AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048070 MtrunA17_Chr7g0216561 98.917 277 3 0 1 277 1 277 0.0 557
Msa1048070 MtrunA17_Chr6g0452811 68.953 277 84 1 3 277 2 278 5.43e-144 405
Msa1048070 MtrunA17_Chr8g0362621 58.029 274 115 0 4 277 3 276 1.65e-116 335
Msa1048070 MtrunA17_Chr5g0401201 50.545 275 136 0 3 277 2 276 6.44e-91 270
Msa1048070 MtrunA17_Chr1g0152591 42.238 277 160 0 1 277 1 277 1.50e-75 231
Msa1048070 MtrunA17_Chr4g0072511 42.086 278 158 2 3 277 2 279 2.47e-74 228
Msa1048070 MtrunA17_Chr4g0060181 34.397 282 139 6 3 277 2 244 3.56e-48 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048070 AT3G01280.1 61.679 274 105 0 4 277 3 276 9.98e-128 364
Msa1048070 AT5G15090.1 59.854 274 108 1 4 277 3 274 8.92e-124 354
Msa1048070 AT5G15090.2 59.854 274 108 1 4 277 3 274 8.92e-124 354
Msa1048070 AT5G67500.3 48.364 275 142 0 3 277 2 276 1.00e-89 268
Msa1048070 AT5G67500.1 47.368 266 140 0 3 268 2 267 4.03e-84 254
Msa1048070 AT5G67500.2 44.040 302 142 1 3 277 2 303 1.51e-83 253
Msa1048070 AT5G57490.1 43.750 272 151 1 6 277 5 274 1.42e-80 244
Msa1048070 AT3G49920.1 37.091 275 123 4 3 277 2 226 8.44e-48 159
Msa1048070 AT3G49920.2 43.443 122 60 2 3 115 2 123 5.10e-23 92.0
Msa1048070 AT3G49920.4 43.443 122 60 2 3 115 2 123 5.10e-23 92.0
Msa1048070 AT3G49920.3 52.632 76 36 0 3 78 2 77 8.40e-20 82.8
Msa1048070 AT5G37610.1 31.081 148 98 2 112 257 2 147 6.56e-19 82.0

Find 95 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGTTGATTCTCTTCT+TGG 0.147123 7_2:-9579260 Msa1048070:three_prime_UTR
AGAAAGGTTAGAAATAAATT+AGG 0.182856 7_2:-9583955 Msa1048070:five_prime_UTR
CAAGATAGATCAAAACTATC+AGG 0.275931 7_2:+9579326 None:intergenic
GAAATGGTGATGAGTGATTT+AGG 0.306493 7_2:+9579414 None:intergenic
ATTCACAGAAACATGATTCT+TGG 0.320636 7_2:+9578975 None:intergenic
GGAACTAATGCTCTTGCATT+TGG 0.326707 7_2:-9580343 Msa1048070:CDS
TGCTGTATTTGAACTCTTGT+TGG 0.342551 7_2:-9578943 Msa1048070:three_prime_UTR
GTTAGAAATAAATTAGGGTT+CGG 0.344296 7_2:-9583949 Msa1048070:five_prime_UTR
TTAGAAATAAATTAGGGTTC+GGG 0.353146 7_2:-9583948 Msa1048070:five_prime_UTR
ATGAAATTGAGGTAGGCTTT+AGG 0.354453 7_2:-9579301 Msa1048070:three_prime_UTR
AGGTAGAAACAGTGAACTTC+TGG 0.358147 7_2:+9583344 None:intergenic
GAAAGGTTAGAAATAAATTA+GGG 0.360417 7_2:-9583954 Msa1048070:five_prime_UTR
AACCCAGTTGTCAACTTATC+TGG 0.362397 7_2:-9580373 Msa1048070:CDS
TGCTAAGGTTGGATTGAGTT+TGG 0.368402 7_2:-9579358 Msa1048070:CDS
ACACCAGATAAGTTGACAAC+TGG 0.376037 7_2:+9580370 None:intergenic
AAAGTTCCTGATCCAGCATC+TGG 0.383518 7_2:-9580621 Msa1048070:CDS
TTGATGTTGATTCTCTTCTT+GGG 0.390960 7_2:-9579259 Msa1048070:three_prime_UTR
GACGCCACTCGTGCTGGATA+AGG 0.393225 7_2:+9579436 None:intergenic
TTTCTTATGATACCAAACTT+AGG 0.414471 7_2:-9580312 Msa1048070:CDS
AAAGAGACTTGTTGAGCCTC+TGG 0.414752 7_2:+9579142 None:intergenic
ACGCCACTCGTGCTGGATAA+GGG 0.420370 7_2:+9579437 None:intergenic
TTCTTATGATACCAAACTTA+GGG 0.427175 7_2:-9580311 Msa1048070:CDS
AAGAAGTTATCTACTTCTGT+TGG 0.430855 7_2:-9578874 Msa1048070:three_prime_UTR
GGGCATTTAAGAGTAACATT+TGG 0.432897 7_2:+9579163 None:intergenic
TTCACAGAAACATGATTCTT+GGG 0.441313 7_2:+9578976 None:intergenic
GGCACTTGCCTTGGCTGAGT+TGG 0.447115 7_2:+9579458 None:intergenic
CTGGAGTAAGCGGCAACATT+GGG 0.447370 7_2:-9580405 Msa1048070:CDS
CACTGCTGTTGGTGTTGACA+TGG 0.447929 7_2:-9579568 Msa1048070:CDS
CAACCTTGTAGAAATAAAGT+AGG 0.449236 7_2:-9579196 Msa1048070:three_prime_UTR
ACCTTCCCAGATGCTGGATC+AGG 0.454785 7_2:+9580615 None:intergenic
ACTCAAAGAGTATCAATTCT+CGG 0.455409 7_2:+9579112 None:intergenic
GGTGTCTAGCTCAGTAGAAA+TGG 0.457756 7_2:+9579398 None:intergenic
AAAGAAAGGTGAACTGTTTG+TGG 0.462533 7_2:-9581227 Msa1048070:CDS
TATCTTACCTTCCCAGATGC+TGG 0.465903 7_2:+9580609 None:intergenic
GCTGGAGTAAGCGGCAACAT+TGG 0.466742 7_2:-9580406 Msa1048070:CDS
CTGTTAGTGAGCGTTTGAAA+TGG 0.467289 7_2:-9579013 Msa1048070:three_prime_UTR
CTTCACACCAGGAGCAGGTT+CGG 0.471845 7_2:+9580659 None:intergenic
CTGGATAAGGGCACTTGCCT+TGG 0.473358 7_2:+9579449 None:intergenic
CGACCCTTCAATGTTGTCAA+TGG 0.474649 7_2:+9579486 None:intergenic
TTTATCAAAGATGACTTGCT+TGG 0.483885 7_2:-9580259 Msa1048070:CDS
GAATCAAGCTATGGCTGCTA+AGG 0.489854 7_2:-9583855 Msa1048070:exon
CTACAGGCTATCACATCATC+AGG 0.489864 7_2:-9581253 Msa1048070:intron
GAGCTAACAAAATCTAATGT+TGG 0.491591 7_2:-9580289 Msa1048070:CDS
AGAATAATGGAAAATTTCAA+TGG 0.493195 7_2:+9578903 None:intergenic
TCTATCTTGTCATGAAATTG+AGG 0.493322 7_2:-9579312 Msa1048070:three_prime_UTR
GGATCCATTGACAACATTGA+AGG 0.493835 7_2:-9579490 Msa1048070:CDS
CAATACTTGCATGACTATGC+TGG 0.495247 7_2:-9580424 Msa1048070:CDS
TTAGCAGCCATAGCTTGATT+CGG 0.496192 7_2:+9583857 None:intergenic
TCTTGGGTAAGAAATGTTCA+AGG 0.505272 7_2:-9579243 Msa1048070:three_prime_UTR
ACATCATCAGGTACAAAGAA+AGG 0.517422 7_2:-9581241 Msa1048070:CDS
CCAACAGCAGTGTTGGTCAC+GGG 0.519304 7_2:+9579579 None:intergenic
AAACCTACTTTATTTCTACA+AGG 0.523937 7_2:+9579193 None:intergenic
ACTAATGCTCTTGCATTTGG+TGG 0.539456 7_2:-9580340 Msa1048070:CDS
AAGAAAGGTGAACTGTTTGT+GGG 0.540867 7_2:-9581226 Msa1048070:CDS
ACTGTCACCGAACCTGCTCC+TGG 0.544931 7_2:-9580666 Msa1048070:CDS
CACCAGATAAGTTGACAACT+GGG 0.545239 7_2:+9580371 None:intergenic
GCCGATGTCAGAGTAGAGAC+CGG 0.550627 7_2:+9583829 None:intergenic
CTTATAATAGCCTTCACACC+AGG 0.553164 7_2:+9580648 None:intergenic
TCTTGTCATGAAATTGAGGT+AGG 0.553266 7_2:-9579308 Msa1048070:three_prime_UTR
ACTTGGTGTCCAACATGCAT+TGG 0.554631 7_2:-9579511 Msa1048070:CDS
CCGATGTCAGAGTAGAGACC+GGG 0.556425 7_2:+9583830 None:intergenic
GTCAACACCAACAGCAGTGT+TGG 0.558396 7_2:+9579572 None:intergenic
AAGAGACTTGTTGAGCCTCT+GGG 0.558634 7_2:+9579143 None:intergenic
ATAGCCTTCACACCAGGAGC+AGG 0.561752 7_2:+9580654 None:intergenic
GATCCATTGACAACATTGAA+GGG 0.562746 7_2:-9579489 Msa1048070:CDS
GTTTCTACCTACTCACCCAC+TGG 0.566511 7_2:-9583331 Msa1048070:CDS
CCCGGTCTCTACTCTGACAT+CGG 0.568162 7_2:-9583830 Msa1048070:CDS
GTTTCCACCGAATCAAGCTA+TGG 0.571083 7_2:-9583864 Msa1048070:exon
GCTATGGCTGCTAAGGGTCC+CGG 0.572243 7_2:-9583848 Msa1048070:CDS
CATGACTATGCTGGAGTAAG+CGG 0.575977 7_2:-9580415 Msa1048070:CDS
ACCAACAGCAGTGTTGGTCA+CGG 0.576428 7_2:+9579578 None:intergenic
CGAACCTGCTCCTGGTGTGA+AGG 0.577083 7_2:-9580658 Msa1048070:CDS
GCAGCCATAGCTTGATTCGG+TGG 0.579818 7_2:+9583860 None:intergenic
AAGATAGATCAAAACTATCA+GGG 0.588944 7_2:+9579327 None:intergenic
AAGTTCCTGATCCAGCATCT+GGG 0.591599 7_2:-9580620 Msa1048070:CDS
GGCCATTGAAAAGAGTGCTA+AGG 0.593327 7_2:-9579373 Msa1048070:CDS
ATTGAAAAGAGTGCTAAGGT+TGG 0.595148 7_2:-9579369 Msa1048070:CDS
TTTGTGTGCAGGAATGAGAA+AGG 0.601343 7_2:-9579639 Msa1048070:intron
GTGCCCTTATCCAGCACGAG+TGG 0.606194 7_2:-9579440 Msa1048070:CDS
TCCTGATCCAGCATCTGGGA+AGG 0.609354 7_2:-9580616 Msa1048070:intron
CCCGTGACCAACACTGCTGT+TGG 0.613752 7_2:-9579579 Msa1048070:CDS
CAACAGCAGTGTTGGTCACG+GGG 0.615828 7_2:+9579580 None:intergenic
TCGTATCACCAACTCAGCCA+AGG 0.624155 7_2:-9579466 Msa1048070:CDS
TCAATGGATCCAATGCATGT+TGG 0.627022 7_2:+9579502 None:intergenic
AATTCAACTCACAACTCCAG+TGG 0.629856 7_2:+9583315 None:intergenic
AGAGAGAACAACTTCACACT+TGG 0.632696 7_2:-9579528 Msa1048070:CDS
AATCAAGCTATGGCTGCTAA+GGG 0.637442 7_2:-9583854 Msa1048070:exon
ATTCAACTCACAACTCCAGT+GGG 0.638284 7_2:+9583316 None:intergenic
TGTGTCTACTTTGAAGTCAG+CGG 0.653058 7_2:+9581168 None:intergenic
CACAACTCCAGTGGGTGAGT+AGG 0.656486 7_2:+9583324 None:intergenic
ACTGCTGTTGGTGTTGACAT+GGG 0.661896 7_2:-9579567 Msa1048070:CDS
TTCTACTGAGCTAGACACCA+AGG 0.676467 7_2:-9579394 Msa1048070:CDS
GACATCGGCAAGAAAGCCAG+AGG 0.689867 7_2:-9583815 Msa1048070:intron
TTTCAAACGCTCACTAACAG+CGG 0.696831 7_2:+9579016 None:intergenic
TGTTACTCTTAAATGCCCAG+AGG 0.747944 7_2:-9579158 Msa1048070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATGAAATTTGTAT+TGG - chr7_2:9579156-9579175 Msa1048070:three_prime_UTR 10.0%
!!! TTTTTAATGAAATTTGTATT+GGG - chr7_2:9579157-9579176 Msa1048070:three_prime_UTR 10.0%
!!! ATTTTTTATGAATTTTGTAA+TGG - chr7_2:9579299-9579318 Msa1048070:three_prime_UTR 10.0%
!!! TTTTTTATGAATTTTGTAAT+GGG - chr7_2:9579300-9579319 Msa1048070:three_prime_UTR 10.0%
!!! AAATTTTTTTTTTTGTTTGT+AGG + chr7_2:9580523-9580542 None:intergenic 10.0%
!!! TGTTTTTTTAGTTGAAATTT+TGG - chr7_2:9579059-9579078 Msa1048070:three_prime_UTR 15.0%
!!! TTGAAATTTTGGTTTTTTTT+TGG - chr7_2:9579070-9579089 Msa1048070:three_prime_UTR 15.0%
!!! GTTTTTTTAATGATTTTGTA+TGG - chr7_2:9579184-9579203 Msa1048070:three_prime_UTR 15.0%
!!! AAATTTTCGATTTTCATTTT+TGG - chr7_2:9579260-9579279 Msa1048070:three_prime_UTR 15.0%
!!! AATTTTCGATTTTCATTTTT+GGG - chr7_2:9579261-9579280 Msa1048070:three_prime_UTR 15.0%
!!! TTGATTTTTTTTTTTGTTGT+TGG - chr7_2:9579338-9579357 Msa1048070:exon 15.0%
!!! TGATTTTTTTTTTTGTTGTT+GGG - chr7_2:9579339-9579358 Msa1048070:exon 15.0%
!!! TTGCTATATATTTTTTTGAA+AGG - chr7_2:9579688-9579707 Msa1048070:intron 15.0%
!! TTATTTGAAAATGAAAGAAA+TGG - chr7_2:9579734-9579753 Msa1048070:intron 15.0%
!!! ATTTATGTTTTAACCATTTT+TGG - chr7_2:9580232-9580251 Msa1048070:intron 15.0%
!! ATAATCTTCAAAAGTAAATA+AGG + chr7_2:9580596-9580615 None:intergenic 15.0%
!!! TATTTACTTTTGAAGATTAT+TGG - chr7_2:9580596-9580615 Msa1048070:intron 15.0%
!!! ATTTACTTTTGAAGATTATT+GGG - chr7_2:9580597-9580616 Msa1048070:intron 15.0%
!!! TTTTGTTTATTTCATTTTCA+TGG - chr7_2:9580833-9580852 Msa1048070:intron 15.0%
!! TTGACAAATTTATTTGATAA+AGG - chr7_2:9581182-9581201 Msa1048070:CDS 15.0%
!!! TTATTTCTAACCTTTCTTTT+TGG + chr7_2:9578848-9578867 None:intergenic 20.0%
!! AGAAAGGTTAGAAATAAATT+AGG - chr7_2:9578851-9578870 Msa1048070:three_prime_UTR 20.0%
!! GAAAGGTTAGAAATAAATTA+GGG - chr7_2:9578852-9578871 Msa1048070:three_prime_UTR 20.0%
!!! TCTTTTGATGAAATTTGAAA+TGG - chr7_2:9579218-9579237 Msa1048070:three_prime_UTR 20.0%
!!! CTTTTGATGAAATTTGAAAT+GGG - chr7_2:9579219-9579238 Msa1048070:three_prime_UTR 20.0%
!!! GATTTTTTTTTTTGTTGTTG+GGG - chr7_2:9579340-9579359 Msa1048070:exon 20.0%
!! TTACTTTATGTATGGTTAAT+TGG - chr7_2:9579366-9579385 Msa1048070:CDS 20.0%
!! TGATGAAGTTAATAAAATCA+AGG - chr7_2:9579603-9579622 Msa1048070:CDS 20.0%
!!! TTTTTTAGTTATTTGCTGAA+TGG - chr7_2:9579817-9579836 Msa1048070:intron 20.0%
!!! ATGTATTTCTTTTGTTGAAA+AGG - chr7_2:9579925-9579944 Msa1048070:intron 20.0%
!!! CATGTTATGTTCTTTAAAAT+GGG - chr7_2:9579959-9579978 Msa1048070:intron 20.0%
!!! TAGATTGTAGTTTTTTTGTT+CGG - chr7_2:9580074-9580093 Msa1048070:intron 20.0%
!!! TTTTTTGTTCGGATAAAAAA+TGG - chr7_2:9580085-9580104 Msa1048070:intron 20.0%
!!! AATCAAGTTTAGTTTATACT+AGG + chr7_2:9580215-9580234 None:intergenic 20.0%
!! GTTTATGTAATGTAATGTAT+CGG - chr7_2:9581460-9581479 Msa1048070:intron 20.0%
!! AATTATTTATTGCTAAACAG+AGG + chr7_2:9581506-9581525 None:intergenic 20.0%
!! ATAAAACAATTCAATGTCAA+AGG + chr7_2:9581823-9581842 None:intergenic 20.0%
!! AAATTAATATTGACACATAG+CGG - chr7_2:9582689-9582708 Msa1048070:intron 20.0%
!!! TAAATTTTCTTGTATGACTA+TGG - chr7_2:9583733-9583752 Msa1048070:intron 20.0%
!!! AGAATAATGGAAAATTTCAA+TGG + chr7_2:9583906-9583925 None:intergenic 20.0%
! AAAATCTTGTCCAAAAAGAA+AGG - chr7_2:9578835-9578854 Msa1048070:three_prime_UTR 25.0%
! GTTAGAAATAAATTAGGGTT+CGG - chr7_2:9578857-9578876 Msa1048070:three_prime_UTR 25.0%
! TTAGAAATAAATTAGGGTTC+GGG - chr7_2:9578858-9578877 Msa1048070:three_prime_UTR 25.0%
!!! TGTTTTGGTAAAATCTGTAA+TGG - chr7_2:9579105-9579124 Msa1048070:three_prime_UTR 25.0%
!!! GTTTTGGTAAAATCTGTAAT+GGG - chr7_2:9579106-9579125 Msa1048070:three_prime_UTR 25.0%
!!! ATGGGTTTTGTTTGTTTTAT+TGG - chr7_2:9579237-9579256 Msa1048070:three_prime_UTR 25.0%
!! TGGTTTGATGAAATTTTTGA+TGG - chr7_2:9579391-9579410 Msa1048070:CDS 25.0%
!! GGTTTGATGAAATTTTTGAT+GGG - chr7_2:9579392-9579411 Msa1048070:CDS 25.0%
! ATATAGCAAAAATGCAACTA+AGG + chr7_2:9579677-9579696 None:intergenic 25.0%
!! GCATGTTATGTTCTTTAAAA+TGG - chr7_2:9579958-9579977 Msa1048070:intron 25.0%
!!! TGTTCTTTAAAATGGGAAAA+AGG - chr7_2:9579966-9579985 Msa1048070:intron 25.0%
!!! GTTCTTTAAAATGGGAAAAA+GGG - chr7_2:9579967-9579986 Msa1048070:intron 25.0%
! TAAAGAAACATTTAGGGAAA+AGG + chr7_2:9580132-9580151 None:intergenic 25.0%
! TGCAACTAAAGAAACATTTA+GGG + chr7_2:9580138-9580157 None:intergenic 25.0%
! TTGCAACTAAAGAAACATTT+AGG + chr7_2:9580139-9580158 None:intergenic 25.0%
! CTACTTGTAAAATCCAAAAA+TGG + chr7_2:9580248-9580267 None:intergenic 25.0%
! TTTAATGTAAATGCAAAGTC+TGG - chr7_2:9580293-9580312 Msa1048070:CDS 25.0%
!!! CATTTTTAGCTATAGTTTGT+TGG - chr7_2:9580759-9580778 Msa1048070:intron 25.0%
! ACAAAAAAAACCTAAAGTGA+AGG + chr7_2:9580819-9580838 None:intergenic 25.0%
! CACAGAAAATTATGCAAAAA+AGG + chr7_2:9581107-9581126 None:intergenic 25.0%
!! TTTGCATAATTTTCTGTGTT+TGG - chr7_2:9581109-9581128 Msa1048070:intron 25.0%
! GTGAAAAGATTATAGGAATA+TGG + chr7_2:9582075-9582094 None:intergenic 25.0%
! CGAAAACTTATGATGTAAAA+TGG + chr7_2:9582228-9582247 None:intergenic 25.0%
!! TTTGTTCTGTTTTATGAAAC+AGG - chr7_2:9582351-9582370 Msa1048070:intron 25.0%
! TTTCTTATGATACCAAACTT+AGG - chr7_2:9582494-9582513 Msa1048070:intron 25.0%
! TTCTTATGATACCAAACTTA+GGG - chr7_2:9582495-9582514 Msa1048070:intron 25.0%
! AGTAGAACTATCATATGTAA+TGG + chr7_2:9582665-9582684 None:intergenic 25.0%
! CAATAATGCACATTTAATCT+CGG - chr7_2:9582857-9582876 Msa1048070:intron 25.0%
! ACAAAAACAGGTATACTTAA+GGG + chr7_2:9582916-9582935 None:intergenic 25.0%
! TACAAAAACAGGTATACTTA+AGG + chr7_2:9582917-9582936 None:intergenic 25.0%
!! TTTTGTGTTGGATTATAGTA+TGG - chr7_2:9582968-9582987 Msa1048070:intron 25.0%
! TTTGTGTTGGATTATAGTAT+GGG - chr7_2:9582969-9582988 Msa1048070:intron 25.0%
! ACAAAAACAGGTATACTTAA+GGG + chr7_2:9582916-9582935 None:intergenic 25.0%
! TACAAAAACAGGTATACTTA+AGG + chr7_2:9582917-9582936 None:intergenic 25.0%
! TTTGTGTTGGATTATAGTAT+GGG - chr7_2:9582969-9582988 Msa1048070:intron 25.0%
! ACAAAAACAGGTATACTTAA+GGG + chr7_2:9582916-9582935 None:intergenic 25.0%
! TACAAAAACAGGTATACTTA+AGG + chr7_2:9582917-9582936 None:intergenic 25.0%
! AAGATAGATCAAAACTATCA+GGG + chr7_2:9583482-9583501 None:intergenic 25.0%
!!! AAACCTACTTTATTTCTACA+AGG + chr7_2:9583616-9583635 None:intergenic 25.0%
!! ACTTCTTTTTGACAGAATAA+TGG + chr7_2:9583919-9583938 None:intergenic 25.0%
!!! ATGGGTTTTGTTTGTTTTGT+TGG - chr7_2:9579124-9579143 Msa1048070:three_prime_UTR 30.0%
!!! AATTTTGTAATGGGTACTGT+TGG - chr7_2:9579309-9579328 Msa1048070:three_prime_UTR 30.0%
! TGGGGTATTTACTTTATGTA+TGG - chr7_2:9579358-9579377 Msa1048070:CDS 30.0%
TTATGTATGGTTAATTGGTG+TGG - chr7_2:9579371-9579390 Msa1048070:CDS 30.0%
! TTTTGTAGATCTGTTGTTCA+AGG - chr7_2:9579426-9579445 Msa1048070:CDS 30.0%
!! TTCAGTGTTTAGCTTGTAAT+TGG - chr7_2:9579538-9579557 Msa1048070:CDS 30.0%
!! TCAGTGTTTAGCTTGTAATT+GGG - chr7_2:9579539-9579558 Msa1048070:CDS 30.0%
AAACCACATAAACACAACAA+AGG + chr7_2:9579774-9579793 None:intergenic 30.0%
!!! TCTCTGTATGTTGTTTTAGT+TGG - chr7_2:9579866-9579885 Msa1048070:intron 30.0%
ATGTTTCTTTAGTTGCAAGA+TGG - chr7_2:9580141-9580160 Msa1048070:intron 30.0%
CAAATATCAAAACGTGCTTT+AGG - chr7_2:9580570-9580589 Msa1048070:intron 30.0%
!! ACTTTTGAAGATTATTGGGT+CGG - chr7_2:9580601-9580620 Msa1048070:intron 30.0%
GTACAAAATTGCACAAATTC+AGG - chr7_2:9580732-9580751 Msa1048070:intron 30.0%
CTACATTATAAGTGCAACAA+CGG + chr7_2:9580902-9580921 None:intergenic 30.0%
AGGAAATCAATGCAAATTAC+AGG + chr7_2:9581021-9581040 None:intergenic 30.0%
! TAGAAGTTGATCTATCAAGA+GGG + chr7_2:9581071-9581090 None:intergenic 30.0%
! ATAGAAGTTGATCTATCAAG+AGG + chr7_2:9581072-9581091 None:intergenic 30.0%
TTAATCGTTTCGGATTGTTA+TGG - chr7_2:9581291-9581310 Msa1048070:intron 30.0%
AAAGCGATATGAATACAATG+TGG + chr7_2:9581352-9581371 None:intergenic 30.0%
!! ATTCATATCGCTTTTAAGTG+TGG - chr7_2:9581358-9581377 Msa1048070:intron 30.0%
!! TTAGGTTGAAGTTTACGTAA+TGG - chr7_2:9581433-9581452 Msa1048070:intron 30.0%
! GTAGTTTTTGTTCTTCAACT+GGG + chr7_2:9581617-9581636 None:intergenic 30.0%
! TGTAGTTTTTGTTCTTCAAC+TGG + chr7_2:9581618-9581637 None:intergenic 30.0%
AGATAAGAACAGATTGACTA+GGG + chr7_2:9581882-9581901 None:intergenic 30.0%
!! CTTGTTTCTTTTGTTTCAAC+CGG - chr7_2:9581955-9581974 Msa1048070:intron 30.0%
TTTGCATGTAAAGGAAAAAC+CGG + chr7_2:9581977-9581996 None:intergenic 30.0%
CACTTCAGTGAAAAGATTAT+AGG + chr7_2:9582082-9582101 None:intergenic 30.0%
AACAAACAATTTAACAGCCA+TGG + chr7_2:9582337-9582356 None:intergenic 30.0%
GAGCTAACAAAATCTAATGT+TGG - chr7_2:9582517-9582536 Msa1048070:intron 30.0%
!! TTTATCAAAGATGACTTGCT+TGG - chr7_2:9582547-9582566 Msa1048070:intron 30.0%
TTTCACACTAACATGAATGT+TGG - chr7_2:9582639-9582658 Msa1048070:intron 30.0%
! AAACTGCAATTTTCCATGAT+TGG - chr7_2:9582834-9582853 Msa1048070:intron 30.0%
TGAACAATGTGTACAAAAAC+AGG + chr7_2:9582928-9582947 None:intergenic 30.0%
CCAACACAAAAACAAAACAT+TGG + chr7_2:9582959-9582978 None:intergenic 30.0%
!!! CCAATGTTTTGTTTTTGTGT+TGG - chr7_2:9582956-9582975 Msa1048070:intron 30.0%
!!! TTCCAATGTTTTGTTTGTGT+TGG - chr7_2:9583038-9583057 Msa1048070:intron 30.0%
ATCCAACACAAACAAAACAT+TGG + chr7_2:9583043-9583062 None:intergenic 30.0%
GTTTGTGTTGGATTATAGTA+TGG - chr7_2:9583050-9583069 Msa1048070:intron 30.0%
CAAGATAGATCAAAACTATC+AGG + chr7_2:9583483-9583502 None:intergenic 30.0%
TCTATCTTGTCATGAAATTG+AGG - chr7_2:9583494-9583513 Msa1048070:intron 30.0%
!! TTTGATGTTGATTCTCTTCT+TGG - chr7_2:9583546-9583565 Msa1048070:intron 30.0%
!! TTGATGTTGATTCTCTTCTT+GGG - chr7_2:9583547-9583566 Msa1048070:intron 30.0%
CAACCTTGTAGAAATAAAGT+AGG - chr7_2:9583610-9583629 Msa1048070:intron 30.0%
!! ACTCAAAGAGTATCAATTCT+CGG + chr7_2:9583697-9583716 None:intergenic 30.0%
TTCACAGAAACATGATTCTT+GGG + chr7_2:9583833-9583852 None:intergenic 30.0%
ATTCACAGAAACATGATTCT+TGG + chr7_2:9583834-9583853 None:intergenic 30.0%
AAGAAGTTATCTACTTCTGT+TGG - chr7_2:9583932-9583951 Msa1048070:five_prime_UTR 30.0%
!! TGGCTTAATAGATGCTGTTT+TGG - chr7_2:9579090-9579109 Msa1048070:three_prime_UTR 35.0%
! GTTCCTTTGTTGTGTTTATG+TGG - chr7_2:9579768-9579787 Msa1048070:intron 35.0%
ATATAATCAAAATGCCACCG+AGG + chr7_2:9579907-9579926 None:intergenic 35.0%
!!! GCTTATGTTTCTGTTGCTTT+TGG - chr7_2:9579989-9580008 Msa1048070:intron 35.0%
GTATGCTATTACTGTATGCA+AGG - chr7_2:9580350-9580369 Msa1048070:CDS 35.0%
CAAAGTAGAGTGTAGTTCAA+CGG - chr7_2:9580452-9580471 Msa1048070:intron 35.0%
! TTGTGCAATTTTGTACTGCA+AGG + chr7_2:9580728-9580747 None:intergenic 35.0%
AAAAACCTAAAGTGAAGGCT+AGG + chr7_2:9580814-9580833 None:intergenic 35.0%
! ATTCTATTTGATTTCCCAGC+AGG - chr7_2:9580922-9580941 Msa1048070:intron 35.0%
! TTCTATTTGATTTCCCAGCA+GGG - chr7_2:9580923-9580942 Msa1048070:intron 35.0%
! AAATTACAGGAAGCGCAAAA+AGG + chr7_2:9581008-9581027 None:intergenic 35.0%
!!! CATTGATTTCCTTTCGCTTT+TGG - chr7_2:9581029-9581048 Msa1048070:intron 35.0%
!! GCTTTTGGTGATTGATCTTT+GGG - chr7_2:9581044-9581063 Msa1048070:intron 35.0%
!! GCTTCATAGACATTTGTTGT+TGG - chr7_2:9581136-9581155 Msa1048070:intron 35.0%
! GTTTATTGTCCACTTGTTGA+TGG - chr7_2:9581230-9581249 Msa1048070:CDS 35.0%
AACCTTATTCCATCAACAAG+TGG + chr7_2:9581242-9581261 None:intergenic 35.0%
GTATGCGTGTTTAATCGTTT+CGG - chr7_2:9581281-9581300 Msa1048070:intron 35.0%
TATTGCAAAGTATGGGATAC+AGG + chr7_2:9581406-9581425 None:intergenic 35.0%
GCATTCGTATTGCAAAGTAT+GGG + chr7_2:9581413-9581432 None:intergenic 35.0%
AGCATTCGTATTGCAAAGTA+TGG + chr7_2:9581414-9581433 None:intergenic 35.0%
ACTTTGCAATACGAATGCTT+AGG - chr7_2:9581415-9581434 Msa1048070:intron 35.0%
ACATCATCAGGTACAAAGAA+AGG - chr7_2:9581565-9581584 Msa1048070:intron 35.0%
AAAGAAAGGTGAACTGTTTG+TGG - chr7_2:9581579-9581598 Msa1048070:intron 35.0%
AAGAAAGGTGAACTGTTTGT+GGG - chr7_2:9581580-9581599 Msa1048070:intron 35.0%
TAGTTTGACAATTCTGTACG+AGG + chr7_2:9581714-9581733 None:intergenic 35.0%
! ACCCTTAAGAGTGTGTTTAT+CGG - chr7_2:9581761-9581780 Msa1048070:intron 35.0%
ACCGATAAACACACTCTTAA+GGG + chr7_2:9581765-9581784 None:intergenic 35.0%
AACCGATAAACACACTCTTA+AGG + chr7_2:9581766-9581785 None:intergenic 35.0%
GAGATAAGAACAGATTGACT+AGG + chr7_2:9581883-9581902 None:intergenic 35.0%
AAAGTACAAGAACTTTGGTC+TGG + chr7_2:9582001-9582020 None:intergenic 35.0%
! GACCAAAGTTCTTGTACTTT+TGG - chr7_2:9582001-9582020 Msa1048070:intron 35.0%
! TGCCAAAAGTACAAGAACTT+TGG + chr7_2:9582006-9582025 None:intergenic 35.0%
! GTTCTGTTTTATGAAACAGG+TGG - chr7_2:9582354-9582373 Msa1048070:intron 35.0%
! GTCAACTTATCTGGTGTTTT+TGG - chr7_2:9582442-9582461 Msa1048070:intron 35.0%
! TTTTGTTAGCTCCCTAAGTT+TGG + chr7_2:9582509-9582528 None:intergenic 35.0%
ATGTGCATTATTGCCAATCA+TGG + chr7_2:9582850-9582869 None:intergenic 35.0%
AAAACAGGTATACTTAAGGG+AGG + chr7_2:9582913-9582932 None:intergenic 35.0%
TGAACAGTGAGTACAAAAAC+AGG + chr7_2:9583012-9583031 None:intergenic 35.0%
TGAACAGTGAGTACAAAAAC+AGG + chr7_2:9583012-9583031 None:intergenic 35.0%
CCAACGCAAAAACAAAACAT+TGG + chr7_2:9583125-9583144 None:intergenic 35.0%
!!! CCAATGTTTTGTTTTTGCGT+TGG - chr7_2:9583122-9583141 Msa1048070:intron 35.0%
!!! TATGATTTGCTTTTGTGTGC+AGG - chr7_2:9583156-9583175 Msa1048070:intron 35.0%
GATCCATTGACAACATTGAA+GGG - chr7_2:9583317-9583336 Msa1048070:intron 35.0%
! GAAATGGTGATGAGTGATTT+AGG + chr7_2:9583395-9583414 None:intergenic 35.0%
! AACCTTAGCACTCTTTTCAA+TGG + chr7_2:9583438-9583457 None:intergenic 35.0%
!! ATTGAAAAGAGTGCTAAGGT+TGG - chr7_2:9583437-9583456 Msa1048070:intron 35.0%
TCTTGTCATGAAATTGAGGT+AGG - chr7_2:9583498-9583517 Msa1048070:intron 35.0%
ATGAAATTGAGGTAGGCTTT+AGG - chr7_2:9583505-9583524 Msa1048070:intron 35.0%
TCTTGGGTAAGAAATGTTCA+AGG - chr7_2:9583563-9583582 Msa1048070:intron 35.0%
GGGCATTTAAGAGTAACATT+TGG + chr7_2:9583646-9583665 None:intergenic 35.0%
! GACTGATACTTTTGATGCAA+TGG - chr7_2:9583767-9583786 Msa1048070:intron 35.0%
TGCTGTATTTGAACTCTTGT+TGG - chr7_2:9583863-9583882 Msa1048070:exon 35.0%
TTAGCAGCCATAGCTTGATT+CGG + chr7_2:9578952-9578971 None:intergenic 40.0%
AATCAAGCTATGGCTGCTAA+GGG - chr7_2:9578952-9578971 Msa1048070:three_prime_UTR 40.0%
AGGTAGAAACAGTGAACTTC+TGG + chr7_2:9579465-9579484 None:intergenic 40.0%
ATTCAACTCACAACTCCAGT+GGG + chr7_2:9579493-9579512 None:intergenic 40.0%
AATTCAACTCACAACTCCAG+TGG + chr7_2:9579494-9579513 None:intergenic 40.0%
AGGAGCTAGTTGAAGAAAAC+AGG - chr7_2:9579623-9579642 Msa1048070:CDS 40.0%
GCAAGATGGAAATGAGATAC+TGG - chr7_2:9580155-9580174 Msa1048070:intron 40.0%
CTATTACTGTATGCAAGGTC+TGG - chr7_2:9580355-9580374 Msa1048070:CDS 40.0%
AGTAGCTAGAGTGAGAACAT+TGG - chr7_2:9580426-9580445 Msa1048070:CDS 40.0%
GTCACTAAAGTCCTTGCTTT+CGG - chr7_2:9580497-9580516 Msa1048070:intron 40.0%
!!! TGCTCTGTTTTAGAGTGATC+TGG - chr7_2:9580643-9580662 Msa1048070:CDS 40.0%
TGCTTGTGTACTCTGCATAT+AGG - chr7_2:9580666-9580685 Msa1048070:CDS 40.0%
TTAGATGCGTTCAGAACAGA+GGG + chr7_2:9580860-9580879 None:intergenic 40.0%
ATTATAAGTGCAACAACGGC+AGG + chr7_2:9580898-9580917 None:intergenic 40.0%
AAACCTAGTGCCAAAATGGT+AGG + chr7_2:9580963-9580982 None:intergenic 40.0%
TGCAAAACCTAGTGCCAAAA+TGG + chr7_2:9580967-9580986 None:intergenic 40.0%
GATCAATCACCAAAAGCGAA+AGG + chr7_2:9581041-9581060 None:intergenic 40.0%
!! CGCTTTTGGTGATTGATCTT+TGG - chr7_2:9581043-9581062 Msa1048070:intron 40.0%
! GTCCACTTGTTGATGGAATA+AGG - chr7_2:9581237-9581256 Msa1048070:CDS 40.0%
AGACACTGTCTTCATTGTAG+CGG - chr7_2:9581326-9581345 Msa1048070:intron 40.0%
GGATACAGGTTAGGAACATA+AGG + chr7_2:9581392-9581411 None:intergenic 40.0%
CAAAGTATGGGATACAGGTT+AGG + chr7_2:9581401-9581420 None:intergenic 40.0%
!! TGTGTCTACTTTGAAGTCAG+CGG + chr7_2:9581641-9581660 None:intergenic 40.0%
GATAAACACACTCTTAAGGG+TGG + chr7_2:9581762-9581781 None:intergenic 40.0%
!!! TGGTCTGGTTTTGCATGTAA+AGG + chr7_2:9581986-9582005 None:intergenic 40.0%
CAGTGATAGTTGTGAAAAGC+TGG + chr7_2:9582124-9582143 None:intergenic 40.0%
CTTATAATAGCCTTCACACC+AGG + chr7_2:9582161-9582180 None:intergenic 40.0%
GATCTCTTCTTCTTACTCCA+TGG - chr7_2:9582317-9582336 Msa1048070:intron 40.0%
CAATACTTGCATGACTATGC+TGG - chr7_2:9582382-9582401 Msa1048070:intron 40.0%
AACCCAGTTGTCAACTTATC+TGG - chr7_2:9582433-9582452 Msa1048070:intron 40.0%
! CACCAGATAAGTTGACAACT+GGG + chr7_2:9582438-9582457 None:intergenic 40.0%
! ACACCAGATAAGTTGACAAC+TGG + chr7_2:9582439-9582458 None:intergenic 40.0%
GGAACTAATGCTCTTGCATT+TGG - chr7_2:9582463-9582482 Msa1048070:intron 40.0%
ACTAATGCTCTTGCATTTGG+TGG - chr7_2:9582466-9582485 Msa1048070:intron 40.0%
TCGCATTAGATAGCATGTTG+CGG + chr7_2:9582763-9582782 None:intergenic 40.0%
TTTGTGTGCAGGAATGAGAA+AGG - chr7_2:9583167-9583186 Msa1048070:intron 40.0%
AGAGAGAACAACTTCACACT+TGG - chr7_2:9583278-9583297 Msa1048070:intron 40.0%
TCAATGGATCCAATGCATGT+TGG + chr7_2:9583307-9583326 None:intergenic 40.0%
GGATCCATTGACAACATTGA+AGG - chr7_2:9583316-9583335 Msa1048070:intron 40.0%
TGCTAAGGTTGGATTGAGTT+TGG - chr7_2:9583448-9583467 Msa1048070:intron 40.0%
TGTTACTCTTAAATGCCCAG+AGG - chr7_2:9583648-9583667 Msa1048070:intron 40.0%
TTTCAAACGCTCACTAACAG+CGG + chr7_2:9583793-9583812 None:intergenic 40.0%
CTGTTAGTGAGCGTTTGAAA+TGG - chr7_2:9583793-9583812 Msa1048070:intron 40.0%
GTTTCCACCGAATCAAGCTA+TGG - chr7_2:9578942-9578961 Msa1048070:three_prime_UTR 45.0%
GAATCAAGCTATGGCTGCTA+AGG - chr7_2:9578951-9578970 Msa1048070:three_prime_UTR 45.0%
GGAAGATTTGTGTGCTTCCT+CGG - chr7_2:9579887-9579906 Msa1048070:intron 45.0%
TATGCTGTTACTGCGAAGTC+TGG - chr7_2:9580322-9580341 Msa1048070:CDS 45.0%
AGAGTGTAGTTCAACGGATC+AGG - chr7_2:9580458-9580477 Msa1048070:intron 45.0%
GAGTGTAGTTCAACGGATCA+GGG - chr7_2:9580459-9580478 Msa1048070:intron 45.0%
ACTTTAGTGACTTTGCCCTG+GGG + chr7_2:9580488-9580507 None:intergenic 45.0%
GACTTTAGTGACTTTGCCCT+GGG + chr7_2:9580489-9580508 None:intergenic 45.0%
TTGTTTGTAGGCCGAAAGCA+AGG + chr7_2:9580511-9580530 None:intergenic 45.0%
!! CACTCTAAAACAGAGCACCA+GGG + chr7_2:9580640-9580659 None:intergenic 45.0%
!! TCACTCTAAAACAGAGCACC+AGG + chr7_2:9580641-9580660 None:intergenic 45.0%
TAGATGCGTTCAGAACAGAG+GGG + chr7_2:9580859-9580878 None:intergenic 45.0%
GTTAGATGCGTTCAGAACAG+AGG + chr7_2:9580861-9580880 None:intergenic 45.0%
AAATGGTAGGCAGGGGAAAA+GGG + chr7_2:9580950-9580969 None:intergenic 45.0%
AAAATGGTAGGCAGGGGAAA+AGG + chr7_2:9580951-9580970 None:intergenic 45.0%
! TTTTCCCCTGCCTACCATTT+TGG - chr7_2:9580950-9580969 Msa1048070:intron 45.0%
TAGTGCCAAAATGGTAGGCA+GGG + chr7_2:9580958-9580977 None:intergenic 45.0%
CTCACTGTGTATTGTGCTAC+AGG - chr7_2:9581537-9581556 Msa1048070:intron 45.0%
CTACAGGCTATCACATCATC+AGG - chr7_2:9581553-9581572 Msa1048070:intron 45.0%
AAAGTTCCTGATCCAGCATC+TGG - chr7_2:9582185-9582204 Msa1048070:intron 45.0%
AAGTTCCTGATCCAGCATCT+GGG - chr7_2:9582186-9582205 Msa1048070:intron 45.0%
TATCTTACCTTCCCAGATGC+TGG + chr7_2:9582200-9582219 None:intergenic 45.0%
CATGACTATGCTGGAGTAAG+CGG - chr7_2:9582391-9582410 Msa1048070:intron 45.0%
!! TGCGAAGTGTTGTCAAACAG+AGG - chr7_2:9582778-9582797 Msa1048070:intron 45.0%
!! ACTGCTGTTGGTGTTGACAT+GGG - chr7_2:9583239-9583258 Msa1048070:intron 45.0%
!! ACTTGGTGTCCAACATGCAT+TGG - chr7_2:9583295-9583314 Msa1048070:intron 45.0%
CGACCCTTCAATGTTGTCAA+TGG + chr7_2:9583323-9583342 None:intergenic 45.0%
! GGTGTCTAGCTCAGTAGAAA+TGG + chr7_2:9583411-9583430 None:intergenic 45.0%
TTCTACTGAGCTAGACACCA+AGG - chr7_2:9583412-9583431 Msa1048070:intron 45.0%
! AGCACTCTTTTCAATGGCCT+TGG + chr7_2:9583432-9583451 None:intergenic 45.0%
!! GGCCATTGAAAAGAGTGCTA+AGG - chr7_2:9583433-9583452 Msa1048070:intron 45.0%
!! AAGAGACTTGTTGAGCCTCT+GGG + chr7_2:9583666-9583685 None:intergenic 45.0%
!! AAAGAGACTTGTTGAGCCTC+TGG + chr7_2:9583667-9583686 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr7_2:9579025-9579044 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr7_2:9579024-9579043 None:intergenic 50.0%
GTTTCTACCTACTCACCCAC+TGG - chr7_2:9579475-9579494 Msa1048070:CDS 50.0%
AGATTTGTGTGCTTCCTCGG+TGG - chr7_2:9579890-9579909 Msa1048070:intron 50.0%
!!! GCTTTTGGTGCTTTGCTGTG+AGG - chr7_2:9580004-9580023 Msa1048070:intron 50.0%
GGACTTTAGTGACTTTGCCC+TGG + chr7_2:9580490-9580509 None:intergenic 50.0%
! GCTAGCCTAGCCTTCACTTT+AGG - chr7_2:9580806-9580825 Msa1048070:intron 50.0%
GAACGCATCTAACTTCCCCT+TGG - chr7_2:9580868-9580887 Msa1048070:intron 50.0%
AGTGCCAAAATGGTAGGCAG+GGG + chr7_2:9580957-9580976 None:intergenic 50.0%
CTAGTGCCAAAATGGTAGGC+AGG + chr7_2:9580959-9580978 None:intergenic 50.0%
!! CTGCCTACCATTTTGGCACT+AGG - chr7_2:9580957-9580976 Msa1048070:intron 50.0%
!! GGAAGCGCAAAAAGGCATCA+GGG + chr7_2:9581000-9581019 None:intergenic 50.0%
!! AGGAAGCGCAAAAAGGCATC+AGG + chr7_2:9581001-9581020 None:intergenic 50.0%
CTGGAGTAAGCGGCAACATT+GGG - chr7_2:9582401-9582420 Msa1048070:intron 50.0%
!! ACCAACAGCAGTGTTGGTCA+CGG + chr7_2:9583231-9583250 None:intergenic 50.0%
GTCAACACCAACAGCAGTGT+TGG + chr7_2:9583237-9583256 None:intergenic 50.0%
!! CACTGCTGTTGGTGTTGACA+TGG - chr7_2:9583238-9583257 Msa1048070:intron 50.0%
TCGTATCACCAACTCAGCCA+AGG - chr7_2:9583340-9583359 Msa1048070:CDS 50.0%
!! GCAGCCATAGCTTGATTCGG+TGG + chr7_2:9578949-9578968 None:intergenic 55.0%
CCGATGTCAGAGTAGAGACC+GGG + chr7_2:9578979-9578998 None:intergenic 55.0%
CCCGGTCTCTACTCTGACAT+CGG - chr7_2:9578976-9578995 Msa1048070:three_prime_UTR 55.0%
GCCGATGTCAGAGTAGAGAC+CGG + chr7_2:9578980-9578999 None:intergenic 55.0%
GACATCGGCAAGAAAGCCAG+AGG - chr7_2:9578991-9579010 Msa1048070:three_prime_UTR 55.0%
AGAGAGGGAGAAGCTACCTC+TGG + chr7_2:9579010-9579029 None:intergenic 55.0%
CACAACTCCAGTGGGTGAGT+AGG + chr7_2:9579485-9579504 None:intergenic 55.0%
TTAGTGACTTTGCCCTGGGG+TGG + chr7_2:9580485-9580504 None:intergenic 55.0%
TTATTGGGTCGGCCCTGCAA+CGG - chr7_2:9580612-9580631 Msa1048070:intron 55.0%
CTTCACACCAGGAGCAGGTT+CGG + chr7_2:9582150-9582169 None:intergenic 55.0%
ATAGCCTTCACACCAGGAGC+AGG + chr7_2:9582155-9582174 None:intergenic 55.0%
TCCTGATCCAGCATCTGGGA+AGG - chr7_2:9582190-9582209 Msa1048070:intron 55.0%
ACCTTCCCAGATGCTGGATC+AGG + chr7_2:9582194-9582213 None:intergenic 55.0%
GCTGGAGTAAGCGGCAACAT+TGG - chr7_2:9582400-9582419 Msa1048070:intron 55.0%
!! CAACAGCAGTGTTGGTCACG+GGG + chr7_2:9583229-9583248 None:intergenic 55.0%
!! CCAACAGCAGTGTTGGTCAC+GGG + chr7_2:9583230-9583249 None:intergenic 55.0%
!! CTGGATAAGGGCACTTGCCT+TGG + chr7_2:9583360-9583379 None:intergenic 55.0%
ACGCCACTCGTGCTGGATAA+GGG + chr7_2:9583372-9583391 None:intergenic 55.0%
! ATTTAGGACGCCACTCGTGC+TGG + chr7_2:9583379-9583398 None:intergenic 55.0%
GCTATGGCTGCTAAGGGTCC+CGG - chr7_2:9578958-9578977 Msa1048070:three_prime_UTR 60.0%
AGCACCAGGGATCCGTTGCA+GGG + chr7_2:9580627-9580646 None:intergenic 60.0%
AACAACGGCAGGCGAGCCAA+GGG + chr7_2:9580887-9580906 None:intergenic 60.0%
AGGGGAAAAGGGACCCTGCT+GGG + chr7_2:9580939-9580958 None:intergenic 60.0%
ACTGTCACCGAACCTGCTCC+TGG - chr7_2:9582140-9582159 Msa1048070:intron 60.0%
CGAACCTGCTCCTGGTGTGA+AGG - chr7_2:9582148-9582167 Msa1048070:intron 60.0%
CCCGTGACCAACACTGCTGT+TGG - chr7_2:9583227-9583246 Msa1048070:intron 60.0%
GGCACTTGCCTTGGCTGAGT+TGG + chr7_2:9583351-9583370 None:intergenic 60.0%
GTGCCCTTATCCAGCACGAG+TGG - chr7_2:9583366-9583385 Msa1048070:CDS 60.0%
GACGCCACTCGTGCTGGATA+AGG + chr7_2:9583373-9583392 None:intergenic 60.0%
AACGGATCAGGGCCACCCCA+GGG - chr7_2:9580470-9580489 Msa1048070:intron 65.0%
GAGCACCAGGGATCCGTTGC+AGG + chr7_2:9580628-9580647 None:intergenic 65.0%
ACAACGGCAGGCGAGCCAAG+GGG + chr7_2:9580886-9580905 None:intergenic 65.0%
CAACAACGGCAGGCGAGCCA+AGG + chr7_2:9580888-9580907 None:intergenic 65.0%
CAGGGGAAAAGGGACCCTGC+TGG + chr7_2:9580940-9580959 None:intergenic 65.0%
CAACGGATCAGGGCCACCCC+AGG - chr7_2:9580469-9580488 Msa1048070:intron 70.0%
TCGGCCCTGCAACGGATCCC+TGG - chr7_2:9580620-9580639 Msa1048070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 9578815 9584013 9578815 ID=Msa1048070;Name=Msa1048070
chr7_2 mRNA 9578815 9584013 9578815 ID=Msa1048070-mRNA-1;Parent=Msa1048070;Name=Msa1048070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=146|1|1|1|1|1|6|529|277
chr7_2 exon 9578815 9579650 9578815 ID=Msa1048070-mRNA-1:exon:2460;Parent=Msa1048070-mRNA-1
chr7_2 exon 9580247 9580455 9580247 ID=Msa1048070-mRNA-1:exon:2459;Parent=Msa1048070-mRNA-1
chr7_2 exon 9580617 9580703 9580617 ID=Msa1048070-mRNA-1:exon:2458;Parent=Msa1048070-mRNA-1
chr7_2 exon 9581159 9581269 9581159 ID=Msa1048070-mRNA-1:exon:2457;Parent=Msa1048070-mRNA-1
chr7_2 exon 9583327 9583394 9583327 ID=Msa1048070-mRNA-1:exon:2456;Parent=Msa1048070-mRNA-1
chr7_2 exon 9583816 9584013 9583816 ID=Msa1048070-mRNA-1:exon:2455;Parent=Msa1048070-mRNA-1
chr7_2 five_prime_UTR 9583868 9584013 9583868 ID=Msa1048070-mRNA-1:five_prime_utr;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9583816 9583867 9583816 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9583327 9583394 9583327 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9581159 9581269 9581159 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9580617 9580703 9580617 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9580247 9580455 9580247 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 CDS 9579344 9579650 9579344 ID=Msa1048070-mRNA-1:cds;Parent=Msa1048070-mRNA-1
chr7_2 three_prime_UTR 9578815 9579343 9578815 ID=Msa1048070-mRNA-1:three_prime_utr;Parent=Msa1048070-mRNA-1
Gene Sequence

>Msa1048070

ATGGCTGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGAGATCTGTTGTTCAAGGACTACAACAGTGACCAGAAGTTCACTGTTTCTACCTACTCACCCACTGGAGTTGCTATCACATCATCAGGTACAAAGAAAGGTGAACTGTTTGTGGGCGATGTTAATACCCAGTTGAAGAACAAAAACTACACCGCTGACTTCAAAGTAGACACAGAGTCTAATCTTTTCACAACTATCACTGTCACCGAACCTGCTCCTGGTGTGAAGGCTATTATAAGCTGCAAAGTTCCTGATCCAGCATCTGGGAAGGTGGAACTACAATACTTGCATGACTATGCTGGAGTAAGCGGCAACATTGGGTTGAAAGCAAACCCAGTTGTCAACTTATCTGGTGTTTTTGGAACTAATGCTCTTGCATTTGGTGGTGATATTTCTTATGATACCAAACTTAGGGAGCTAACAAAATCTAATGTTGGAGTGAGCTTTATCAAAGATGACTTGCTTGGAGCATTGACTCTGAATGAGAAAGGTGATGTGCTGAATGCTTCATACTATCATGTTATTAACCCCGTGACCAACACTGCTGTTGGTGTTGACATGGGTCACAGATTCTCAACTAGAGAGAACAACTTCACACTTGGTGTCCAACATGCATTGGATCCATTGACAACATTGAAGGGTCGTATCACCAACTCAGCCAAGGCAAGTGCCCTTATCCAGCACGAGTGGCGTCCTAAATCACTCATCACCATTTCTACTGAGCTAGACACCAAGGCCATTGAAAAGAGTGCTAAGGTTGGATTGAGTTTGGTTCTCAAACCCTGA
Protein sequence

>Msa1048070

MAAKGPGLYSDIGKKARDLLFKDYNSDQKFTVSTYSPTGVAITSSGTKKGELFVGDVNTQLKNKNYTADFKVDTESNLFTTITVTEPAPGVKAIISCKVPDPASGKVELQYLHDYAGVSGNIGLKANPVVNLSGVFGTNALAFGGDISYDTKLRELTKSNVGVSFIKDDLLGALTLNEKGDVLNASYYHVINPVTNTAVGVDMGHRFSTRENNFTLGVQHALDPLTTLKGRITNSAKASALIQHEWRPKSLITISTELDTKAIEKSAKVGLSLVLKP*