Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212150 | XP_003596140.2 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212150 | A0A396JHI5 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0212150 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0212150 | 0.816728 | 4.761888e-52 | -8.615850e-47 |
| Msa0006980 | Msa0212150 | 0.830695 | 2.540876e-55 | -8.615850e-47 |
| Msa0015710 | Msa0212150 | 0.839858 | 1.232309e-57 | -8.615850e-47 |
| Msa0016120 | Msa0212150 | 0.839351 | 1.668690e-57 | -8.615850e-47 |
| Msa0019600 | Msa0212150 | 0.828479 | 8.787824e-55 | -8.615850e-47 |
| Msa0024550 | Msa0212150 | 0.804392 | 2.208379e-49 | -8.615850e-47 |
| Msa0050040 | Msa0212150 | 0.820132 | 8.062708e-53 | -8.615850e-47 |
| Msa0055450 | Msa0212150 | 0.821530 | 3.844938e-53 | -8.615850e-47 |
| Msa0080990 | Msa0212150 | 0.844457 | 7.472839e-59 | -8.615850e-47 |
| Msa0102990 | Msa0212150 | 0.819982 | 8.726533e-53 | -8.615850e-47 |
| Msa0109880 | Msa0212150 | 0.845212 | 4.674812e-59 | -8.615850e-47 |
| Msa0111750 | Msa0212150 | 0.815141 | 1.076274e-51 | -8.615850e-47 |
| Msa0124130 | Msa0212150 | 0.847945 | 8.386029e-60 | -8.615850e-47 |
| Msa0125170 | Msa0212150 | 0.801719 | 7.886267e-49 | -8.615850e-47 |
| Msa0141120 | Msa0212150 | 0.810872 | 9.286418e-51 | -8.615850e-47 |
| Msa0141600 | Msa0212150 | 0.817942 | 2.538049e-52 | -8.615850e-47 |
| Msa0147600 | Msa0212150 | 0.802425 | 5.643851e-49 | -8.615850e-47 |
| Msa0149140 | Msa0212150 | 0.842010 | 3.356939e-58 | -8.615850e-47 |
| Msa0152500 | Msa0212150 | 0.817199 | 3.732946e-52 | -8.615850e-47 |
| Msa0156250 | Msa0212150 | 0.877838 | 4.556173e-69 | -8.615850e-47 |
| Msa0169910 | Msa0212150 | 0.811252 | 7.682711e-51 | -8.615850e-47 |
| Msa0185490 | Msa0212150 | 0.833901 | 4.087248e-56 | -8.615850e-47 |
| Msa0197100 | Msa0212150 | 0.883084 | 6.053206e-71 | -8.615850e-47 |
| Msa0203030 | Msa0212150 | 0.805240 | 1.468715e-49 | -8.615850e-47 |
| Msa0212150 | Msa0215640 | 0.816816 | 4.550688e-52 | -8.615850e-47 |
| Msa0212150 | Msa0219190 | 0.815362 | 9.612306e-52 | -8.615850e-47 |
| Msa0212150 | Msa0221290 | 0.849218 | 3.724668e-60 | -8.615850e-47 |
| Msa0212150 | Msa0232920 | 0.803383 | 3.578941e-49 | -8.615850e-47 |
| Msa0212150 | Msa0239030 | 0.896033 | 5.437145e-76 | -8.615850e-47 |
| Msa0212150 | Msa0252630 | 0.809619 | 1.730578e-50 | -8.615850e-47 |
| Msa0212150 | Msa0252770 | 0.962440 | 7.031086e-121 | -8.615850e-47 |
| Msa0212150 | Msa0276740 | 0.884253 | 2.245279e-71 | -8.615850e-47 |
| Msa0212150 | Msa0289920 | 0.961378 | 1.242843e-119 | -8.615850e-47 |
| Msa0212150 | Msa0298240 | 0.848263 | 6.853494e-60 | -8.615850e-47 |
| Msa0212150 | Msa0306120 | 0.905203 | 5.501568e-80 | -8.615850e-47 |
| Msa0212150 | Msa0316680 | 0.887039 | 2.025019e-72 | -8.615850e-47 |
| Msa0212150 | Msa0322830 | 0.809960 | 1.461300e-50 | -8.615850e-47 |
| Msa0212150 | Msa0322840 | 0.840020 | 1.117666e-57 | -8.615850e-47 |
| Msa0212150 | Msa0329620 | 0.959515 | 1.581505e-117 | -8.615850e-47 |
| Msa0212150 | Msa0331540 | 0.801992 | 6.930971e-49 | -8.615850e-47 |
| Msa0212150 | Msa0340480 | 0.821251 | 4.458503e-53 | -8.615850e-47 |
| Msa0212150 | Msa0343660 | 0.817055 | 4.021125e-52 | -8.615850e-47 |
| Msa0212150 | Msa0359250 | 0.883410 | 4.594155e-71 | -8.615850e-47 |
| Msa0212150 | Msa0362780 | 0.804787 | 1.826673e-49 | -8.615850e-47 |
| Msa0212150 | Msa0373960 | 0.815666 | 8.223930e-52 | -8.615850e-47 |
| Msa0212150 | Msa0375680 | 0.843216 | 1.606352e-58 | -8.615850e-47 |
| Msa0212150 | Msa0384910 | 0.827973 | 1.163616e-54 | -8.615850e-47 |
| Msa0212150 | Msa0392420 | 0.805076 | 1.589791e-49 | -8.615850e-47 |
| Msa0212150 | Msa0406000 | 0.894424 | 2.498669e-75 | -8.615850e-47 |
| Msa0212150 | Msa0423100 | 0.809075 | 2.263607e-50 | -8.615850e-47 |
| Msa0212150 | Msa0424330 | 0.845685 | 3.480647e-59 | -8.615850e-47 |
| Msa0212150 | Msa0424340 | 0.847954 | 8.338603e-60 | -8.615850e-47 |
| Msa0212150 | Msa0424350 | 0.834201 | 3.437564e-56 | -8.615850e-47 |
| Msa0212150 | Msa0451400 | 0.894129 | 3.295317e-75 | -8.615850e-47 |
| Msa0212150 | Msa0471240 | 0.843054 | 1.773627e-58 | -8.615850e-47 |
| Msa0212150 | Msa0487570 | 0.811145 | 8.105162e-51 | -8.615850e-47 |
| Msa0212150 | Msa0492190 | 0.885524 | 7.551697e-72 | -8.615850e-47 |
| Msa0212150 | Msa0515950 | 0.849013 | 4.244799e-60 | -8.615850e-47 |
| Msa0212150 | Msa0534930 | 0.828251 | 9.973418e-55 | -8.615850e-47 |
| Msa0212150 | Msa0535040 | 0.810170 | 1.316737e-50 | -8.615850e-47 |
| Msa0212150 | Msa0537920 | 0.831404 | 1.701628e-55 | -8.615850e-47 |
| Msa0212150 | Msa0538220 | 0.829814 | 4.170127e-55 | -8.615850e-47 |
| Msa0212150 | Msa0560090 | 0.802668 | 5.030136e-49 | -8.615850e-47 |
| Msa0212150 | Msa0575740 | 0.838224 | 3.265540e-57 | -8.615850e-47 |
| Msa0212150 | Msa0591790 | 0.876168 | 1.730126e-68 | -8.615850e-47 |
| Msa0212150 | Msa0594090 | 0.882873 | 7.230819e-71 | -8.615850e-47 |
| Msa0212150 | Msa0641250 | 0.860757 | 1.653143e-63 | -8.615850e-47 |
| Msa0212150 | Msa0641360 | 0.816515 | 5.314205e-52 | -8.615850e-47 |
| Msa0212150 | Msa0669840 | 0.872667 | 2.667096e-67 | -8.615850e-47 |
| Msa0212150 | Msa0688500 | 0.813854 | 2.073008e-51 | -8.615850e-47 |
| Msa0212150 | Msa0709450 | 0.805263 | 1.452621e-49 | -8.615850e-47 |
| Msa0212150 | Msa0725860 | 0.803147 | 4.005062e-49 | -8.615850e-47 |
| Msa0212150 | Msa0737190 | 0.802886 | 4.535120e-49 | -8.615850e-47 |
| Msa0212150 | Msa0739580 | 0.910625 | 1.518917e-82 | -8.615850e-47 |
| Msa0212150 | Msa0748000 | 0.843402 | 1.432335e-58 | -8.615850e-47 |
| Msa0212150 | Msa0770290 | 0.820397 | 7.010273e-53 | -8.615850e-47 |
| Msa0212150 | Msa0782360 | 0.900534 | 6.652195e-78 | -8.615850e-47 |
| Msa0212150 | Msa0819890 | 0.834818 | 2.405239e-56 | -8.615850e-47 |
| Msa0212150 | Msa0823400 | 0.816030 | 6.823691e-52 | -8.615850e-47 |
| Msa0212150 | Msa0828830 | 0.855772 | 5.041443e-62 | -8.615850e-47 |
| Msa0212150 | Msa0849280 | 0.842764 | 2.118087e-58 | -8.615850e-47 |
| Msa0212150 | Msa0851020 | 0.846688 | 1.856170e-59 | -8.615850e-47 |
| Msa0212150 | Msa0860160 | 0.816171 | 6.346452e-52 | -8.615850e-47 |
| Msa0212150 | Msa0860280 | 0.914580 | 1.622982e-84 | -8.615850e-47 |
| Msa0212150 | Msa0867350 | 0.849498 | 3.111848e-60 | -8.615850e-47 |
| Msa0212150 | Msa0880650 | 0.818674 | 1.732875e-52 | -8.615850e-47 |
| Msa0212150 | Msa0895790 | 0.817617 | 3.004912e-52 | -8.615850e-47 |
| Msa0212150 | Msa0898730 | 0.847757 | 9.446396e-60 | -8.615850e-47 |
| Msa0212150 | Msa0899950 | 0.800391 | 1.473456e-48 | -8.615850e-47 |
| Msa0212150 | Msa0909140 | 0.814117 | 1.813641e-51 | -8.615850e-47 |
| Msa0212150 | Msa0911540 | 0.836383 | 9.661336e-57 | -8.615850e-47 |
| Msa0212150 | Msa0922750 | 0.805982 | 1.026203e-49 | -8.615850e-47 |
| Msa0212150 | Msa0929870 | 0.840334 | 9.257976e-58 | -8.615850e-47 |
| Msa0212150 | Msa0936410 | 0.800527 | 1.382548e-48 | -8.615850e-47 |
| Msa0212150 | Msa0941820 | 0.829968 | 3.825082e-55 | -8.615850e-47 |
| Msa0212150 | Msa0944760 | 0.828782 | 7.423444e-55 | -8.615850e-47 |
| Msa0212150 | Msa0944880 | 0.818853 | 1.578458e-52 | -8.615850e-47 |
| Msa0212150 | Msa0961560 | 0.831413 | 1.693244e-55 | -8.615850e-47 |
| Msa0212150 | Msa0961770 | 0.840211 | 9.966014e-58 | -8.615850e-47 |
| Msa0212150 | Msa0964840 | 0.832459 | 9.342746e-56 | -8.615850e-47 |
| Msa0212150 | Msa0965310 | 0.819147 | 1.353192e-52 | -8.615850e-47 |
| Msa0212150 | Msa0986030 | 0.836689 | 8.076918e-57 | -8.615850e-47 |
| Msa0212150 | Msa0996270 | 0.820378 | 7.080386e-53 | -8.615850e-47 |
| Msa0212150 | Msa0999300 | 0.865335 | 6.362564e-65 | -8.615850e-47 |
| Msa0212150 | Msa0999320 | 0.806152 | 9.448210e-50 | -8.615850e-47 |
| Msa0212150 | Msa0999350 | 0.825041 | 5.817510e-54 | -8.615850e-47 |
| Msa0212150 | Msa0999360 | 0.850839 | 1.309598e-60 | -8.615850e-47 |
| Msa0212150 | Msa0999400 | 0.817558 | 3.099046e-52 | -8.615850e-47 |
| Msa0212150 | Msa0999410 | 0.846879 | 1.645277e-59 | -8.615850e-47 |
| Msa0212150 | Msa1001870 | 0.806574 | 7.700381e-50 | -8.615850e-47 |
| Msa0212150 | Msa1001890 | 0.834300 | 3.245388e-56 | -8.615850e-47 |
| Msa0212150 | Msa1010840 | 0.874699 | 5.507538e-68 | -8.615850e-47 |
| Msa0212150 | Msa1033570 | 0.803155 | 3.988720e-49 | -8.615850e-47 |
| Msa0212150 | Msa1034680 | 0.815912 | 7.248500e-52 | -8.615850e-47 |
| Msa0212150 | Msa1037770 | 0.844142 | 9.076514e-59 | -8.615850e-47 |
| Msa0212150 | Msa1037890 | 0.825106 | 5.615316e-54 | -8.615850e-47 |
| Msa0212150 | Msa1037900 | 0.839029 | 2.022438e-57 | -8.615850e-47 |
| Msa0212150 | Msa1037910 | 0.830966 | 2.180367e-55 | -8.615850e-47 |
| Msa0212150 | Msa1041530 | 0.808688 | 2.738264e-50 | -8.615850e-47 |
| Msa0212150 | Msa1052360 | 0.871722 | 5.503339e-67 | -8.615850e-47 |
| Msa0212150 | Msa1055060 | 0.815724 | 7.984628e-52 | -8.615850e-47 |
| Msa0212150 | Msa1070420 | 0.805032 | 1.623817e-49 | -8.615850e-47 |
| Msa0212150 | Msa1081570 | 0.823181 | 1.590718e-53 | -8.615850e-47 |
| Msa0212150 | Msa1084520 | 0.816671 | 4.902989e-52 | -8.615850e-47 |
| Msa0212150 | Msa1092020 | 0.821834 | 3.270134e-53 | -8.615850e-47 |
| Msa0212150 | Msa1096210 | 0.886398 | 3.541728e-72 | -8.615850e-47 |
| Msa0212150 | Msa1114990 | 0.808566 | 2.907797e-50 | -8.615850e-47 |
| Msa0212150 | Msa1123880 | 0.811067 | 8.427898e-51 | -8.615850e-47 |
| Msa0212150 | Msa1125810 | 0.805161 | 1.525648e-49 | -8.615850e-47 |
| Msa0212150 | Msa1127140 | 0.829744 | 4.336451e-55 | -8.615850e-47 |
| Msa0212150 | Msa1129960 | 0.832710 | 8.093821e-56 | -8.615850e-47 |
| Msa0212150 | Msa1129970 | 0.833491 | 5.174330e-56 | -8.615850e-47 |
| Msa0212150 | Msa1130010 | 0.815118 | 1.089087e-51 | -8.615850e-47 |
| Msa0212150 | Msa1135380 | 0.835834 | 1.331956e-56 | -8.615850e-47 |
| Msa0212150 | Msa1140640 | 0.859663 | 3.540698e-63 | -8.615850e-47 |
| Msa0212150 | Msa1145020 | 0.839869 | 1.223688e-57 | -8.615850e-47 |
| Msa0212150 | Msa1166400 | 0.818720 | 1.691659e-52 | -8.615850e-47 |
| Msa0212150 | Msa1169990 | 0.808999 | 2.349535e-50 | -8.615850e-47 |
| Msa0212150 | Msa1171310 | 0.817122 | 3.883213e-52 | -8.615850e-47 |
| Msa0212150 | Msa1176160 | 0.822900 | 1.849847e-53 | -8.615850e-47 |
| Msa0212150 | Msa1179280 | 0.823646 | 1.238479e-53 | -8.615850e-47 |
| Msa0212150 | Msa1200440 | 0.826879 | 2.129021e-54 | -8.615850e-47 |
| Msa0212150 | Msa1201110 | 0.862716 | 4.161987e-64 | -8.615850e-47 |
| Msa0212150 | Msa1201160 | 0.860083 | 2.644100e-63 | -8.615850e-47 |
| Msa0212150 | Msa1228190 | 0.876869 | 9.903768e-69 | -8.615850e-47 |
| Msa0212150 | Msa1233560 | 0.861471 | 1.002186e-63 | -8.615850e-47 |
| Msa0212150 | Msa1248040 | 0.804099 | 2.541852e-49 | -8.615850e-47 |
| Msa0212150 | Msa1260610 | 0.801013 | 1.100074e-48 | -8.615850e-47 |
| Msa0212150 | Msa1271260 | 0.847697 | 9.814799e-60 | -8.615850e-47 |
| Msa0212150 | Msa1275820 | 0.802398 | 5.716685e-49 | -8.615850e-47 |
| Msa0212150 | Msa1277400 | 0.800631 | 1.316497e-48 | -8.615850e-47 |
| Msa0212150 | Msa1294290 | 0.838276 | 3.165533e-57 | -8.615850e-47 |
| Msa0212150 | Msa1305510 | 0.856082 | 4.092189e-62 | -8.615850e-47 |
| Msa0212150 | Msa1307190 | 0.825167 | 5.432585e-54 | -8.615850e-47 |
| Msa0212150 | Msa1313970 | 0.840966 | 6.324010e-58 | -8.615850e-47 |
| Msa0212150 | Msa1316540 | 0.816122 | 6.508446e-52 | -8.615850e-47 |
| Msa0212150 | Msa1339580 | 0.819869 | 9.259519e-53 | -8.615850e-47 |
| Msa0212150 | Msa1356990 | 0.829728 | 4.375003e-55 | -8.615850e-47 |
| Msa0212150 | Msa1379970 | 0.893820 | 4.402360e-75 | -8.615850e-47 |
| Msa0212150 | Msa1394890 | 0.854757 | 9.951259e-62 | -8.615850e-47 |
| Msa0212150 | Msa1406780 | 0.904902 | 7.546398e-80 | -8.615850e-47 |
| Msa0212150 | Msa1420060 | 0.818683 | 1.724546e-52 | -8.615850e-47 |
| Msa0212150 | Msa1421550 | 0.865005 | 8.079872e-65 | -8.615850e-47 |
| Msa0212150 | Msa1423460 | 0.829685 | 4.483792e-55 | -8.615850e-47 |
| Msa0212150 | Msa1431850 | 0.910487 | 1.773410e-82 | -8.615850e-47 |
| Msa0212150 | Msa1435480 | 0.823621 | 1.255048e-53 | -8.615850e-47 |
| Msa0212150 | Msa1437710 | 0.806708 | 7.212794e-50 | -8.615850e-47 |
| Msa0212150 | Msa1449940 | 0.842735 | 2.156239e-58 | -8.615850e-47 |
| Msa0212150 | Msa1455320 | 0.817436 | 3.301372e-52 | -8.615850e-47 |
| Msa0212150 | Msa1458910 | 0.800362 | 1.493252e-48 | -8.615850e-47 |
| Msa0212150 | Msa1459530 | 0.841682 | 4.097989e-58 | -8.615850e-47 |
| Msa0212150 | Msa1461060 | 0.850988 | 1.189092e-60 | -8.615850e-47 |
| Msa0212150 | Msa1462530 | 0.828552 | 8.439583e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212150 | MtrunA17_Chr2g0311591 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 573 |
| Msa0212150 | MtrunA17_Chr8g0387241 | 77.419 | 62 | 14 | 0 | 156 | 217 | 211 | 272 | 1.52e-24 | 100 |
| Msa0212150 | MtrunA17_Chr5g0397361 | 53.846 | 91 | 39 | 1 | 143 | 233 | 149 | 236 | 1.15e-23 | 96.7 |
| Msa0212150 | MtrunA17_Chr1g0168401 | 45.192 | 104 | 47 | 1 | 124 | 217 | 263 | 366 | 1.91e-22 | 95.9 |
| Msa0212150 | MtrunA17_Chr1g0186171 | 56.164 | 73 | 32 | 0 | 151 | 223 | 297 | 369 | 1.92e-21 | 92.8 |
| Msa0212150 | MtrunA17_Chr2g0327621 | 74.074 | 54 | 14 | 0 | 161 | 214 | 146 | 199 | 3.13e-19 | 84.3 |
| Msa0212150 | MtrunA17_Chr4g0030421 | 59.677 | 62 | 25 | 0 | 155 | 216 | 20 | 81 | 4.20e-18 | 78.6 |
| Msa0212150 | MtrunA17_Chr3g0126721 | 60.000 | 50 | 20 | 0 | 166 | 215 | 226 | 275 | 5.61e-13 | 67.4 |
| Msa0212150 | MtrunA17_Chr1g0147111 | 53.061 | 49 | 23 | 0 | 166 | 214 | 228 | 276 | 9.26e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212150 | AT3G12890.1 | 38.672 | 256 | 129 | 10 | 10 | 263 | 2 | 231 | 1.40e-43 | 149 |
| Msa0212150 | AT5G41380.1 | 75.806 | 62 | 15 | 0 | 156 | 217 | 201 | 262 | 5.60e-25 | 101 |
| Msa0212150 | AT1G63820.1 | 60.241 | 83 | 31 | 1 | 156 | 236 | 178 | 260 | 1.07e-23 | 97.8 |
| Msa0212150 | AT1G04500.4 | 42.857 | 126 | 55 | 3 | 107 | 231 | 237 | 346 | 5.17e-23 | 97.4 |
| Msa0212150 | AT1G04500.1 | 42.857 | 126 | 55 | 3 | 107 | 231 | 237 | 346 | 5.17e-23 | 97.4 |
| Msa0212150 | AT1G04500.3 | 42.857 | 126 | 55 | 3 | 107 | 231 | 228 | 337 | 5.82e-23 | 97.1 |
| Msa0212150 | AT2G33350.2 | 69.355 | 62 | 19 | 0 | 161 | 222 | 301 | 362 | 3.35e-22 | 95.5 |
| Msa0212150 | AT2G33350.4 | 69.355 | 62 | 19 | 0 | 161 | 222 | 290 | 351 | 3.41e-22 | 95.1 |
| Msa0212150 | AT2G33350.1 | 69.355 | 62 | 19 | 0 | 161 | 222 | 302 | 363 | 3.54e-22 | 95.5 |
| Msa0212150 | AT2G33350.5 | 69.355 | 62 | 19 | 0 | 161 | 222 | 310 | 371 | 4.41e-22 | 95.1 |
| Msa0212150 | AT5G59990.1 | 43.119 | 109 | 61 | 1 | 113 | 221 | 107 | 214 | 5.96e-15 | 72.8 |
| Msa0212150 | AT4G27900.1 | 42.254 | 71 | 35 | 1 | 144 | 214 | 194 | 258 | 6.07e-12 | 64.7 |
| Msa0212150 | AT4G27900.2 | 42.254 | 71 | 35 | 1 | 144 | 214 | 194 | 258 | 6.07e-12 | 64.7 |
| Msa0212150 | AT5G53420.2 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0212150 | AT5G53420.5 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0212150 | AT5G53420.4 | 55.102 | 49 | 22 | 0 | 166 | 214 | 135 | 183 | 7.29e-12 | 63.2 |
| Msa0212150 | AT5G53420.1 | 55.102 | 49 | 22 | 0 | 166 | 214 | 214 | 262 | 8.93e-12 | 64.3 |
| Msa0212150 | AT5G24930.1 | 30.460 | 174 | 102 | 6 | 54 | 221 | 186 | 346 | 6.98e-11 | 62.4 |
Find 67 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTTGGATTCCAAATT+TGG | 0.102128 | 2_1:-53992527 | Msa0212150:CDS |
| TCTTGTTGCTCAACCAAATT+TGG | 0.128585 | 2_1:+53992514 | None:intergenic |
| GTCCCTATCTCCTTCATTCA+TGG | 0.225122 | 2_1:-53992731 | Msa0212150:CDS |
| ATTGTGATGCTTCGGCTTCT+TGG | 0.226368 | 2_1:-53992540 | Msa0212150:CDS |
| ATGCCTGTTTATGATAATTA+TGG | 0.229776 | 2_1:-53992589 | Msa0212150:CDS |
| TTTATTATCAGATTGTAAAA+TGG | 0.231726 | 2_1:-53992476 | Msa0212150:CDS |
| CATAAATTGAAAAGGAAAAT+TGG | 0.264212 | 2_1:+53992753 | None:intergenic |
| CTAATGTTGCAAGAGAAAAT+TGG | 0.300530 | 2_1:-53992321 | Msa0212150:CDS |
| AATAATCAGCCACATATTAT+TGG | 0.303040 | 2_1:-53992409 | Msa0212150:CDS |
| TGCTGATTCATTTCAGTTCC+AGG | 0.315116 | 2_1:-53991408 | Msa0212150:intron |
| CACATTAATGAAGATTTCTA+TGG | 0.323076 | 2_1:-53991431 | Msa0212150:CDS |
| TCAAGAGGCCATGGCAAGTT+TGG | 0.324460 | 2_1:-53990794 | Msa0212150:CDS |
| TACCTTCCTACCTTTATGTT+TGG | 0.326979 | 2_1:+53991757 | None:intergenic |
| GCAACAAGATTTCGCTGTTC+CGG | 0.338361 | 2_1:-53992500 | Msa0212150:CDS |
| AAGCCATGAATGAAGGAGAT+AGG | 0.372841 | 2_1:+53992728 | None:intergenic |
| TTATTATCAGATTGTAAAAT+GGG | 0.383948 | 2_1:-53992475 | Msa0212150:CDS |
| GCTCCATAATTATCATAAAC+AGG | 0.394748 | 2_1:+53992586 | None:intergenic |
| GTCACTTGATTGTGATGCTT+CGG | 0.400739 | 2_1:-53992548 | Msa0212150:CDS |
| ATGAATATATATGTATATAT+AGG | 0.404841 | 2_1:+53992905 | None:intergenic |
| GAAAATATATAAGACCTTGA+TGG | 0.404923 | 2_1:+53991663 | None:intergenic |
| TGGAGGGATATGTTTGTGTT+TGG | 0.417783 | 2_1:+53992799 | None:intergenic |
| AATTAATTGCAGGGGATTCA+AGG | 0.434763 | 2_1:-53991805 | Msa0212150:intron |
| TAATGTTGCAAGAGAAAATT+GGG | 0.435066 | 2_1:-53992320 | Msa0212150:intron |
| CATATCATCTGGTGATGAAT+GGG | 0.440400 | 2_1:+53990762 | None:intergenic |
| TGATAGAAGAGTAAGAGTGA+GGG | 0.443578 | 2_1:-53991528 | Msa0212150:CDS |
| GAAGAGTAAGAGTGAGGGGA+AGG | 0.444124 | 2_1:-53991523 | Msa0212150:CDS |
| ACATATCATCTGGTGATGAA+TGG | 0.448395 | 2_1:+53990761 | None:intergenic |
| AGTTGAAGAGCCAAACATAA+AGG | 0.450736 | 2_1:-53991767 | Msa0212150:CDS |
| AGCTAGTGTGAAAGGTGAAT+AGG | 0.452884 | 2_1:-53990641 | Msa0212150:three_prime_UTR |
| GGAGGGTTTCAGAATTTCAA+TGG | 0.461142 | 2_1:-53992442 | Msa0212150:CDS |
| GCAACATTAGGATAAGTTGT+AGG | 0.468600 | 2_1:+53992334 | None:intergenic |
| TGATTACTATATGTAGCTCT+TGG | 0.472384 | 2_1:-53990696 | Msa0212150:three_prime_UTR |
| TAATTAATTCACATATCATC+TGG | 0.472556 | 2_1:+53990751 | None:intergenic |
| ATTGAAAAGGAAAATTGGTC+TGG | 0.484244 | 2_1:+53992758 | None:intergenic |
| GATAGGGACATAAATTGAAA+AGG | 0.485582 | 2_1:+53992745 | None:intergenic |
| CTGATAGAAGAGTAAGAGTG+AGG | 0.485744 | 2_1:-53991529 | Msa0212150:CDS |
| TTGGAGCATGGCTTCTCACA+AGG | 0.486813 | 2_1:-53990677 | Msa0212150:three_prime_UTR |
| AGAAGATCAATGTTGTGGTT+TGG | 0.497235 | 2_1:-53992374 | Msa0212150:CDS |
| TTACAATCTGATAATAAAGC+CGG | 0.515082 | 2_1:+53992481 | None:intergenic |
| GAAGGTACTCAGAAGAAGAA+AGG | 0.519719 | 2_1:-53991741 | Msa0212150:CDS |
| GATAGAAGAGTAAGAGTGAG+GGG | 0.529042 | 2_1:-53991527 | Msa0212150:CDS |
| AGCCATGAATGAAGGAGATA+GGG | 0.537940 | 2_1:+53992729 | None:intergenic |
| GTGGAAGAAGCCATGAATGA+AGG | 0.539473 | 2_1:+53992721 | None:intergenic |
| ATAGAAGTGATGAGGGATTG+TGG | 0.543919 | 2_1:+53992702 | None:intergenic |
| GCAGTTAAAGAATGAAGAAG+AGG | 0.550467 | 2_1:-53990824 | Msa0212150:intron |
| AACTCATGACCAATAATATG+TGG | 0.550988 | 2_1:+53992400 | None:intergenic |
| TAGTTTGTATAGAAGTGATG+AGG | 0.558490 | 2_1:+53992694 | None:intergenic |
| ATTAAGCTAGCTAGTGTGAA+AGG | 0.561995 | 2_1:-53990649 | Msa0212150:three_prime_UTR |
| AGTTTGTATAGAAGTGATGA+GGG | 0.571794 | 2_1:+53992695 | None:intergenic |
| TCTGATTTCACCACACAACA+AGG | 0.572962 | 2_1:-53992667 | Msa0212150:CDS |
| TATATGTAGCTCTTGGAGCA+TGG | 0.573046 | 2_1:-53990689 | Msa0212150:three_prime_UTR |
| GAAGAGCCAAACATAAAGGT+AGG | 0.576416 | 2_1:-53991763 | Msa0212150:CDS |
| AGCCAAACATAAAGGTAGGA+AGG | 0.578415 | 2_1:-53991759 | Msa0212150:CDS |
| TAAAGAATGAAGAAGAGGAC+TGG | 0.579395 | 2_1:-53990819 | Msa0212150:CDS |
| GGACTGGCTTCAAGAGGCCA+TGG | 0.582269 | 2_1:-53990803 | Msa0212150:CDS |
| AAACTTCAACAAAACCATCA+AGG | 0.586667 | 2_1:-53991677 | Msa0212150:intron |
| AGATGTAAACTCTAATTGCA+TGG | 0.600603 | 2_1:-53990531 | Msa0212150:three_prime_UTR |
| TAAATAGACCAAACTTGCCA+TGG | 0.601398 | 2_1:+53990786 | None:intergenic |
| ACATTAGGATAAGTTGTAGG+TGG | 0.601914 | 2_1:+53992337 | None:intergenic |
| GATGGACAATACTATGATGT+GGG | 0.618810 | 2_1:-53992629 | Msa0212150:CDS |
| CTGATTTCACCACACAACAA+GGG | 0.621194 | 2_1:-53992666 | Msa0212150:CDS |
| TGATGGACAATACTATGATG+TGG | 0.641072 | 2_1:-53992630 | Msa0212150:CDS |
| AGAAGAGGACTGGCTTCAAG+AGG | 0.645775 | 2_1:-53990809 | Msa0212150:CDS |
| GACATGTGAAGAAGATCACA+TGG | 0.652465 | 2_1:-53991483 | Msa0212150:CDS |
| TTTGTAGAAGATCAATGTTG+TGG | 0.662640 | 2_1:-53992379 | Msa0212150:CDS |
| TGAAGAAAACCCTTGTTGTG+TGG | 0.693927 | 2_1:+53992657 | None:intergenic |
| ATGGACAATACTATGATGTG+GGG | 0.739532 | 2_1:-53992628 | Msa0212150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATATATGTATATAT+AGG | + | chr2_1:53990531-53990550 | None:intergenic | 10.0% |
| !! | AAAACTTAAAAATTAACTAA+AGG | + | chr2_1:53991334-53991353 | None:intergenic | 10.0% |
| !!! | CATTTTTATTAGATTTTTTT+TGG | - | chr2_1:53992136-53992155 | Msa0212150:intron | 10.0% |
| !!! | TTATATACTTTTTTTTTGTA+GGG | + | chr2_1:53992432-53992451 | None:intergenic | 10.0% |
| !!! | AAGTATATAACTTTTTTTTA+AGG | - | chr2_1:53992442-53992461 | Msa0212150:CDS | 10.0% |
| !! | ATGAATATATATGTATATAT+AGG | + | chr2_1:53990531-53990550 | None:intergenic | 10.0% |
| !! | AAAACTTAAAAATTAACTAA+AGG | + | chr2_1:53991334-53991353 | None:intergenic | 10.0% |
| !!! | CATTTTTATTAGATTTTTTT+TGG | - | chr2_1:53992136-53992155 | Msa0212150:intron | 10.0% |
| !!! | TTATATACTTTTTTTTTGTA+GGG | + | chr2_1:53992432-53992451 | None:intergenic | 10.0% |
| !!! | AAGTATATAACTTTTTTTTA+AGG | - | chr2_1:53992442-53992461 | Msa0212150:CDS | 10.0% |
| !! | ATGAATATGTATGTATATAT+AGG | + | chr2_1:53990604-53990623 | None:intergenic | 15.0% |
| !! | TTTATTATCAGATTGTAAAA+TGG | - | chr2_1:53990957-53990976 | Msa0212150:intron | 15.0% |
| !! | TTATTATCAGATTGTAAAAT+GGG | - | chr2_1:53990958-53990977 | Msa0212150:intron | 15.0% |
| !! | TATACATGTCTATTTATATT+TGG | + | chr2_1:53991573-53991592 | None:intergenic | 15.0% |
| !!! | ATAGTTTAGTACTTTTTTTA+GGG | + | chr2_1:53992184-53992203 | None:intergenic | 15.0% |
| !!! | TATAGTTTAGTACTTTTTTT+AGG | + | chr2_1:53992185-53992204 | None:intergenic | 15.0% |
| !!! | TATATACTTTTTTTTTGTAG+GGG | + | chr2_1:53992431-53992450 | None:intergenic | 15.0% |
| !!! | GTTATATACTTTTTTTTTGT+AGG | + | chr2_1:53992433-53992452 | None:intergenic | 15.0% |
| !!! | AAAATTCATCTCTAATTTTA+TGG | + | chr2_1:53992489-53992508 | None:intergenic | 15.0% |
| !! | ATCAATTTAAGAACATAATT+AGG | + | chr2_1:53992579-53992598 | None:intergenic | 15.0% |
| !! | ATGAATATGTATGTATATAT+AGG | + | chr2_1:53990604-53990623 | None:intergenic | 15.0% |
| !! | TTTATTATCAGATTGTAAAA+TGG | - | chr2_1:53990957-53990976 | Msa0212150:intron | 15.0% |
| !! | TTATTATCAGATTGTAAAAT+GGG | - | chr2_1:53990958-53990977 | Msa0212150:intron | 15.0% |
| !! | TATACATGTCTATTTATATT+TGG | + | chr2_1:53991573-53991592 | None:intergenic | 15.0% |
| !!! | ATAGTTTAGTACTTTTTTTA+GGG | + | chr2_1:53992184-53992203 | None:intergenic | 15.0% |
| !!! | TATAGTTTAGTACTTTTTTT+AGG | + | chr2_1:53992185-53992204 | None:intergenic | 15.0% |
| !!! | TATATACTTTTTTTTTGTAG+GGG | + | chr2_1:53992431-53992450 | None:intergenic | 15.0% |
| !!! | GTTATATACTTTTTTTTTGT+AGG | + | chr2_1:53992433-53992452 | None:intergenic | 15.0% |
| !!! | AAAATTCATCTCTAATTTTA+TGG | + | chr2_1:53992489-53992508 | None:intergenic | 15.0% |
| !! | ATCAATTTAAGAACATAATT+AGG | + | chr2_1:53992579-53992598 | None:intergenic | 15.0% |
| !! | CATAAATTGAAAAGGAAAAT+TGG | + | chr2_1:53990683-53990702 | None:intergenic | 20.0% |
| !! | TATAGATTGAATGAAACATT+AGG | + | chr2_1:53991154-53991173 | None:intergenic | 20.0% |
| !!! | GCATGTTTTTTTTTTTTGAA+AGG | - | chr2_1:53991501-53991520 | Msa0212150:CDS | 20.0% |
| !!! | TTAACTTGAAATTAATTGCA+GGG | - | chr2_1:53991619-53991638 | Msa0212150:intron | 20.0% |
| !!! | TTTTTGGTGAAAATGTTTAA+CGG | + | chr2_1:53992228-53992247 | None:intergenic | 20.0% |
| !! | TTTAATTCATATACACTAAG+TGG | - | chr2_1:53992273-53992292 | Msa0212150:intron | 20.0% |
| !!! | AACTAAACAGTTTTTATAGT+CGG | + | chr2_1:53992307-53992326 | None:intergenic | 20.0% |
| !! | TAATTAATTCACATATCATC+TGG | + | chr2_1:53992685-53992704 | None:intergenic | 20.0% |
| !! | CATAAATTGAAAAGGAAAAT+TGG | + | chr2_1:53990683-53990702 | None:intergenic | 20.0% |
| !! | TATAGATTGAATGAAACATT+AGG | + | chr2_1:53991154-53991173 | None:intergenic | 20.0% |
| !!! | GCATGTTTTTTTTTTTTGAA+AGG | - | chr2_1:53991501-53991520 | Msa0212150:CDS | 20.0% |
| !!! | TTAACTTGAAATTAATTGCA+GGG | - | chr2_1:53991619-53991638 | Msa0212150:intron | 20.0% |
| !!! | TTTTTGGTGAAAATGTTTAA+CGG | + | chr2_1:53992228-53992247 | None:intergenic | 20.0% |
| !! | TTTAATTCATATACACTAAG+TGG | - | chr2_1:53992273-53992292 | Msa0212150:intron | 20.0% |
| !!! | AACTAAACAGTTTTTATAGT+CGG | + | chr2_1:53992307-53992326 | None:intergenic | 20.0% |
| !! | TAATTAATTCACATATCATC+TGG | + | chr2_1:53992685-53992704 | None:intergenic | 20.0% |
| ! | ATGCCTGTTTATGATAATTA+TGG | - | chr2_1:53990844-53990863 | Msa0212150:intron | 25.0% |
| ! | TTACAATCTGATAATAAAGC+CGG | + | chr2_1:53990955-53990974 | None:intergenic | 25.0% |
| !! | GATTGTAAAATGGGATTTTA+TGG | - | chr2_1:53990967-53990986 | Msa0212150:intron | 25.0% |
| ! | AATAATCAGCCACATATTAT+TGG | - | chr2_1:53991024-53991043 | Msa0212150:intron | 25.0% |
| ! | TAATGTTGCAAGAGAAAATT+GGG | - | chr2_1:53991113-53991132 | Msa0212150:intron | 25.0% |
| !! | GTTAACTTGAAATTAATTGC+AGG | - | chr2_1:53991618-53991637 | Msa0212150:intron | 25.0% |
| ! | TAACTTGAAATTAATTGCAG+GGG | - | chr2_1:53991620-53991639 | Msa0212150:intron | 25.0% |
| ! | GAAAATATATAAGACCTTGA+TGG | + | chr2_1:53991773-53991792 | None:intergenic | 25.0% |
| ! | CATACTGTAAAATTATGTGA+AGG | + | chr2_1:53991866-53991885 | None:intergenic | 25.0% |
| ! | CACATTAATGAAGATTTCTA+TGG | - | chr2_1:53992002-53992021 | Msa0212150:intron | 25.0% |
| !! | TTTTGGTGAAAATGTTTAAC+GGG | + | chr2_1:53992227-53992246 | None:intergenic | 25.0% |
| !! | GTCTACATTTTGTGTTTAAT+TGG | - | chr2_1:53992534-53992553 | Msa0212150:CDS | 25.0% |
| ! | ATGCCTGTTTATGATAATTA+TGG | - | chr2_1:53990844-53990863 | Msa0212150:intron | 25.0% |
| ! | TTACAATCTGATAATAAAGC+CGG | + | chr2_1:53990955-53990974 | None:intergenic | 25.0% |
| !! | GATTGTAAAATGGGATTTTA+TGG | - | chr2_1:53990967-53990986 | Msa0212150:intron | 25.0% |
| ! | AATAATCAGCCACATATTAT+TGG | - | chr2_1:53991024-53991043 | Msa0212150:intron | 25.0% |
| ! | TAATGTTGCAAGAGAAAATT+GGG | - | chr2_1:53991113-53991132 | Msa0212150:intron | 25.0% |
| !! | GTTAACTTGAAATTAATTGC+AGG | - | chr2_1:53991618-53991637 | Msa0212150:intron | 25.0% |
| ! | TAACTTGAAATTAATTGCAG+GGG | - | chr2_1:53991620-53991639 | Msa0212150:intron | 25.0% |
| ! | GAAAATATATAAGACCTTGA+TGG | + | chr2_1:53991773-53991792 | None:intergenic | 25.0% |
| ! | CATACTGTAAAATTATGTGA+AGG | + | chr2_1:53991866-53991885 | None:intergenic | 25.0% |
| ! | CACATTAATGAAGATTTCTA+TGG | - | chr2_1:53992002-53992021 | Msa0212150:intron | 25.0% |
| !! | TTTTGGTGAAAATGTTTAAC+GGG | + | chr2_1:53992227-53992246 | None:intergenic | 25.0% |
| !! | GTCTACATTTTGTGTTTAAT+TGG | - | chr2_1:53992534-53992553 | Msa0212150:CDS | 25.0% |
| !!! | TTTGTGTTTGTGTTTTGGTT+TGG | + | chr2_1:53990564-53990583 | None:intergenic | 30.0% |
| ! | TTGTGTTTGTGTTTGTGTTT+TGG | + | chr2_1:53990569-53990588 | None:intergenic | 30.0% |
| ATTGAAAAGGAAAATTGGTC+TGG | + | chr2_1:53990678-53990697 | None:intergenic | 30.0% | |
| GATAGGGACATAAATTGAAA+AGG | + | chr2_1:53990691-53990710 | None:intergenic | 30.0% | |
| AGTTTGTATAGAAGTGATGA+GGG | + | chr2_1:53990741-53990760 | None:intergenic | 30.0% | |
| ! | TAGTTTGTATAGAAGTGATG+AGG | + | chr2_1:53990742-53990761 | None:intergenic | 30.0% |
| GCTCCATAATTATCATAAAC+AGG | + | chr2_1:53990850-53990869 | None:intergenic | 30.0% | |
| ! | TGTAAAATGGGATTTTATGG+TGG | - | chr2_1:53990970-53990989 | Msa0212150:intron | 30.0% |
| AACTCATGACCAATAATATG+TGG | + | chr2_1:53991036-53991055 | None:intergenic | 30.0% | |
| TTTGTAGAAGATCAATGTTG+TGG | - | chr2_1:53991054-53991073 | Msa0212150:intron | 30.0% | |
| ! | CAATTTTCTCTTGCAACATT+AGG | + | chr2_1:53991114-53991133 | None:intergenic | 30.0% |
| CTAATGTTGCAAGAGAAAAT+TGG | - | chr2_1:53991112-53991131 | Msa0212150:intron | 30.0% | |
| !!! | GTCAAAGTGTTATTTTACCA+TGG | - | chr2_1:53991180-53991199 | Msa0212150:intron | 30.0% |
| TACTTGATCAAGAAAAACCA+TGG | + | chr2_1:53991200-53991219 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTGATCAAGTACA+TGG | - | chr2_1:53991202-53991221 | Msa0212150:intron | 30.0% |
| GTGTTGCGACAATAATATAA+AGG | + | chr2_1:53991271-53991290 | None:intergenic | 30.0% | |
| ! | TTATTGTCGCAACACAATTT+TGG | - | chr2_1:53991276-53991295 | Msa0212150:intron | 30.0% |
| ! | TGCTTTTCTTAAGATGTCAA+GGG | + | chr2_1:53991415-53991434 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTAAGATGTCA+AGG | + | chr2_1:53991416-53991435 | None:intergenic | 30.0% |
| AAACTTCAACAAAACCATCA+AGG | - | chr2_1:53991756-53991775 | Msa0212150:CDS | 30.0% | |
| !!! | ATGATTCTCAAGCTTTTTTG+TGG | + | chr2_1:53991976-53991995 | None:intergenic | 30.0% |
| CTTAAATCATGAAAGTTACC+TGG | + | chr2_1:53992046-53992065 | None:intergenic | 30.0% | |
| CAGGTAACTTTCATGATTTA+AGG | - | chr2_1:53992044-53992063 | Msa0212150:intron | 30.0% | |
| GGGAATTATAGTTAAGTACT+TGG | + | chr2_1:53992164-53992183 | None:intergenic | 30.0% | |
| ! | TAAACAGTTTTTATAGTCGG+AGG | + | chr2_1:53992304-53992323 | None:intergenic | 30.0% |
| ! | AAAAGTGCACATATGAATGA+TGG | - | chr2_1:53992374-53992393 | Msa0212150:CDS | 30.0% |
| ! | TCATCTCTAATTTTATGGAG+TGG | + | chr2_1:53992484-53992503 | None:intergenic | 30.0% |
| TGATTACTATATGTAGCTCT+TGG | - | chr2_1:53992737-53992756 | Msa0212150:exon | 30.0% | |
| AGATGTAAACTCTAATTGCA+TGG | - | chr2_1:53992902-53992921 | Msa0212150:five_prime_UTR | 30.0% | |
| !!! | TTTGTGTTTGTGTTTTGGTT+TGG | + | chr2_1:53990564-53990583 | None:intergenic | 30.0% |
| ! | TTGTGTTTGTGTTTGTGTTT+TGG | + | chr2_1:53990569-53990588 | None:intergenic | 30.0% |
| ATTGAAAAGGAAAATTGGTC+TGG | + | chr2_1:53990678-53990697 | None:intergenic | 30.0% | |
| GATAGGGACATAAATTGAAA+AGG | + | chr2_1:53990691-53990710 | None:intergenic | 30.0% | |
| AGTTTGTATAGAAGTGATGA+GGG | + | chr2_1:53990741-53990760 | None:intergenic | 30.0% | |
| ! | TAGTTTGTATAGAAGTGATG+AGG | + | chr2_1:53990742-53990761 | None:intergenic | 30.0% |
| GCTCCATAATTATCATAAAC+AGG | + | chr2_1:53990850-53990869 | None:intergenic | 30.0% | |
| ! | TGTAAAATGGGATTTTATGG+TGG | - | chr2_1:53990970-53990989 | Msa0212150:intron | 30.0% |
| AACTCATGACCAATAATATG+TGG | + | chr2_1:53991036-53991055 | None:intergenic | 30.0% | |
| TTTGTAGAAGATCAATGTTG+TGG | - | chr2_1:53991054-53991073 | Msa0212150:intron | 30.0% | |
| ! | CAATTTTCTCTTGCAACATT+AGG | + | chr2_1:53991114-53991133 | None:intergenic | 30.0% |
| CTAATGTTGCAAGAGAAAAT+TGG | - | chr2_1:53991112-53991131 | Msa0212150:intron | 30.0% | |
| !!! | GTCAAAGTGTTATTTTACCA+TGG | - | chr2_1:53991180-53991199 | Msa0212150:intron | 30.0% |
| TACTTGATCAAGAAAAACCA+TGG | + | chr2_1:53991200-53991219 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTGATCAAGTACA+TGG | - | chr2_1:53991202-53991221 | Msa0212150:intron | 30.0% |
| GTGTTGCGACAATAATATAA+AGG | + | chr2_1:53991271-53991290 | None:intergenic | 30.0% | |
| ! | TTATTGTCGCAACACAATTT+TGG | - | chr2_1:53991276-53991295 | Msa0212150:intron | 30.0% |
| ! | TGCTTTTCTTAAGATGTCAA+GGG | + | chr2_1:53991415-53991434 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTAAGATGTCA+AGG | + | chr2_1:53991416-53991435 | None:intergenic | 30.0% |
| AAACTTCAACAAAACCATCA+AGG | - | chr2_1:53991756-53991775 | Msa0212150:CDS | 30.0% | |
| !!! | ATGATTCTCAAGCTTTTTTG+TGG | + | chr2_1:53991976-53991995 | None:intergenic | 30.0% |
| CTTAAATCATGAAAGTTACC+TGG | + | chr2_1:53992046-53992065 | None:intergenic | 30.0% | |
| CAGGTAACTTTCATGATTTA+AGG | - | chr2_1:53992044-53992063 | Msa0212150:intron | 30.0% | |
| GGGAATTATAGTTAAGTACT+TGG | + | chr2_1:53992164-53992183 | None:intergenic | 30.0% | |
| ! | TAAACAGTTTTTATAGTCGG+AGG | + | chr2_1:53992304-53992323 | None:intergenic | 30.0% |
| ! | AAAAGTGCACATATGAATGA+TGG | - | chr2_1:53992374-53992393 | Msa0212150:CDS | 30.0% |
| ! | TCATCTCTAATTTTATGGAG+TGG | + | chr2_1:53992484-53992503 | None:intergenic | 30.0% |
| TGATTACTATATGTAGCTCT+TGG | - | chr2_1:53992737-53992756 | Msa0212150:exon | 30.0% | |
| AGATGTAAACTCTAATTGCA+TGG | - | chr2_1:53992902-53992921 | Msa0212150:five_prime_UTR | 30.0% | |
| !!! | TTTTTTGTTGTGAGTGTGGA+GGG | + | chr2_1:53990653-53990672 | None:intergenic | 35.0% |
| ! | AGGGTTTTCTTCAACAATGA+TGG | - | chr2_1:53990786-53990805 | Msa0212150:CDS | 35.0% |
| ! | TGATGGACAATACTATGATG+TGG | - | chr2_1:53990803-53990822 | Msa0212150:CDS | 35.0% |
| GATGGACAATACTATGATGT+GGG | - | chr2_1:53990804-53990823 | Msa0212150:CDS | 35.0% | |
| ATGGACAATACTATGATGTG+GGG | - | chr2_1:53990805-53990824 | Msa0212150:CDS | 35.0% | |
| TCTTGTTGCTCAACCAAATT+TGG | + | chr2_1:53990922-53990941 | None:intergenic | 35.0% | |
| ! | AAAATGGGATTTTATGGTGG+AGG | - | chr2_1:53990973-53990992 | Msa0212150:intron | 35.0% |
| !! | AAATGGGATTTTATGGTGGA+GGG | - | chr2_1:53990974-53990993 | Msa0212150:intron | 35.0% |
| AGAAGATCAATGTTGTGGTT+TGG | - | chr2_1:53991059-53991078 | Msa0212150:intron | 35.0% | |
| ACATTAGGATAAGTTGTAGG+TGG | + | chr2_1:53991099-53991118 | None:intergenic | 35.0% | |
| GCAACATTAGGATAAGTTGT+AGG | + | chr2_1:53991102-53991121 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTGAATTGCCAT+TGG | - | chr2_1:53991219-53991238 | Msa0212150:intron | 35.0% |
| AATTAATTGCAGGGGATTCA+AGG | - | chr2_1:53991628-53991647 | Msa0212150:intron | 35.0% | |
| AGTTGAAGAGCCAAACATAA+AGG | - | chr2_1:53991666-53991685 | Msa0212150:intron | 35.0% | |
| TACCTTCCTACCTTTATGTT+TGG | + | chr2_1:53991679-53991698 | None:intergenic | 35.0% | |
| TGATAGAAGAGTAAGAGTGA+GGG | - | chr2_1:53991905-53991924 | Msa0212150:intron | 35.0% | |
| GCAGTTAAAGAATGAAGAAG+AGG | - | chr2_1:53992609-53992628 | Msa0212150:CDS | 35.0% | |
| TAAAGAATGAAGAAGAGGAC+TGG | - | chr2_1:53992614-53992633 | Msa0212150:CDS | 35.0% | |
| TAAATAGACCAAACTTGCCA+TGG | + | chr2_1:53992650-53992669 | None:intergenic | 35.0% | |
| ! | CATATCATCTGGTGATGAAT+GGG | + | chr2_1:53992674-53992693 | None:intergenic | 35.0% |
| ! | ACATATCATCTGGTGATGAA+TGG | + | chr2_1:53992675-53992694 | None:intergenic | 35.0% |
| ATTAAGCTAGCTAGTGTGAA+AGG | - | chr2_1:53992784-53992803 | Msa0212150:five_prime_UTR | 35.0% | |
| !!! | TTTTTTGTTGTGAGTGTGGA+GGG | + | chr2_1:53990653-53990672 | None:intergenic | 35.0% |
| ! | AGGGTTTTCTTCAACAATGA+TGG | - | chr2_1:53990786-53990805 | Msa0212150:CDS | 35.0% |
| ! | TGATGGACAATACTATGATG+TGG | - | chr2_1:53990803-53990822 | Msa0212150:CDS | 35.0% |
| GATGGACAATACTATGATGT+GGG | - | chr2_1:53990804-53990823 | Msa0212150:CDS | 35.0% | |
| ATGGACAATACTATGATGTG+GGG | - | chr2_1:53990805-53990824 | Msa0212150:CDS | 35.0% | |
| TCTTGTTGCTCAACCAAATT+TGG | + | chr2_1:53990922-53990941 | None:intergenic | 35.0% | |
| ! | AAAATGGGATTTTATGGTGG+AGG | - | chr2_1:53990973-53990992 | Msa0212150:intron | 35.0% |
| !! | AAATGGGATTTTATGGTGGA+GGG | - | chr2_1:53990974-53990993 | Msa0212150:intron | 35.0% |
| AGAAGATCAATGTTGTGGTT+TGG | - | chr2_1:53991059-53991078 | Msa0212150:intron | 35.0% | |
| ACATTAGGATAAGTTGTAGG+TGG | + | chr2_1:53991099-53991118 | None:intergenic | 35.0% | |
| GCAACATTAGGATAAGTTGT+AGG | + | chr2_1:53991102-53991121 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTGAATTGCCAT+TGG | - | chr2_1:53991219-53991238 | Msa0212150:intron | 35.0% |
| AATTAATTGCAGGGGATTCA+AGG | - | chr2_1:53991628-53991647 | Msa0212150:intron | 35.0% | |
| AGTTGAAGAGCCAAACATAA+AGG | - | chr2_1:53991666-53991685 | Msa0212150:intron | 35.0% | |
| TACCTTCCTACCTTTATGTT+TGG | + | chr2_1:53991679-53991698 | None:intergenic | 35.0% | |
| TGATAGAAGAGTAAGAGTGA+GGG | - | chr2_1:53991905-53991924 | Msa0212150:intron | 35.0% | |
| GCAGTTAAAGAATGAAGAAG+AGG | - | chr2_1:53992609-53992628 | Msa0212150:CDS | 35.0% | |
| TAAAGAATGAAGAAGAGGAC+TGG | - | chr2_1:53992614-53992633 | Msa0212150:CDS | 35.0% | |
| TAAATAGACCAAACTTGCCA+TGG | + | chr2_1:53992650-53992669 | None:intergenic | 35.0% | |
| ! | CATATCATCTGGTGATGAAT+GGG | + | chr2_1:53992674-53992693 | None:intergenic | 35.0% |
| ! | ACATATCATCTGGTGATGAA+TGG | + | chr2_1:53992675-53992694 | None:intergenic | 35.0% |
| ATTAAGCTAGCTAGTGTGAA+AGG | - | chr2_1:53992784-53992803 | Msa0212150:five_prime_UTR | 35.0% | |
| TGGAGGGATATGTTTGTGTT+TGG | + | chr2_1:53990637-53990656 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGTTGTGAGTGTGG+AGG | + | chr2_1:53990654-53990673 | None:intergenic | 40.0% |
| !!! | GGTGTTTTTTGTTGTGAGTG+TGG | + | chr2_1:53990657-53990676 | None:intergenic | 40.0% |
| AGCCATGAATGAAGGAGATA+GGG | + | chr2_1:53990707-53990726 | None:intergenic | 40.0% | |
| AAGCCATGAATGAAGGAGAT+AGG | + | chr2_1:53990708-53990727 | None:intergenic | 40.0% | |
| ATAGAAGTGATGAGGGATTG+TGG | + | chr2_1:53990734-53990753 | None:intergenic | 40.0% | |
| TCTGATTTCACCACACAACA+AGG | - | chr2_1:53990766-53990785 | Msa0212150:CDS | 40.0% | |
| CTGATTTCACCACACAACAA+GGG | - | chr2_1:53990767-53990786 | Msa0212150:CDS | 40.0% | |
| ! | TGAAGAAAACCCTTGTTGTG+TGG | + | chr2_1:53990779-53990798 | None:intergenic | 40.0% |
| GTCACTTGATTGTGATGCTT+CGG | - | chr2_1:53990885-53990904 | Msa0212150:intron | 40.0% | |
| GGCTTCTTGGATTCCAAATT+TGG | - | chr2_1:53990906-53990925 | Msa0212150:intron | 40.0% | |
| GGAGGGTTTCAGAATTTCAA+TGG | - | chr2_1:53990991-53991010 | Msa0212150:intron | 40.0% | |
| AATTGCAAAAGCGACTCCAA+TGG | + | chr2_1:53991238-53991257 | None:intergenic | 40.0% | |
| GAAGAGCCAAACATAAAGGT+AGG | - | chr2_1:53991670-53991689 | Msa0212150:intron | 40.0% | |
| AGCCAAACATAAAGGTAGGA+AGG | - | chr2_1:53991674-53991693 | Msa0212150:intron | 40.0% | |
| !! | GAAGGTACTCAGAAGAAGAA+AGG | - | chr2_1:53991692-53991711 | Msa0212150:CDS | 40.0% |
| CTGATAGAAGAGTAAGAGTG+AGG | - | chr2_1:53991904-53991923 | Msa0212150:intron | 40.0% | |
| GATAGAAGAGTAAGAGTGAG+GGG | - | chr2_1:53991906-53991925 | Msa0212150:intron | 40.0% | |
| GACATGTGAAGAAGATCACA+TGG | - | chr2_1:53991950-53991969 | Msa0212150:intron | 40.0% | |
| !! | TGCTGATTCATTTCAGTTCC+AGG | - | chr2_1:53992025-53992044 | Msa0212150:intron | 40.0% |
| TATATGTAGCTCTTGGAGCA+TGG | - | chr2_1:53992744-53992763 | Msa0212150:exon | 40.0% | |
| AGCTAGTGTGAAAGGTGAAT+AGG | - | chr2_1:53992792-53992811 | Msa0212150:five_prime_UTR | 40.0% | |
| TGGAGGGATATGTTTGTGTT+TGG | + | chr2_1:53990637-53990656 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGTTGTGAGTGTGG+AGG | + | chr2_1:53990654-53990673 | None:intergenic | 40.0% |
| !!! | GGTGTTTTTTGTTGTGAGTG+TGG | + | chr2_1:53990657-53990676 | None:intergenic | 40.0% |
| AGCCATGAATGAAGGAGATA+GGG | + | chr2_1:53990707-53990726 | None:intergenic | 40.0% | |
| AAGCCATGAATGAAGGAGAT+AGG | + | chr2_1:53990708-53990727 | None:intergenic | 40.0% | |
| ATAGAAGTGATGAGGGATTG+TGG | + | chr2_1:53990734-53990753 | None:intergenic | 40.0% | |
| TCTGATTTCACCACACAACA+AGG | - | chr2_1:53990766-53990785 | Msa0212150:CDS | 40.0% | |
| CTGATTTCACCACACAACAA+GGG | - | chr2_1:53990767-53990786 | Msa0212150:CDS | 40.0% | |
| ! | TGAAGAAAACCCTTGTTGTG+TGG | + | chr2_1:53990779-53990798 | None:intergenic | 40.0% |
| GTCACTTGATTGTGATGCTT+CGG | - | chr2_1:53990885-53990904 | Msa0212150:intron | 40.0% | |
| GGCTTCTTGGATTCCAAATT+TGG | - | chr2_1:53990906-53990925 | Msa0212150:intron | 40.0% | |
| GGAGGGTTTCAGAATTTCAA+TGG | - | chr2_1:53990991-53991010 | Msa0212150:intron | 40.0% | |
| AATTGCAAAAGCGACTCCAA+TGG | + | chr2_1:53991238-53991257 | None:intergenic | 40.0% | |
| GAAGAGCCAAACATAAAGGT+AGG | - | chr2_1:53991670-53991689 | Msa0212150:intron | 40.0% | |
| AGCCAAACATAAAGGTAGGA+AGG | - | chr2_1:53991674-53991693 | Msa0212150:intron | 40.0% | |
| !! | GAAGGTACTCAGAAGAAGAA+AGG | - | chr2_1:53991692-53991711 | Msa0212150:CDS | 40.0% |
| CTGATAGAAGAGTAAGAGTG+AGG | - | chr2_1:53991904-53991923 | Msa0212150:intron | 40.0% | |
| GATAGAAGAGTAAGAGTGAG+GGG | - | chr2_1:53991906-53991925 | Msa0212150:intron | 40.0% | |
| GACATGTGAAGAAGATCACA+TGG | - | chr2_1:53991950-53991969 | Msa0212150:intron | 40.0% | |
| !! | TGCTGATTCATTTCAGTTCC+AGG | - | chr2_1:53992025-53992044 | Msa0212150:intron | 40.0% |
| TATATGTAGCTCTTGGAGCA+TGG | - | chr2_1:53992744-53992763 | Msa0212150:exon | 40.0% | |
| AGCTAGTGTGAAAGGTGAAT+AGG | - | chr2_1:53992792-53992811 | Msa0212150:five_prime_UTR | 40.0% | |
| GTCCCTATCTCCTTCATTCA+TGG | - | chr2_1:53990702-53990721 | Msa0212150:three_prime_UTR | 45.0% | |
| GTGGAAGAAGCCATGAATGA+AGG | + | chr2_1:53990715-53990734 | None:intergenic | 45.0% | |
| ATTGTGATGCTTCGGCTTCT+TGG | - | chr2_1:53990893-53990912 | Msa0212150:intron | 45.0% | |
| GCAACAAGATTTCGCTGTTC+CGG | - | chr2_1:53990933-53990952 | Msa0212150:intron | 45.0% | |
| GTCCCTATCTCCTTCATTCA+TGG | - | chr2_1:53990702-53990721 | Msa0212150:three_prime_UTR | 45.0% | |
| GTGGAAGAAGCCATGAATGA+AGG | + | chr2_1:53990715-53990734 | None:intergenic | 45.0% | |
| ATTGTGATGCTTCGGCTTCT+TGG | - | chr2_1:53990893-53990912 | Msa0212150:intron | 45.0% | |
| GCAACAAGATTTCGCTGTTC+CGG | - | chr2_1:53990933-53990952 | Msa0212150:intron | 45.0% | |
| !!! | TTTTATTTTTAAAAATTCAT+AGG | - | chr2_1:53991388-53991407 | Msa0212150:intron | 5.0% |
| !!! | TTTAATATTAATTTGATTTT+TGG | + | chr2_1:53992244-53992263 | None:intergenic | 5.0% |
| !!! | CAAATTAATATTAAATTTTA+AGG | - | chr2_1:53992249-53992268 | Msa0212150:intron | 5.0% |
| !!! | TTTTATTTTTAAAAATTCAT+AGG | - | chr2_1:53991388-53991407 | Msa0212150:intron | 5.0% |
| !!! | TTTAATATTAATTTGATTTT+TGG | + | chr2_1:53992244-53992263 | None:intergenic | 5.0% |
| !!! | CAAATTAATATTAAATTTTA+AGG | - | chr2_1:53992249-53992268 | Msa0212150:intron | 5.0% |
| GAAGAGTAAGAGTGAGGGGA+AGG | - | chr2_1:53991910-53991929 | Msa0212150:intron | 50.0% | |
| !! | AGAAGAGGACTGGCTTCAAG+AGG | - | chr2_1:53992624-53992643 | Msa0212150:CDS | 50.0% |
| TCAAGAGGCCATGGCAAGTT+TGG | - | chr2_1:53992639-53992658 | Msa0212150:CDS | 50.0% | |
| TTGGAGCATGGCTTCTCACA+AGG | - | chr2_1:53992756-53992775 | Msa0212150:five_prime_UTR | 50.0% | |
| GAAGAGTAAGAGTGAGGGGA+AGG | - | chr2_1:53991910-53991929 | Msa0212150:intron | 50.0% | |
| !! | AGAAGAGGACTGGCTTCAAG+AGG | - | chr2_1:53992624-53992643 | Msa0212150:CDS | 50.0% |
| TCAAGAGGCCATGGCAAGTT+TGG | - | chr2_1:53992639-53992658 | Msa0212150:CDS | 50.0% | |
| TTGGAGCATGGCTTCTCACA+AGG | - | chr2_1:53992756-53992775 | Msa0212150:five_prime_UTR | 50.0% | |
| !! | GGACTGGCTTCAAGAGGCCA+TGG | - | chr2_1:53992630-53992649 | Msa0212150:CDS | 60.0% |
| !! | GGACTGGCTTCAAGAGGCCA+TGG | - | chr2_1:53992630-53992649 | Msa0212150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 53990517 | 53992938 | 53990517 | ID=Msa0212150;Name=Msa0212150 |
| chr2_1 | mRNA | 53990517 | 53992938 | 53990517 | ID=Msa0212150-mRNA-1;Parent=Msa0212150;Name=Msa0212150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=123|1|1|1|0.75|0.6|5|242|273 |
| chr2_1 | exon | 53990517 | 53990842 | 53990517 | ID=Msa0212150-mRNA-1:exon:14987;Parent=Msa0212150-mRNA-1 |
| chr2_1 | exon | 53991409 | 53991573 | 53991409 | ID=Msa0212150-mRNA-1:exon:14986;Parent=Msa0212150-mRNA-1 |
| chr2_1 | exon | 53991678 | 53991815 | 53991678 | ID=Msa0212150-mRNA-1:exon:14985;Parent=Msa0212150-mRNA-1 |
| chr2_1 | exon | 53992321 | 53992824 | 53992321 | ID=Msa0212150-mRNA-1:exon:14984;Parent=Msa0212150-mRNA-1 |
| chr2_1 | exon | 53992885 | 53992938 | 53992885 | ID=Msa0212150-mRNA-1:exon:14983;Parent=Msa0212150-mRNA-1 |
| chr2_1 | five_prime_UTR | 53992885 | 53992938 | 53992885 | ID=Msa0212150-mRNA-1:five_prime_utr;Parent=Msa0212150-mRNA-1 |
| chr2_1 | five_prime_UTR | 53992756 | 53992824 | 53992756 | ID=Msa0212150-mRNA-1:five_prime_utr;Parent=Msa0212150-mRNA-1 |
| chr2_1 | CDS | 53992321 | 53992755 | 53992321 | ID=Msa0212150-mRNA-1:cds;Parent=Msa0212150-mRNA-1 |
| chr2_1 | CDS | 53991678 | 53991815 | 53991678 | ID=Msa0212150-mRNA-1:cds;Parent=Msa0212150-mRNA-1 |
| chr2_1 | CDS | 53991409 | 53991573 | 53991409 | ID=Msa0212150-mRNA-1:cds;Parent=Msa0212150-mRNA-1 |
| chr2_1 | CDS | 53990759 | 53990842 | 53990759 | ID=Msa0212150-mRNA-1:cds;Parent=Msa0212150-mRNA-1 |
| chr2_1 | three_prime_UTR | 53990517 | 53990758 | 53990517 | ID=Msa0212150-mRNA-1:three_prime_utr;Parent=Msa0212150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
