 | Msa1362300:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | tig0017809:+7518 | Msa1362300:CDS |
| AAACAATAGAGACATACAAG+TGG | 0.671084 | tig0017809:+6248 | Msa1362300:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | tig0017809:+7059 | Msa1362300:CDS |
| GTATGACAAACATCCAAAAG+CGG | 0.671446 | tig0017809:+6297 | Msa1362300:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | tig0017809:+7403 | Msa1362300:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | tig0017809:+5593 | Msa1362300:CDS |
| TGTAGACGCTTTGAACGTAG+AGG | 0.677604 | tig0017809:+7012 | Msa1362300:CDS |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | tig0017809:+7245 | Msa1362300:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | tig0017809:+7380 | Msa1362300:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | tig0017809:+5365 | Msa1362300:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | tig0017809:+7314 | Msa1362300:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | tig0017809:+5347 | Msa1362300:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | tig0017809:-7208 | Msa1362300:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | tig0017809:+5235 | Msa1362300:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | tig0017809:+5184 | Msa1362300:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | tig0017809:-6687 | Msa1362300:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | tig0017809:+5469 | Msa1362300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGGACTTATATAATTTCA+CGG | + | tig0017809:5925-5944 | Msa1362300:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | tig0017809:6840-6859 | Msa1362300:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | tig0017809:6928-6947 | Msa1362300:CDS | 20.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | tig0017809:5925-5944 | Msa1362300:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | tig0017809:6840-6859 | Msa1362300:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | tig0017809:6928-6947 | Msa1362300:CDS | 20.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | tig0017809:5623-5642 | Msa1362300:CDS | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | tig0017809:5802-5821 | Msa1362300:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | tig0017809:6179-6198 | Msa1362300:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | tig0017809:6180-6199 | Msa1362300:intergenic | 25.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | tig0017809:6221-6240 | Msa1362300:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | tig0017809:6270-6289 | Msa1362300:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | tig0017809:6545-6564 | Msa1362300:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | tig0017809:6836-6855 | Msa1362300:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | tig0017809:6951-6970 | Msa1362300:CDS | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | tig0017809:7160-7179 | Msa1362300:intergenic | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | tig0017809:7161-7180 | Msa1362300:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | tig0017809:5623-5642 | Msa1362300:CDS | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | tig0017809:5802-5821 | Msa1362300:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | tig0017809:6179-6198 | Msa1362300:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | tig0017809:6180-6199 | Msa1362300:intergenic | 25.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | tig0017809:6221-6240 | Msa1362300:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | tig0017809:6270-6289 | Msa1362300:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | tig0017809:6545-6564 | Msa1362300:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | tig0017809:6836-6855 | Msa1362300:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | tig0017809:6951-6970 | Msa1362300:CDS | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | tig0017809:7160-7179 | Msa1362300:intergenic | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | tig0017809:7161-7180 | Msa1362300:intergenic | 25.0% |
| GTATCACTATGTACATCAAA+AGG | - | tig0017809:5179-5198 | Msa0170310:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | tig0017809:5447-5466 | Msa1362300:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | tig0017809:5448-5467 | Msa1362300:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | tig0017809:5454-5473 | Msa1362300:CDS | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | tig0017809:5512-5531 | Msa1362300:CDS | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | tig0017809:5513-5532 | Msa1362300:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | tig0017809:5592-5611 | Msa1362300:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | tig0017809:5593-5612 | Msa1362300:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | tig0017809:5794-5813 | Msa1362300:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | tig0017809:5853-5872 | Msa1362300:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | tig0017809:5854-5873 | Msa1362300:CDS | 30.0% | |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | tig0017809:5865-5884 | Msa1362300:CDS | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | tig0017809:5866-5885 | Msa1362300:CDS | 30.0% |
| ATATAATTTCACGGATCATC+AGG | + | tig0017809:5934-5953 | Msa1362300:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | tig0017809:5957-5976 | Msa1362300:CDS | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | tig0017809:5958-5977 | Msa1362300:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | tig0017809:6043-6062 | Msa1362300:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | tig0017809:6066-6085 | Msa1362300:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | tig0017809:6149-6168 | Msa1362300:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | tig0017809:6148-6167 | Msa1362300:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | tig0017809:6152-6171 | Msa1362300:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | tig0017809:6178-6197 | Msa1362300:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | tig0017809:6248-6267 | Msa1362300:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | tig0017809:6249-6268 | Msa1362300:CDS | 30.0% | |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | tig0017809:6296-6315 | Msa1362300:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | tig0017809:6524-6543 | Msa1362300:CDS | 30.0% |
| TTCTAACACCACACAAAAAA+TGG | - | tig0017809:6606-6625 | Msa1362300:intergenic | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | tig0017809:6690-6709 | Msa1362300:intergenic | 30.0% | |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | tig0017809:6915-6934 | Msa1362300:CDS | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | tig0017809:7347-7366 | Msa1362300:CDS | 30.0% |
| ATCATTCGCAACAAATTTGT+TGG | - | tig0017809:7373-7392 | Msa1362300:intergenic | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | tig0017809:7456-7475 | Msa1362300:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | tig0017809:7457-7476 | Msa1362300:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | tig0017809:5179-5198 | Msa1362300:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | tig0017809:5447-5466 | Msa1362300:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | tig0017809:5448-5467 | Msa1362300:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | tig0017809:5454-5473 | Msa1362300:CDS | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | tig0017809:5512-5531 | Msa1362300:CDS | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | tig0017809:5513-5532 | Msa1362300:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | tig0017809:5592-5611 | Msa1362300:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | tig0017809:5593-5612 | Msa1362300:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | tig0017809:5794-5813 | Msa1362300:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | tig0017809:5853-5872 | Msa1362300:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | tig0017809:5854-5873 | Msa1362300:CDS | 30.0% | |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | tig0017809:5865-5884 | Msa1362300:CDS | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | tig0017809:5866-5885 | Msa1362300:CDS | 30.0% |
| ATATAATTTCACGGATCATC+AGG | + | tig0017809:5934-5953 | Msa1362300:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | tig0017809:5957-5976 | Msa1362300:CDS | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | tig0017809:5958-5977 | Msa1362300:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | tig0017809:6043-6062 | Msa1362300:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | tig0017809:6066-6085 | Msa1362300:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | tig0017809:6149-6168 | Msa1362300:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | tig0017809:6148-6167 | Msa1362300:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | tig0017809:6152-6171 | Msa1362300:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | tig0017809:6178-6197 | Msa1362300:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | tig0017809:6248-6267 | Msa1362300:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | tig0017809:6249-6268 | Msa1362300:CDS | 30.0% | |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | tig0017809:6296-6315 | Msa1362300:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | tig0017809:6524-6543 | Msa1362300:CDS | 30.0% |
| TTCTAACACCACACAAAAAA+TGG | - | tig0017809:6606-6625 | Msa1362300:intergenic | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | tig0017809:6690-6709 | Msa1362300:intergenic | 30.0% | |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | tig0017809:6915-6934 | Msa1362300:CDS | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | tig0017809:7347-7366 | Msa1362300:CDS | 30.0% |
| ATCATTCGCAACAAATTTGT+TGG | - | tig0017809:7373-7392 | Msa1362300:intergenic | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | tig0017809:7456-7475 | Msa1362300:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | tig0017809:7457-7476 | Msa1362300:CDS | 30.0% | |
| TGTACATAGTGATACAGATG+AGG | + | tig0017809:5184-5203 | Msa1362300:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | tig0017809:5234-5253 | Msa1362300:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | tig0017809:5371-5390 | Msa1362300:CDS | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | tig0017809:5555-5574 | Msa1362300:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | tig0017809:5589-5608 | Msa1362300:CDS | 35.0% | |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | tig0017809:5605-5624 | Msa1362300:CDS | 35.0% |
| ATCAAATGGACAAAACGCAA+AGG | - | tig0017809:5770-5789 | Msa1362300:intergenic | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | tig0017809:5784-5803 | Msa1362300:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | tig0017809:5815-5834 | Msa1362300:CDS | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | tig0017809:5875-5894 | Msa1362300:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | tig0017809:5907-5926 | Msa1362300:CDS | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | tig0017809:5956-5975 | Msa1362300:CDS | 35.0% | |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | tig0017809:5994-6013 | Msa1362300:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | tig0017809:6065-6084 | Msa1362300:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | tig0017809:6072-6091 | Msa1362300:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | tig0017809:6103-6122 | Msa1362300:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | tig0017809:6172-6191 | Msa1362300:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | tig0017809:6187-6206 | Msa1362300:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | tig0017809:6207-6226 | Msa1362300:intergenic | 35.0% |
| GTATGACAAACATCCAAAAG+CGG | + | tig0017809:6297-6316 | Msa1362300:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | tig0017809:6359-6378 | Msa1362300:CDS | 35.0% | |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | tig0017809:6478-6497 | Msa1362300:intergenic | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | tig0017809:6487-6506 | Msa1362300:intergenic | 35.0% |
| CTGAAAAGTTTGAATCTGAG+TGG | + | tig0017809:6485-6504 | Msa1362300:CDS | 35.0% | |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | tig0017809:6560-6579 | Msa1362300:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | tig0017809:6561-6580 | Msa1362300:CDS | 35.0% |
| GAAGCTTCAAAGATATTCAC+CGG | + | tig0017809:6814-6833 | Msa1362300:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | tig0017809:6981-7000 | Msa1362300:intergenic | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | tig0017809:7049-7068 | Msa1362300:intergenic | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | tig0017809:7050-7069 | Msa1362300:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | tig0017809:7064-7083 | Msa1362300:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | tig0017809:7094-7113 | Msa1362300:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | tig0017809:7242-7261 | Msa1362300:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | tig0017809:7256-7275 | Msa1362300:CDS | 35.0% |
| TAAGATAAATAGCCGTCATG+AGG | + | tig0017809:7296-7315 | Msa1362300:CDS | 35.0% | |
| AAGATAAATAGCCGTCATGA+GGG | + | tig0017809:7297-7316 | Msa1362300:CDS | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | tig0017809:7346-7365 | Msa1362300:intergenic | 35.0% | |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | tig0017809:7421-7440 | Msa1362300:intergenic | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | tig0017809:7422-7441 | Msa1362300:intergenic | 35.0% |
| TTAGAACAACATCTTGTCCT+TGG | - | tig0017809:7444-7463 | Msa1362300:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | + | tig0017809:5184-5203 | Msa1362300:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | tig0017809:5234-5253 | Msa1362300:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | tig0017809:5371-5390 | Msa1362300:CDS | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | tig0017809:5555-5574 | Msa1362300:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | tig0017809:5589-5608 | Msa1362300:CDS | 35.0% | |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | tig0017809:5605-5624 | Msa1362300:CDS | 35.0% |
| ATCAAATGGACAAAACGCAA+AGG | - | tig0017809:5770-5789 | Msa1362300:intergenic | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | tig0017809:5784-5803 | Msa1362300:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | tig0017809:5815-5834 | Msa1362300:CDS | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | tig0017809:5875-5894 | Msa1362300:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | tig0017809:5907-5926 | Msa1362300:CDS | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | tig0017809:5956-5975 | Msa1362300:CDS | 35.0% | |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | tig0017809:5994-6013 | Msa1362300:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | tig0017809:6065-6084 | Msa1362300:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | tig0017809:6072-6091 | Msa1362300:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | tig0017809:6103-6122 | Msa1362300:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | tig0017809:6172-6191 | Msa1362300:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | tig0017809:6187-6206 | Msa1362300:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | tig0017809:6207-6226 | Msa1362300:intergenic | 35.0% |
| GTATGACAAACATCCAAAAG+CGG | + | tig0017809:6297-6316 | Msa1362300:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | tig0017809:6359-6378 | Msa1362300:CDS | 35.0% | |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | tig0017809:6478-6497 | Msa1362300:intergenic | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | tig0017809:6487-6506 | Msa1362300:intergenic | 35.0% |
| CTGAAAAGTTTGAATCTGAG+TGG | + | tig0017809:6485-6504 | Msa1362300:CDS | 35.0% | |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | tig0017809:6560-6579 | Msa1362300:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | tig0017809:6561-6580 | Msa1362300:CDS | 35.0% |
| GAAGCTTCAAAGATATTCAC+CGG | + | tig0017809:6814-6833 | Msa1362300:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | tig0017809:6981-7000 | Msa1362300:intergenic | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | tig0017809:7049-7068 | Msa1362300:intergenic | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | tig0017809:7050-7069 | Msa1362300:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | tig0017809:7064-7083 | Msa1362300:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | tig0017809:7094-7113 | Msa1362300:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | tig0017809:7242-7261 | Msa1362300:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | tig0017809:7256-7275 | Msa1362300:CDS | 35.0% |
| TAAGATAAATAGCCGTCATG+AGG | + | tig0017809:7296-7315 | Msa1362300:CDS | 35.0% | |
| AAGATAAATAGCCGTCATGA+GGG | + | tig0017809:7297-7316 | Msa1362300:CDS | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | tig0017809:7346-7365 | Msa1362300:intergenic | 35.0% | |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | tig0017809:7421-7440 | Msa1362300:intergenic | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | tig0017809:7422-7441 | Msa1362300:intergenic | 35.0% |
| TTAGAACAACATCTTGTCCT+TGG | - | tig0017809:7444-7463 | Msa1362300:intergenic | 35.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | tig0017809:5187-5206 | Msa1362300:CDS | 40.0% | |
| ! | GACACTGATAGTGATACAGA+TGG | + | tig0017809:5233-5252 | Msa1362300:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | tig0017809:5235-5254 | Msa1362300:CDS | 40.0% |
| AACAACGATGTTCGTACTGA+TGG | + | tig0017809:5335-5354 | Msa1362300:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | tig0017809:5385-5404 | Msa1362300:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | tig0017809:5389-5408 | Msa1362300:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | tig0017809:5390-5409 | Msa1362300:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | tig0017809:5407-5426 | Msa1362300:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | tig0017809:5469-5488 | Msa1362300:CDS | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | tig0017809:5554-5573 | Msa1362300:CDS | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | tig0017809:5652-5671 | Msa1362300:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | tig0017809:5666-5685 | Msa1362300:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | tig0017809:5702-5721 | Msa1362300:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | tig0017809:5746-5765 | Msa1362300:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | tig0017809:5747-5766 | Msa1362300:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | tig0017809:5757-5776 | Msa1362300:intergenic | 40.0% | |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | tig0017809:5874-5893 | Msa1362300:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | tig0017809:5878-5897 | Msa1362300:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | tig0017809:5904-5923 | Msa1362300:intergenic | 40.0% | |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | tig0017809:5989-6008 | Msa1362300:CDS | 40.0% |
| TATCAGTATCAGCCTTACCT+TGG | - | tig0017809:6009-6028 | Msa1362300:intergenic | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | tig0017809:6083-6102 | Msa1362300:CDS | 40.0% | |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | tig0017809:6204-6223 | Msa1362300:intergenic | 40.0% |
| CAAAAGCGGTGATTACTGAT+GGG | + | tig0017809:6311-6330 | Msa1362300:CDS | 40.0% | |
| AAAAGCGGTGATTACTGATG+GGG | + | tig0017809:6312-6331 | Msa1362300:CDS | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | tig0017809:6491-6510 | Msa1362300:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | tig0017809:6492-6511 | Msa1362300:CDS | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | tig0017809:6527-6546 | Msa1362300:CDS | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | tig0017809:6528-6547 | Msa1362300:CDS | 40.0% | |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | tig0017809:6534-6553 | Msa1362300:intergenic | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | tig0017809:6595-6614 | Msa1362300:CDS | 40.0% |
| AGAACGACATCAATCTGTGA+AGG | + | tig0017809:6622-6641 | Msa1362300:CDS | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | tig0017809:6849-6868 | Msa1362300:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | tig0017809:6891-6910 | Msa1362300:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | tig0017809:7042-7061 | Msa1362300:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | tig0017809:7059-7078 | Msa1362300:CDS | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | tig0017809:7093-7112 | Msa1362300:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | tig0017809:7157-7176 | Msa1362300:intergenic | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | tig0017809:7177-7196 | Msa1362300:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | tig0017809:7178-7197 | Msa1362300:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | tig0017809:7211-7230 | Msa1362300:intergenic | 40.0% | |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | tig0017809:7255-7274 | Msa1362300:CDS | 40.0% |
| AAATGGACATGACGAGGATA+AGG | + | tig0017809:7320-7339 | Msa1362300:CDS | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | tig0017809:7424-7443 | Msa1362300:CDS | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | tig0017809:5187-5206 | Msa1362300:CDS | 40.0% | |
| ! | GACACTGATAGTGATACAGA+TGG | + | tig0017809:5233-5252 | Msa1362300:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | tig0017809:5235-5254 | Msa1362300:CDS | 40.0% |
| AACAACGATGTTCGTACTGA+TGG | + | tig0017809:5335-5354 | Msa1362300:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | tig0017809:5385-5404 | Msa1362300:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | tig0017809:5389-5408 | Msa1362300:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | tig0017809:5390-5409 | Msa1362300:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | tig0017809:5407-5426 | Msa1362300:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | tig0017809:5469-5488 | Msa1362300:CDS | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | tig0017809:5554-5573 | Msa1362300:CDS | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | tig0017809:5652-5671 | Msa1362300:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | tig0017809:5666-5685 | Msa1362300:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | tig0017809:5702-5721 | Msa1362300:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | tig0017809:5746-5765 | Msa1362300:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | tig0017809:5747-5766 | Msa1362300:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | tig0017809:5757-5776 | Msa1362300:intergenic | 40.0% | |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | tig0017809:5874-5893 | Msa1362300:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | tig0017809:5878-5897 | Msa1362300:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | tig0017809:5904-5923 | Msa1362300:intergenic | 40.0% | |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | tig0017809:5989-6008 | Msa1362300:CDS | 40.0% |
| TATCAGTATCAGCCTTACCT+TGG | - | tig0017809:6009-6028 | Msa1362300:intergenic | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | tig0017809:6083-6102 | Msa1362300:CDS | 40.0% | |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | tig0017809:6204-6223 | Msa1362300:intergenic | 40.0% |
| CAAAAGCGGTGATTACTGAT+GGG | + | tig0017809:6311-6330 | Msa1362300:CDS | 40.0% | |
| AAAAGCGGTGATTACTGATG+GGG | + | tig0017809:6312-6331 | Msa1362300:CDS | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | tig0017809:6491-6510 | Msa1362300:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | tig0017809:6492-6511 | Msa1362300:CDS | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | tig0017809:6527-6546 | Msa1362300:CDS | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | tig0017809:6528-6547 | Msa1362300:CDS | 40.0% | |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | tig0017809:6534-6553 | Msa1362300:intergenic | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | tig0017809:6595-6614 | Msa1362300:CDS | 40.0% |
| AGAACGACATCAATCTGTGA+AGG | + | tig0017809:6622-6641 | Msa1362300:CDS | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | tig0017809:6849-6868 | Msa1362300:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | tig0017809:6891-6910 | Msa1362300:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | tig0017809:7042-7061 | Msa1362300:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | tig0017809:7059-7078 | Msa1362300:CDS | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | tig0017809:7093-7112 | Msa1362300:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | tig0017809:7157-7176 | Msa1362300:intergenic | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | tig0017809:7177-7196 | Msa1362300:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | tig0017809:7178-7197 | Msa1362300:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | tig0017809:7211-7230 | Msa1362300:intergenic | 40.0% | |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | tig0017809:7255-7274 | Msa1362300:CDS | 40.0% |
| AAATGGACATGACGAGGATA+AGG | + | tig0017809:7320-7339 | Msa1362300:CDS | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | tig0017809:7424-7443 | Msa1362300:CDS | 40.0% | |
| ! | TGATAGTGATACAGATGGGG+TGG | + | tig0017809:5238-5257 | Msa1362300:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | tig0017809:5365-5384 | Msa1362300:CDS | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | tig0017809:5532-5551 | Msa1362300:intergenic | 45.0% | |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | tig0017809:5529-5548 | Msa1362300:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | tig0017809:5939-5958 | Msa1362300:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | tig0017809:5940-5959 | Msa1362300:CDS | 45.0% | |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | tig0017809:6313-6332 | Msa1362300:intergenic | 45.0% |
| CCAAAAGCGGTGATTACTGA+TGG | + | tig0017809:6310-6329 | Msa1362300:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | tig0017809:6373-6392 | Msa1362300:intergenic | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | tig0017809:6398-6417 | Msa1362300:intergenic | 45.0% | |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | tig0017809:6675-6694 | Msa1362300:intergenic | 45.0% |
| GTCAATGCAGTTGTCAGCAT+AGG | - | tig0017809:6781-6800 | Msa1362300:intergenic | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | tig0017809:6895-6914 | Msa1362300:CDS | 45.0% | |
| ! | TGTAGACGCTTTGAACGTAG+AGG | + | tig0017809:7012-7031 | Msa1362300:CDS | 45.0% |
| AATGACCATGTTTCGTCGAG+GGG | + | tig0017809:7179-7198 | Msa1362300:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | tig0017809:7245-7264 | Msa1362300:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | tig0017809:7303-7322 | Msa1362300:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | tig0017809:7311-7330 | Msa1362300:intergenic | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | tig0017809:7380-7399 | Msa1362300:CDS | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | tig0017809:7396-7415 | Msa1362300:intergenic | 45.0% | |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | tig0017809:7393-7412 | Msa1362300:CDS | 45.0% |
| GAAATCCTGGGCACACAATA+CGG | + | tig0017809:7469-7488 | Msa1362300:CDS | 45.0% | |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | tig0017809:7495-7514 | Msa1362300:CDS | 45.0% |
| ACACCAATTCCAGCAAGTTC+TGG | - | tig0017809:7501-7520 | Msa1362300:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | tig0017809:7517-7536 | Msa1362300:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | tig0017809:7518-7537 | Msa1362300:CDS | 45.0% | |
| ! | TGATAGTGATACAGATGGGG+TGG | + | tig0017809:5238-5257 | Msa1362300:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | tig0017809:5365-5384 | Msa1362300:CDS | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | tig0017809:5532-5551 | Msa1362300:intergenic | 45.0% | |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | tig0017809:5529-5548 | Msa1362300:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | tig0017809:5939-5958 | Msa1362300:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | tig0017809:5940-5959 | Msa1362300:CDS | 45.0% | |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | tig0017809:6313-6332 | Msa1362300:intergenic | 45.0% |
| CCAAAAGCGGTGATTACTGA+TGG | + | tig0017809:6310-6329 | Msa1362300:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | tig0017809:6373-6392 | Msa1362300:intergenic | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | tig0017809:6398-6417 | Msa1362300:intergenic | 45.0% | |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | tig0017809:6675-6694 | Msa1362300:intergenic | 45.0% |
| GTCAATGCAGTTGTCAGCAT+AGG | - | tig0017809:6781-6800 | Msa1362300:intergenic | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | tig0017809:6895-6914 | Msa1362300:CDS | 45.0% | |
| ! | TGTAGACGCTTTGAACGTAG+AGG | + | tig0017809:7012-7031 | Msa1362300:CDS | 45.0% |
| AATGACCATGTTTCGTCGAG+GGG | + | tig0017809:7179-7198 | Msa1362300:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | tig0017809:7245-7264 | Msa1362300:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | tig0017809:7303-7322 | Msa1362300:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | tig0017809:7311-7330 | Msa1362300:intergenic | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | tig0017809:7380-7399 | Msa1362300:CDS | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | tig0017809:7396-7415 | Msa1362300:intergenic | 45.0% | |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | tig0017809:7393-7412 | Msa1362300:CDS | 45.0% |
| GAAATCCTGGGCACACAATA+CGG | + | tig0017809:7469-7488 | Msa1362300:CDS | 45.0% | |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | tig0017809:7495-7514 | Msa1362300:CDS | 45.0% |
| ACACCAATTCCAGCAAGTTC+TGG | - | tig0017809:7501-7520 | Msa1362300:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | tig0017809:7517-7536 | Msa1362300:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | tig0017809:7518-7537 | Msa1362300:CDS | 45.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | tig0017809:5347-5366 | Msa1362300:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | tig0017809:5830-5849 | Msa1362300:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | tig0017809:6672-6691 | Msa1362300:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | tig0017809:7144-7163 | Msa1362300:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | tig0017809:7314-7333 | Msa1362300:CDS | 50.0% | |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | tig0017809:7403-7422 | Msa1362300:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | tig0017809:7516-7535 | Msa1362300:CDS | 50.0% |
| GTCTGAAGATCAAGGGGAGA+AGG | + | tig0017809:7524-7543 | Msa1362300:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | tig0017809:5347-5366 | Msa1362300:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | tig0017809:5830-5849 | Msa1362300:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | tig0017809:6672-6691 | Msa1362300:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | tig0017809:7144-7163 | Msa1362300:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | tig0017809:7314-7333 | Msa1362300:CDS | 50.0% | |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | tig0017809:7403-7422 | Msa1362300:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | tig0017809:7516-7535 | Msa1362300:CDS | 50.0% |
| GTCTGAAGATCAAGGGGAGA+AGG | + | tig0017809:7524-7543 | Msa1362300:CDS | 50.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | tig0017809:5352-5371 | Msa1362300:CDS | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | tig0017809:5887-5906 | Msa1362300:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | tig0017809:5893-5912 | Msa1362300:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | tig0017809:5894-5913 | Msa1362300:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | tig0017809:6390-6409 | Msa1362300:intergenic | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | tig0017809:7187-7206 | Msa1362300:intergenic | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | tig0017809:5352-5371 | Msa1362300:CDS | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | tig0017809:5887-5906 | Msa1362300:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | tig0017809:5893-5912 | Msa1362300:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | tig0017809:5894-5913 | Msa1362300:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | tig0017809:6390-6409 | Msa1362300:intergenic | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | tig0017809:7187-7206 | Msa1362300:intergenic | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | tig0017809:7477-7496 | Msa1362300:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | tig0017809:7489-7508 | Msa1362300:CDS | 60.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | tig0017809:7477-7496 | Msa1362300:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | tig0017809:7489-7508 | Msa1362300:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | tig0017809:6377-6396 | Msa1362300:CDS | 65.0% |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | tig0017809:6377-6396 | Msa1362300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017809 | gene | 5149 | 7554 | 5149 | ID=Msa1362300;Name=Msa1362300 |
| tig0017809 | mRNA | 5149 | 7554 | 5149 | ID=Msa1362300-mRNA-1;Parent=Msa1362300;Name=Msa1362300-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|801 |
| tig0017809 | exon | 5149 | 7554 | 5149 | ID=Msa1362300-mRNA-1:exon:12954;Parent=Msa1362300-mRNA-1 |
| tig0017809 | CDS | 5149 | 7554 | 5149 | ID=Msa1362300-mRNA-1:cds;Parent=Msa1362300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
