Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163770 | sp|Q9UTK2|RM19_SCHPO | 51.852 | 135 | 65 | 0 | 25 | 159 | 9 | 143 | 3.17e-45 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163770 | A0A072VKA9 | 100.000 | 149 | 0 | 0 | 15 | 163 | 1 | 149 | 3.79e-105 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120530 | Msa0163770 | 0.882600 | 9.095319e-71 | -8.615850e-47 |
| Msa0163770 | Msa1006010 | 0.824788 | 6.675610e-54 | -8.615850e-47 |
| Msa0163770 | Msa1029060 | 0.814967 | 1.176391e-51 | -8.615850e-47 |
| Msa0163770 | Msa1048070 | 0.811385 | 7.188975e-51 | -8.615850e-47 |
| Msa0163770 | Msa1080330 | 0.815320 | 9.822763e-52 | -8.615850e-47 |
| Msa0163770 | Msa1156150 | 0.814306 | 1.647962e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163770 | MtrunA17_Chr1g0179011 | 100.000 | 149 | 0 | 0 | 15 | 163 | 1 | 149 | 7.29e-109 | 306 |
| Msa0163770 | MtrunA17_Chr3g0119811 | 40.994 | 161 | 85 | 3 | 5 | 158 | 45 | 202 | 5.03e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163770 | AT4G35490.2 | 85.315 | 143 | 21 | 0 | 21 | 163 | 13 | 155 | 2.75e-91 | 262 |
| Msa0163770 | AT4G35490.1 | 85.315 | 143 | 21 | 0 | 21 | 163 | 13 | 155 | 2.75e-91 | 262 |
| Msa0163770 | AT1G32990.1 | 44.286 | 140 | 75 | 2 | 19 | 158 | 72 | 208 | 6.82e-28 | 103 |
Find 87 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAGGGTTTAGTTAAAT+TGG | 0.157888 | 1_4:-42098960 | None:intergenic |
| TCCATTTCTAAATCCATTAT+TGG | 0.175466 | 1_4:+42101591 | Msa0163770:CDS |
| CAATATTTCACTTGTCAAAT+AGG | 0.238855 | 1_4:-42101959 | None:intergenic |
| TGCAAAGAGTTTCGTTAATC+TGG | 0.261218 | 1_4:-42099163 | None:intergenic |
| GTAACAGCCATTGGTGTATC+AGG | 0.275383 | 1_4:-42101366 | None:intergenic |
| CTATTTGACAAGTGAAATAT+TGG | 0.285834 | 1_4:+42101960 | Msa0163770:three_prime_UTR |
| GTTGCAGAGAGACTGAAATT+AGG | 0.286232 | 1_4:-42098975 | None:intergenic |
| GGTATCATGACAACACAAAA+TGG | 0.296845 | 1_4:-42100194 | None:intergenic |
| CGATACCCGCAGCTTTCTTC+AGG | 0.313010 | 1_4:-42101452 | None:intergenic |
| GCTCCTAGCTGTACCAATAA+TGG | 0.322397 | 1_4:-42101604 | None:intergenic |
| TTCGGAACGCTCATCGTTGA+TGG | 0.343708 | 1_4:-42101201 | None:intergenic |
| CTACTTGGCCACTCACAAAA+TGG | 0.344339 | 1_4:+42101745 | Msa0163770:three_prime_UTR |
| ACAGTCTGATCCTTACTTGC+AGG | 0.357839 | 1_4:+42101554 | Msa0163770:CDS |
| TTGCAGAGAGACTGAAATTA+GGG | 0.361257 | 1_4:-42098974 | None:intergenic |
| AGATTAACGAAACTCTTTGC+AGG | 0.372535 | 1_4:+42099165 | Msa0163770:five_prime_UTR |
| AATTAGGGTTTAGTTAAATT+GGG | 0.377195 | 1_4:-42098959 | None:intergenic |
| TTTGTTGAATACAAGTTTAG+TGG | 0.393063 | 1_4:+42101783 | Msa0163770:three_prime_UTR |
| ACCAATAATGGATTTAGAAA+TGG | 0.398795 | 1_4:-42101592 | None:intergenic |
| GAAAGCTGCGGGTATCGAAT+TGG | 0.398936 | 1_4:+42101458 | Msa0163770:CDS |
| GGAGGTGGCGGTCACATGAC+CGG | 0.412632 | 1_4:-42101493 | None:intergenic |
| ATTGTCGCTGCTACCACTTT+CGG | 0.429301 | 1_4:-42101219 | None:intergenic |
| AGTGGCATACCCTGCAAGTA+AGG | 0.435747 | 1_4:-42101564 | None:intergenic |
| TTATGTTTCAAATCTCTACT+TGG | 0.440526 | 1_4:+42101730 | Msa0163770:three_prime_UTR |
| TCTCTCTGTATGATTTCTCC+AGG | 0.442085 | 1_4:+42099034 | Msa0163770:five_prime_UTR |
| AACGATGAGCGTTCCGAAAG+TGG | 0.442624 | 1_4:+42101206 | Msa0163770:CDS |
| CCTCCTGTGGGACCTGCGCT+AGG | 0.444053 | 1_4:+42101279 | Msa0163770:CDS |
| TTGTCATGATACCTTTGTCT+AGG | 0.445610 | 1_4:+42100204 | Msa0163770:exon |
| CTCCAGCTGGAACTCTCAAC+CGG | 0.454096 | 1_4:-42101242 | None:intergenic |
| TCCAGCTGGAGGAGCACGTC+CGG | 0.454983 | 1_4:+42101254 | Msa0163770:CDS |
| AGCACGTCCGGCGCCTCCTG+TGG | 0.466575 | 1_4:+42101266 | Msa0163770:CDS |
| ATGCTCTATATTAGTCTAGC+TGG | 0.471718 | 1_4:+42101909 | Msa0163770:three_prime_UTR |
| AAAGCTGCGGGTATCGAATT+GGG | 0.473529 | 1_4:+42101459 | Msa0163770:CDS |
| AGTGGCAGAAATTGATGTCC+TGG | 0.480407 | 1_4:+42101801 | Msa0163770:three_prime_UTR |
| TTCAATACTTTCAAAAGCAA+AGG | 0.480430 | 1_4:-42101679 | None:intergenic |
| AAATCGAGAGTTTAGAAAGA+GGG | 0.492321 | 1_4:-42099010 | None:intergenic |
| AGTCTTTGCAGAAAGCCATA+AGG | 0.492679 | 1_4:-42101317 | None:intergenic |
| GCTGTTATTGTAACAGCCAT+TGG | 0.492932 | 1_4:-42101375 | None:intergenic |
| GGCGGTCACATGACCGGGAC+GGG | 0.494244 | 1_4:-42101487 | None:intergenic |
| TCAGTACCGACTGAACCTTA+TGG | 0.497875 | 1_4:+42101302 | Msa0163770:CDS |
| GAAATCGAGAGTTTAGAAAG+AGG | 0.500063 | 1_4:-42099011 | None:intergenic |
| TGTCATGATACCTTTGTCTA+GGG | 0.505391 | 1_4:+42100205 | Msa0163770:exon |
| AAGTGGTAGCAGCGACAATC+CGG | 0.509428 | 1_4:+42101223 | Msa0163770:CDS |
| GAACGCTCATCGTTGATGGC+TGG | 0.511519 | 1_4:-42101197 | None:intergenic |
| GCCGGACGTGCTCCTCCAGC+TGG | 0.512277 | 1_4:-42101255 | None:intergenic |
| TTGAAAGTATTGAATAACTT+CGG | 0.513554 | 1_4:+42101688 | Msa0163770:three_prime_UTR |
| GCACGTCCGGCGCCTCCTGT+GGG | 0.517535 | 1_4:+42101267 | Msa0163770:CDS |
| CATACACGTGCCGAAGTGAC+AGG | 0.517596 | 1_4:-42101515 | None:intergenic |
| GAGGTGGCGGTCACATGACC+GGG | 0.519759 | 1_4:-42101492 | None:intergenic |
| CCGAAGTGACAGGGAGGTGG+CGG | 0.522973 | 1_4:-42101505 | None:intergenic |
| CAGAAATTGATGTCCTGGTA+TGG | 0.528426 | 1_4:+42101806 | Msa0163770:three_prime_UTR |
| TGTTACAATAACAGCTTACA+AGG | 0.549953 | 1_4:+42101383 | Msa0163770:CDS |
| TGACCTAGCGCAGGTCCCAC+AGG | 0.552959 | 1_4:-42101282 | None:intergenic |
| GAGTGGTGAAAATTTGAGAA+GGG | 0.565321 | 1_4:-42100163 | None:intergenic |
| GCAGGTCCCACAGGAGGCGC+CGG | 0.567732 | 1_4:-42101273 | None:intergenic |
| ATTGGTACAGCTAGGAGCAT+GGG | 0.571876 | 1_4:+42101609 | Msa0163770:CDS |
| AGATTATTTATATCCATACC+AGG | 0.577644 | 1_4:-42101819 | None:intergenic |
| CCGCCACCTCCCTGTCACTT+CGG | 0.584871 | 1_4:+42101505 | Msa0163770:CDS |
| TGGTACCTGAAGAAAGCTGC+GGG | 0.584881 | 1_4:+42101447 | Msa0163770:CDS |
| ATCCGGTTGAGAGTTCCAGC+TGG | 0.592293 | 1_4:+42101240 | Msa0163770:CDS |
| TATTGGTACAGCTAGGAGCA+TGG | 0.593721 | 1_4:+42101608 | Msa0163770:CDS |
| ATCTTGAATGAATTGATCAA+AGG | 0.597878 | 1_4:+42101649 | Msa0163770:exon |
| CAGTCTGATCCTTACTTGCA+GGG | 0.597928 | 1_4:+42101555 | Msa0163770:CDS |
| GTGCCGAAGTGACAGGGAGG+TGG | 0.602083 | 1_4:-42101508 | None:intergenic |
| TTAAATCTCCTTCCGTCTCG+TGG | 0.602388 | 1_4:+42101427 | Msa0163770:CDS |
| TTCAGGTACCACGAGACGGA+AGG | 0.605506 | 1_4:-42101435 | None:intergenic |
| ATTTCAGTCTCTCTGCAACT+CGG | 0.605747 | 1_4:+42098979 | Msa0163770:five_prime_UTR |
| TGGCGGTCACATGACCGGGA+CGG | 0.607191 | 1_4:-42101488 | None:intergenic |
| TTTCTTCAGGTACCACGAGA+CGG | 0.610355 | 1_4:-42101439 | None:intergenic |
| AGAGTGGTGAAAATTTGAGA+AGG | 0.617408 | 1_4:-42100164 | None:intergenic |
| AGTCGGTACTGACCTAGCGC+AGG | 0.626095 | 1_4:-42101291 | None:intergenic |
| GAATTGGGAAGTACCCGTCC+CGG | 0.626450 | 1_4:+42101474 | Msa0163770:CDS |
| TCGTTGATGGCTGGAAGTAG+CGG | 0.627637 | 1_4:-42101188 | None:intergenic |
| GAGAAGGGATTGAATCACAA+AGG | 0.635548 | 1_4:-42100148 | None:intergenic |
| AATCCATTATTGGTACAGCT+AGG | 0.638443 | 1_4:+42101601 | Msa0163770:CDS |
| CCTAGCGCAGGTCCCACAGG+AGG | 0.638505 | 1_4:-42101279 | None:intergenic |
| ATACACGTGCCGAAGTGACA+GGG | 0.645886 | 1_4:-42101514 | None:intergenic |
| AGAAAGCCATAAGGTTCAGT+CGG | 0.648161 | 1_4:-42101308 | None:intergenic |
| TCTGCAAAGACTTCAACGCA+CGG | 0.650245 | 1_4:+42101328 | Msa0163770:CDS |
| AGATTTAACAGTGAACTCAA+AGG | 0.651355 | 1_4:-42101412 | None:intergenic |
| AGTAACAGTACCCTAGACAA+AGG | 0.653943 | 1_4:-42100215 | None:intergenic |
| GATTTAGAAATGGACTCAAG+TGG | 0.655714 | 1_4:-42101582 | None:intergenic |
| ATTCAAGCCTGATACACCAA+TGG | 0.658568 | 1_4:+42101359 | Msa0163770:CDS |
| GTGGTACCTGAAGAAAGCTG+CGG | 0.662466 | 1_4:+42101446 | Msa0163770:CDS |
| CGGTTGAGAGTTCCAGCTGG+AGG | 0.663118 | 1_4:+42101243 | Msa0163770:CDS |
| GCACGTGTATGAGATCGCTA+AGG | 0.664058 | 1_4:+42101527 | Msa0163770:CDS |
| ACAAAATGGAATATGCAGAG+TGG | 0.731826 | 1_4:-42100180 | None:intergenic |
| CACGTGCCGAAGTGACAGGG+AGG | 0.790794 | 1_4:-42101511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAAAAATTAGTAG+TGG | + | chr1_4:42099429-42099448 | Msa0163770:intron | 10.0% |
| !!! | AATTCAATTTTGTTGTTATT+AGG | + | chr1_4:42099113-42099132 | Msa0163770:intron | 15.0% |
| !!! | TGTTTCTAATATATTTTCTT+TGG | + | chr1_4:42099200-42099219 | Msa0163770:intron | 15.0% |
| !!! | TAGAAAAATTGTTTTCTATT+AGG | + | chr1_4:42100457-42100476 | Msa0163770:intron | 15.0% |
| !! | AACTATTCATATAATCAAAT+GGG | - | chr1_4:42100578-42100597 | None:intergenic | 15.0% |
| !! | AATTAGGGTTTAGTTAAATT+GGG | - | chr1_4:42098962-42098981 | None:intergenic | 20.0% |
| !! | AAATTAGGGTTTAGTTAAAT+TGG | - | chr1_4:42098963-42098982 | None:intergenic | 20.0% |
| !! | TAATCAATTTCAACGAAAAA+TGG | - | chr1_4:42099094-42099113 | None:intergenic | 20.0% |
| !! | TAGCTATCAAAATCAATTAA+GGG | - | chr1_4:42099281-42099300 | None:intergenic | 20.0% |
| !! | ATAGCTATCAAAATCAATTA+AGG | - | chr1_4:42099282-42099301 | None:intergenic | 20.0% |
| !!! | GTTACTTTTGTATGTTTTAT+AGG | + | chr1_4:42100090-42100109 | Msa0163770:intron | 20.0% |
| !! | ATATGCTAGAATAAAAAGAT+AGG | + | chr1_4:42100265-42100284 | Msa0163770:intron | 20.0% |
| !! | CAACTATTCATATAATCAAA+TGG | - | chr1_4:42100579-42100598 | None:intergenic | 20.0% |
| !!! | CTTCATATTTTTGTTCTTAT+TGG | + | chr1_4:42100728-42100747 | Msa0163770:intron | 20.0% |
| !!! | TTGAAAGTATTGAATAACTT+CGG | + | chr1_4:42101688-42101707 | Msa0163770:three_prime_UTR | 20.0% |
| ! | AGCTATCAAAATCAATTAAG+GGG | - | chr1_4:42099280-42099299 | None:intergenic | 25.0% |
| !!! | AAGCTTTAGATAAGAAGTAT+CGG | + | chr1_4:42099735-42099754 | Msa0163770:intron | 25.0% |
| ! | TTTAGTCCATAACATATGTA+CGG | - | chr1_4:42099891-42099910 | None:intergenic | 25.0% |
| ! | AATCGAACTCAAATTTGAAA+TGG | - | chr1_4:42100012-42100031 | None:intergenic | 25.0% |
| !!! | TGTTTTTACTCTTTTCTTGA+AGG | + | chr1_4:42100059-42100078 | Msa0163770:intron | 25.0% |
| !! | GTTTTTACTCTTTTCTTGAA+GGG | + | chr1_4:42100060-42100079 | Msa0163770:intron | 25.0% |
| ! | TTCAATAAAGAGAAGACTAA+AGG | + | chr1_4:42100314-42100333 | Msa0163770:intron | 25.0% |
| !!! | AAGCATAAAAAGTGTTATGT+TGG | + | chr1_4:42100352-42100371 | Msa0163770:intron | 25.0% |
| ! | GAATCTAGTAAATCAATCAT+GGG | - | chr1_4:42100378-42100397 | None:intergenic | 25.0% |
| !! | TAGTTGATATGAATTTGTCA+TGG | + | chr1_4:42100684-42100703 | Msa0163770:intron | 25.0% |
| !!! | AGTTGGCTTAAATTTTTCAA+TGG | + | chr1_4:42100880-42100899 | Msa0163770:intron | 25.0% |
| ! | TGTTGGAAATTAGTAAATAG+AGG | + | chr1_4:42100931-42100950 | Msa0163770:intron | 25.0% |
| !! | GATATTTTCAAAAACTAGAG+TGG | + | chr1_4:42100970-42100989 | Msa0163770:intron | 25.0% |
| !!! | TGAAACTTTCATGTTTTGTT+TGG | + | chr1_4:42101020-42101039 | Msa0163770:intron | 25.0% |
| ! | ATGATCTTCTAATCTTGTAT+TGG | + | chr1_4:42101110-42101129 | Msa0163770:intron | 25.0% |
| !!! | TTGGTCTGATAGTTTTTTTT+TGG | + | chr1_4:42101129-42101148 | Msa0163770:intron | 25.0% |
| !!! | TGGTCTGATAGTTTTTTTTT+GGG | + | chr1_4:42101130-42101149 | Msa0163770:intron | 25.0% |
| ! | TCCATTTCTAAATCCATTAT+TGG | + | chr1_4:42101591-42101610 | Msa0163770:CDS | 25.0% |
| !!! | ACCAATAATGGATTTAGAAA+TGG | - | chr1_4:42101595-42101614 | None:intergenic | 25.0% |
| ! | ATCTTGAATGAATTGATCAA+AGG | + | chr1_4:42101649-42101668 | Msa0163770:exon | 25.0% |
| ! | TTCAATACTTTCAAAAGCAA+AGG | - | chr1_4:42101682-42101701 | None:intergenic | 25.0% |
| ! | TTATGTTTCAAATCTCTACT+TGG | + | chr1_4:42101730-42101749 | Msa0163770:three_prime_UTR | 25.0% |
| ! | TTTGTTGAATACAAGTTTAG+TGG | + | chr1_4:42101783-42101802 | Msa0163770:three_prime_UTR | 25.0% |
| ! | AGATTATTTATATCCATACC+AGG | - | chr1_4:42101822-42101841 | None:intergenic | 25.0% |
| ! | CAATATTTCACTTGTCAAAT+AGG | - | chr1_4:42101962-42101981 | None:intergenic | 25.0% |
| ! | CTATTTGACAAGTGAAATAT+TGG | + | chr1_4:42101960-42101979 | Msa0163770:three_prime_UTR | 25.0% |
| AAATCGAGAGTTTAGAAAGA+GGG | - | chr1_4:42099013-42099032 | None:intergenic | 30.0% | |
| ! | CATTATTTATGAAGCACTAG+CGG | - | chr1_4:42099486-42099505 | None:intergenic | 30.0% |
| ACAAATCTATGACTTCAACA+AGG | - | chr1_4:42099565-42099584 | None:intergenic | 30.0% | |
| CAACACTAACACATTGATAT+CGG | + | chr1_4:42099628-42099647 | Msa0163770:intron | 30.0% | |
| !! | CTCTGGAATAATGCATTATA+TGG | - | chr1_4:42099817-42099836 | None:intergenic | 30.0% |
| GTCATTCTTTCCTATTACTA+TGG | + | chr1_4:42099933-42099952 | Msa0163770:intron | 30.0% | |
| AAAGATAGGTTATAGAGTGA+TGG | + | chr1_4:42100279-42100298 | Msa0163770:intron | 30.0% | |
| AAGATAGGTTATAGAGTGAT+GGG | + | chr1_4:42100280-42100299 | Msa0163770:intron | 30.0% | |
| GGAATCTAGTAAATCAATCA+TGG | - | chr1_4:42100379-42100398 | None:intergenic | 30.0% | |
| AGACTTGTAAAGTTGAGTTA+AGG | - | chr1_4:42100400-42100419 | None:intergenic | 30.0% | |
| CTCAACTTTACAAGTCTATT+AGG | + | chr1_4:42100403-42100422 | Msa0163770:intron | 30.0% | |
| CCTACCCTAAAAAAGAAATT+GGG | + | chr1_4:42100761-42100780 | Msa0163770:intron | 30.0% | |
| !!! | GAGTCCCAATTTCTTTTTTA+GGG | - | chr1_4:42100768-42100787 | None:intergenic | 30.0% |
| !!! | TGAGTCCCAATTTCTTTTTT+AGG | - | chr1_4:42100769-42100788 | None:intergenic | 30.0% |
| TAAAAAAGAAATTGGGACTC+AGG | + | chr1_4:42100768-42100787 | Msa0163770:intron | 30.0% | |
| TTGTTGATGTATAAGATCCA+TGG | - | chr1_4:42100839-42100858 | None:intergenic | 30.0% | |
| TGTCAACATAACAAAAGAGT+TGG | + | chr1_4:42100863-42100882 | Msa0163770:intron | 30.0% | |
| ! | TTTCAATGGCACTTTTCAAA+AGG | + | chr1_4:42100894-42100913 | Msa0163770:intron | 30.0% |
| TTTCAAAAGGACAAGATGAA+AGG | + | chr1_4:42100907-42100926 | Msa0163770:intron | 30.0% | |
| TGTTACAATAACAGCTTACA+AGG | + | chr1_4:42101383-42101402 | Msa0163770:CDS | 30.0% | |
| AGATTTAACAGTGAACTCAA+AGG | - | chr1_4:42101415-42101434 | None:intergenic | 30.0% | |
| TTGCAGAGAGACTGAAATTA+GGG | - | chr1_4:42098977-42098996 | None:intergenic | 35.0% | |
| GAAATCGAGAGTTTAGAAAG+AGG | - | chr1_4:42099014-42099033 | None:intergenic | 35.0% | |
| AAGAAGATGAATGATGAACC+TGG | - | chr1_4:42099055-42099074 | None:intergenic | 35.0% | |
| TGCAAAGAGTTTCGTTAATC+TGG | - | chr1_4:42099166-42099185 | None:intergenic | 35.0% | |
| AGATTAACGAAACTCTTTGC+AGG | + | chr1_4:42099165-42099184 | Msa0163770:five_prime_UTR | 35.0% | |
| TCGTCTTTGATTAGAAGAGT+CGG | - | chr1_4:42099352-42099371 | None:intergenic | 35.0% | |
| AAATTTAATCACACGTGTCG+TGG | + | chr1_4:42099681-42099700 | Msa0163770:intron | 35.0% | |
| TCTATATGGTGAGAGAAAGT+TGG | - | chr1_4:42099843-42099862 | None:intergenic | 35.0% | |
| TCTCACCATATAGAACTAGA+AGG | + | chr1_4:42099849-42099868 | Msa0163770:intron | 35.0% | |
| CTCACCATATAGAACTAGAA+GGG | + | chr1_4:42099850-42099869 | Msa0163770:intron | 35.0% | |
| GACAAGTAGTCCATAGTAAT+AGG | - | chr1_4:42099946-42099965 | None:intergenic | 35.0% | |
| GAGTGGTGAAAATTTGAGAA+GGG | - | chr1_4:42100166-42100185 | None:intergenic | 35.0% | |
| AGAGTGGTGAAAATTTGAGA+AGG | - | chr1_4:42100167-42100186 | None:intergenic | 35.0% | |
| ACAAAATGGAATATGCAGAG+TGG | - | chr1_4:42100183-42100202 | None:intergenic | 35.0% | |
| GGTATCATGACAACACAAAA+TGG | - | chr1_4:42100197-42100216 | None:intergenic | 35.0% | |
| TTGTCATGATACCTTTGTCT+AGG | + | chr1_4:42100204-42100223 | Msa0163770:exon | 35.0% | |
| TGTCATGATACCTTTGTCTA+GGG | + | chr1_4:42100205-42100224 | Msa0163770:exon | 35.0% | |
| AGATAGGTTATAGAGTGATG+GGG | + | chr1_4:42100281-42100300 | Msa0163770:intron | 35.0% | |
| TTATCCTGCTAAGTTAACAC+TGG | + | chr1_4:42100499-42100518 | Msa0163770:intron | 35.0% | |
| GCCTACCCTAAAAAAGAAAT+TGG | + | chr1_4:42100760-42100779 | Msa0163770:intron | 35.0% | |
| !!! | CCCAATTTCTTTTTTAGGGT+AGG | - | chr1_4:42100764-42100783 | None:intergenic | 35.0% |
| ATTCTTGCATCAGCTAAATC+AGG | + | chr1_4:42100803-42100822 | Msa0163770:intron | 35.0% | |
| TTCTTGCATCAGCTAAATCA+GGG | + | chr1_4:42100804-42100823 | Msa0163770:intron | 35.0% | |
| CCTCATTAGAGATCAAAACA+AGG | - | chr1_4:42101059-42101078 | None:intergenic | 35.0% | |
| !!! | CCTTGTTTTGATCTCTAATG+AGG | + | chr1_4:42101056-42101075 | Msa0163770:intron | 35.0% |
| ! | GATTTAGAAATGGACTCAAG+TGG | - | chr1_4:42101585-42101604 | None:intergenic | 35.0% |
| AATCCATTATTGGTACAGCT+AGG | + | chr1_4:42101601-42101620 | Msa0163770:CDS | 35.0% | |
| ! | ATGCTCTATATTAGTCTAGC+TGG | + | chr1_4:42101909-42101928 | Msa0163770:three_prime_UTR | 35.0% |
| GTTGCAGAGAGACTGAAATT+AGG | - | chr1_4:42098978-42098997 | None:intergenic | 40.0% | |
| ATTTCAGTCTCTCTGCAACT+CGG | + | chr1_4:42098979-42098998 | Msa0163770:five_prime_UTR | 40.0% | |
| TCTCTCTGTATGATTTCTCC+AGG | + | chr1_4:42099034-42099053 | Msa0163770:five_prime_UTR | 40.0% | |
| CAATGTGTTAGTGTTGTGTC+CGG | - | chr1_4:42099624-42099643 | None:intergenic | 40.0% | |
| CACTAACACATTGATATCGG+TGG | + | chr1_4:42099631-42099650 | Msa0163770:intron | 40.0% | |
| AGAACACTCTGATCATATGC+AGG | - | chr1_4:42099781-42099800 | None:intergenic | 40.0% | |
| !! | GCTACCCTTCTAGTTCTATA+TGG | - | chr1_4:42099857-42099876 | None:intergenic | 40.0% |
| ATAGAACTAGAAGGGTAGCA+TGG | + | chr1_4:42099858-42099877 | Msa0163770:intron | 40.0% | |
| CCATAACATATGTACGGTCA+CGG | - | chr1_4:42099885-42099904 | None:intergenic | 40.0% | |
| !! | AACTAGCCACATGCTTTTTG+TGG | + | chr1_4:42099911-42099930 | Msa0163770:intron | 40.0% |
| ! | GAATGACCACAAAAAGCATG+TGG | - | chr1_4:42099920-42099939 | None:intergenic | 40.0% |
| GAGAAGGGATTGAATCACAA+AGG | - | chr1_4:42100151-42100170 | None:intergenic | 40.0% | |
| AGTAACAGTACCCTAGACAA+AGG | - | chr1_4:42100218-42100237 | None:intergenic | 40.0% | |
| AATCAGGGAAACAAAGTCCA+TGG | + | chr1_4:42100819-42100838 | Msa0163770:intron | 40.0% | |
| AGAAAGCCATAAGGTTCAGT+CGG | - | chr1_4:42101311-42101330 | None:intergenic | 40.0% | |
| AGTCTTTGCAGAAAGCCATA+AGG | - | chr1_4:42101320-42101339 | None:intergenic | 40.0% | |
| ATTCAAGCCTGATACACCAA+TGG | + | chr1_4:42101359-42101378 | Msa0163770:CDS | 40.0% | |
| GCTGTTATTGTAACAGCCAT+TGG | - | chr1_4:42101378-42101397 | None:intergenic | 40.0% | |
| CAGAAATTGATGTCCTGGTA+TGG | + | chr1_4:42101806-42101825 | Msa0163770:three_prime_UTR | 40.0% | |
| GTTGTGTCCGTATTGGACAT+GGG | - | chr1_4:42099377-42099396 | None:intergenic | 45.0% | |
| TGTTGTGTCCGTATTGGACA+TGG | - | chr1_4:42099378-42099397 | None:intergenic | 45.0% | |
| TGTCAGTGTTGTGTCCGTAT+TGG | - | chr1_4:42099384-42099403 | None:intergenic | 45.0% | |
| TGACTTCAACAAGGCTAAGC+AGG | - | chr1_4:42099556-42099575 | None:intergenic | 45.0% | |
| TGCCTATGAAGCACAAACAC+CGG | + | chr1_4:42099602-42099621 | Msa0163770:intron | 45.0% | |
| !! | TGAGAGAAAGTTGGTAGCTC+TGG | - | chr1_4:42099834-42099853 | None:intergenic | 45.0% |
| CCGTGACCGTACATATGTTA+TGG | + | chr1_4:42099882-42099901 | Msa0163770:intron | 45.0% | |
| AGAAATTGGGACTCAGGAGA+TGG | + | chr1_4:42100774-42100793 | Msa0163770:intron | 45.0% | |
| AGGACAAGATGAAAGGCTGT+TGG | + | chr1_4:42100914-42100933 | Msa0163770:intron | 45.0% | |
| ATTGTCGCTGCTACCACTTT+CGG | - | chr1_4:42101222-42101241 | None:intergenic | 45.0% | |
| !! | TCAGTACCGACTGAACCTTA+TGG | + | chr1_4:42101302-42101321 | Msa0163770:CDS | 45.0% |
| TCTGCAAAGACTTCAACGCA+CGG | + | chr1_4:42101328-42101347 | Msa0163770:CDS | 45.0% | |
| GTAACAGCCATTGGTGTATC+AGG | - | chr1_4:42101369-42101388 | None:intergenic | 45.0% | |
| TTAAATCTCCTTCCGTCTCG+TGG | + | chr1_4:42101427-42101446 | Msa0163770:CDS | 45.0% | |
| TTTCTTCAGGTACCACGAGA+CGG | - | chr1_4:42101442-42101461 | None:intergenic | 45.0% | |
| !! | AAAGCTGCGGGTATCGAATT+GGG | + | chr1_4:42101459-42101478 | Msa0163770:CDS | 45.0% |
| ACAGTCTGATCCTTACTTGC+AGG | + | chr1_4:42101554-42101573 | Msa0163770:CDS | 45.0% | |
| CAGTCTGATCCTTACTTGCA+GGG | + | chr1_4:42101555-42101574 | Msa0163770:CDS | 45.0% | |
| GCTCCTAGCTGTACCAATAA+TGG | - | chr1_4:42101607-42101626 | None:intergenic | 45.0% | |
| TATTGGTACAGCTAGGAGCA+TGG | + | chr1_4:42101608-42101627 | Msa0163770:CDS | 45.0% | |
| ! | ATTGGTACAGCTAGGAGCAT+GGG | + | chr1_4:42101609-42101628 | Msa0163770:CDS | 45.0% |
| CTACTTGGCCACTCACAAAA+TGG | + | chr1_4:42101745-42101764 | Msa0163770:three_prime_UTR | 45.0% | |
| ! | GCACAGAACCATTTTGTGAG+TGG | - | chr1_4:42101756-42101775 | None:intergenic | 45.0% |
| AGTGGCAGAAATTGATGTCC+TGG | + | chr1_4:42101801-42101820 | Msa0163770:three_prime_UTR | 45.0% | |
| GACGAGTCCCATGTCCAATA+CGG | + | chr1_4:42099367-42099386 | Msa0163770:intron | 50.0% | |
| CAACAAGGCTAAGCAGGCAA+AGG | - | chr1_4:42099550-42099569 | None:intergenic | 50.0% | |
| GTCCGGTGTTTGTGCTTCAT+AGG | - | chr1_4:42099607-42099626 | None:intergenic | 50.0% | |
| CACGCCAGTGTTAACTTAGC+AGG | - | chr1_4:42100506-42100525 | None:intergenic | 50.0% | |
| CTGCTAAGTTAACACTGGCG+TGG | + | chr1_4:42100504-42100523 | Msa0163770:intron | 50.0% | |
| !! | TCGTTGATGGCTGGAAGTAG+CGG | - | chr1_4:42101191-42101210 | None:intergenic | 50.0% |
| TTCGGAACGCTCATCGTTGA+TGG | - | chr1_4:42101204-42101223 | None:intergenic | 50.0% | |
| AACGATGAGCGTTCCGAAAG+TGG | + | chr1_4:42101206-42101225 | Msa0163770:CDS | 50.0% | |
| AAGTGGTAGCAGCGACAATC+CGG | + | chr1_4:42101223-42101242 | Msa0163770:CDS | 50.0% | |
| GTGGTACCTGAAGAAAGCTG+CGG | + | chr1_4:42101446-42101465 | Msa0163770:CDS | 50.0% | |
| TGGTACCTGAAGAAAGCTGC+GGG | + | chr1_4:42101447-42101466 | Msa0163770:CDS | 50.0% | |
| !! | GAAAGCTGCGGGTATCGAAT+TGG | + | chr1_4:42101458-42101477 | Msa0163770:CDS | 50.0% |
| ATACACGTGCCGAAGTGACA+GGG | - | chr1_4:42101517-42101536 | None:intergenic | 50.0% | |
| GCACGTGTATGAGATCGCTA+AGG | + | chr1_4:42101527-42101546 | Msa0163770:CDS | 50.0% | |
| AGTGGCATACCCTGCAAGTA+AGG | - | chr1_4:42101567-42101586 | None:intergenic | 50.0% | |
| CAAAGAGTCCGTGTCGTGTC+CGG | + | chr1_4:42099455-42099474 | Msa0163770:intron | 55.0% | |
| ! | TGAAGCACTAGCGGAGACAC+CGG | - | chr1_4:42099477-42099496 | None:intergenic | 55.0% |
| !! | GAACGCTCATCGTTGATGGC+TGG | - | chr1_4:42101200-42101219 | None:intergenic | 55.0% |
| ATCCGGTTGAGAGTTCCAGC+TGG | + | chr1_4:42101240-42101259 | Msa0163770:CDS | 55.0% | |
| CTCCAGCTGGAACTCTCAAC+CGG | - | chr1_4:42101245-42101264 | None:intergenic | 55.0% | |
| TTCAGGTACCACGAGACGGA+AGG | - | chr1_4:42101438-42101457 | None:intergenic | 55.0% | |
| CGATACCCGCAGCTTTCTTC+AGG | - | chr1_4:42101455-42101474 | None:intergenic | 55.0% | |
| !! | GAATTGGGAAGTACCCGTCC+CGG | + | chr1_4:42101474-42101493 | Msa0163770:CDS | 55.0% |
| CATACACGTGCCGAAGTGAC+AGG | - | chr1_4:42101518-42101537 | None:intergenic | 55.0% | |
| AGAGTCGGTGCAACGTGCTG+CGG | - | chr1_4:42099337-42099356 | None:intergenic | 60.0% | |
| CGGTTGAGAGTTCCAGCTGG+AGG | + | chr1_4:42101243-42101262 | Msa0163770:CDS | 60.0% | |
| !! | AGTCGGTACTGACCTAGCGC+AGG | - | chr1_4:42101294-42101313 | None:intergenic | 60.0% |
| CGGAGACACCGGACACGACA+CGG | - | chr1_4:42099466-42099485 | None:intergenic | 65.0% | |
| ! | TCCAGCTGGAGGAGCACGTC+CGG | + | chr1_4:42101254-42101273 | Msa0163770:CDS | 65.0% |
| TGACCTAGCGCAGGTCCCAC+AGG | - | chr1_4:42101285-42101304 | None:intergenic | 65.0% | |
| TGGCGGTCACATGACCGGGA+CGG | - | chr1_4:42101491-42101510 | None:intergenic | 65.0% | |
| ! | GAGGTGGCGGTCACATGACC+GGG | - | chr1_4:42101495-42101514 | None:intergenic | 65.0% |
| ! | GGAGGTGGCGGTCACATGAC+CGG | - | chr1_4:42101496-42101515 | None:intergenic | 65.0% |
| CCGAAGTGACAGGGAGGTGG+CGG | - | chr1_4:42101508-42101527 | None:intergenic | 65.0% | |
| ! | CCGCCACCTCCCTGTCACTT+CGG | + | chr1_4:42101505-42101524 | Msa0163770:CDS | 65.0% |
| GTGCCGAAGTGACAGGGAGG+TGG | - | chr1_4:42101511-42101530 | None:intergenic | 65.0% | |
| CACGTGCCGAAGTGACAGGG+AGG | - | chr1_4:42101514-42101533 | None:intergenic | 65.0% | |
| CCTAGCGCAGGTCCCACAGG+AGG | - | chr1_4:42101282-42101301 | None:intergenic | 70.0% | |
| CCTCCTGTGGGACCTGCGCT+AGG | + | chr1_4:42101279-42101298 | Msa0163770:CDS | 70.0% | |
| GGCGGTCACATGACCGGGAC+GGG | - | chr1_4:42101490-42101509 | None:intergenic | 70.0% | |
| GCCGGACGTGCTCCTCCAGC+TGG | - | chr1_4:42101258-42101277 | None:intergenic | 75.0% | |
| AGCACGTCCGGCGCCTCCTG+TGG | + | chr1_4:42101266-42101285 | Msa0163770:CDS | 75.0% | |
| GCACGTCCGGCGCCTCCTGT+GGG | + | chr1_4:42101267-42101286 | Msa0163770:CDS | 75.0% | |
| ! | GCAGGTCCCACAGGAGGCGC+CGG | - | chr1_4:42101276-42101295 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42098949 | 42102002 | 42098949 | ID=Msa0163770;Name=Msa0163770 |
| chr1_4 | mRNA | 42098949 | 42102002 | 42098949 | ID=Msa0163770-mRNA-1;Parent=Msa0163770;Name=Msa0163770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=239|0.33|0.75|0.75|0|0.25|4|343|163 |
| chr1_4 | exon | 42098949 | 42099055 | 42098949 | ID=Msa0163770-mRNA-1:exon:12191;Parent=Msa0163770-mRNA-1 |
| chr1_4 | exon | 42099135 | 42099186 | 42099135 | ID=Msa0163770-mRNA-1:exon:12192;Parent=Msa0163770-mRNA-1 |
| chr1_4 | exon | 42100129 | 42100226 | 42100129 | ID=Msa0163770-mRNA-1:exon:12193;Parent=Msa0163770-mRNA-1 |
| chr1_4 | exon | 42101186 | 42102002 | 42101186 | ID=Msa0163770-mRNA-1:exon:12194;Parent=Msa0163770-mRNA-1 |
| chr1_4 | five_prime_UTR | 42098949 | 42099055 | 42098949 | ID=Msa0163770-mRNA-1:five_prime_utr;Parent=Msa0163770-mRNA-1 |
| chr1_4 | five_prime_UTR | 42099135 | 42099186 | 42099135 | ID=Msa0163770-mRNA-1:five_prime_utr;Parent=Msa0163770-mRNA-1 |
| chr1_4 | five_prime_UTR | 42100129 | 42100208 | 42100129 | ID=Msa0163770-mRNA-1:five_prime_utr;Parent=Msa0163770-mRNA-1 |
| chr1_4 | CDS | 42100209 | 42100226 | 42100209 | ID=Msa0163770-mRNA-1:cds;Parent=Msa0163770-mRNA-1 |
| chr1_4 | CDS | 42101186 | 42101659 | 42101186 | ID=Msa0163770-mRNA-1:cds;Parent=Msa0163770-mRNA-1 |
| chr1_4 | three_prime_UTR | 42101660 | 42102002 | 42101660 | ID=Msa0163770-mRNA-1:three_prime_utr;Parent=Msa0163770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
