Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289920 | XP_003596140.2 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289920 | A0A396JHI5 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0289920 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0289920 | 0.837012 | 6.679251e-57 | -8.615850e-47 |
| Msa0015710 | Msa0289920 | 0.835717 | 1.426416e-56 | -8.615850e-47 |
| Msa0016120 | Msa0289920 | 0.817811 | 2.717153e-52 | -8.615850e-47 |
| Msa0019600 | Msa0289920 | 0.814665 | 1.372129e-51 | -8.615850e-47 |
| Msa0055450 | Msa0289920 | 0.823554 | 1.301011e-53 | -8.615850e-47 |
| Msa0080990 | Msa0289920 | 0.837982 | 3.768012e-57 | -8.615850e-47 |
| Msa0109880 | Msa0289920 | 0.837105 | 6.326040e-57 | -8.615850e-47 |
| Msa0111750 | Msa0289920 | 0.806967 | 6.359271e-50 | -8.615850e-47 |
| Msa0124130 | Msa0289920 | 0.844601 | 6.834214e-59 | -8.615850e-47 |
| Msa0149140 | Msa0289920 | 0.844092 | 9.363547e-59 | -8.615850e-47 |
| Msa0152500 | Msa0289920 | 0.808890 | 2.479627e-50 | -8.615850e-47 |
| Msa0156250 | Msa0289920 | 0.876275 | 1.589895e-68 | -8.615850e-47 |
| Msa0169910 | Msa0289920 | 0.803281 | 3.757797e-49 | -8.615850e-47 |
| Msa0185490 | Msa0289920 | 0.810627 | 1.049320e-50 | -8.615850e-47 |
| Msa0197100 | Msa0289920 | 0.886800 | 2.493646e-72 | -8.615850e-47 |
| Msa0212150 | Msa0289920 | 0.961378 | 1.242843e-119 | -8.615850e-47 |
| Msa0215640 | Msa0289920 | 0.806655 | 7.402222e-50 | -8.615850e-47 |
| Msa0221290 | Msa0289920 | 0.815153 | 1.069715e-51 | -8.615850e-47 |
| Msa0239030 | Msa0289920 | 0.899520 | 1.827070e-77 | -8.615850e-47 |
| Msa0252770 | Msa0289920 | 0.915375 | 6.346545e-85 | -8.615850e-47 |
| Msa0276740 | Msa0289920 | 0.880073 | 7.413042e-70 | -8.615850e-47 |
| Msa0289920 | Msa0298240 | 0.829529 | 4.891356e-55 | -8.615850e-47 |
| Msa0289920 | Msa0306120 | 0.891490 | 3.788271e-74 | -8.615850e-47 |
| Msa0289920 | Msa0316680 | 0.885055 | 1.130487e-71 | -8.615850e-47 |
| Msa0289920 | Msa0322840 | 0.814318 | 1.637384e-51 | -8.615850e-47 |
| Msa0289920 | Msa0329620 | 0.924656 | 5.264452e-90 | -8.615850e-47 |
| Msa0289920 | Msa0343660 | 0.817306 | 3.531926e-52 | -8.615850e-47 |
| Msa0289920 | Msa0359250 | 0.876907 | 9.611558e-69 | -8.615850e-47 |
| Msa0289920 | Msa0373960 | 0.808433 | 3.104289e-50 | -8.615850e-47 |
| Msa0289920 | Msa0375680 | 0.837454 | 5.149707e-57 | -8.615850e-47 |
| Msa0289920 | Msa0384910 | 0.812645 | 3.820532e-51 | -8.615850e-47 |
| Msa0289920 | Msa0406000 | 0.887843 | 9.992887e-73 | -8.615850e-47 |
| Msa0289920 | Msa0424330 | 0.837596 | 4.735993e-57 | -8.615850e-47 |
| Msa0289920 | Msa0424340 | 0.844388 | 7.796646e-59 | -8.615850e-47 |
| Msa0289920 | Msa0424350 | 0.818356 | 2.046207e-52 | -8.615850e-47 |
| Msa0289920 | Msa0451400 | 0.886596 | 2.980528e-72 | -8.615850e-47 |
| Msa0289920 | Msa0471240 | 0.831175 | 1.937845e-55 | -8.615850e-47 |
| Msa0289920 | Msa0487570 | 0.803143 | 4.012779e-49 | -8.615850e-47 |
| Msa0289920 | Msa0492190 | 0.880513 | 5.160328e-70 | -8.615850e-47 |
| Msa0289920 | Msa0515950 | 0.848110 | 7.551913e-60 | -8.615850e-47 |
| Msa0289920 | Msa0534930 | 0.812408 | 4.304671e-51 | -8.615850e-47 |
| Msa0289920 | Msa0537920 | 0.840208 | 9.984092e-58 | -8.615850e-47 |
| Msa0289920 | Msa0538220 | 0.813410 | 2.596487e-51 | -8.615850e-47 |
| Msa0289920 | Msa0560090 | 0.807985 | 3.868746e-50 | -8.615850e-47 |
| Msa0289920 | Msa0575740 | 0.817502 | 3.189265e-52 | -8.615850e-47 |
| Msa0289920 | Msa0591790 | 0.874766 | 5.225577e-68 | -8.615850e-47 |
| Msa0289920 | Msa0594090 | 0.878751 | 2.178797e-69 | -8.615850e-47 |
| Msa0289920 | Msa0614140 | 0.803314 | 3.698327e-49 | -8.615850e-47 |
| Msa0289920 | Msa0641250 | 0.857422 | 1.650655e-62 | -8.615850e-47 |
| Msa0289920 | Msa0669840 | 0.864575 | 1.101511e-64 | -8.615850e-47 |
| Msa0289920 | Msa0688500 | 0.802241 | 6.158516e-49 | -8.615850e-47 |
| Msa0289920 | Msa0739580 | 0.904666 | 9.671261e-80 | -8.615850e-47 |
| Msa0289920 | Msa0748000 | 0.837150 | 6.157935e-57 | -8.615850e-47 |
| Msa0289920 | Msa0751890 | 0.801164 | 1.024758e-48 | -8.615850e-47 |
| Msa0289920 | Msa0782360 | 0.895695 | 7.504967e-76 | -8.615850e-47 |
| Msa0289920 | Msa0819890 | 0.819610 | 1.061186e-52 | -8.615850e-47 |
| Msa0289920 | Msa0828830 | 0.847808 | 9.146282e-60 | -8.615850e-47 |
| Msa0289920 | Msa0849280 | 0.833578 | 4.921872e-56 | -8.615850e-47 |
| Msa0289920 | Msa0851020 | 0.838182 | 3.348454e-57 | -8.615850e-47 |
| Msa0289920 | Msa0860280 | 0.910275 | 2.246253e-82 | -8.615850e-47 |
| Msa0289920 | Msa0867350 | 0.835548 | 1.573533e-56 | -8.615850e-47 |
| Msa0289920 | Msa0876560 | 0.801036 | 1.088389e-48 | -8.615850e-47 |
| Msa0289920 | Msa0898730 | 0.833781 | 4.377957e-56 | -8.615850e-47 |
| Msa0289920 | Msa0911540 | 0.814600 | 1.418828e-51 | -8.615850e-47 |
| Msa0289920 | Msa0929870 | 0.830144 | 3.464854e-55 | -8.615850e-47 |
| Msa0289920 | Msa0941820 | 0.812822 | 3.494602e-51 | -8.615850e-47 |
| Msa0289920 | Msa0944760 | 0.812485 | 4.139882e-51 | -8.615850e-47 |
| Msa0289920 | Msa0961560 | 0.825223 | 5.269624e-54 | -8.615850e-47 |
| Msa0289920 | Msa0961770 | 0.820277 | 7.469057e-53 | -8.615850e-47 |
| Msa0289920 | Msa0964840 | 0.829575 | 4.767208e-55 | -8.615850e-47 |
| Msa0289920 | Msa0965310 | 0.802341 | 5.874856e-49 | -8.615850e-47 |
| Msa0289920 | Msa0986030 | 0.808247 | 3.401769e-50 | -8.615850e-47 |
| Msa0289920 | Msa0996270 | 0.805725 | 1.162070e-49 | -8.615850e-47 |
| Msa0289920 | Msa0999300 | 0.858744 | 6.674698e-63 | -8.615850e-47 |
| Msa0289920 | Msa0999350 | 0.811412 | 7.090935e-51 | -8.615850e-47 |
| Msa0289920 | Msa0999360 | 0.829068 | 6.330172e-55 | -8.615850e-47 |
| Msa0289920 | Msa0999400 | 0.804270 | 2.341192e-49 | -8.615850e-47 |
| Msa0289920 | Msa0999410 | 0.834219 | 3.402106e-56 | -8.615850e-47 |
| Msa0289920 | Msa1001890 | 0.816792 | 4.607686e-52 | -8.615850e-47 |
| Msa0289920 | Msa1010840 | 0.867334 | 1.477561e-65 | -8.615850e-47 |
| Msa0289920 | Msa1037770 | 0.854384 | 1.276138e-61 | -8.615850e-47 |
| Msa0289920 | Msa1037890 | 0.823515 | 1.328817e-53 | -8.615850e-47 |
| Msa0289920 | Msa1037900 | 0.837725 | 4.387261e-57 | -8.615850e-47 |
| Msa0289920 | Msa1037910 | 0.817195 | 3.739662e-52 | -8.615850e-47 |
| Msa0289920 | Msa1052360 | 0.863981 | 1.688187e-64 | -8.615850e-47 |
| Msa0289920 | Msa1092020 | 0.805029 | 1.625901e-49 | -8.615850e-47 |
| Msa0289920 | Msa1096210 | 0.879641 | 1.055617e-69 | -8.615850e-47 |
| Msa0289920 | Msa1129960 | 0.822070 | 2.884114e-53 | -8.615850e-47 |
| Msa0289920 | Msa1129970 | 0.825189 | 5.367099e-54 | -8.615850e-47 |
| Msa0289920 | Msa1135380 | 0.821512 | 3.881941e-53 | -8.615850e-47 |
| Msa0289920 | Msa1140640 | 0.858699 | 6.886784e-63 | -8.615850e-47 |
| Msa0289920 | Msa1145020 | 0.810006 | 1.428425e-50 | -8.615850e-47 |
| Msa0289920 | Msa1171310 | 0.800750 | 1.245028e-48 | -8.615850e-47 |
| Msa0289920 | Msa1176160 | 0.802333 | 5.896862e-49 | -8.615850e-47 |
| Msa0289920 | Msa1200440 | 0.812205 | 4.766629e-51 | -8.615850e-47 |
| Msa0289920 | Msa1201110 | 0.858581 | 7.469489e-63 | -8.615850e-47 |
| Msa0289920 | Msa1201160 | 0.859619 | 3.648714e-63 | -8.615850e-47 |
| Msa0289920 | Msa1228190 | 0.866037 | 3.821834e-65 | -8.615850e-47 |
| Msa0289920 | Msa1233560 | 0.831300 | 1.805302e-55 | -8.615850e-47 |
| Msa0289920 | Msa1271260 | 0.826092 | 3.279297e-54 | -8.615850e-47 |
| Msa0289920 | Msa1294290 | 0.837515 | 4.966289e-57 | -8.615850e-47 |
| Msa0289920 | Msa1305510 | 0.840524 | 8.257317e-58 | -8.615850e-47 |
| Msa0289920 | Msa1313970 | 0.813173 | 2.926413e-51 | -8.615850e-47 |
| Msa0289920 | Msa1316540 | 0.804407 | 2.192536e-49 | -8.615850e-47 |
| Msa0289920 | Msa1339580 | 0.817538 | 3.131460e-52 | -8.615850e-47 |
| Msa0289920 | Msa1356990 | 0.829370 | 5.348312e-55 | -8.615850e-47 |
| Msa0289920 | Msa1379970 | 0.866925 | 1.995915e-65 | -8.615850e-47 |
| Msa0289920 | Msa1394890 | 0.832417 | 9.564415e-56 | -8.615850e-47 |
| Msa0289920 | Msa1406780 | 0.897770 | 1.018352e-76 | -8.615850e-47 |
| Msa0289920 | Msa1421550 | 0.854847 | 9.370340e-62 | -8.615850e-47 |
| Msa0289920 | Msa1423460 | 0.813086 | 3.057432e-51 | -8.615850e-47 |
| Msa0289920 | Msa1431850 | 0.904397 | 1.280821e-79 | -8.615850e-47 |
| Msa0289920 | Msa1435480 | 0.802548 | 5.324803e-49 | -8.615850e-47 |
| Msa0289920 | Msa1437710 | 0.800311 | 1.529556e-48 | -8.615850e-47 |
| Msa0289920 | Msa1449940 | 0.828402 | 9.169490e-55 | -8.615850e-47 |
| Msa0289920 | Msa1455320 | 0.804750 | 1.859179e-49 | -8.615850e-47 |
| Msa0289920 | Msa1459530 | 0.815647 | 8.306784e-52 | -8.615850e-47 |
| Msa0289920 | Msa1461060 | 0.827375 | 1.620023e-54 | -8.615850e-47 |
| Msa0289920 | Msa1462530 | 0.811170 | 8.004129e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289920 | MtrunA17_Chr2g0311591 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 574 |
| Msa0289920 | MtrunA17_Chr8g0387241 | 77.419 | 62 | 14 | 0 | 156 | 217 | 211 | 272 | 1.75e-24 | 100 |
| Msa0289920 | MtrunA17_Chr5g0397361 | 53.846 | 91 | 39 | 1 | 143 | 233 | 149 | 236 | 1.32e-23 | 96.3 |
| Msa0289920 | MtrunA17_Chr1g0168401 | 45.192 | 104 | 47 | 1 | 124 | 217 | 263 | 366 | 2.07e-22 | 95.5 |
| Msa0289920 | MtrunA17_Chr1g0186171 | 56.164 | 73 | 32 | 0 | 151 | 223 | 297 | 369 | 2.00e-21 | 92.8 |
| Msa0289920 | MtrunA17_Chr2g0327621 | 45.000 | 120 | 54 | 2 | 106 | 214 | 81 | 199 | 3.06e-19 | 84.3 |
| Msa0289920 | MtrunA17_Chr4g0030421 | 59.677 | 62 | 25 | 0 | 155 | 216 | 20 | 81 | 4.24e-18 | 78.6 |
| Msa0289920 | MtrunA17_Chr3g0126721 | 60.000 | 50 | 20 | 0 | 166 | 215 | 226 | 275 | 5.67e-13 | 67.4 |
| Msa0289920 | MtrunA17_Chr1g0147111 | 53.061 | 49 | 23 | 0 | 166 | 214 | 228 | 276 | 9.62e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289920 | AT3G12890.1 | 54.348 | 138 | 59 | 3 | 126 | 263 | 98 | 231 | 1.44e-43 | 149 |
| Msa0289920 | AT5G41380.1 | 75.806 | 62 | 15 | 0 | 156 | 217 | 201 | 262 | 6.02e-25 | 101 |
| Msa0289920 | AT1G63820.1 | 60.241 | 83 | 31 | 1 | 156 | 236 | 178 | 260 | 1.16e-23 | 97.8 |
| Msa0289920 | AT1G04500.4 | 42.857 | 126 | 55 | 3 | 107 | 231 | 237 | 346 | 4.87e-23 | 97.4 |
| Msa0289920 | AT1G04500.1 | 42.857 | 126 | 55 | 3 | 107 | 231 | 237 | 346 | 4.87e-23 | 97.4 |
| Msa0289920 | AT1G04500.3 | 42.857 | 126 | 55 | 3 | 107 | 231 | 228 | 337 | 5.48e-23 | 97.1 |
| Msa0289920 | AT2G33350.2 | 69.355 | 62 | 19 | 0 | 161 | 222 | 301 | 362 | 3.35e-22 | 95.5 |
| Msa0289920 | AT2G33350.4 | 69.355 | 62 | 19 | 0 | 161 | 222 | 290 | 351 | 3.38e-22 | 95.1 |
| Msa0289920 | AT2G33350.1 | 69.355 | 62 | 19 | 0 | 161 | 222 | 302 | 363 | 3.48e-22 | 95.5 |
| Msa0289920 | AT2G33350.5 | 69.355 | 62 | 19 | 0 | 161 | 222 | 310 | 371 | 4.24e-22 | 95.1 |
| Msa0289920 | AT5G59990.1 | 43.119 | 109 | 61 | 1 | 113 | 221 | 107 | 214 | 6.08e-15 | 72.8 |
| Msa0289920 | AT4G27900.1 | 53.061 | 49 | 23 | 0 | 166 | 214 | 210 | 258 | 6.44e-12 | 64.7 |
| Msa0289920 | AT4G27900.2 | 53.061 | 49 | 23 | 0 | 166 | 214 | 210 | 258 | 6.44e-12 | 64.7 |
| Msa0289920 | AT5G53420.2 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0289920 | AT5G53420.5 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0289920 | AT5G53420.4 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0289920 | AT5G53420.1 | 55.102 | 49 | 22 | 0 | 166 | 214 | 214 | 262 | 9.11e-12 | 64.3 |
| Msa0289920 | AT5G24930.1 | 30.460 | 174 | 102 | 6 | 54 | 221 | 186 | 346 | 6.92e-11 | 62.4 |
Find 68 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTTGGATTCCAAATT+TGG | 0.102128 | 2_3:+36416700 | Msa0289920:CDS |
| TCTTGTTGCTCAACCAAATT+TGG | 0.128585 | 2_3:-36416713 | None:intergenic |
| GTCCCTATCTCCTTCATTCA+TGG | 0.225122 | 2_3:+36416496 | Msa0289920:CDS |
| ATTGTGATGCTTCGGCTTCT+TGG | 0.226368 | 2_3:+36416687 | Msa0289920:CDS |
| ATGCCTGTTTATGATAATTA+TGG | 0.229776 | 2_3:+36416638 | Msa0289920:CDS |
| TTTATTATCAGATTGTAAAA+TGG | 0.231726 | 2_3:+36416751 | Msa0289920:CDS |
| TGTAAAATATCTTTGATCTT+TGG | 0.259664 | 2_3:-36418501 | None:intergenic |
| CATAAATTGAAAAGGAAAAT+TGG | 0.264212 | 2_3:-36416474 | None:intergenic |
| CTAATGTTGCAAGAGAAAAT+TGG | 0.300530 | 2_3:+36416906 | Msa0289920:CDS |
| AATAATCAGCCACATATTAT+TGG | 0.303040 | 2_3:+36416818 | Msa0289920:CDS |
| TGCTGATTCATTTCAGTTCC+AGG | 0.315116 | 2_3:+36417816 | Msa0289920:CDS |
| CACATTAATGAAGATTTCTA+TGG | 0.323076 | 2_3:+36417793 | Msa0289920:CDS |
| TCAAGAGGCCATGGCAAGTT+TGG | 0.324460 | 2_3:+36418430 | Msa0289920:CDS |
| TACCTTCCTACCTTTATGTT+TGG | 0.326979 | 2_3:-36417469 | None:intergenic |
| GCAACAAGATTTCGCTGTTC+CGG | 0.338361 | 2_3:+36416727 | Msa0289920:CDS |
| AAGCCATGAATGAAGGAGAT+AGG | 0.372841 | 2_3:-36416499 | None:intergenic |
| TTTGTGTTTGTGTTTGTGTT+TGG | 0.375015 | 2_3:-36416354 | None:intergenic |
| TTATTATCAGATTGTAAAAT+GGG | 0.383948 | 2_3:+36416752 | Msa0289920:CDS |
| GCTCCATAATTATCATAAAC+AGG | 0.394748 | 2_3:-36416641 | None:intergenic |
| GTCACTTGATTGTGATGCTT+CGG | 0.400739 | 2_3:+36416679 | Msa0289920:CDS |
| GAAAATATATAAGACCTTGA+TGG | 0.404923 | 2_3:-36417563 | None:intergenic |
| TGGAGGGATATGTTTGTGTT+TGG | 0.405797 | 2_3:-36416428 | None:intergenic |
| ATGAATATGTATGTATATAT+AGG | 0.418274 | 2_3:-36416382 | None:intergenic |
| AATTAATTGCAGGGGATTCA+AGG | 0.434763 | 2_3:+36417421 | Msa0289920:intron |
| TAATGTTGCAAGAGAAAATT+GGG | 0.435066 | 2_3:+36416907 | Msa0289920:CDS |
| CAAATCATCTGGTGATGAAT+GGG | 0.437073 | 2_3:-36418462 | None:intergenic |
| TGATAGAAGAGTAAGAGTGA+GGG | 0.443578 | 2_3:+36417696 | Msa0289920:CDS |
| ACAAATCATCTGGTGATGAA+TGG | 0.443657 | 2_3:-36418463 | None:intergenic |
| GAAGAGTAAGAGTGAGGGGA+AGG | 0.444124 | 2_3:+36417701 | Msa0289920:CDS |
| AGTTGAAGAGCCAAACATAA+AGG | 0.450736 | 2_3:+36417459 | Msa0289920:CDS |
| AGCTAGTGTGAAAGGTGAAT+AGG | 0.452884 | 2_3:+36418583 | Msa0289920:three_prime_UTR |
| GGAGGGTTTCAGAATTTCAA+TGG | 0.461142 | 2_3:+36416785 | Msa0289920:CDS |
| TAATTAATTCACAAATCATC+TGG | 0.462015 | 2_3:-36418473 | None:intergenic |
| GCAACATTAGGATAAGTTGT+AGG | 0.468600 | 2_3:-36416893 | None:intergenic |
| TGATTACTATATGTAGCTCT+TGG | 0.472384 | 2_3:+36418528 | Msa0289920:three_prime_UTR |
| GATAGGGACATAAATTGAAA+AGG | 0.485582 | 2_3:-36416482 | None:intergenic |
| CTGATAGAAGAGTAAGAGTG+AGG | 0.485744 | 2_3:+36417695 | Msa0289920:CDS |
| TTGGAGCATGGCTTCTCACA+AGG | 0.486813 | 2_3:+36418547 | Msa0289920:three_prime_UTR |
| AGAAGATCAATGTTGTGGTT+TGG | 0.497235 | 2_3:+36416853 | Msa0289920:CDS |
| TTACAATCTGATAATAAAGC+CGG | 0.515082 | 2_3:-36416746 | None:intergenic |
| GAAGGTACTCAGAAGAAGAA+AGG | 0.519719 | 2_3:+36417485 | Msa0289920:CDS |
| GATAGAAGAGTAAGAGTGAG+GGG | 0.529042 | 2_3:+36417697 | Msa0289920:CDS |
| AGCCATGAATGAAGGAGATA+GGG | 0.537940 | 2_3:-36416498 | None:intergenic |
| GTGGAAGAAGCCATGAATGA+AGG | 0.539473 | 2_3:-36416506 | None:intergenic |
| ATAGAAGTGATGAGGGATTG+TGG | 0.543919 | 2_3:-36416525 | None:intergenic |
| GCAGTTAAAGAATGAAGAAG+AGG | 0.550467 | 2_3:+36418400 | Msa0289920:intron |
| AACTCATGACCAATAATATG+TGG | 0.550988 | 2_3:-36416827 | None:intergenic |
| TAGTTTGTATAGAAGTGATG+AGG | 0.558490 | 2_3:-36416533 | None:intergenic |
| TATGGACAATACTATGATGT+GGG | 0.559347 | 2_3:+36416598 | Msa0289920:CDS |
| ATTAAGCTAGCTAGTGTGAA+AGG | 0.561995 | 2_3:+36418575 | Msa0289920:three_prime_UTR |
| AGTTTGTATAGAAGTGATGA+GGG | 0.571794 | 2_3:-36416532 | None:intergenic |
| TCTGATTTCACCACACAACA+AGG | 0.572962 | 2_3:+36416560 | Msa0289920:CDS |
| TATATGTAGCTCTTGGAGCA+TGG | 0.573046 | 2_3:+36418535 | Msa0289920:three_prime_UTR |
| GAAGAGCCAAACATAAAGGT+AGG | 0.576416 | 2_3:+36417463 | Msa0289920:CDS |
| AGCCAAACATAAAGGTAGGA+AGG | 0.578415 | 2_3:+36417467 | Msa0289920:CDS |
| TAAAGAATGAAGAAGAGGAC+TGG | 0.579395 | 2_3:+36418405 | Msa0289920:CDS |
| GGACTGGCTTCAAGAGGCCA+TGG | 0.582269 | 2_3:+36418421 | Msa0289920:CDS |
| AAACTTCAACAAAACCATCA+AGG | 0.586667 | 2_3:+36417549 | Msa0289920:CDS |
| TTATGGACAATACTATGATG+TGG | 0.594335 | 2_3:+36416597 | Msa0289920:CDS |
| AGATGTAAACTCTAATTGCA+TGG | 0.600603 | 2_3:+36418691 | Msa0289920:three_prime_UTR |
| TAAATAGACCAAACTTGCCA+TGG | 0.601398 | 2_3:-36418438 | None:intergenic |
| ACATTAGGATAAGTTGTAGG+TGG | 0.601914 | 2_3:-36416890 | None:intergenic |
| CTGATTTCACCACACAACAA+GGG | 0.621194 | 2_3:+36416561 | Msa0289920:CDS |
| AGAAGAGGACTGGCTTCAAG+AGG | 0.645775 | 2_3:+36418415 | Msa0289920:CDS |
| GACATGTGAAGAAGATCACA+TGG | 0.652465 | 2_3:+36417741 | Msa0289920:CDS |
| TTTGTAGAAGATCAATGTTG+TGG | 0.662640 | 2_3:+36416848 | Msa0289920:CDS |
| TGAAGAAAACCCTTGTTGTG+TGG | 0.693927 | 2_3:-36416570 | None:intergenic |
| ATGGACAATACTATGATGTG+GGG | 0.739532 | 2_3:+36416599 | Msa0289920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTAAAAATTAACTAA+AGG | - | chr2_3:36417128-36417147 | None:intergenic | 10.0% |
| !!! | CATTTTTATTAGATTTTTTT+TGG | + | chr2_3:36417927-36417946 | Msa0289920:intron | 10.0% |
| !!! | TTATATACTTTTTTTTTGTA+GGG | - | chr2_3:36418223-36418242 | None:intergenic | 10.0% |
| !!! | AAGTATATAACTTTTTTTTA+AGG | + | chr2_3:36418233-36418252 | Msa0289920:intron | 10.0% |
| !! | AAAACTTAAAAATTAACTAA+AGG | - | chr2_3:36417128-36417147 | None:intergenic | 10.0% |
| !!! | CATTTTTATTAGATTTTTTT+TGG | + | chr2_3:36417927-36417946 | Msa0289920:intron | 10.0% |
| !!! | TTATATACTTTTTTTTTGTA+GGG | - | chr2_3:36418223-36418242 | None:intergenic | 10.0% |
| !!! | AAGTATATAACTTTTTTTTA+AGG | + | chr2_3:36418233-36418252 | Msa0289920:intron | 10.0% |
| !! | ATGAATATGTATGTATATAT+AGG | - | chr2_3:36416385-36416404 | None:intergenic | 15.0% |
| !! | TTTATTATCAGATTGTAAAA+TGG | + | chr2_3:36416751-36416770 | Msa0289920:CDS | 15.0% |
| !! | TTATTATCAGATTGTAAAAT+GGG | + | chr2_3:36416752-36416771 | Msa0289920:CDS | 15.0% |
| !! | TATACATGTCTATTTATATT+TGG | - | chr2_3:36417366-36417385 | None:intergenic | 15.0% |
| !!! | ATAGTTTAGTACTTTTTTTA+GGG | - | chr2_3:36417975-36417994 | None:intergenic | 15.0% |
| !!! | TATAGTTTAGTACTTTTTTT+AGG | - | chr2_3:36417976-36417995 | None:intergenic | 15.0% |
| !!! | TATATACTTTTTTTTTGTAG+GGG | - | chr2_3:36418222-36418241 | None:intergenic | 15.0% |
| !!! | GTTATATACTTTTTTTTTGT+AGG | - | chr2_3:36418224-36418243 | None:intergenic | 15.0% |
| !!! | AAAATTCATCTCTAATTTTA+TGG | - | chr2_3:36418280-36418299 | None:intergenic | 15.0% |
| !! | ATCAATTTAAGAACATAATT+AGG | - | chr2_3:36418370-36418389 | None:intergenic | 15.0% |
| !! | ATGAATATGTATGTATATAT+AGG | - | chr2_3:36416385-36416404 | None:intergenic | 15.0% |
| !! | TTTATTATCAGATTGTAAAA+TGG | + | chr2_3:36416751-36416770 | Msa0289920:CDS | 15.0% |
| !! | TTATTATCAGATTGTAAAAT+GGG | + | chr2_3:36416752-36416771 | Msa0289920:CDS | 15.0% |
| !! | TATACATGTCTATTTATATT+TGG | - | chr2_3:36417366-36417385 | None:intergenic | 15.0% |
| !!! | ATAGTTTAGTACTTTTTTTA+GGG | - | chr2_3:36417975-36417994 | None:intergenic | 15.0% |
| !!! | TATAGTTTAGTACTTTTTTT+AGG | - | chr2_3:36417976-36417995 | None:intergenic | 15.0% |
| !!! | TATATACTTTTTTTTTGTAG+GGG | - | chr2_3:36418222-36418241 | None:intergenic | 15.0% |
| !!! | GTTATATACTTTTTTTTTGT+AGG | - | chr2_3:36418224-36418243 | None:intergenic | 15.0% |
| !!! | AAAATTCATCTCTAATTTTA+TGG | - | chr2_3:36418280-36418299 | None:intergenic | 15.0% |
| !! | ATCAATTTAAGAACATAATT+AGG | - | chr2_3:36418370-36418389 | None:intergenic | 15.0% |
| !! | CATAAATTGAAAAGGAAAAT+TGG | - | chr2_3:36416477-36416496 | None:intergenic | 20.0% |
| !!! | TCAAAGTGTTATTTATATCA+TGG | + | chr2_3:36416974-36416993 | Msa0289920:intron | 20.0% |
| !!! | GAATTTTATTTCAAAGCTAT+GGG | - | chr2_3:36417265-36417284 | None:intergenic | 20.0% |
| !!! | TGAATTTTATTTCAAAGCTA+TGG | - | chr2_3:36417266-36417285 | None:intergenic | 20.0% |
| !!! | TTAACTTGAAATTAATTGCA+GGG | + | chr2_3:36417412-36417431 | Msa0289920:intron | 20.0% |
| !!! | TTTTTGGTGAAAATGTTTAA+CGG | - | chr2_3:36418019-36418038 | None:intergenic | 20.0% |
| !! | TTTAATTCATATACACTAAG+TGG | + | chr2_3:36418064-36418083 | Msa0289920:intron | 20.0% |
| !!! | AACTAAACAGTTTTTATAGT+CGG | - | chr2_3:36418098-36418117 | None:intergenic | 20.0% |
| !! | TAATTAATTCACAAATCATC+TGG | - | chr2_3:36418476-36418495 | None:intergenic | 20.0% |
| !! | TGTAAAATATCTTTGATCTT+TGG | - | chr2_3:36418504-36418523 | None:intergenic | 20.0% |
| !! | CATAAATTGAAAAGGAAAAT+TGG | - | chr2_3:36416477-36416496 | None:intergenic | 20.0% |
| !!! | TCAAAGTGTTATTTATATCA+TGG | + | chr2_3:36416974-36416993 | Msa0289920:intron | 20.0% |
| !!! | GAATTTTATTTCAAAGCTAT+GGG | - | chr2_3:36417265-36417284 | None:intergenic | 20.0% |
| !!! | TGAATTTTATTTCAAAGCTA+TGG | - | chr2_3:36417266-36417285 | None:intergenic | 20.0% |
| !!! | TTAACTTGAAATTAATTGCA+GGG | + | chr2_3:36417412-36417431 | Msa0289920:intron | 20.0% |
| !!! | TTTTTGGTGAAAATGTTTAA+CGG | - | chr2_3:36418019-36418038 | None:intergenic | 20.0% |
| !! | TTTAATTCATATACACTAAG+TGG | + | chr2_3:36418064-36418083 | Msa0289920:intron | 20.0% |
| !!! | AACTAAACAGTTTTTATAGT+CGG | - | chr2_3:36418098-36418117 | None:intergenic | 20.0% |
| !! | TAATTAATTCACAAATCATC+TGG | - | chr2_3:36418476-36418495 | None:intergenic | 20.0% |
| !! | TGTAAAATATCTTTGATCTT+TGG | - | chr2_3:36418504-36418523 | None:intergenic | 20.0% |
| !!! | TATGTTTGTGTTTGGTTTTT+TGG | - | chr2_3:36416423-36416442 | None:intergenic | 25.0% |
| ! | ATGCCTGTTTATGATAATTA+TGG | + | chr2_3:36416638-36416657 | Msa0289920:CDS | 25.0% |
| ! | TTACAATCTGATAATAAAGC+CGG | - | chr2_3:36416749-36416768 | None:intergenic | 25.0% |
| !! | GATTGTAAAATGGGATTTTA+TGG | + | chr2_3:36416761-36416780 | Msa0289920:CDS | 25.0% |
| ! | AATAATCAGCCACATATTAT+TGG | + | chr2_3:36416818-36416837 | Msa0289920:CDS | 25.0% |
| ! | TAATGTTGCAAGAGAAAATT+GGG | + | chr2_3:36416907-36416926 | Msa0289920:CDS | 25.0% |
| ! | CTATACAAGAATGAAACATT+AGG | - | chr2_3:36416948-36416967 | None:intergenic | 25.0% |
| !! | GTTAACTTGAAATTAATTGC+AGG | + | chr2_3:36417411-36417430 | Msa0289920:intron | 25.0% |
| ! | TAACTTGAAATTAATTGCAG+GGG | + | chr2_3:36417413-36417432 | Msa0289920:intron | 25.0% |
| ! | GAAAATATATAAGACCTTGA+TGG | - | chr2_3:36417566-36417585 | None:intergenic | 25.0% |
| !! | GTCTTATATATTTTCTCACA+TGG | + | chr2_3:36417571-36417590 | Msa0289920:intron | 25.0% |
| !! | TTATATATTTTCTCACATGG+TGG | + | chr2_3:36417574-36417593 | Msa0289920:intron | 25.0% |
| ! | CATACTGTAAAATTATGTGA+AGG | - | chr2_3:36417657-36417676 | None:intergenic | 25.0% |
| ! | CACATTAATGAAGATTTCTA+TGG | + | chr2_3:36417793-36417812 | Msa0289920:CDS | 25.0% |
| !! | TTTTGGTGAAAATGTTTAAC+GGG | - | chr2_3:36418018-36418037 | None:intergenic | 25.0% |
| !! | GTCTACATTTTGTGTTTAAT+TGG | + | chr2_3:36418325-36418344 | Msa0289920:intron | 25.0% |
| !!! | TATGTTTGTGTTTGGTTTTT+TGG | - | chr2_3:36416423-36416442 | None:intergenic | 25.0% |
| ! | ATGCCTGTTTATGATAATTA+TGG | + | chr2_3:36416638-36416657 | Msa0289920:CDS | 25.0% |
| ! | TTACAATCTGATAATAAAGC+CGG | - | chr2_3:36416749-36416768 | None:intergenic | 25.0% |
| !! | GATTGTAAAATGGGATTTTA+TGG | + | chr2_3:36416761-36416780 | Msa0289920:CDS | 25.0% |
| ! | AATAATCAGCCACATATTAT+TGG | + | chr2_3:36416818-36416837 | Msa0289920:CDS | 25.0% |
| ! | TAATGTTGCAAGAGAAAATT+GGG | + | chr2_3:36416907-36416926 | Msa0289920:CDS | 25.0% |
| ! | CTATACAAGAATGAAACATT+AGG | - | chr2_3:36416948-36416967 | None:intergenic | 25.0% |
| !! | GTTAACTTGAAATTAATTGC+AGG | + | chr2_3:36417411-36417430 | Msa0289920:intron | 25.0% |
| ! | TAACTTGAAATTAATTGCAG+GGG | + | chr2_3:36417413-36417432 | Msa0289920:intron | 25.0% |
| ! | GAAAATATATAAGACCTTGA+TGG | - | chr2_3:36417566-36417585 | None:intergenic | 25.0% |
| !! | GTCTTATATATTTTCTCACA+TGG | + | chr2_3:36417571-36417590 | Msa0289920:intron | 25.0% |
| !! | TTATATATTTTCTCACATGG+TGG | + | chr2_3:36417574-36417593 | Msa0289920:intron | 25.0% |
| ! | CATACTGTAAAATTATGTGA+AGG | - | chr2_3:36417657-36417676 | None:intergenic | 25.0% |
| ! | CACATTAATGAAGATTTCTA+TGG | + | chr2_3:36417793-36417812 | Msa0289920:CDS | 25.0% |
| !! | TTTTGGTGAAAATGTTTAAC+GGG | - | chr2_3:36418018-36418037 | None:intergenic | 25.0% |
| !! | GTCTACATTTTGTGTTTAAT+TGG | + | chr2_3:36418325-36418344 | Msa0289920:intron | 25.0% |
| !!! | TTTGTGTTTGGTTTTTGGTT+TGG | - | chr2_3:36416345-36416364 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGTGTTTGGTTTT+TGG | - | chr2_3:36416350-36416369 | None:intergenic | 30.0% |
| TTTGTGTTTGTGTTTGTGTT+TGG | - | chr2_3:36416357-36416376 | None:intergenic | 30.0% | |
| !!! | TTGTGTTTGGTTTTTTGGTT+TGG | - | chr2_3:36416418-36416437 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGTGAATGTGGA+GGG | - | chr2_3:36416447-36416466 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTGTGAATG+TGG | - | chr2_3:36416451-36416470 | None:intergenic | 30.0% |
| GATAGGGACATAAATTGAAA+AGG | - | chr2_3:36416485-36416504 | None:intergenic | 30.0% | |
| AGTTTGTATAGAAGTGATGA+GGG | - | chr2_3:36416535-36416554 | None:intergenic | 30.0% | |
| ! | TAGTTTGTATAGAAGTGATG+AGG | - | chr2_3:36416536-36416555 | None:intergenic | 30.0% |
| ! | AGGGTTTTCTTCAACAATTA+TGG | + | chr2_3:36416580-36416599 | Msa0289920:CDS | 30.0% |
| TTATGGACAATACTATGATG+TGG | + | chr2_3:36416597-36416616 | Msa0289920:CDS | 30.0% | |
| TATGGACAATACTATGATGT+GGG | + | chr2_3:36416598-36416617 | Msa0289920:CDS | 30.0% | |
| GCTCCATAATTATCATAAAC+AGG | - | chr2_3:36416644-36416663 | None:intergenic | 30.0% | |
| ! | TGTAAAATGGGATTTTATGG+TGG | + | chr2_3:36416764-36416783 | Msa0289920:CDS | 30.0% |
| AACTCATGACCAATAATATG+TGG | - | chr2_3:36416830-36416849 | None:intergenic | 30.0% | |
| TTTGTAGAAGATCAATGTTG+TGG | + | chr2_3:36416848-36416867 | Msa0289920:CDS | 30.0% | |
| ! | CAATTTTCTCTTGCAACATT+AGG | - | chr2_3:36416908-36416927 | None:intergenic | 30.0% |
| CTAATGTTGCAAGAGAAAAT+TGG | + | chr2_3:36416906-36416925 | Msa0289920:CDS | 30.0% | |
| ! | GTTTTTCTTGATCAAGTACA+TGG | + | chr2_3:36416996-36417015 | Msa0289920:intron | 30.0% |
| GTGTTGCGACAATAATATAA+AGG | - | chr2_3:36417065-36417084 | None:intergenic | 30.0% | |
| ! | TTATTGTCGCAACACAATTT+TGG | + | chr2_3:36417070-36417089 | Msa0289920:intron | 30.0% |
| ! | TGCTTTTCTTAAGATGTCAA+GGG | - | chr2_3:36417202-36417221 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTAAGATGTCA+AGG | - | chr2_3:36417203-36417222 | None:intergenic | 30.0% |
| AAACTTCAACAAAACCATCA+AGG | + | chr2_3:36417549-36417568 | Msa0289920:CDS | 30.0% | |
| !!! | ATGATTCTCAAGCTTTTTTG+TGG | - | chr2_3:36417767-36417786 | None:intergenic | 30.0% |
| CTTAAATCATGAAAGTTACC+TGG | - | chr2_3:36417837-36417856 | None:intergenic | 30.0% | |
| CAGGTAACTTTCATGATTTA+AGG | + | chr2_3:36417835-36417854 | Msa0289920:intron | 30.0% | |
| GGGAATTATAGTTAAGTACT+TGG | - | chr2_3:36417955-36417974 | None:intergenic | 30.0% | |
| ! | TAAACAGTTTTTATAGTCGG+AGG | - | chr2_3:36418095-36418114 | None:intergenic | 30.0% |
| ! | AAAAGTGCACATATGAATGA+TGG | + | chr2_3:36418165-36418184 | Msa0289920:intron | 30.0% |
| ! | TCATCTCTAATTTTATGGAG+TGG | - | chr2_3:36418275-36418294 | None:intergenic | 30.0% |
| TGATTACTATATGTAGCTCT+TGG | + | chr2_3:36418528-36418547 | Msa0289920:three_prime_UTR | 30.0% | |
| AGATGTAAACTCTAATTGCA+TGG | + | chr2_3:36418691-36418710 | Msa0289920:three_prime_UTR | 30.0% | |
| !!! | TTTGTGTTTGGTTTTTGGTT+TGG | - | chr2_3:36416345-36416364 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGTGTTTGGTTTT+TGG | - | chr2_3:36416350-36416369 | None:intergenic | 30.0% |
| TTTGTGTTTGTGTTTGTGTT+TGG | - | chr2_3:36416357-36416376 | None:intergenic | 30.0% | |
| !!! | TTGTGTTTGGTTTTTTGGTT+TGG | - | chr2_3:36416418-36416437 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGTGAATGTGGA+GGG | - | chr2_3:36416447-36416466 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTGTGAATG+TGG | - | chr2_3:36416451-36416470 | None:intergenic | 30.0% |
| GATAGGGACATAAATTGAAA+AGG | - | chr2_3:36416485-36416504 | None:intergenic | 30.0% | |
| AGTTTGTATAGAAGTGATGA+GGG | - | chr2_3:36416535-36416554 | None:intergenic | 30.0% | |
| ! | TAGTTTGTATAGAAGTGATG+AGG | - | chr2_3:36416536-36416555 | None:intergenic | 30.0% |
| ! | AGGGTTTTCTTCAACAATTA+TGG | + | chr2_3:36416580-36416599 | Msa0289920:CDS | 30.0% |
| TTATGGACAATACTATGATG+TGG | + | chr2_3:36416597-36416616 | Msa0289920:CDS | 30.0% | |
| TATGGACAATACTATGATGT+GGG | + | chr2_3:36416598-36416617 | Msa0289920:CDS | 30.0% | |
| GCTCCATAATTATCATAAAC+AGG | - | chr2_3:36416644-36416663 | None:intergenic | 30.0% | |
| ! | TGTAAAATGGGATTTTATGG+TGG | + | chr2_3:36416764-36416783 | Msa0289920:CDS | 30.0% |
| AACTCATGACCAATAATATG+TGG | - | chr2_3:36416830-36416849 | None:intergenic | 30.0% | |
| TTTGTAGAAGATCAATGTTG+TGG | + | chr2_3:36416848-36416867 | Msa0289920:CDS | 30.0% | |
| ! | CAATTTTCTCTTGCAACATT+AGG | - | chr2_3:36416908-36416927 | None:intergenic | 30.0% |
| CTAATGTTGCAAGAGAAAAT+TGG | + | chr2_3:36416906-36416925 | Msa0289920:CDS | 30.0% | |
| ! | GTTTTTCTTGATCAAGTACA+TGG | + | chr2_3:36416996-36417015 | Msa0289920:intron | 30.0% |
| GTGTTGCGACAATAATATAA+AGG | - | chr2_3:36417065-36417084 | None:intergenic | 30.0% | |
| ! | TTATTGTCGCAACACAATTT+TGG | + | chr2_3:36417070-36417089 | Msa0289920:intron | 30.0% |
| ! | TGCTTTTCTTAAGATGTCAA+GGG | - | chr2_3:36417202-36417221 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTAAGATGTCA+AGG | - | chr2_3:36417203-36417222 | None:intergenic | 30.0% |
| AAACTTCAACAAAACCATCA+AGG | + | chr2_3:36417549-36417568 | Msa0289920:CDS | 30.0% | |
| !!! | ATGATTCTCAAGCTTTTTTG+TGG | - | chr2_3:36417767-36417786 | None:intergenic | 30.0% |
| CTTAAATCATGAAAGTTACC+TGG | - | chr2_3:36417837-36417856 | None:intergenic | 30.0% | |
| CAGGTAACTTTCATGATTTA+AGG | + | chr2_3:36417835-36417854 | Msa0289920:intron | 30.0% | |
| GGGAATTATAGTTAAGTACT+TGG | - | chr2_3:36417955-36417974 | None:intergenic | 30.0% | |
| ! | TAAACAGTTTTTATAGTCGG+AGG | - | chr2_3:36418095-36418114 | None:intergenic | 30.0% |
| ! | AAAAGTGCACATATGAATGA+TGG | + | chr2_3:36418165-36418184 | Msa0289920:intron | 30.0% |
| ! | TCATCTCTAATTTTATGGAG+TGG | - | chr2_3:36418275-36418294 | None:intergenic | 30.0% |
| TGATTACTATATGTAGCTCT+TGG | + | chr2_3:36418528-36418547 | Msa0289920:three_prime_UTR | 30.0% | |
| AGATGTAAACTCTAATTGCA+TGG | + | chr2_3:36418691-36418710 | Msa0289920:three_prime_UTR | 30.0% | |
| !!! | GTTTTTTGTTGTGAATGTGG+AGG | - | chr2_3:36416448-36416467 | None:intergenic | 35.0% |
| ATGGACAATACTATGATGTG+GGG | + | chr2_3:36416599-36416618 | Msa0289920:CDS | 35.0% | |
| TCTTGTTGCTCAACCAAATT+TGG | - | chr2_3:36416716-36416735 | None:intergenic | 35.0% | |
| ! | AAAATGGGATTTTATGGTGG+AGG | + | chr2_3:36416767-36416786 | Msa0289920:CDS | 35.0% |
| !! | AAATGGGATTTTATGGTGGA+GGG | + | chr2_3:36416768-36416787 | Msa0289920:CDS | 35.0% |
| AGAAGATCAATGTTGTGGTT+TGG | + | chr2_3:36416853-36416872 | Msa0289920:CDS | 35.0% | |
| ACATTAGGATAAGTTGTAGG+TGG | - | chr2_3:36416893-36416912 | None:intergenic | 35.0% | |
| GCAACATTAGGATAAGTTGT+AGG | - | chr2_3:36416896-36416915 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTGAATTGCCAT+TGG | + | chr2_3:36417013-36417032 | Msa0289920:intron | 35.0% |
| AATTAATTGCAGGGGATTCA+AGG | + | chr2_3:36417421-36417440 | Msa0289920:intron | 35.0% | |
| AGTTGAAGAGCCAAACATAA+AGG | + | chr2_3:36417459-36417478 | Msa0289920:CDS | 35.0% | |
| TACCTTCCTACCTTTATGTT+TGG | - | chr2_3:36417472-36417491 | None:intergenic | 35.0% | |
| TGATAGAAGAGTAAGAGTGA+GGG | + | chr2_3:36417696-36417715 | Msa0289920:CDS | 35.0% | |
| GCAGTTAAAGAATGAAGAAG+AGG | + | chr2_3:36418400-36418419 | Msa0289920:intron | 35.0% | |
| TAAAGAATGAAGAAGAGGAC+TGG | + | chr2_3:36418405-36418424 | Msa0289920:CDS | 35.0% | |
| TAAATAGACCAAACTTGCCA+TGG | - | chr2_3:36418441-36418460 | None:intergenic | 35.0% | |
| ! | CAAATCATCTGGTGATGAAT+GGG | - | chr2_3:36418465-36418484 | None:intergenic | 35.0% |
| ! | ACAAATCATCTGGTGATGAA+TGG | - | chr2_3:36418466-36418485 | None:intergenic | 35.0% |
| ATTAAGCTAGCTAGTGTGAA+AGG | + | chr2_3:36418575-36418594 | Msa0289920:three_prime_UTR | 35.0% | |
| !!! | GTTTTTTGTTGTGAATGTGG+AGG | - | chr2_3:36416448-36416467 | None:intergenic | 35.0% |
| ATGGACAATACTATGATGTG+GGG | + | chr2_3:36416599-36416618 | Msa0289920:CDS | 35.0% | |
| TCTTGTTGCTCAACCAAATT+TGG | - | chr2_3:36416716-36416735 | None:intergenic | 35.0% | |
| ! | AAAATGGGATTTTATGGTGG+AGG | + | chr2_3:36416767-36416786 | Msa0289920:CDS | 35.0% |
| !! | AAATGGGATTTTATGGTGGA+GGG | + | chr2_3:36416768-36416787 | Msa0289920:CDS | 35.0% |
| AGAAGATCAATGTTGTGGTT+TGG | + | chr2_3:36416853-36416872 | Msa0289920:CDS | 35.0% | |
| ACATTAGGATAAGTTGTAGG+TGG | - | chr2_3:36416893-36416912 | None:intergenic | 35.0% | |
| GCAACATTAGGATAAGTTGT+AGG | - | chr2_3:36416896-36416915 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTGAATTGCCAT+TGG | + | chr2_3:36417013-36417032 | Msa0289920:intron | 35.0% |
| AATTAATTGCAGGGGATTCA+AGG | + | chr2_3:36417421-36417440 | Msa0289920:intron | 35.0% | |
| AGTTGAAGAGCCAAACATAA+AGG | + | chr2_3:36417459-36417478 | Msa0289920:CDS | 35.0% | |
| TACCTTCCTACCTTTATGTT+TGG | - | chr2_3:36417472-36417491 | None:intergenic | 35.0% | |
| TGATAGAAGAGTAAGAGTGA+GGG | + | chr2_3:36417696-36417715 | Msa0289920:CDS | 35.0% | |
| GCAGTTAAAGAATGAAGAAG+AGG | + | chr2_3:36418400-36418419 | Msa0289920:intron | 35.0% | |
| TAAAGAATGAAGAAGAGGAC+TGG | + | chr2_3:36418405-36418424 | Msa0289920:CDS | 35.0% | |
| TAAATAGACCAAACTTGCCA+TGG | - | chr2_3:36418441-36418460 | None:intergenic | 35.0% | |
| ! | CAAATCATCTGGTGATGAAT+GGG | - | chr2_3:36418465-36418484 | None:intergenic | 35.0% |
| ! | ACAAATCATCTGGTGATGAA+TGG | - | chr2_3:36418466-36418485 | None:intergenic | 35.0% |
| ATTAAGCTAGCTAGTGTGAA+AGG | + | chr2_3:36418575-36418594 | Msa0289920:three_prime_UTR | 35.0% | |
| TGGAGGGATATGTTTGTGTT+TGG | - | chr2_3:36416431-36416450 | None:intergenic | 40.0% | |
| AGCCATGAATGAAGGAGATA+GGG | - | chr2_3:36416501-36416520 | None:intergenic | 40.0% | |
| AAGCCATGAATGAAGGAGAT+AGG | - | chr2_3:36416502-36416521 | None:intergenic | 40.0% | |
| ATAGAAGTGATGAGGGATTG+TGG | - | chr2_3:36416528-36416547 | None:intergenic | 40.0% | |
| TCTGATTTCACCACACAACA+AGG | + | chr2_3:36416560-36416579 | Msa0289920:CDS | 40.0% | |
| CTGATTTCACCACACAACAA+GGG | + | chr2_3:36416561-36416580 | Msa0289920:CDS | 40.0% | |
| ! | TGAAGAAAACCCTTGTTGTG+TGG | - | chr2_3:36416573-36416592 | None:intergenic | 40.0% |
| GTCACTTGATTGTGATGCTT+CGG | + | chr2_3:36416679-36416698 | Msa0289920:CDS | 40.0% | |
| GGCTTCTTGGATTCCAAATT+TGG | + | chr2_3:36416700-36416719 | Msa0289920:CDS | 40.0% | |
| GGAGGGTTTCAGAATTTCAA+TGG | + | chr2_3:36416785-36416804 | Msa0289920:CDS | 40.0% | |
| AATTGCAAAAGCGACTCCAA+TGG | - | chr2_3:36417032-36417051 | None:intergenic | 40.0% | |
| GAAGAGCCAAACATAAAGGT+AGG | + | chr2_3:36417463-36417482 | Msa0289920:CDS | 40.0% | |
| AGCCAAACATAAAGGTAGGA+AGG | + | chr2_3:36417467-36417486 | Msa0289920:CDS | 40.0% | |
| !! | GAAGGTACTCAGAAGAAGAA+AGG | + | chr2_3:36417485-36417504 | Msa0289920:CDS | 40.0% |
| CTGATAGAAGAGTAAGAGTG+AGG | + | chr2_3:36417695-36417714 | Msa0289920:CDS | 40.0% | |
| GATAGAAGAGTAAGAGTGAG+GGG | + | chr2_3:36417697-36417716 | Msa0289920:CDS | 40.0% | |
| GACATGTGAAGAAGATCACA+TGG | + | chr2_3:36417741-36417760 | Msa0289920:CDS | 40.0% | |
| !! | TGCTGATTCATTTCAGTTCC+AGG | + | chr2_3:36417816-36417835 | Msa0289920:CDS | 40.0% |
| TATATGTAGCTCTTGGAGCA+TGG | + | chr2_3:36418535-36418554 | Msa0289920:three_prime_UTR | 40.0% | |
| AGCTAGTGTGAAAGGTGAAT+AGG | + | chr2_3:36418583-36418602 | Msa0289920:three_prime_UTR | 40.0% | |
| TGGAGGGATATGTTTGTGTT+TGG | - | chr2_3:36416431-36416450 | None:intergenic | 40.0% | |
| AGCCATGAATGAAGGAGATA+GGG | - | chr2_3:36416501-36416520 | None:intergenic | 40.0% | |
| AAGCCATGAATGAAGGAGAT+AGG | - | chr2_3:36416502-36416521 | None:intergenic | 40.0% | |
| ATAGAAGTGATGAGGGATTG+TGG | - | chr2_3:36416528-36416547 | None:intergenic | 40.0% | |
| TCTGATTTCACCACACAACA+AGG | + | chr2_3:36416560-36416579 | Msa0289920:CDS | 40.0% | |
| CTGATTTCACCACACAACAA+GGG | + | chr2_3:36416561-36416580 | Msa0289920:CDS | 40.0% | |
| ! | TGAAGAAAACCCTTGTTGTG+TGG | - | chr2_3:36416573-36416592 | None:intergenic | 40.0% |
| GTCACTTGATTGTGATGCTT+CGG | + | chr2_3:36416679-36416698 | Msa0289920:CDS | 40.0% | |
| GGCTTCTTGGATTCCAAATT+TGG | + | chr2_3:36416700-36416719 | Msa0289920:CDS | 40.0% | |
| GGAGGGTTTCAGAATTTCAA+TGG | + | chr2_3:36416785-36416804 | Msa0289920:CDS | 40.0% | |
| AATTGCAAAAGCGACTCCAA+TGG | - | chr2_3:36417032-36417051 | None:intergenic | 40.0% | |
| GAAGAGCCAAACATAAAGGT+AGG | + | chr2_3:36417463-36417482 | Msa0289920:CDS | 40.0% | |
| AGCCAAACATAAAGGTAGGA+AGG | + | chr2_3:36417467-36417486 | Msa0289920:CDS | 40.0% | |
| !! | GAAGGTACTCAGAAGAAGAA+AGG | + | chr2_3:36417485-36417504 | Msa0289920:CDS | 40.0% |
| CTGATAGAAGAGTAAGAGTG+AGG | + | chr2_3:36417695-36417714 | Msa0289920:CDS | 40.0% | |
| GATAGAAGAGTAAGAGTGAG+GGG | + | chr2_3:36417697-36417716 | Msa0289920:CDS | 40.0% | |
| GACATGTGAAGAAGATCACA+TGG | + | chr2_3:36417741-36417760 | Msa0289920:CDS | 40.0% | |
| !! | TGCTGATTCATTTCAGTTCC+AGG | + | chr2_3:36417816-36417835 | Msa0289920:CDS | 40.0% |
| TATATGTAGCTCTTGGAGCA+TGG | + | chr2_3:36418535-36418554 | Msa0289920:three_prime_UTR | 40.0% | |
| AGCTAGTGTGAAAGGTGAAT+AGG | + | chr2_3:36418583-36418602 | Msa0289920:three_prime_UTR | 40.0% | |
| GTCCCTATCTCCTTCATTCA+TGG | + | chr2_3:36416496-36416515 | Msa0289920:CDS | 45.0% | |
| GTGGAAGAAGCCATGAATGA+AGG | - | chr2_3:36416509-36416528 | None:intergenic | 45.0% | |
| ATTGTGATGCTTCGGCTTCT+TGG | + | chr2_3:36416687-36416706 | Msa0289920:CDS | 45.0% | |
| GCAACAAGATTTCGCTGTTC+CGG | + | chr2_3:36416727-36416746 | Msa0289920:CDS | 45.0% | |
| GTCCCTATCTCCTTCATTCA+TGG | + | chr2_3:36416496-36416515 | Msa0289920:CDS | 45.0% | |
| GTGGAAGAAGCCATGAATGA+AGG | - | chr2_3:36416509-36416528 | None:intergenic | 45.0% | |
| ATTGTGATGCTTCGGCTTCT+TGG | + | chr2_3:36416687-36416706 | Msa0289920:CDS | 45.0% | |
| GCAACAAGATTTCGCTGTTC+CGG | + | chr2_3:36416727-36416746 | Msa0289920:CDS | 45.0% | |
| !!! | TTTTATTTTTAAAAATTCAT+AGG | + | chr2_3:36417175-36417194 | Msa0289920:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+AGG | + | chr2_3:36417294-36417313 | Msa0289920:intron | 5.0% |
| !!! | TTTAATATTAATTTGATTTT+TGG | - | chr2_3:36418035-36418054 | None:intergenic | 5.0% |
| !!! | CAAATTAATATTAAATTTTA+AGG | + | chr2_3:36418040-36418059 | Msa0289920:intron | 5.0% |
| !!! | TTTTATTTTTAAAAATTCAT+AGG | + | chr2_3:36417175-36417194 | Msa0289920:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+AGG | + | chr2_3:36417294-36417313 | Msa0289920:intron | 5.0% |
| !!! | TTTAATATTAATTTGATTTT+TGG | - | chr2_3:36418035-36418054 | None:intergenic | 5.0% |
| !!! | CAAATTAATATTAAATTTTA+AGG | + | chr2_3:36418040-36418059 | Msa0289920:intron | 5.0% |
| GAAGAGTAAGAGTGAGGGGA+AGG | + | chr2_3:36417701-36417720 | Msa0289920:CDS | 50.0% | |
| !! | AGAAGAGGACTGGCTTCAAG+AGG | + | chr2_3:36418415-36418434 | Msa0289920:CDS | 50.0% |
| TCAAGAGGCCATGGCAAGTT+TGG | + | chr2_3:36418430-36418449 | Msa0289920:CDS | 50.0% | |
| TTGGAGCATGGCTTCTCACA+AGG | + | chr2_3:36418547-36418566 | Msa0289920:three_prime_UTR | 50.0% | |
| GAAGAGTAAGAGTGAGGGGA+AGG | + | chr2_3:36417701-36417720 | Msa0289920:CDS | 50.0% | |
| !! | AGAAGAGGACTGGCTTCAAG+AGG | + | chr2_3:36418415-36418434 | Msa0289920:CDS | 50.0% |
| TCAAGAGGCCATGGCAAGTT+TGG | + | chr2_3:36418430-36418449 | Msa0289920:CDS | 50.0% | |
| TTGGAGCATGGCTTCTCACA+AGG | + | chr2_3:36418547-36418566 | Msa0289920:three_prime_UTR | 50.0% | |
| !! | GGACTGGCTTCAAGAGGCCA+TGG | + | chr2_3:36418421-36418440 | Msa0289920:CDS | 60.0% |
| !! | GGACTGGCTTCAAGAGGCCA+TGG | + | chr2_3:36418421-36418440 | Msa0289920:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 36416332 | 36418727 | 36416332 | ID=Msa0289920;Name=Msa0289920 |
| chr2_3 | mRNA | 36416332 | 36418727 | 36416332 | ID=Msa0289920-mRNA-1;Parent=Msa0289920;Name=Msa0289920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162|1|1|1|1|1|4|240|273 |
| chr2_3 | exon | 36416332 | 36416928 | 36416332 | ID=Msa0289920-mRNA-1:exon:11944;Parent=Msa0289920-mRNA-1 |
| chr2_3 | exon | 36417433 | 36417570 | 36417433 | ID=Msa0289920-mRNA-1:exon:11945;Parent=Msa0289920-mRNA-1 |
| chr2_3 | exon | 36417673 | 36417837 | 36417673 | ID=Msa0289920-mRNA-1:exon:11946;Parent=Msa0289920-mRNA-1 |
| chr2_3 | exon | 36418404 | 36418727 | 36418404 | ID=Msa0289920-mRNA-1:exon:11947;Parent=Msa0289920-mRNA-1 |
| chr2_3 | five_prime_UTR | 36416332 | 36416493 | 36416332 | ID=Msa0289920-mRNA-1:five_prime_utr;Parent=Msa0289920-mRNA-1 |
| chr2_3 | CDS | 36416494 | 36416928 | 36416494 | ID=Msa0289920-mRNA-1:cds;Parent=Msa0289920-mRNA-1 |
| chr2_3 | CDS | 36417433 | 36417570 | 36417433 | ID=Msa0289920-mRNA-1:cds;Parent=Msa0289920-mRNA-1 |
| chr2_3 | CDS | 36417673 | 36417837 | 36417673 | ID=Msa0289920-mRNA-1:cds;Parent=Msa0289920-mRNA-1 |
| chr2_3 | CDS | 36418404 | 36418487 | 36418404 | ID=Msa0289920-mRNA-1:cds;Parent=Msa0289920-mRNA-1 |
| chr2_3 | three_prime_UTR | 36418488 | 36418727 | 36418488 | ID=Msa0289920-mRNA-1:three_prime_utr;Parent=Msa0289920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
