Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170330 | XP_003591806.1 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 2.08e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170330 | sp|Q38832|IAA14_ARATH | 75.000 | 236 | 44 | 4 | 8 | 236 | 1 | 228 | 9.93e-120 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170330 | G7I476 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 9.95e-173 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0170330 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030270 | Msa0170330 | 0.860584 | 1.865004e-63 | -8.615850e-47 |
| Msa0077870 | Msa0170330 | 0.965077 | 3.870667e-124 | -8.615850e-47 |
| Msa0125760 | Msa0170330 | 0.963949 | 1.024979e-122 | -8.615850e-47 |
| Msa0170330 | Msa0222930 | 0.820647 | 6.141481e-53 | -8.615850e-47 |
| Msa0170330 | Msa0264360 | 0.814848 | 1.249702e-51 | -8.615850e-47 |
| Msa0170330 | Msa0339590 | 0.815736 | 7.932938e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170330 | MtrunA17_Chr1g0187921 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 1.92e-176 | 484 |
| Msa0170330 | MtrunA17_Chr1g0184791 | 68.619 | 239 | 51 | 7 | 12 | 236 | 17 | 245 | 1.80e-102 | 297 |
| Msa0170330 | MtrunA17_Chr7g0260641 | 63.710 | 248 | 67 | 5 | 6 | 236 | 9 | 250 | 6.21e-98 | 286 |
| Msa0170330 | MtrunA17_Chr1g0190711 | 63.115 | 244 | 70 | 6 | 8 | 236 | 15 | 253 | 1.55e-96 | 282 |
| Msa0170330 | MtrunA17_Chr6g0486121 | 50.973 | 257 | 85 | 6 | 6 | 236 | 13 | 254 | 6.56e-79 | 238 |
| Msa0170330 | MtrunA17_Chr8g0390281 | 48.364 | 275 | 93 | 8 | 7 | 236 | 23 | 293 | 5.35e-71 | 219 |
| Msa0170330 | MtrunA17_Chr5g0411501 | 48.252 | 286 | 90 | 7 | 8 | 236 | 51 | 335 | 1.20e-70 | 219 |
| Msa0170330 | MtrunA17_Chr8g0366881 | 44.755 | 286 | 101 | 5 | 6 | 236 | 65 | 348 | 6.09e-68 | 213 |
| Msa0170330 | MtrunA17_Chr2g0331411 | 43.894 | 303 | 95 | 8 | 8 | 236 | 25 | 326 | 1.99e-66 | 208 |
| Msa0170330 | MtrunA17_Chr5g0428141 | 62.893 | 159 | 57 | 2 | 78 | 236 | 191 | 347 | 2.58e-66 | 208 |
| Msa0170330 | MtrunA17_Chr1g0184801 | 46.429 | 224 | 79 | 6 | 8 | 224 | 12 | 201 | 8.23e-54 | 172 |
| Msa0170330 | MtrunA17_Chr1g0187961 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 4.50e-52 | 166 |
| Msa0170330 | MtrunA17_Chr7g0260621 | 46.119 | 219 | 90 | 6 | 8 | 225 | 11 | 202 | 5.49e-52 | 167 |
| Msa0170330 | MtrunA17_Chr1g0166011 | 42.986 | 221 | 83 | 6 | 8 | 224 | 1 | 182 | 1.83e-49 | 160 |
| Msa0170330 | MtrunA17_Chr4g0004181 | 41.304 | 230 | 75 | 7 | 1 | 228 | 1 | 172 | 1.60e-38 | 132 |
| Msa0170330 | MtrunA17_Chr1g0183251 | 42.623 | 183 | 72 | 3 | 82 | 231 | 81 | 263 | 1.32e-37 | 132 |
| Msa0170330 | MtrunA17_Chr2g0332141 | 53.846 | 117 | 43 | 4 | 116 | 228 | 4 | 113 | 8.33e-35 | 120 |
| Msa0170330 | MtrunA17_Chr8g0340731 | 37.714 | 175 | 89 | 3 | 64 | 220 | 88 | 260 | 2.76e-29 | 110 |
| Msa0170330 | MtrunA17_Chr2g0330951 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 3.63e-28 | 107 |
| Msa0170330 | MtrunA17_Chr4g0069561 | 32.867 | 143 | 67 | 4 | 81 | 221 | 69 | 184 | 2.42e-19 | 82.4 |
| Msa0170330 | MtrunA17_Chr1g0193861 | 41.509 | 106 | 48 | 3 | 113 | 217 | 78 | 170 | 4.59e-17 | 76.3 |
| Msa0170330 | MtrunA17_Chr3g0137601 | 26.950 | 141 | 83 | 3 | 83 | 221 | 88 | 210 | 5.20e-17 | 77.0 |
| Msa0170330 | MtrunA17_Chr4g0064131 | 26.667 | 135 | 78 | 1 | 84 | 218 | 93 | 206 | 3.42e-15 | 71.6 |
| Msa0170330 | MtrunA17_Chr7g0270851 | 39.604 | 101 | 47 | 4 | 118 | 217 | 68 | 155 | 1.95e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170330 | AT4G14550.1 | 75.000 | 236 | 44 | 4 | 8 | 236 | 1 | 228 | 1.01e-120 | 343 |
| Msa0170330 | AT3G23050.1 | 70.683 | 249 | 50 | 6 | 4 | 236 | 2 | 243 | 2.01e-117 | 335 |
| Msa0170330 | AT4G14550.2 | 74.107 | 224 | 43 | 4 | 8 | 224 | 1 | 216 | 1.69e-112 | 322 |
| Msa0170330 | AT1G04250.1 | 65.272 | 239 | 57 | 5 | 8 | 236 | 7 | 229 | 2.01e-103 | 299 |
| Msa0170330 | AT3G04730.1 | 64.050 | 242 | 67 | 4 | 8 | 236 | 2 | 236 | 1.21e-102 | 297 |
| Msa0170330 | AT4G14550.3 | 72.414 | 203 | 41 | 4 | 8 | 203 | 1 | 195 | 7.44e-98 | 284 |
| Msa0170330 | AT3G23050.2 | 67.593 | 216 | 48 | 5 | 4 | 204 | 2 | 210 | 9.30e-95 | 276 |
| Msa0170330 | AT4G29080.1 | 48.699 | 269 | 99 | 8 | 6 | 235 | 36 | 304 | 3.62e-71 | 220 |
| Msa0170330 | AT5G65670.2 | 44.964 | 278 | 102 | 6 | 8 | 236 | 61 | 336 | 1.55e-66 | 209 |
| Msa0170330 | AT5G65670.1 | 44.643 | 280 | 102 | 7 | 8 | 236 | 61 | 338 | 1.46e-64 | 204 |
| Msa0170330 | AT2G22670.3 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.63e-63 | 200 |
| Msa0170330 | AT2G22670.1 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.63e-63 | 200 |
| Msa0170330 | AT2G22670.4 | 52.804 | 214 | 80 | 5 | 41 | 235 | 124 | 335 | 5.52e-63 | 200 |
| Msa0170330 | AT4G14550.4 | 66.667 | 159 | 38 | 4 | 8 | 159 | 1 | 151 | 1.87e-62 | 193 |
| Msa0170330 | AT2G22670.5 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.55e-60 | 191 |
| Msa0170330 | AT2G22670.2 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.55e-60 | 191 |
| Msa0170330 | AT3G23050.3 | 60.694 | 173 | 46 | 5 | 4 | 161 | 2 | 167 | 1.89e-59 | 185 |
| Msa0170330 | AT1G04240.1 | 47.511 | 221 | 80 | 7 | 4 | 224 | 1 | 185 | 7.56e-55 | 174 |
| Msa0170330 | AT1G04240.2 | 46.875 | 224 | 83 | 7 | 1 | 224 | 98 | 285 | 5.14e-54 | 175 |
| Msa0170330 | AT5G43700.1 | 48.165 | 218 | 67 | 7 | 8 | 225 | 11 | 182 | 1.65e-52 | 168 |
| Msa0170330 | AT3G23030.1 | 45.161 | 217 | 64 | 6 | 8 | 224 | 9 | 170 | 3.63e-49 | 159 |
| Msa0170330 | AT3G23030.2 | 45.161 | 217 | 64 | 6 | 8 | 224 | 96 | 257 | 2.33e-48 | 160 |
| Msa0170330 | AT4G14560.1 | 43.056 | 216 | 67 | 5 | 6 | 221 | 5 | 164 | 7.20e-44 | 145 |
| Msa0170330 | AT1G15580.1 | 40.639 | 219 | 70 | 4 | 1 | 219 | 1 | 159 | 2.53e-43 | 144 |
| Msa0170330 | AT3G15540.1 | 40.086 | 232 | 95 | 7 | 6 | 231 | 4 | 197 | 7.49e-41 | 139 |
| Msa0170330 | AT2G33310.3 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.98e-39 | 135 |
| Msa0170330 | AT2G33310.1 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.98e-39 | 135 |
| Msa0170330 | AT2G33310.2 | 44.767 | 172 | 71 | 6 | 78 | 230 | 71 | 237 | 6.90e-38 | 132 |
| Msa0170330 | AT1G52830.1 | 38.813 | 219 | 96 | 6 | 6 | 224 | 4 | 184 | 9.09e-38 | 130 |
| Msa0170330 | AT4G28640.1 | 48.408 | 157 | 65 | 5 | 83 | 225 | 88 | 242 | 1.73e-35 | 126 |
| Msa0170330 | AT1G04550.2 | 41.477 | 176 | 76 | 3 | 76 | 231 | 62 | 230 | 2.42e-35 | 126 |
| Msa0170330 | AT4G28640.3 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 2.95e-35 | 126 |
| Msa0170330 | AT3G16500.1 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 4.88e-34 | 123 |
| Msa0170330 | AT4G28640.2 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 5.36e-34 | 124 |
| Msa0170330 | AT3G16500.2 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 7.50e-34 | 122 |
| Msa0170330 | AT5G25890.1 | 39.157 | 166 | 77 | 3 | 62 | 227 | 29 | 170 | 2.74e-30 | 111 |
| Msa0170330 | AT1G04100.1 | 40.719 | 167 | 70 | 4 | 85 | 224 | 95 | 259 | 7.73e-30 | 112 |
| Msa0170330 | AT1G51950.1 | 40.625 | 160 | 74 | 4 | 80 | 220 | 93 | 250 | 2.28e-28 | 108 |
| Msa0170330 | AT3G17600.1 | 32.877 | 146 | 68 | 4 | 75 | 217 | 36 | 154 | 2.24e-21 | 87.4 |
| Msa0170330 | AT2G46990.1 | 39.623 | 106 | 51 | 2 | 114 | 219 | 80 | 172 | 8.02e-19 | 81.3 |
| Msa0170330 | AT3G62100.1 | 38.889 | 108 | 53 | 2 | 110 | 217 | 74 | 168 | 1.66e-18 | 80.1 |
| Msa0170330 | AT2G46990.2 | 40.659 | 91 | 41 | 2 | 114 | 204 | 80 | 157 | 3.98e-14 | 68.2 |
| Msa0170330 | AT4G32280.1 | 23.944 | 213 | 105 | 6 | 50 | 232 | 64 | 249 | 1.06e-13 | 68.9 |
| Msa0170330 | AT1G80390.1 | 34.000 | 150 | 61 | 3 | 9 | 158 | 15 | 126 | 1.60e-13 | 65.9 |
| Msa0170330 | AT3G62100.2 | 37.895 | 95 | 46 | 2 | 110 | 204 | 74 | 155 | 2.09e-13 | 66.2 |
| Msa0170330 | AT4G32280.2 | 29.204 | 113 | 56 | 2 | 120 | 232 | 119 | 207 | 1.49e-12 | 65.1 |
Find 105 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAAGGAGCTGAACATTT+TGG | 0.275554 | 1_4:-54279527 | None:intergenic |
| GGTGGTGGTGGCGGCGGCGG+TGG | 0.280712 | 1_4:+54278402 | Msa0170330:CDS |
| ATATATATTATAGGTAACTA+TGG | 0.289007 | 1_4:+54279946 | Msa0170330:intron |
| AATCTTCTTCTTCTAAGCTT+TGG | 0.317444 | 1_4:+54278290 | Msa0170330:five_prime_UTR |
| ATTGAAGAACTTTGTGTTTG+TGG | 0.340808 | 1_4:-54278079 | None:intergenic |
| CTTCTCATTCAGATCTTCCT+TGG | 0.341646 | 1_4:-54278508 | None:intergenic |
| GGTGGTGGCGGCGGCGGTGG+AGG | 0.343665 | 1_4:+54278405 | Msa0170330:CDS |
| TACTTAGCTGGTGGCTTAGC+AGG | 0.347183 | 1_4:-54278564 | None:intergenic |
| GGTGGCGGCGGCGGTGGAGG+TGG | 0.350359 | 1_4:+54278408 | Msa0170330:CDS |
| TTGCATTTCTCCATTGCTCT+TGG | 0.358710 | 1_4:-54280949 | None:intergenic |
| TATTATAATGCACCTTGGTT+TGG | 0.368189 | 1_4:-54278160 | None:intergenic |
| GACAAAGCTCAGTCTCCTTC+AGG | 0.370771 | 1_4:-54278368 | None:intergenic |
| ATGAAAGGATCAGAAGCTAT+TGG | 0.371063 | 1_4:+54280308 | Msa0170330:CDS |
| TGTGGATTGGAGTGTTAGTT+TGG | 0.376698 | 1_4:+54281071 | Msa0170330:three_prime_UTR |
| CCTGGTGGTGGTGGCGGCGG+CGG | 0.379613 | 1_4:+54278399 | Msa0170330:CDS |
| GGCATCAGATAAATCTTTGT+AGG | 0.380510 | 1_4:-54279500 | None:intergenic |
| GTGGCTTAGCAGGGTCCTTA+AGG | 0.389548 | 1_4:-54278554 | None:intergenic |
| TACTGCTGCTGCATTTGTTA+AGG | 0.392669 | 1_4:+54279423 | Msa0170330:CDS |
| CATGAATGAGAGCAAGTTGA+TGG | 0.395903 | 1_4:+54279990 | Msa0170330:CDS |
| TCAATTAACTTATATTATTG+AGG | 0.412560 | 1_4:+54278097 | Msa0170330:five_prime_UTR |
| CTGCCTGGTGGTGGTGGCGG+CGG | 0.419116 | 1_4:+54278396 | Msa0170330:CDS |
| TGAAAGGATCAGAAGCTATT+GGG | 0.427068 | 1_4:+54280309 | Msa0170330:CDS |
| ATTGGGAAAACTTACTTAGC+TGG | 0.432635 | 1_4:-54278576 | None:intergenic |
| CAATTAACTTATATTATTGA+GGG | 0.435956 | 1_4:+54278098 | Msa0170330:five_prime_UTR |
| TCATGAAGTCTATCATTCCT+TGG | 0.436607 | 1_4:-54279972 | None:intergenic |
| GAGCTTTGTCTTGGTCTGCC+TGG | 0.443783 | 1_4:+54278381 | Msa0170330:CDS |
| TTTGTTAAGGTTTCCATGGA+TGG | 0.449811 | 1_4:+54279436 | Msa0170330:CDS |
| AAGGAGACTGAGCTTTGTCT+TGG | 0.456647 | 1_4:+54278372 | Msa0170330:CDS |
| GGATCAGAAGCTATTGGGCT+TGG | 0.459856 | 1_4:+54280314 | Msa0170330:CDS |
| CTTGGTCTGCCTGGTGGTGG+TGG | 0.460328 | 1_4:+54278390 | Msa0170330:CDS |
| CATGAAGTCTATCATTCCTT+GGG | 0.461454 | 1_4:-54279971 | None:intergenic |
| TATTTCAGGGCTCAAGTAGT+TGG | 0.461914 | 1_4:+54279313 | Msa0170330:intron |
| TGTCTTGGTCTGCCTGGTGG+TGG | 0.462328 | 1_4:+54278387 | Msa0170330:CDS |
| TATATATTATAGGTAACTAT+GGG | 0.462994 | 1_4:+54279947 | Msa0170330:intron |
| AAAGGAGAAGACCCTCCTTA+AGG | 0.463373 | 1_4:+54278539 | Msa0170330:CDS |
| TTGGTACGGGACTTCGATAT+AGG | 0.464620 | 1_4:-54281012 | None:intergenic |
| GTCGCCATCCTTATCTTCAT+AGG | 0.465608 | 1_4:-54280043 | None:intergenic |
| GAAGAACATGATGGCACAAA+AGG | 0.465863 | 1_4:+54279360 | Msa0170330:CDS |
| CTTATAGGTCCACTTTGGTA+CGG | 0.467220 | 1_4:-54281026 | None:intergenic |
| CCTCTCTTCGCAGAAGCCCT+TGG | 0.474958 | 1_4:-54278447 | None:intergenic |
| GCTTAGCAGGGTCCTTAAGG+AGG | 0.489152 | 1_4:-54278551 | None:intergenic |
| TTATAGGTCCACTTTGGTAC+GGG | 0.492481 | 1_4:-54281025 | None:intergenic |
| GGCAAACTACAATAGTATAT+AGG | 0.494578 | 1_4:-54281185 | None:intergenic |
| GGCCACCAGTGAGGTCATAC+AGG | 0.498221 | 1_4:+54279338 | Msa0170330:CDS |
| GGTCTGCCTGGTGGTGGTGG+CGG | 0.503771 | 1_4:+54278393 | Msa0170330:CDS |
| TGTGTTGATGTTTCTCCTCA+AGG | 0.507891 | 1_4:-54278196 | None:intergenic |
| CCATCCTTATCTTCATAGGT+TGG | 0.508321 | 1_4:-54280039 | None:intergenic |
| CGGTGGAGGTGGTTCTGAGG+TGG | 0.509616 | 1_4:+54278419 | Msa0170330:CDS |
| GAATGAGAAGAGTGCTTCAA+AGG | 0.512968 | 1_4:+54278521 | Msa0170330:CDS |
| ATGAAGCACTACCTGTGGAT+TGG | 0.513101 | 1_4:+54281058 | Msa0170330:three_prime_UTR |
| TGCATTTGTTAAGGTTTCCA+TGG | 0.525650 | 1_4:+54279432 | Msa0170330:CDS |
| CCGCCGCCGCCACCACCACC+AGG | 0.530029 | 1_4:-54278399 | None:intergenic |
| TGTGCCAACCTATGAAGATA+AGG | 0.537235 | 1_4:+54280035 | Msa0170330:CDS |
| TCAGGGCTCAAGTAGTTGGT+TGG | 0.538535 | 1_4:+54279317 | Msa0170330:intron |
| ACTTAGCTGGTGGCTTAGCA+GGG | 0.540758 | 1_4:-54278563 | None:intergenic |
| TCTTGTATTATAATGCACCT+TGG | 0.543903 | 1_4:-54278165 | None:intergenic |
| TTCTTCCTGTATGACCTCAC+TGG | 0.545123 | 1_4:-54279343 | None:intergenic |
| AAGGTAAGGTGCTCCATCCA+TGG | 0.548189 | 1_4:-54279449 | None:intergenic |
| TGCGAATTTCACATCATGCT+AGG | 0.551834 | 1_4:-54278051 | None:intergenic |
| AAGTCAACCTTACGAAGGTA+AGG | 0.557851 | 1_4:-54279463 | None:intergenic |
| TGCTCGTGGGAGATGTCCCA+TGG | 0.560169 | 1_4:+54280070 | Msa0170330:CDS |
| GTTCTGAGGTGGAAACTCCA+AGG | 0.563503 | 1_4:+54278430 | Msa0170330:CDS |
| TGGAGCACCTTACCTTCGTA+AGG | 0.564503 | 1_4:+54279456 | Msa0170330:CDS |
| GTGTTGATGTTTCTCCTCAA+GGG | 0.566405 | 1_4:-54278195 | None:intergenic |
| CCAAGGGCTTCTGCGAAGAG+AGG | 0.567370 | 1_4:+54278447 | Msa0170330:CDS |
| CATTTCAGCACCAAGAGCAA+TGG | 0.570918 | 1_4:+54280939 | Msa0170330:intron |
| ATGTTCAGCTCCTTCACCAC+TGG | 0.578252 | 1_4:+54279532 | Msa0170330:CDS |
| ATTAACTTATATTATTGAGG+GGG | 0.578604 | 1_4:+54278100 | Msa0170330:five_prime_UTR |
| TAATTAATTACCAGTGGTGA+AGG | 0.579528 | 1_4:-54279542 | None:intergenic |
| AATATGGCCACTATGGGGCA+TGG | 0.587296 | 1_4:+54278339 | Msa0170330:exon |
| CTTAGCAGGGTCCTTAAGGA+GGG | 0.587502 | 1_4:-54278550 | None:intergenic |
| GTTCAATCCATGCCCCATAG+TGG | 0.588585 | 1_4:-54278346 | None:intergenic |
| ATCGAAGTCCCGTACCAAAG+TGG | 0.594032 | 1_4:+54281017 | Msa0170330:three_prime_UTR |
| AAGCGTCTGCGCATAATGAA+AGG | 0.596352 | 1_4:+54280293 | Msa0170330:CDS |
| GGATGGCGACTGGATGCTCG+TGG | 0.596688 | 1_4:+54280056 | Msa0170330:CDS |
| ATGAAGATAAGGATGGCGAC+TGG | 0.598557 | 1_4:+54280046 | Msa0170330:CDS |
| GCTATAGGAACTTACTCCCA+TGG | 0.598945 | 1_4:-54280087 | None:intergenic |
| AATTAACTTATATTATTGAG+GGG | 0.603113 | 1_4:+54278099 | Msa0170330:five_prime_UTR |
| TTCTGAGGTGGAAACTCCAA+GGG | 0.603496 | 1_4:+54278431 | Msa0170330:CDS |
| GGGAAAACTTACTTAGCTGG+TGG | 0.604797 | 1_4:-54278573 | None:intergenic |
| AAACTAACACTCCAATCCAC+AGG | 0.605858 | 1_4:-54281069 | None:intergenic |
| CGGCGGTGGAGGTGGTTCTG+AGG | 0.606000 | 1_4:+54278416 | Msa0170330:CDS |
| TTCCTGTATGACCTCACTGG+TGG | 0.606534 | 1_4:-54279340 | None:intergenic |
| ATAGGTAACTATGGGGCCCA+AGG | 0.608548 | 1_4:+54279955 | Msa0170330:intron |
| GTACGGGACTTCGATATAGG+AGG | 0.608615 | 1_4:-54281009 | None:intergenic |
| GAAGCTTAATCTTCAAACCA+AGG | 0.609730 | 1_4:+54278491 | Msa0170330:CDS |
| CTTTGTCTTGGTCTGCCTGG+TGG | 0.610253 | 1_4:+54278384 | Msa0170330:CDS |
| GATATATGAAGCACTACCTG+TGG | 0.613178 | 1_4:+54281053 | Msa0170330:three_prime_UTR |
| AAGGTGCATTATAATACAAG+AGG | 0.617418 | 1_4:+54278167 | Msa0170330:five_prime_UTR |
| CTATAGGAACTTACTCCCAT+GGG | 0.622755 | 1_4:-54280086 | None:intergenic |
| GGGGCATGGATTGAACCTGA+AGG | 0.627746 | 1_4:+54278353 | Msa0170330:CDS |
| CCAACCTATGAAGATAAGGA+TGG | 0.646142 | 1_4:+54280039 | Msa0170330:CDS |
| GCTCGTGGGAGATGTCCCAT+GGG | 0.650152 | 1_4:+54280071 | Msa0170330:CDS |
| AAACTACAATAGTATATAGG+TGG | 0.655587 | 1_4:-54281182 | None:intergenic |
| GTCATACAGGAAGAACATGA+TGG | 0.666998 | 1_4:+54279351 | Msa0170330:CDS |
| GATGGCGACTGGATGCTCGT+GGG | 0.667120 | 1_4:+54280057 | Msa0170330:CDS |
| AAAAGAATATGGCCACTATG+GGG | 0.689548 | 1_4:+54278334 | Msa0170330:exon |
| TAGTTGGTTGGCCACCAGTG+AGG | 0.691007 | 1_4:+54279329 | Msa0170330:CDS |
| TACAAGAGGACACACCCTTG+AGG | 0.691238 | 1_4:+54278181 | Msa0170330:five_prime_UTR |
| ACACAACAAACATGACAGCA+TGG | 0.695455 | 1_4:-54281239 | None:intergenic |
| ATTTCTATATAGCCAAACCA+AGG | 0.701377 | 1_4:+54278148 | Msa0170330:five_prime_UTR |
| ATAATAGTAATAATTAAACA+AGG | 0.703492 | 1_4:-54281206 | None:intergenic |
| ACAAAAGGTTAACAATACTG+AGG | 0.707970 | 1_4:+54279375 | Msa0170330:CDS |
| TTGTCAAGTCAACCTTACGA+AGG | 0.716471 | 1_4:-54279468 | None:intergenic |
| ATATATTATAGGTAACTATG+GGG | 0.717921 | 1_4:+54279948 | Msa0170330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTAATATTATTATA+AGG | + | chr1_4:54279794-54279813 | Msa0170330:intron | 0.0% |
| !! | TATTAATTTATATATATTAT+AGG | + | chr1_4:54279937-54279956 | Msa0170330:intron | 0.0% |
| !!! | ATTATTAATTTGAAGAAAAA+TGG | - | chr1_4:54279157-54279176 | None:intergenic | 10.0% |
| !! | TTAAAAAATTGCATAAAATT+TGG | - | chr1_4:54279235-54279254 | None:intergenic | 10.0% |
| !! | TGAATATTATATAATATTTC+AGG | + | chr1_4:54279299-54279318 | Msa0170330:intron | 10.0% |
| !! | GAATATTATATAATATTTCA+GGG | + | chr1_4:54279300-54279319 | Msa0170330:intron | 10.0% |
| !! | AAATAATATTTACATTATGT+TGG | - | chr1_4:54280741-54280760 | None:intergenic | 10.0% |
| !! | TGTAAATATTATTTAATAGT+TGG | + | chr1_4:54280747-54280766 | Msa0170330:intron | 10.0% |
| !! | ATAATAGTAATAATTAAACA+AGG | - | chr1_4:54281209-54281228 | None:intergenic | 10.0% |
| !! | TCAATTAACTTATATTATTG+AGG | + | chr1_4:54278097-54278116 | Msa0170330:five_prime_UTR | 15.0% |
| !! | CAATTAACTTATATTATTGA+GGG | + | chr1_4:54278098-54278117 | Msa0170330:five_prime_UTR | 15.0% |
| !! | AATTAACTTATATTATTGAG+GGG | + | chr1_4:54278099-54278118 | Msa0170330:five_prime_UTR | 15.0% |
| !!! | GTTTTTTTTTATAACTTTCT+TGG | + | chr1_4:54278626-54278645 | Msa0170330:intron | 15.0% |
| !! | AATATGAAAAAACGATATAA+GGG | - | chr1_4:54278927-54278946 | None:intergenic | 15.0% |
| !! | AAAGAATAATTGAGATTTAT+AGG | + | chr1_4:54279267-54279286 | Msa0170330:intron | 15.0% |
| !! | AAGAATAATTGAGATTTATA+GGG | + | chr1_4:54279268-54279287 | Msa0170330:intron | 15.0% |
| !! | TAGATTAATTATTATCATCT+TGG | + | chr1_4:54279867-54279886 | Msa0170330:intron | 15.0% |
| !! | AGATTAATTATTATCATCTT+GGG | + | chr1_4:54279868-54279887 | Msa0170330:intron | 15.0% |
| !! | ATATATATTATAGGTAACTA+TGG | + | chr1_4:54279946-54279965 | Msa0170330:intron | 15.0% |
| !! | TATATATTATAGGTAACTAT+GGG | + | chr1_4:54279947-54279966 | Msa0170330:intron | 15.0% |
| !!! | TGGTTATTTAAATTTTTTGA+AGG | + | chr1_4:54280252-54280271 | Msa0170330:intron | 15.0% |
| !!! | TTCAATGATTTATTTTTTGT+TGG | - | chr1_4:54280549-54280568 | None:intergenic | 15.0% |
| !! | ATGATAATTTAGATATTTGA+AGG | - | chr1_4:54280691-54280710 | None:intergenic | 15.0% |
| !! | ATTAACTTATATTATTGAGG+GGG | + | chr1_4:54278100-54278119 | Msa0170330:five_prime_UTR | 20.0% |
| !!! | TTGTTTAGTAAATGTTGTTT+TGG | - | chr1_4:54278683-54278702 | None:intergenic | 20.0% |
| !! | AATAAGAAGATAGAAAAGAA+AGG | + | chr1_4:54278832-54278851 | Msa0170330:intron | 20.0% |
| !! | TATACTATTTGTATATGAGT+TGG | + | chr1_4:54278896-54278915 | Msa0170330:intron | 20.0% |
| !! | ATATGAAAAAACGATATAAG+GGG | - | chr1_4:54278926-54278945 | None:intergenic | 20.0% |
| !! | CAATATGAAAAAACGATATA+AGG | - | chr1_4:54278928-54278947 | None:intergenic | 20.0% |
| !! | AATTTACTAAACAAGCATTA+TGG | + | chr1_4:54278969-54278988 | Msa0170330:intron | 20.0% |
| !!! | TTTTTTTCTATCTTCCATTT+GGG | - | chr1_4:54279004-54279023 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTATCTTCCATT+TGG | - | chr1_4:54279005-54279024 | None:intergenic | 20.0% |
| !! | AATATTACAAATACAAGCAT+AGG | - | chr1_4:54279586-54279605 | None:intergenic | 20.0% |
| !! | ATAAACTATATCAAATAGCT+AGG | - | chr1_4:54279721-54279740 | None:intergenic | 20.0% |
| !! | ATATATTATAGGTAACTATG+GGG | + | chr1_4:54279948-54279967 | Msa0170330:intron | 20.0% |
| !! | AGTACATATATATGTTTGTT+GGG | - | chr1_4:54280185-54280204 | None:intergenic | 20.0% |
| !! | AAGTACATATATATGTTTGT+TGG | - | chr1_4:54280186-54280205 | None:intergenic | 20.0% |
| !! | AACAAACATATATATGTACT+TGG | + | chr1_4:54280185-54280204 | Msa0170330:intron | 20.0% |
| !! | AATAACCAATGTTAATTTCA+TGG | - | chr1_4:54280240-54280259 | None:intergenic | 20.0% |
| !!! | AATATTTTGTACTTAACTCA+TGG | + | chr1_4:54280368-54280387 | Msa0170330:intron | 20.0% |
| !!! | TTTATTTTTTGTTGGTCTTA+AGG | - | chr1_4:54280541-54280560 | None:intergenic | 20.0% |
| !! | ATTGAATTGAAAATCTTAGA+TGG | + | chr1_4:54280563-54280582 | Msa0170330:intron | 20.0% |
| !!! | CTTCATATATCTTTTCTTAT+AGG | - | chr1_4:54281044-54281063 | None:intergenic | 20.0% |
| !!! | TTTTCAGTTTTTTCATAGAG+AGG | + | chr1_4:54278221-54278240 | Msa0170330:five_prime_UTR | 25.0% |
| !!! | TTTCAGTTTTTTCATAGAGA+GGG | + | chr1_4:54278222-54278241 | Msa0170330:five_prime_UTR | 25.0% |
| ! | TCAAAATTACAAGCATTTGT+GGG | - | chr1_4:54279110-54279129 | None:intergenic | 25.0% |
| ! | ATCAAAATTACAAGCATTTG+TGG | - | chr1_4:54279111-54279130 | None:intergenic | 25.0% |
| !!! | TTATGCAATTTTTTAAGCCT+TGG | + | chr1_4:54279239-54279258 | Msa0170330:intron | 25.0% |
| ! | TAGTACTAATTAATTACCAG+TGG | - | chr1_4:54279551-54279570 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTGTTGTGATGA+TGG | - | chr1_4:54279773-54279792 | None:intergenic | 25.0% |
| !!! | TATAAGGTTTTAGATCTTGA+AGG | + | chr1_4:54279810-54279829 | Msa0170330:intron | 25.0% |
| !! | GTACATATATATGTTTGTTG+GGG | - | chr1_4:54280184-54280203 | None:intergenic | 25.0% |
| ! | TTCATGGATGTGTAAATATA+TGG | - | chr1_4:54280224-54280243 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAAGGATGTTTGT+TGG | + | chr1_4:54280263-54280282 | Msa0170330:intron | 25.0% |
| ! | AAACTACAATAGTATATAGG+TGG | - | chr1_4:54281185-54281204 | None:intergenic | 25.0% |
| ATTGAAGAACTTTGTGTTTG+TGG | - | chr1_4:54278082-54278101 | None:intergenic | 30.0% | |
| ATTTCTATATAGCCAAACCA+AGG | + | chr1_4:54278148-54278167 | Msa0170330:five_prime_UTR | 30.0% | |
| TATTATAATGCACCTTGGTT+TGG | - | chr1_4:54278163-54278182 | None:intergenic | 30.0% | |
| TCTTGTATTATAATGCACCT+TGG | - | chr1_4:54278168-54278187 | None:intergenic | 30.0% | |
| AAGGTGCATTATAATACAAG+AGG | + | chr1_4:54278167-54278186 | Msa0170330:five_prime_UTR | 30.0% | |
| AATCTTCTTCTTCTAAGCTT+TGG | + | chr1_4:54278290-54278309 | Msa0170330:five_prime_UTR | 30.0% | |
| AAAAAGAATATGGCCACTAT+GGG | + | chr1_4:54278333-54278352 | Msa0170330:exon | 30.0% | |
| AGCATGCAAGTACTTTAATT+GGG | - | chr1_4:54278596-54278615 | None:intergenic | 30.0% | |
| AAGCATGCAAGTACTTTAAT+TGG | - | chr1_4:54278597-54278616 | None:intergenic | 30.0% | |
| ATATTTGTACAACTGTTCTG+TGG | + | chr1_4:54278727-54278746 | Msa0170330:intron | 30.0% | |
| ! | CAATTATTCTTTTCTCTCCA+AGG | - | chr1_4:54279259-54279278 | None:intergenic | 30.0% |
| ACAAAAGGTTAACAATACTG+AGG | + | chr1_4:54279375-54279394 | Msa0170330:CDS | 30.0% | |
| TAATTAATTACCAGTGGTGA+AGG | - | chr1_4:54279545-54279564 | None:intergenic | 30.0% | |
| CTATATCAAATAGCTAGGTA+TGG | - | chr1_4:54279716-54279735 | None:intergenic | 30.0% | |
| TGATTGTAGTATATAGTAGC+TGG | - | chr1_4:54280130-54280149 | None:intergenic | 30.0% | |
| TGGATGTGTAAATATATGGT+TGG | - | chr1_4:54280220-54280239 | None:intergenic | 30.0% | |
| CACATCCATGAAATTAACAT+TGG | + | chr1_4:54280232-54280251 | Msa0170330:intron | 30.0% | |
| ! | TGGTCTTAAGGATTAAGTTT+AGG | - | chr1_4:54280529-54280548 | None:intergenic | 30.0% |
| GGCTACTTATTCTAAGTTAT+TGG | + | chr1_4:54280901-54280920 | Msa0170330:intron | 30.0% | |
| GGCAAACTACAATAGTATAT+AGG | - | chr1_4:54281188-54281207 | None:intergenic | 30.0% | |
| GAAGCTAGCCAAAAAGAATA+TGG | + | chr1_4:54278323-54278342 | Msa0170330:exon | 35.0% | |
| ! | CATAGTGGCCATATTCTTTT+TGG | - | chr1_4:54278334-54278353 | None:intergenic | 35.0% |
| CAAAAAGAATATGGCCACTA+TGG | + | chr1_4:54278332-54278351 | Msa0170330:exon | 35.0% | |
| AAAAGAATATGGCCACTATG+GGG | + | chr1_4:54278334-54278353 | Msa0170330:exon | 35.0% | |
| GAAGCTTAATCTTCAAACCA+AGG | + | chr1_4:54278491-54278510 | Msa0170330:CDS | 35.0% | |
| ATTGGGAAAACTTACTTAGC+TGG | - | chr1_4:54278579-54278598 | None:intergenic | 35.0% | |
| AGAGAGAGAAAAAAGAAGAG+AGG | - | chr1_4:54278797-54278816 | None:intergenic | 35.0% | |
| TATGGATTCTCAAACCCAAA+TGG | + | chr1_4:54278987-54279006 | Msa0170330:intron | 35.0% | |
| ! | TGCATTTGTTAAGGTTTCCA+TGG | + | chr1_4:54279432-54279451 | Msa0170330:CDS | 35.0% |
| TTTGTTAAGGTTTCCATGGA+TGG | + | chr1_4:54279436-54279455 | Msa0170330:CDS | 35.0% | |
| GGCATCAGATAAATCTTTGT+AGG | - | chr1_4:54279503-54279522 | None:intergenic | 35.0% | |
| TAATCTTTCAGCATTCTGTC+TGG | - | chr1_4:54279641-54279660 | None:intergenic | 35.0% | |
| AATAGCTAGGTATGGACTTT+AGG | - | chr1_4:54279708-54279727 | None:intergenic | 35.0% | |
| TTTAGATCTTGAAGGATGCA+TGG | + | chr1_4:54279818-54279837 | Msa0170330:intron | 35.0% | |
| CATGAAGTCTATCATTCCTT+GGG | - | chr1_4:54279974-54279993 | None:intergenic | 35.0% | |
| TCATGAAGTCTATCATTCCT+TGG | - | chr1_4:54279975-54279994 | None:intergenic | 35.0% | |
| TAGTATATAGTAGCTGGAGA+TGG | - | chr1_4:54280124-54280143 | None:intergenic | 35.0% | |
| ATGAAAGGATCAGAAGCTAT+TGG | + | chr1_4:54280308-54280327 | Msa0170330:CDS | 35.0% | |
| TGAAAGGATCAGAAGCTATT+GGG | + | chr1_4:54280309-54280328 | Msa0170330:CDS | 35.0% | |
| ! | TAACTCATGGAAGTATGCTT+TGG | + | chr1_4:54280381-54280400 | Msa0170330:intron | 35.0% |
| TGCATCAAGTATAATGCAAG+TGG | - | chr1_4:54280477-54280496 | None:intergenic | 35.0% | |
| GCAAAAACAGAAGCTGAATT+TGG | + | chr1_4:54280968-54280987 | Msa0170330:exon | 35.0% | |
| ! | CTTTTCTTATAGGTCCACTT+TGG | - | chr1_4:54281034-54281053 | None:intergenic | 35.0% |
| ! | GTGTTGATGTTTCTCCTCAA+GGG | - | chr1_4:54278198-54278217 | None:intergenic | 40.0% |
| ! | TGTGTTGATGTTTCTCCTCA+AGG | - | chr1_4:54278199-54278218 | None:intergenic | 40.0% |
| CTTCTCATTCAGATCTTCCT+TGG | - | chr1_4:54278511-54278530 | None:intergenic | 40.0% | |
| !! | GAATGAGAAGAGTGCTTCAA+AGG | + | chr1_4:54278521-54278540 | Msa0170330:CDS | 40.0% |
| TATTTCAGGGCTCAAGTAGT+TGG | + | chr1_4:54279313-54279332 | Msa0170330:intron | 40.0% | |
| GTCATACAGGAAGAACATGA+TGG | + | chr1_4:54279351-54279370 | Msa0170330:CDS | 40.0% | |
| GAAGAACATGATGGCACAAA+AGG | + | chr1_4:54279360-54279379 | Msa0170330:CDS | 40.0% | |
| ! | TACTGCTGCTGCATTTGTTA+AGG | + | chr1_4:54279423-54279442 | Msa0170330:CDS | 40.0% |
| AAGTCAACCTTACGAAGGTA+AGG | - | chr1_4:54279466-54279485 | None:intergenic | 40.0% | |
| TTGTCAAGTCAACCTTACGA+AGG | - | chr1_4:54279471-54279490 | None:intergenic | 40.0% | |
| ! | CATTCTGTCTGGTTTAGATG+GGG | - | chr1_4:54279630-54279649 | None:intergenic | 40.0% |
| ! | GCATTCTGTCTGGTTTAGAT+GGG | - | chr1_4:54279631-54279650 | None:intergenic | 40.0% |
| ! | AGCATTCTGTCTGGTTTAGA+TGG | - | chr1_4:54279632-54279651 | None:intergenic | 40.0% |
| ! | CATGAATGAGAGCAAGTTGA+TGG | + | chr1_4:54279990-54280009 | Msa0170330:CDS | 40.0% |
| TGTGCCAACCTATGAAGATA+AGG | + | chr1_4:54280035-54280054 | Msa0170330:CDS | 40.0% | |
| CCATCCTTATCTTCATAGGT+TGG | - | chr1_4:54280042-54280061 | None:intergenic | 40.0% | |
| CCAACCTATGAAGATAAGGA+TGG | + | chr1_4:54280039-54280058 | Msa0170330:CDS | 40.0% | |
| CTATAGGAACTTACTCCCAT+GGG | - | chr1_4:54280089-54280108 | None:intergenic | 40.0% | |
| TATATAGTAGCTGGAGATGG+AGG | - | chr1_4:54280121-54280140 | None:intergenic | 40.0% | |
| ACAAAATGACACGCACACAA+GGG | - | chr1_4:54280881-54280900 | None:intergenic | 40.0% | |
| TTGCATTTCTCCATTGCTCT+TGG | - | chr1_4:54280952-54280971 | None:intergenic | 40.0% | |
| TTATAGGTCCACTTTGGTAC+GGG | - | chr1_4:54281028-54281047 | None:intergenic | 40.0% | |
| CTTATAGGTCCACTTTGGTA+CGG | - | chr1_4:54281029-54281048 | None:intergenic | 40.0% | |
| ! | GATATATGAAGCACTACCTG+TGG | + | chr1_4:54281053-54281072 | Msa0170330:three_prime_UTR | 40.0% |
| AAACTAACACTCCAATCCAC+AGG | - | chr1_4:54281072-54281091 | None:intergenic | 40.0% | |
| !! | TGTGGATTGGAGTGTTAGTT+TGG | + | chr1_4:54281071-54281090 | Msa0170330:three_prime_UTR | 40.0% |
| ACACAACAAACATGACAGCA+TGG | - | chr1_4:54281242-54281261 | None:intergenic | 40.0% | |
| ! | AAGGAGACTGAGCTTTGTCT+TGG | + | chr1_4:54278372-54278391 | Msa0170330:CDS | 45.0% |
| !! | TTCTGAGGTGGAAACTCCAA+GGG | + | chr1_4:54278431-54278450 | Msa0170330:CDS | 45.0% |
| AAAGGAGAAGACCCTCCTTA+AGG | + | chr1_4:54278539-54278558 | Msa0170330:CDS | 45.0% | |
| GGGAAAACTTACTTAGCTGG+TGG | - | chr1_4:54278576-54278595 | None:intergenic | 45.0% | |
| TTCTTCCTGTATGACCTCAC+TGG | - | chr1_4:54279346-54279365 | None:intergenic | 45.0% | |
| !!! | GGAGCTGAACATTTTGGCTA+AGG | - | chr1_4:54279524-54279543 | None:intergenic | 45.0% |
| ! | GGTGAAGGAGCTGAACATTT+TGG | - | chr1_4:54279530-54279549 | None:intergenic | 45.0% |
| GTCGCCATCCTTATCTTCAT+AGG | - | chr1_4:54280046-54280065 | None:intergenic | 45.0% | |
| ATGAAGATAAGGATGGCGAC+TGG | + | chr1_4:54280046-54280065 | Msa0170330:CDS | 45.0% | |
| GCTATAGGAACTTACTCCCA+TGG | - | chr1_4:54280090-54280109 | None:intergenic | 45.0% | |
| ATGGAGGTTGGATGAGCTAT+AGG | - | chr1_4:54280105-54280124 | None:intergenic | 45.0% | |
| AAGCGTCTGCGCATAATGAA+AGG | + | chr1_4:54280293-54280312 | Msa0170330:CDS | 45.0% | |
| AAAATGACACGCACACAAGG+GGG | - | chr1_4:54280879-54280898 | None:intergenic | 45.0% | |
| CAAAATGACACGCACACAAG+GGG | - | chr1_4:54280880-54280899 | None:intergenic | 45.0% | |
| CACAAAATGACACGCACACA+AGG | - | chr1_4:54280882-54280901 | None:intergenic | 45.0% | |
| !!! | CTTGTGTGCGTGTCATTTTG+TGG | + | chr1_4:54280880-54280899 | Msa0170330:intron | 45.0% |
| CATTTCAGCACCAAGAGCAA+TGG | + | chr1_4:54280939-54280958 | Msa0170330:intron | 45.0% | |
| TTGGTACGGGACTTCGATAT+AGG | - | chr1_4:54281015-54281034 | None:intergenic | 45.0% | |
| ! | ATGAAGCACTACCTGTGGAT+TGG | + | chr1_4:54281058-54281077 | Msa0170330:three_prime_UTR | 45.0% |
| !! | ATTTGTAATATTTATATATA+TGG | + | chr1_4:54279594-54279613 | Msa0170330:intron | 5.0% |
| TACAAGAGGACACACCCTTG+AGG | + | chr1_4:54278181-54278200 | Msa0170330:five_prime_UTR | 50.0% | |
| AATATGGCCACTATGGGGCA+TGG | + | chr1_4:54278339-54278358 | Msa0170330:exon | 50.0% | |
| GTTCAATCCATGCCCCATAG+TGG | - | chr1_4:54278349-54278368 | None:intergenic | 50.0% | |
| GACAAAGCTCAGTCTCCTTC+AGG | - | chr1_4:54278371-54278390 | None:intergenic | 50.0% | |
| !! | GTTCTGAGGTGGAAACTCCA+AGG | + | chr1_4:54278430-54278449 | Msa0170330:CDS | 50.0% |
| CTTAGCAGGGTCCTTAAGGA+GGG | - | chr1_4:54278553-54278572 | None:intergenic | 50.0% | |
| ACTTAGCTGGTGGCTTAGCA+GGG | - | chr1_4:54278566-54278585 | None:intergenic | 50.0% | |
| TACTTAGCTGGTGGCTTAGC+AGG | - | chr1_4:54278567-54278586 | None:intergenic | 50.0% | |
| TCAGGGCTCAAGTAGTTGGT+TGG | + | chr1_4:54279317-54279336 | Msa0170330:intron | 50.0% | |
| TTCCTGTATGACCTCACTGG+TGG | - | chr1_4:54279343-54279362 | None:intergenic | 50.0% | |
| ! | AAGGTAAGGTGCTCCATCCA+TGG | - | chr1_4:54279452-54279471 | None:intergenic | 50.0% |
| ! | TGGAGCACCTTACCTTCGTA+AGG | + | chr1_4:54279456-54279475 | Msa0170330:CDS | 50.0% |
| ATGTTCAGCTCCTTCACCAC+TGG | + | chr1_4:54279532-54279551 | Msa0170330:CDS | 50.0% | |
| AGGATGCATGGCGATTGTTG+AGG | + | chr1_4:54279830-54279849 | Msa0170330:intron | 50.0% | |
| ATAGGTAACTATGGGGCCCA+AGG | + | chr1_4:54279955-54279974 | Msa0170330:intron | 50.0% | |
| TAGTAGCTGGAGATGGAGGT+TGG | - | chr1_4:54280117-54280136 | None:intergenic | 50.0% | |
| GGATCAGAAGCTATTGGGCT+TGG | + | chr1_4:54280314-54280333 | Msa0170330:CDS | 50.0% | |
| AAATGACACGCACACAAGGG+GGG | - | chr1_4:54280878-54280897 | None:intergenic | 50.0% | |
| GTACGGGACTTCGATATAGG+AGG | - | chr1_4:54281012-54281031 | None:intergenic | 50.0% | |
| ATCGAAGTCCCGTACCAAAG+TGG | + | chr1_4:54281017-54281036 | Msa0170330:three_prime_UTR | 50.0% | |
| ! | GGGGCATGGATTGAACCTGA+AGG | + | chr1_4:54278353-54278372 | Msa0170330:CDS | 55.0% |
| ! | GAGCTTTGTCTTGGTCTGCC+TGG | + | chr1_4:54278381-54278400 | Msa0170330:CDS | 55.0% |
| CTTTGTCTTGGTCTGCCTGG+TGG | + | chr1_4:54278384-54278403 | Msa0170330:CDS | 55.0% | |
| GCTTAGCAGGGTCCTTAAGG+AGG | - | chr1_4:54278554-54278573 | None:intergenic | 55.0% | |
| GTGGCTTAGCAGGGTCCTTA+AGG | - | chr1_4:54278557-54278576 | None:intergenic | 55.0% | |
| ! | TAGTTGGTTGGCCACCAGTG+AGG | + | chr1_4:54279329-54279348 | Msa0170330:CDS | 55.0% |
| TGTCTTGGTCTGCCTGGTGG+TGG | + | chr1_4:54278387-54278406 | Msa0170330:CDS | 60.0% | |
| CCTCTCTTCGCAGAAGCCCT+TGG | - | chr1_4:54278450-54278469 | None:intergenic | 60.0% | |
| CCAAGGGCTTCTGCGAAGAG+AGG | + | chr1_4:54278447-54278466 | Msa0170330:CDS | 60.0% | |
| GGCCACCAGTGAGGTCATAC+AGG | + | chr1_4:54279338-54279357 | Msa0170330:CDS | 60.0% | |
| GATGGCGACTGGATGCTCGT+GGG | + | chr1_4:54280057-54280076 | Msa0170330:CDS | 60.0% | |
| TGCTCGTGGGAGATGTCCCA+TGG | + | chr1_4:54280070-54280089 | Msa0170330:CDS | 60.0% | |
| GCTCGTGGGAGATGTCCCAT+GGG | + | chr1_4:54280071-54280090 | Msa0170330:CDS | 60.0% | |
| GCACACAAGGGGGGACTCAA+GGG | - | chr1_4:54280869-54280888 | None:intergenic | 60.0% | |
| !! | CTTGGTCTGCCTGGTGGTGG+TGG | + | chr1_4:54278390-54278409 | Msa0170330:CDS | 65.0% |
| !! | CGGTGGAGGTGGTTCTGAGG+TGG | + | chr1_4:54278419-54278438 | Msa0170330:CDS | 65.0% |
| GGATGGCGACTGGATGCTCG+TGG | + | chr1_4:54280056-54280075 | Msa0170330:CDS | 65.0% | |
| CGCACACAAGGGGGGACTCA+AGG | - | chr1_4:54280870-54280889 | None:intergenic | 65.0% | |
| !! | GGTCTGCCTGGTGGTGGTGG+CGG | + | chr1_4:54278393-54278412 | Msa0170330:CDS | 70.0% |
| ! | CGGCGGTGGAGGTGGTTCTG+AGG | + | chr1_4:54278416-54278435 | Msa0170330:CDS | 70.0% |
| !! | CTGCCTGGTGGTGGTGGCGG+CGG | + | chr1_4:54278396-54278415 | Msa0170330:CDS | 75.0% |
| !!! | CCTGGTGGTGGTGGCGGCGG+CGG | + | chr1_4:54278399-54278418 | Msa0170330:CDS | 80.0% |
| ! | CCGCCGCCGCCACCACCACC+AGG | - | chr1_4:54278402-54278421 | None:intergenic | 85.0% |
| !!! | GGTGGTGGTGGCGGCGGCGG+TGG | + | chr1_4:54278402-54278421 | Msa0170330:CDS | 85.0% |
| !!! | GGTGGTGGCGGCGGCGGTGG+AGG | + | chr1_4:54278405-54278424 | Msa0170330:CDS | 85.0% |
| !! | GGTGGCGGCGGCGGTGGAGG+TGG | + | chr1_4:54278408-54278427 | Msa0170330:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54278054 | 54281311 | 54278054 | ID=Msa0170330;Name=Msa0170330 |
| chr1_4 | mRNA | 54278054 | 54281311 | 54278054 | ID=Msa0170330-mRNA-1;Parent=Msa0170330;Name=Msa0170330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=288|1|1|1|1|1|5|327|236 |
| chr1_4 | exon | 54278054 | 54278583 | 54278054 | ID=Msa0170330-mRNA-1:exon:16165;Parent=Msa0170330-mRNA-1 |
| chr1_4 | exon | 54279321 | 54279553 | 54279321 | ID=Msa0170330-mRNA-1:exon:16166;Parent=Msa0170330-mRNA-1 |
| chr1_4 | exon | 54279959 | 54280094 | 54279959 | ID=Msa0170330-mRNA-1:exon:16167;Parent=Msa0170330-mRNA-1 |
| chr1_4 | exon | 54280274 | 54280335 | 54280274 | ID=Msa0170330-mRNA-1:exon:16168;Parent=Msa0170330-mRNA-1 |
| chr1_4 | exon | 54280947 | 54281311 | 54280947 | ID=Msa0170330-mRNA-1:exon:16169;Parent=Msa0170330-mRNA-1 |
| chr1_4 | five_prime_UTR | 54278054 | 54278341 | 54278054 | ID=Msa0170330-mRNA-1:five_prime_utr;Parent=Msa0170330-mRNA-1 |
| chr1_4 | CDS | 54278342 | 54278583 | 54278342 | ID=Msa0170330-mRNA-1:cds;Parent=Msa0170330-mRNA-1 |
| chr1_4 | CDS | 54279321 | 54279553 | 54279321 | ID=Msa0170330-mRNA-1:cds;Parent=Msa0170330-mRNA-1 |
| chr1_4 | CDS | 54279959 | 54280094 | 54279959 | ID=Msa0170330-mRNA-1:cds;Parent=Msa0170330-mRNA-1 |
| chr1_4 | CDS | 54280274 | 54280335 | 54280274 | ID=Msa0170330-mRNA-1:cds;Parent=Msa0170330-mRNA-1 |
| chr1_4 | CDS | 54280947 | 54280984 | 54280947 | ID=Msa0170330-mRNA-1:cds;Parent=Msa0170330-mRNA-1 |
| chr1_4 | three_prime_UTR | 54280985 | 54281311 | 54280985 | ID=Msa0170330-mRNA-1:three_prime_utr;Parent=Msa0170330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
