AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386350 MtrunA17_Chr2g0287651 42.816 696 379 6 93 783 63 744 0.0 584
Msa0386350 MtrunA17_Chr1g0203051 34.396 596 368 6 68 648 34 621 3.45e-116 371
Msa0386350 MtrunA17_Chr1g0202341 32.538 587 373 10 104 676 50 627 3.47e-96 319
Msa0386350 MtrunA17_Chr5g0448761 32.867 572 359 10 109 663 64 627 8.68e-94 315
Msa0386350 MtrunA17_Chr2g0324011 29.181 586 397 6 109 682 14 593 3.69e-86 289
Msa0386350 MtrunA17_Chr2g0296781 29.204 678 433 15 109 764 1 653 1.88e-84 288
Msa0386350 MtrunA17_Chr8g0363841 28.037 642 423 12 101 716 9 637 1.38e-83 284
Msa0386350 MtrunA17_Chr5g0441581 28.346 635 408 12 109 724 36 642 9.34e-83 282
Msa0386350 MtrunA17_Chr1g0198761 31.023 577 367 11 111 665 53 620 7.29e-80 276
Msa0386350 MtrunA17_Chr3g0082121 29.934 608 397 12 108 704 46 635 7.16e-79 272
Msa0386350 MtrunA17_Chr6g0477261 34.813 428 264 6 245 661 22 445 1.95e-78 270
Msa0386350 MtrunA17_Chr1g0203721 28.205 624 427 12 111 724 69 681 6.55e-76 267
Msa0386350 MtrunA17_Chr1g0207551 30.660 561 372 9 109 661 38 589 2.76e-74 261
Msa0386350 MtrunA17_Chr6g0458391 27.866 567 365 11 109 661 229 765 8.80e-72 253
Msa0386350 MtrunA17_Chr3g0080351 27.724 624 384 13 100 699 71 651 5.04e-71 253
Msa0386350 MtrunA17_Chr1g0196541 30.420 572 363 15 109 661 1 556 1.10e-70 249
Msa0386350 MtrunA17_Chr2g0329031 25.932 617 410 11 92 694 1 584 1.44e-68 244
Msa0386350 MtrunA17_Chr5g0440451 27.200 625 405 17 109 709 47 645 9.74e-65 236
Msa0386350 MtrunA17_Chr3g0118611 29.412 510 326 12 211 709 56 542 1.25e-63 230
Msa0386350 MtrunA17_Chr5g0448511 30.402 398 267 5 271 662 5 398 1.37e-63 225
Msa0386350 MtrunA17_Chr2g0276841 27.360 625 424 14 111 721 76 684 3.59e-63 228
Msa0386350 MtrunA17_Chr5g0431001 31.915 423 262 8 111 512 67 484 2.08e-62 220
Msa0386350 MtrunA17_Chr2g0290391 26.929 661 411 17 109 730 55 682 7.16e-61 221
Msa0386350 MtrunA17_Chr2g0291581 27.592 569 374 13 109 661 75 621 3.45e-60 219
Msa0386350 MtrunA17_Chr2g0287061 27.558 606 388 14 110 709 188 748 1.06e-58 216
Msa0386350 MtrunA17_Chr2g0291591 30.247 486 313 10 106 580 65 535 1.24e-57 208
Msa0386350 MtrunA17_Chr2g0294841 27.719 570 383 13 111 662 51 609 2.56e-57 211
Msa0386350 MtrunA17_Chr1g0164591 32.131 305 193 3 192 491 12 307 1.44e-49 178
Msa0386350 MtrunA17_Chr2g0308841 33.051 236 156 1 436 671 4 237 1.35e-38 145
Msa0386350 MtrunA17_Chr7g0258861 31.579 285 176 5 109 382 14 290 9.41e-38 144
Msa0386350 MtrunA17_Chr1g0149131 33.636 110 68 1 383 487 1 110 2.32e-15 73.6
Msa0386350 MtrunA17_Chr8g0340801 33.945 109 70 1 213 321 1 107 3.92e-14 69.3
Msa0386350 MtrunA17_Chr6g0451441 25.600 250 170 6 31 269 2 246 6.23e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386350 AT4G38180.1 31.269 646 421 12 33 665 3 638 5.80e-93 313
Msa0386350 AT4G15090.1 29.552 670 442 14 57 711 2 656 1.24e-84 291
Msa0386350 AT4G15090.5 29.552 670 442 14 57 711 2 656 1.24e-84 291
Msa0386350 AT4G15090.3 29.552 670 442 14 57 711 2 656 1.24e-84 291
Msa0386350 AT4G15090.2 29.552 670 442 14 57 711 2 656 1.24e-84 291
Msa0386350 AT4G15090.4 29.552 670 442 14 57 711 2 656 1.24e-84 291
Msa0386350 AT3G22170.2 26.599 688 441 14 56 720 30 676 1.40e-71 254
Msa0386350 AT3G22170.1 26.599 688 441 14 56 720 30 676 1.40e-71 254
Msa0386350 AT2G27110.2 26.260 655 414 16 63 703 14 613 4.06e-67 242
Msa0386350 AT2G27110.1 26.260 655 414 16 63 703 14 613 4.06e-67 242
Msa0386350 AT5G28530.1 28.423 577 381 11 111 667 61 625 3.26e-64 231
Msa0386350 AT3G06250.2 26.942 605 391 11 109 709 194 751 2.21e-63 230
Msa0386350 AT3G06250.1 26.942 605 391 11 109 709 194 751 2.21e-63 230
Msa0386350 AT3G06250.3 26.942 605 391 11 109 709 194 751 2.21e-63 230
Msa0386350 AT1G10240.2 27.244 635 412 13 111 721 54 662 2.84e-63 228
Msa0386350 AT1G10240.1 27.244 635 412 13 111 721 54 662 2.84e-63 228
Msa0386350 AT5G28530.3 28.076 577 379 11 111 667 61 621 5.42e-63 227
Msa0386350 AT5G28530.2 28.076 577 379 11 111 667 61 621 5.42e-63 227
Msa0386350 AT1G52520.1 27.604 576 378 13 109 666 89 643 2.36e-62 226
Msa0386350 AT2G27110.3 30.485 433 279 9 278 703 51 468 3.47e-62 225
Msa0386350 AT4G19990.7 27.451 612 375 14 83 665 6 577 4.70e-62 226
Msa0386350 AT4G19990.3 27.903 577 356 13 110 665 26 563 5.11e-62 226
Msa0386350 AT4G19990.4 27.903 577 356 13 110 665 26 563 5.11e-62 226
Msa0386350 AT4G19990.5 27.903 577 356 13 110 665 26 563 5.33e-62 226
Msa0386350 AT4G19990.6 27.556 577 358 12 110 665 26 563 5.74e-62 226
Msa0386350 AT4G19990.2 27.556 577 358 12 110 665 26 563 5.74e-62 226
Msa0386350 AT1G76320.2 26.876 573 376 13 109 664 1 547 6.76e-62 225
Msa0386350 AT1G76320.1 26.876 573 376 13 109 664 1 547 7.60e-62 224
Msa0386350 AT1G76320.4 26.876 573 376 13 109 664 1 547 7.60e-62 224
Msa0386350 AT1G76320.3 26.876 573 376 13 109 664 1 547 1.09e-61 223
Msa0386350 AT1G80010.1 28.155 618 387 20 84 670 79 670 3.18e-61 223
Msa0386350 AT5G18960.2 26.568 606 395 13 109 709 215 775 2.17e-59 218
Msa0386350 AT5G18960.1 26.568 606 395 13 109 709 215 775 2.17e-59 218
Msa0386350 AT4G19990.1 29.825 399 272 4 273 665 110 506 2.54e-59 217
Msa0386350 AT2G32250.2 26.742 617 366 14 109 701 42 596 1.39e-55 207
Msa0386350 AT2G32250.4 26.742 617 366 14 109 701 42 596 1.39e-55 207
Msa0386350 AT2G32250.8 26.580 617 367 14 109 701 1 555 1.40e-55 207
Msa0386350 AT2G32250.6 26.742 617 366 14 109 701 42 596 1.49e-55 207
Msa0386350 AT2G32250.1 26.742 617 366 14 109 701 42 596 1.49e-55 207
Msa0386350 AT2G32250.3 26.742 617 366 14 109 701 42 596 1.49e-55 207
Msa0386350 AT2G32250.5 26.742 617 366 14 109 701 42 596 1.53e-55 207
Msa0386350 AT2G32250.7 26.580 617 367 14 109 701 1 555 1.95e-55 206
Msa0386350 AT4G38170.1 28.103 427 278 9 310 720 45 458 4.01e-54 198
Msa0386350 AT5G28530.4 25.397 567 348 14 111 667 61 562 2.05e-43 168
Msa0386350 AT5G28530.5 25.044 567 346 14 111 667 61 558 2.35e-42 165

Find 173 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 3_1:+90125721 None:intergenic
CAAAGGCGATGCCTTGTATT+TGG 0.159430 3_1:+90127467 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 3_1:+90125958 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 3_1:+90126747 None:intergenic
TCACTCAATTTACGGTAATT+AGG 0.235603 3_1:+90128046 None:intergenic
CCCATAGTTTCTCAATGTTT+TGG 0.242135 3_1:+90125446 None:intergenic
TATCAACTTCACTCAATTTA+CGG 0.276736 3_1:+90128038 None:intergenic
ATCACTCGCAACAAATTTAC+TGG 0.280329 3_1:+90126494 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 3_1:+90127527 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 3_1:+90127688 None:intergenic
TAACACCATACCCAACATTA+TGG 0.313783 3_1:+90125770 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 3_1:-90127930 Msa0386350:CDS
CAGTGTTAGAATGTGATGAT+AGG 0.338987 3_1:+90125674 None:intergenic
TGATAAACCCAAGTCCTTCA+TGG 0.346028 3_1:+90127936 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.347376 3_1:-90128383 Msa0386350:CDS
ACCTATAGAAAGAACAAGTA+TGG 0.349144 3_1:-90127689 Msa0386350:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 3_1:-90128135 Msa0386350:CDS
ACACCAATTCCAGCAAGTTC+TGG 0.360337 3_1:+90126339 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 3_1:-90128390 Msa0386350:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 3_1:-90127794 Msa0386350:CDS
CTCGGAACATTGTGTGTTCC+AGG 0.370631 3_1:+90125625 None:intergenic
TAAGAGCGCAAGTGATTATA+AGG 0.371814 3_1:-90126595 Msa0386350:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 3_1:-90127734 Msa0386350:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 3_1:+90127306 None:intergenic
TGTAAGAACATGTCATATCT+TGG 0.387474 3_1:-90127984 Msa0386350:CDS
TGTTCTAATTGTAGAAATCC+TGG 0.392101 3_1:-90126381 Msa0386350:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 3_1:-90125733 Msa0386350:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 3_1:+90126776 None:intergenic
ACTGGAACACACAATGTTCC+TGG 0.398163 3_1:-90125643 Msa0386350:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 3_1:+90126467 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 3_1:-90125661 Msa0386350:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 3_1:-90127903 Msa0386350:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 3_1:-90127754 Msa0386350:CDS
GATTATAAGGAGGCTCTAGA+AGG 0.413898 3_1:-90126582 Msa0386350:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 3_1:+90126285 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 3_1:-90126077 Msa0386350:CDS
CAAGGCATCGCCTTTGCGCC+TGG 0.420887 3_1:-90127460 Msa0386350:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 3_1:-90125998 Msa0386350:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 3_1:-90126342 Msa0386350:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 3_1:-90126997 Msa0386350:CDS
TACGGTAATTAGGCATCAAA+TGG 0.442752 3_1:+90128056 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 3_1:+90128174 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 3_1:-90127944 Msa0386350:CDS
TAAATTTGTTGCGAGTGATA+AGG 0.460501 3_1:-90126490 Msa0386350:CDS
AAATGGACATGACGAGGATA+AGG 0.462491 3_1:-90126517 Msa0386350:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 3_1:+90127691 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 3_1:-90127983 Msa0386350:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 3_1:-90128248 Msa0386350:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 3_1:+90128083 None:intergenic
AGTGTTAGAATGTGATGATA+GGG 0.470693 3_1:+90125675 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 3_1:+90128188 None:intergenic
AATAGCCGTCATGAGGGAAA+TGG 0.477370 3_1:-90126534 Msa0386350:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 3_1:-90128430 Msa0386350:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 3_1:-90126348 Msa0386350:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 3_1:-90127912 Msa0386350:CDS
GAAATCCTGGGCACACAATA+CGG 0.497533 3_1:-90126368 Msa0386350:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 3_1:-90126120 Msa0386350:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 3_1:-90127527 Msa0386350:CDS
ATGTGAAGCGTGATTCTAAT+GGG 0.504223 3_1:-90128282 Msa0386350:CDS
AATGGTGTGACCCGTGACTT+TGG 0.505092 3_1:-90125841 Msa0386350:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 3_1:-90127881 Msa0386350:CDS
GTATCACTATGTACATCAAA+AGG 0.509968 3_1:+90128661 None:intergenic
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 3_1:-90127950 Msa0386350:CDS
TTTGAGTTACTTCCAAGGTA+AGG 0.511685 3_1:-90127843 Msa0386350:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 3_1:-90128308 Msa0386350:CDS
TTAGAACAACATCTTGTCCT+TGG 0.513299 3_1:+90126396 None:intergenic
TGTGATGATAGGGTAGTTGT+CGG 0.517812 3_1:+90125685 None:intergenic
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 3_1:-90127346 Msa0386350:CDS
ATTTAGTCTGCAACTTGTCA+AGG 0.524883 3_1:+90126859 None:intergenic
CAAGGGTTAAAATACAAGAT+GGG 0.527779 3_1:-90127880 Msa0386350:CDS
AACAACGATGTTCGTACTGA+TGG 0.529175 3_1:-90128502 Msa0386350:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 3_1:-90126743 Msa0386350:CDS
GATGTGAAGCGTGATTCTAA+TGG 0.532287 3_1:-90128283 Msa0386350:CDS
GTTCTAATTGTAGAAATCCT+GGG 0.533951 3_1:-90126380 Msa0386350:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 3_1:+90126653 None:intergenic
CACGTCCGTATTGTGTGCCC+AGG 0.534840 3_1:+90126363 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 3_1:-90125997 Msa0386350:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 3_1:+90127442 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 3_1:+90125697 None:intergenic
TTTATCGGTTGAAGAGAATG+TGG 0.541414 3_1:-90127277 Msa0386350:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 3_1:-90127478 Msa0386350:CDS
AATAAGGAGGGTGTTAATGA+TGG 0.543414 3_1:-90128232 Msa0386350:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 3_1:-90125795 Msa0386350:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 3_1:+90128093 None:intergenic
TATCAGTATCAGCCTTACCT+TGG 0.546983 3_1:+90127831 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 3_1:+90126790 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 3_1:-90127526 Msa0386350:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 3_1:-90127310 Msa0386350:CDS
GATGCAAATGCCAGGCGCAA+AGG 0.554082 3_1:+90127450 None:intergenic
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 3_1:-90126693 Msa0386350:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 3_1:-90127345 Msa0386350:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 3_1:-90126076 Msa0386350:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 3_1:-90126321 Msa0386350:CDS
CGAGATGTTGAGAAAAGCAC+TGG 0.563759 3_1:-90126093 Msa0386350:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 3_1:+90126683 None:intergenic
GTCTGAAGATCAAGGGGAGA+AGG 0.567087 3_1:-90126313 Msa0386350:CDS
TATTGTTTGCAAAATACCAC+GGG 0.573778 3_1:-90128324 Msa0386350:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 3_1:+90126444 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 3_1:-90128466 Msa0386350:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 3_1:+90126798 None:intergenic
TGTGACAGATGATGATATAA+GGG 0.581249 3_1:-90128389 Msa0386350:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 3_1:-90126659 Msa0386350:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 3_1:-90126320 Msa0386350:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 3_1:+90128094 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 3_1:-90128245 Msa0386350:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 3_1:-90126658 Msa0386350:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 3_1:-90125781 Msa0386350:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 3_1:-90126541 Msa0386350:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 3_1:-90127943 Msa0386350:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 3_1:-90127023 Msa0386350:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 3_1:-90126540 Msa0386350:CDS
ATACTCACCGGTGTATAACT+CGG 0.588936 3_1:+90125607 None:intergenic
ATGATAGGGTAGTTGTCGGA+GGG 0.591320 3_1:+90125689 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 3_1:-90127898 Msa0386350:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 3_1:-90125775 Msa0386350:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 3_1:+90126791 None:intergenic
TTATCGGTTGAAGAGAATGT+GGG 0.595180 3_1:-90127276 Msa0386350:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 3_1:-90125504 Msa0386350:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 3_1:-90126942 Msa0386350:CDS
GTATTGTTTGCAAAATACCA+CGG 0.599210 3_1:-90128325 Msa0386350:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 3_1:-90125780 Msa0386350:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 3_1:+90127059 None:intergenic
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 3_1:-90127352 Msa0386350:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 3_1:-90127879 Msa0386350:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 3_1:-90125470 Msa0386350:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 3_1:-90126581 Msa0386350:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 3_1:-90128604 Msa0386350:CDS
GCTACTTTGAGTTACTTCCA+AGG 0.617165 3_1:-90127848 Msa0386350:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 3_1:-90128022 Msa0386350:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 3_1:-90128599 Msa0386350:CDS
CATGTCCATTTCCCTCATGA+CGG 0.619225 3_1:+90126529 None:intergenic
GATGATAGGGTAGTTGTCGG+AGG 0.619255 3_1:+90125688 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 3_1:+90127636 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 3_1:-90126946 Msa0386350:CDS
ACATAGTGATACAGATGAGG+TGG 0.623452 3_1:-90128650 Msa0386350:CDS
CCACTGATGGTGAATGTCAA+AGG 0.624002 3_1:-90126444 Msa0386350:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 3_1:+90125788 None:intergenic
TTTCACGGATCATCAGGCAA+GGG 0.637022 3_1:-90127897 Msa0386350:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 3_1:-90127525 Msa0386350:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 3_1:-90127650 Msa0386350:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 3_1:-90127215 Msa0386350:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 3_1:+90128308 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 3_1:+90128455 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 3_1:-90125730 Msa0386350:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 3_1:-90128448 Msa0386350:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 3_1:-90128007 Msa0386350:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 3_1:-90127588 Msa0386350:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 3_1:+90128070 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 3_1:-90126660 Msa0386350:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 3_1:-90127309 Msa0386350:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 3_1:-90128447 Msa0386350:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 3_1:-90126117 Msa0386350:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 3_1:-90128485 Msa0386350:CDS
ACACTGATAGTGATACAGAT+GGG 0.663559 3_1:-90128603 Msa0386350:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.668190 3_1:-90126319 Msa0386350:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 3_1:-90127589 Msa0386350:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 3_1:-90126778 Msa0386350:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 3_1:-90127540 Msa0386350:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 3_1:-90126434 Msa0386350:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 3_1:-90128244 Msa0386350:CDS
TGTAGACGCTTTGAACGTAG+AGG 0.677604 3_1:-90126825 Msa0386350:CDS
CAATGTTCCGAGTTATACAC+CGG 0.682160 3_1:-90125614 Msa0386350:intron
CATTTGACACTGCTACAGAG+TGG 0.682675 3_1:+90126121 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 3_1:-90126592 Msa0386350:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 3_1:-90126457 Msa0386350:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 3_1:-90128472 Msa0386350:CDS
TGAGGGAAATGGACATGACG+AGG 0.691164 3_1:-90126523 Msa0386350:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 3_1:-90128490 Msa0386350:CDS
ACATAGACTATTGAACGCAG+CGG 0.718507 3_1:+90126629 None:intergenic
CACTGATAGTGATACAGATG+GGG 0.724418 3_1:-90128602 Msa0386350:CDS
TGTACATAGTGATACAGATG+AGG 0.739686 3_1:-90128653 Msa0386350:CDS
AATTATGCAAGAAATCCACA+AGG 0.743577 3_1:+90127150 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 3_1:-90128368 Msa0386350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG - chr3_1:90127953-90127972 Msa0386350:CDS 15.0%
!!! AATTATTTTAATATGCACTA+TGG - chr3_1:90128397-90128416 Msa0386350:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG - chr3_1:90128398-90128417 Msa0386350:CDS 15.0%
!!! TCATAAACTGTTTTAAATAT+AGG + chr3_1:90128626-90128645 None:intergenic 15.0%
!! AAAGGACTTATATAATTTCA+CGG - chr3_1:90126233-90126252 Msa0386350:intron 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG - chr3_1:90127148-90127167 Msa0386350:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG - chr3_1:90127236-90127255 Msa0386350:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG - chr3_1:90128399-90128418 Msa0386350:CDS 20.0%
! GATGGAAAAAATAAGAAGAA+TGG - chr3_1:90125931-90125950 Msa0386350:intron 25.0%
! TATCAACTTCACTCAATTTA+CGG + chr3_1:90126110-90126129 None:intergenic 25.0%
! ATATCCACTAAAAATGACAA+GGG + chr3_1:90126487-90126506 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG + chr3_1:90126488-90126507 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG + chr3_1:90126529-90126548 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG - chr3_1:90126578-90126597 Msa0386350:CDS 25.0%
! GGTGGGTAAAAAAAATTTAT+CGG - chr3_1:90126853-90126872 Msa0386350:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG + chr3_1:90127144-90127163 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG - chr3_1:90127259-90127278 Msa0386350:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG + chr3_1:90127468-90127487 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG + chr3_1:90127469-90127488 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG + chr3_1:90128190-90128209 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG + chr3_1:90128223-90128242 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG - chr3_1:90128286-90128305 Msa0386350:CDS 25.0%
! TAAACAATCAAAATACTCAC+CGG + chr3_1:90128553-90128572 None:intergenic 25.0%
GTATCACTATGTACATCAAA+AGG + chr3_1:90125487-90125506 None:intergenic 30.0%
ATGTGACAGATGATGATATA+AGG - chr3_1:90125755-90125774 Msa0386350:CDS 30.0%
TGTGACAGATGATGATATAA+GGG - chr3_1:90125756-90125775 Msa0386350:CDS 30.0%
AGATGATGATATAAGGGATA+TGG - chr3_1:90125762-90125781 Msa0386350:CDS 30.0%
GTATTGTTTGCAAAATACCA+CGG - chr3_1:90125820-90125839 Msa0386350:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG - chr3_1:90125821-90125840 Msa0386350:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG - chr3_1:90125900-90125919 Msa0386350:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG - chr3_1:90125901-90125920 Msa0386350:intron 30.0%
TCACTCAATTTACGGTAATT+AGG + chr3_1:90126102-90126121 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG - chr3_1:90126161-90126180 Msa0386350:intron 30.0%
GTAAGAACATGTCATATCTT+GGG - chr3_1:90126162-90126181 Msa0386350:intron 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG - chr3_1:90126173-90126192 Msa0386350:intron 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG - chr3_1:90126174-90126193 Msa0386350:intron 30.0%
ATATAATTTCACGGATCATC+AGG - chr3_1:90126242-90126261 Msa0386350:intron 30.0%
CAAGGGTTAAAATACAAGAT+GGG - chr3_1:90126265-90126284 Msa0386350:intron 30.0%
AAGGGTTAAAATACAAGATG+GGG - chr3_1:90126266-90126285 Msa0386350:intron 30.0%
GAGTTTACATTTACAGATGA+TGG - chr3_1:90126351-90126370 Msa0386350:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG - chr3_1:90126374-90126393 Msa0386350:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG + chr3_1:90126457-90126476 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG - chr3_1:90126456-90126475 Msa0386350:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG + chr3_1:90126460-90126479 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG + chr3_1:90126486-90126505 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG - chr3_1:90126556-90126575 Msa0386350:CDS 30.0%
AACAATAGAGACATACAAGT+GGG - chr3_1:90126557-90126576 Msa0386350:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG + chr3_1:90126604-90126623 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG - chr3_1:90126832-90126851 Msa0386350:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG + chr3_1:90126914-90126933 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG + chr3_1:90126998-90127017 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG - chr3_1:90127223-90127242 Msa0386350:CDS 30.0%
!! TAAATTTGTTGCGAGTGATA+AGG - chr3_1:90127655-90127674 Msa0386350:CDS 30.0%
ATCATTCGCAACAAATTTGT+TGG + chr3_1:90127681-90127700 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+TGG - chr3_1:90127764-90127783 Msa0386350:CDS 30.0%
GTTCTAATTGTAGAAATCCT+GGG - chr3_1:90127765-90127784 Msa0386350:CDS 30.0%
GATTCATTATCAGACTCAAT+AGG + chr3_1:90127863-90127882 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG - chr3_1:90128147-90128166 Msa0386350:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG - chr3_1:90128148-90128167 Msa0386350:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG + chr3_1:90128318-90128337 None:intergenic 30.0%
AAAACTGATCCACCATTATT+TGG + chr3_1:90128427-90128446 None:intergenic 30.0%
AGTGTTAGAATGTGATGATA+GGG + chr3_1:90128473-90128492 None:intergenic 30.0%
TGTACATAGTGATACAGATG+AGG - chr3_1:90125492-90125511 Msa0386350:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG - chr3_1:90125542-90125561 Msa0386350:intron 35.0%
GTGGAATTTAACCATGGTAA+TGG - chr3_1:90125679-90125698 Msa0386350:CDS 35.0%
ATGTGAAGCGTGATTCTAAT+GGG - chr3_1:90125863-90125882 Msa0386350:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG - chr3_1:90125897-90125916 Msa0386350:intron 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG - chr3_1:90125913-90125932 Msa0386350:intron 35.0%
ATCAAATGGACAAAACGCAA+AGG + chr3_1:90126078-90126097 None:intergenic 35.0%
TACGGTAATTAGGCATCAAA+TGG + chr3_1:90126092-90126111 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG - chr3_1:90126123-90126142 Msa0386350:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG - chr3_1:90126183-90126202 Msa0386350:intron 35.0%
AGGACTTGGGTTTATCAAAA+AGG - chr3_1:90126215-90126234 Msa0386350:intron 35.0%
GCAAGGGTTAAAATACAAGA+TGG - chr3_1:90126264-90126283 Msa0386350:intron 35.0%
! TTTGAGTTACTTCCAAGGTA+AGG - chr3_1:90126302-90126321 Msa0386350:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG - chr3_1:90126373-90126392 Msa0386350:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG + chr3_1:90126380-90126399 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG - chr3_1:90126411-90126430 Msa0386350:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG - chr3_1:90126480-90126499 Msa0386350:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG - chr3_1:90126495-90126514 Msa0386350:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG + chr3_1:90126515-90126534 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG - chr3_1:90126605-90126624 Msa0386350:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG - chr3_1:90126667-90126686 Msa0386350:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG + chr3_1:90126786-90126805 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG + chr3_1:90126795-90126814 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG - chr3_1:90126793-90126812 Msa0386350:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG - chr3_1:90126868-90126887 Msa0386350:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG - chr3_1:90126869-90126888 Msa0386350:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG - chr3_1:90127122-90127141 Msa0386350:CDS 35.0%
ATTTAGTCTGCAACTTGTCA+AGG + chr3_1:90127289-90127308 None:intergenic 35.0%
CTTCATGGCACAAATAATGT+GGG + chr3_1:90127357-90127376 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG + chr3_1:90127358-90127377 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG + chr3_1:90127372-90127391 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG - chr3_1:90127402-90127421 Msa0386350:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG - chr3_1:90127550-90127569 Msa0386350:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG - chr3_1:90127564-90127583 Msa0386350:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG - chr3_1:90127604-90127623 Msa0386350:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG - chr3_1:90127605-90127624 Msa0386350:CDS 35.0%
ATCACTCGCAACAAATTTAC+TGG + chr3_1:90127654-90127673 None:intergenic 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG + chr3_1:90127729-90127748 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG + chr3_1:90127730-90127749 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+TGG + chr3_1:90127752-90127771 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG + chr3_1:90127991-90128010 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG - chr3_1:90128238-90128257 Msa0386350:CDS 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG + chr3_1:90128317-90128336 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG - chr3_1:90128365-90128384 Msa0386350:CDS 35.0%
TAACACCATACCCAACATTA+TGG + chr3_1:90128378-90128397 None:intergenic 35.0%
CAGTGTTAGAATGTGATGAT+AGG + chr3_1:90128474-90128493 None:intergenic 35.0%
ACATAGTGATACAGATGAGG+TGG - chr3_1:90125495-90125514 Msa0386350:CDS 40.0%
! GACACTGATAGTGATACAGA+TGG - chr3_1:90125541-90125560 Msa0386350:intron 40.0%
! CACTGATAGTGATACAGATG+GGG - chr3_1:90125543-90125562 Msa0386350:intron 40.0%
AACAACGATGTTCGTACTGA+TGG - chr3_1:90125643-90125662 Msa0386350:CDS 40.0%
CATTGCAAACACCATTACCA+TGG + chr3_1:90125693-90125712 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG - chr3_1:90125697-90125716 Msa0386350:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG - chr3_1:90125698-90125717 Msa0386350:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG - chr3_1:90125715-90125734 Msa0386350:CDS 40.0%
GGATATGGAATTCAACACAG+AGG - chr3_1:90125777-90125796 Msa0386350:CDS 40.0%
GATGTGAAGCGTGATTCTAA+TGG - chr3_1:90125862-90125881 Msa0386350:intron 40.0%
TTCGAATGGTTAGCGTAGAT+CGG + chr3_1:90125960-90125979 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG + chr3_1:90125974-90125993 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG - chr3_1:90126010-90126029 Msa0386350:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG + chr3_1:90126054-90126073 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG + chr3_1:90126055-90126074 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG + chr3_1:90126065-90126084 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG - chr3_1:90126182-90126201 Msa0386350:intron 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG - chr3_1:90126186-90126205 Msa0386350:intron 40.0%
TGATAAACCCAAGTCCTTCA+TGG + chr3_1:90126212-90126231 None:intergenic 40.0%
! GCTACTTTGAGTTACTTCCA+AGG - chr3_1:90126297-90126316 Msa0386350:CDS 40.0%
TATCAGTATCAGCCTTACCT+TGG + chr3_1:90126317-90126336 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG - chr3_1:90126391-90126410 Msa0386350:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG + chr3_1:90126512-90126531 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG - chr3_1:90126619-90126638 Msa0386350:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG - chr3_1:90126620-90126639 Msa0386350:CDS 40.0%
AGTTTGAATCTGAGTGGAAG+AGG - chr3_1:90126799-90126818 Msa0386350:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG - chr3_1:90126800-90126819 Msa0386350:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG - chr3_1:90126835-90126854 Msa0386350:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG - chr3_1:90126836-90126855 Msa0386350:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG + chr3_1:90126842-90126861 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG - chr3_1:90126903-90126922 Msa0386350:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG - chr3_1:90126930-90126949 Msa0386350:CDS 40.0%
AGATGTCAAAAAGGCGATAG+AGG - chr3_1:90127157-90127176 Msa0386350:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG - chr3_1:90127199-90127218 Msa0386350:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG + chr3_1:90127350-90127369 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG - chr3_1:90127367-90127386 Msa0386350:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG + chr3_1:90127401-90127420 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG + chr3_1:90127465-90127484 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG - chr3_1:90127485-90127504 Msa0386350:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG - chr3_1:90127486-90127505 Msa0386350:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG + chr3_1:90127519-90127538 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG - chr3_1:90127563-90127582 Msa0386350:CDS 40.0%
AAATGGACATGACGAGGATA+AGG - chr3_1:90127628-90127647 Msa0386350:CDS 40.0%
GGAGTAAAAAGTCAACACCA+AGG - chr3_1:90127732-90127751 Msa0386350:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG - chr3_1:90128069-90128088 Msa0386350:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG + chr3_1:90128360-90128379 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG - chr3_1:90128364-90128383 Msa0386350:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG - chr3_1:90128370-90128389 Msa0386350:CDS 40.0%
TGTGATGATAGGGTAGTTGT+CGG + chr3_1:90128463-90128482 None:intergenic 40.0%
CAATGTTCCGAGTTATACAC+CGG - chr3_1:90128531-90128550 Msa0386350:CDS 40.0%
ATACTCACCGGTGTATAACT+CGG + chr3_1:90128541-90128560 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG - chr3_1:90128641-90128660 Msa0386350:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG - chr3_1:90128675-90128694 Msa0386350:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG - chr3_1:90125546-90125565 Msa0386350:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG - chr3_1:90125673-90125692 Msa0386350:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG + chr3_1:90125840-90125859 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG - chr3_1:90125837-90125856 Msa0386350:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG - chr3_1:90126247-90126266 Msa0386350:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG - chr3_1:90126248-90126267 Msa0386350:intron 45.0%
! CCATCAGTAATCACCGCTTT+TGG + chr3_1:90126621-90126640 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG - chr3_1:90126618-90126637 Msa0386350:CDS 45.0%
CAAAGGCGATGCCTTGTATT+TGG + chr3_1:90126681-90126700 None:intergenic 45.0%
AGCATTTCGATGCAAATGCC+AGG + chr3_1:90126706-90126725 None:intergenic 45.0%
!!! CCACAAGGCTGTTTTTGTGT+CGG + chr3_1:90126983-90127002 None:intergenic 45.0%
GTCAATGCAGTTGTCAGCAT+AGG + chr3_1:90127089-90127108 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG - chr3_1:90127203-90127222 Msa0386350:CDS 45.0%
! TGTAGACGCTTTGAACGTAG+AGG - chr3_1:90127320-90127339 Msa0386350:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG - chr3_1:90127487-90127506 Msa0386350:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG - chr3_1:90127553-90127572 Msa0386350:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG - chr3_1:90127611-90127630 Msa0386350:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG + chr3_1:90127619-90127638 None:intergenic 45.0%
TGTTGCGAATGATCCACTGA+TGG - chr3_1:90127688-90127707 Msa0386350:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG + chr3_1:90127704-90127723 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG - chr3_1:90127701-90127720 Msa0386350:CDS 45.0%
GAAATCCTGGGCACACAATA+CGG - chr3_1:90127777-90127796 Msa0386350:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG - chr3_1:90127803-90127822 Msa0386350:CDS 45.0%
ACACCAATTCCAGCAAGTTC+TGG + chr3_1:90127809-90127828 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG - chr3_1:90127825-90127844 Msa0386350:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG - chr3_1:90127826-90127845 Msa0386350:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG + chr3_1:90128027-90128046 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG - chr3_1:90128025-90128044 Msa0386350:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG - chr3_1:90128028-90128047 Msa0386350:CDS 45.0%
! CGAGATGTTGAGAAAAGCAC+TGG - chr3_1:90128052-90128071 Msa0386350:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG - chr3_1:90128068-90128087 Msa0386350:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG - chr3_1:90128350-90128369 Msa0386350:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG - chr3_1:90128412-90128431 Msa0386350:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG - chr3_1:90128415-90128434 Msa0386350:CDS 45.0%
ATGATAGGGTAGTTGTCGGA+GGG + chr3_1:90128459-90128478 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG - chr3_1:90128484-90128503 Msa0386350:CDS 45.0%
ACTGGAACACACAATGTTCC+TGG - chr3_1:90128502-90128521 Msa0386350:CDS 45.0%
! CGTACTGATGGAGATGCAGA+CGG - chr3_1:90125655-90125674 Msa0386350:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG - chr3_1:90126138-90126157 Msa0386350:CDS 50.0%
CCGACACAAAAACAGCCTTG+TGG - chr3_1:90126980-90126999 Msa0386350:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG - chr3_1:90127452-90127471 Msa0386350:CDS 50.0%
TGAGGGAAATGGACATGACG+AGG - chr3_1:90127622-90127641 Msa0386350:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG - chr3_1:90127711-90127730 Msa0386350:CDS 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG - chr3_1:90127824-90127843 Msa0386350:CDS 50.0%
GTCTGAAGATCAAGGGGAGA+AGG - chr3_1:90127832-90127851 Msa0386350:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG - chr3_1:90128304-90128323 Msa0386350:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG + chr3_1:90128451-90128470 None:intergenic 50.0%
GATGATAGGGTAGTTGTCGG+AGG + chr3_1:90128460-90128479 None:intergenic 50.0%
CTCGGAACATTGTGTGTTCC+AGG + chr3_1:90128523-90128542 None:intergenic 50.0%
TGATGGAGATGCAGACGGTG+TGG - chr3_1:90125660-90125679 Msa0386350:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG - chr3_1:90126195-90126214 Msa0386350:intron 55.0%
AAGGGTGGCCATGAAGGACT+TGG - chr3_1:90126201-90126220 Msa0386350:intron 55.0%
AGGGTGGCCATGAAGGACTT+GGG - chr3_1:90126202-90126221 Msa0386350:intron 55.0%
GATGCAAATGCCAGGCGCAA+AGG + chr3_1:90126698-90126717 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG + chr3_1:90127495-90127514 None:intergenic 55.0%
CACGTCCGTATTGTGTGCCC+AGG + chr3_1:90127785-90127804 None:intergenic 60.0%
CGGACGTGTCCAGAACTTGC+TGG - chr3_1:90127797-90127816 Msa0386350:CDS 60.0%
!! CAAGGCATCGCCTTTGCGCC+TGG - chr3_1:90126685-90126704 Msa0386350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90125457 90128710 90125457 ID=Msa0386350;Name=Msa0386350
chr3_1 mRNA 90125457 90128710 90125457 ID=Msa0386350-mRNA-1;Parent=Msa0386350;Name=Msa0386350-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|0.25|1|1|4|0|993
chr3_1 exon 90126272 90128710 90126272 ID=Msa0386350-mRNA-1:exon:24871;Parent=Msa0386350-mRNA-1
chr3_1 exon 90125954 90126175 90125954 ID=Msa0386350-mRNA-1:exon:24870;Parent=Msa0386350-mRNA-1
chr3_1 exon 90125615 90125863 90125615 ID=Msa0386350-mRNA-1:exon:24869;Parent=Msa0386350-mRNA-1
chr3_1 exon 90125457 90125528 90125457 ID=Msa0386350-mRNA-1:exon:24868;Parent=Msa0386350-mRNA-1
chr3_1 CDS 90126272 90128710 90126272 ID=Msa0386350-mRNA-1:cds;Parent=Msa0386350-mRNA-1
chr3_1 CDS 90125954 90126175 90125954 ID=Msa0386350-mRNA-1:cds;Parent=Msa0386350-mRNA-1
chr3_1 CDS 90125615 90125863 90125615 ID=Msa0386350-mRNA-1:cds;Parent=Msa0386350-mRNA-1
chr3_1 CDS 90125457 90125528 90125457 ID=Msa0386350-mRNA-1:cds;Parent=Msa0386350-mRNA-1
Gene Sequence

>Msa0386350

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTACATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAGCGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTATTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGTAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAAATTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAACAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGTAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACGAGGATAAGGCCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCAAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTATCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCTGGAACACACAATGTTCCGAGTTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA
Protein sequence

>Msa0386350

MSTYSEATLPFDVHSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMEFNTEDEAIKFYVLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSIFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKILEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDEDKASKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVPGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH*